Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37843.t1 | XP_003617070.1 | 99 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 3.20E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37843.t1 | Q9M2U2 | 82.0 | 311 | 54 | 2 | 1 | 310 | 1 | 310 | 1.1e-151 | 537.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37843.t1 | B7FIH8 | 99.0 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 2.3e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05087 | MS.gene37843 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene055634 | MS.gene37843 | 0.803001 | 4.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37843.t1 | MTR_5g087590 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| MS.gene37843.t1 | MTR_6g037340 | 30.962 | 239 | 131 | 9 | 61 | 288 | 43 | 258 | 3.59e-13 | 68.9 |
| MS.gene37843.t1 | MTR_6g043740 | 28.488 | 172 | 114 | 4 | 139 | 309 | 105 | 268 | 2.26e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37843.t1 | AT3G55360 | 81.994 | 311 | 54 | 2 | 1 | 310 | 1 | 310 | 0.0 | 540 |
| MS.gene37843.t1 | AT5G16010 | 30.000 | 130 | 89 | 2 | 139 | 267 | 102 | 230 | 1.05e-12 | 67.4 |
Find 90 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGAAGGTCACTTAC+AGG | 0.239953 | 5.3:+70383716 | None:intergenic |
| CCATTACGCCAAACGAATTC+TGG | 0.240898 | 5.3:-70383864 | MS.gene37843:CDS |
| CTGCCTTGATGGATGCTTCT+TGG | 0.246723 | 5.3:+70384174 | None:intergenic |
| ATGAAGATAGGCTTTGGATT+TGG | 0.247840 | 5.3:-70383698 | MS.gene37843:CDS |
| TCCGCAACTGTGCTTATTAC+TGG | 0.262844 | 5.3:-70383787 | MS.gene37843:CDS |
| TGAAGATAGGCTTTGGATTT+GGG | 0.293757 | 5.3:-70383697 | MS.gene37843:CDS |
| AGTGGAAGAGAGATTGTTAA+AGG | 0.294260 | 5.3:-70385372 | MS.gene37843:CDS |
| GTCACTTACAGGGGTGTATA+GGG | 0.307392 | 5.3:+70383727 | None:intergenic |
| TGAAGGTCACTGTGGTTTCT+AGG | 0.313807 | 5.3:-70385395 | MS.gene37843:CDS |
| GGTCACTTACAGGGGTGTAT+AGG | 0.327530 | 5.3:+70383726 | None:intergenic |
| GTCCTTGAACGTTACAGTTA+AGG | 0.339195 | 5.3:+70384054 | None:intergenic |
| GGCTACTGTAGCAGATTTGC+AGG | 0.343092 | 5.3:-70385142 | MS.gene37843:CDS |
| CTTCAAATGAAGATAGGCTT+TGG | 0.359794 | 5.3:-70383704 | MS.gene37843:CDS |
| TGTGCTTATTACTGGACATT+TGG | 0.362923 | 5.3:-70383779 | MS.gene37843:CDS |
| GAAGATTCCTCAGTATAATA+TGG | 0.369628 | 5.3:+70383645 | None:intergenic |
| AAATGTTTCCAGAATTCGTT+TGG | 0.370339 | 5.3:+70383856 | None:intergenic |
| ATTGCAACGCAAACCATTGC+CGG | 0.389032 | 5.3:-70383515 | MS.gene37843:CDS |
| CAAAGCCTATCTTCATTTGA+AGG | 0.389390 | 5.3:+70383705 | None:intergenic |
| CCGAAATACTCGTAGACAAC+GGG | 0.390772 | 5.3:+70383947 | None:intergenic |
| CCCGTTGTCTACGAGTATTT+CGG | 0.392516 | 5.3:-70383947 | MS.gene37843:CDS |
| CCAGAATTCGTTTGGCGTAA+TGG | 0.397400 | 5.3:+70383864 | None:intergenic |
| CTTGACACTTCCTGTCCAAC+CGG | 0.402666 | 5.3:-70384149 | MS.gene37843:CDS |
| GTGTACCTGCAGTTGTTTGA+TGG | 0.409094 | 5.3:-70382770 | MS.gene37843:intron |
| AACCTTAACTGTAACGTTCA+AGG | 0.415365 | 5.3:-70384056 | MS.gene37843:CDS |
| AGGAATCTTCGTGGACCTGC+TGG | 0.422036 | 5.3:-70383632 | MS.gene37843:CDS |
| TCCTTTGATCCCGGTTGGAC+AGG | 0.438015 | 5.3:+70384139 | None:intergenic |
| GGCTGGGGCTCCTACAGAAA+TGG | 0.439371 | 5.3:+70382701 | None:intergenic |
| AGTGACCTTCAAATGAAGAT+AGG | 0.453400 | 5.3:-70383710 | MS.gene37843:CDS |
| ACAGAGATTTACCAGTGGTT+GGG | 0.462151 | 5.3:-70383545 | MS.gene37843:CDS |
| AGTGTCAAGCGCTGCCTTGA+TGG | 0.477346 | 5.3:+70384163 | None:intergenic |
| TGATATCCACCTTCTCCAGC+AGG | 0.491305 | 5.3:+70383617 | None:intergenic |
| TCCTGTCCAACCGGGATCAA+AGG | 0.492864 | 5.3:-70384140 | MS.gene37843:CDS |
| AACAGAGATTTACCAGTGGT+TGG | 0.493932 | 5.3:-70383546 | MS.gene37843:CDS |
| GACGGCAAGAAATATATAAC+CGG | 0.506359 | 5.3:+70383496 | None:intergenic |
| ACTGTAACGTTCAAGGACTT+AGG | 0.507815 | 5.3:-70384049 | MS.gene37843:CDS |
| GGCCGAGGTACCCTCGTCGG+TGG | 0.508785 | 5.3:-70382736 | MS.gene37843:CDS |
| AAGAAATATATAACCGGCAA+TGG | 0.521615 | 5.3:+70383502 | None:intergenic |
| GTTGCGGAAAACATTGGAAA+GGG | 0.523442 | 5.3:+70383802 | None:intergenic |
| TACATGGCATATGTCTGCAC+AGG | 0.523747 | 5.3:+70383899 | None:intergenic |
| CAGTTGTTTGATGGAAAGGA+AGG | 0.528249 | 5.3:-70382761 | MS.gene37843:CDS |
| GATATTGCCTCCATTTCTGT+AGG | 0.528268 | 5.3:-70382711 | None:intergenic |
| TCATTTGAAGGTCACTTACA+GGG | 0.529579 | 5.3:+70383717 | None:intergenic |
| AGACATATGCCATGTACTAT+TGG | 0.530822 | 5.3:-70383892 | MS.gene37843:CDS |
| CTTCGTGGACCTGCTGGAGA+AGG | 0.532866 | 5.3:-70383626 | MS.gene37843:CDS |
| AAAACACAGGCGCTTGAAGA+AGG | 0.542376 | 5.3:-70383441 | MS.gene37843:intron |
| TACGAGTATTTCGGCTACAA+AGG | 0.543041 | 5.3:-70383938 | MS.gene37843:CDS |
| CCTGCAGTTGTTTGATGGAA+AGG | 0.543183 | 5.3:-70382765 | MS.gene37843:intron |
| GTCACTGTGGTTTCTAGGAG+TGG | 0.545999 | 5.3:-70385390 | MS.gene37843:CDS |
| ATGGAAAGGAAGGGAGGCCG+AGG | 0.552898 | 5.3:-70382751 | MS.gene37843:CDS |
| TGGAAAGGGGCGAAGTTGCA+TGG | 0.556188 | 5.3:+70383816 | None:intergenic |
| AGCACAGTTGCGGAAAACAT+TGG | 0.558230 | 5.3:+70383796 | None:intergenic |
| ACGGGGAAGTAGTAGAAGAC+TGG | 0.561573 | 5.3:+70383965 | None:intergenic |
| CGTGGACCTGCTGGAGAAGG+TGG | 0.567577 | 5.3:-70383623 | MS.gene37843:CDS |
| CAATGTTGAAGCCCAACCAC+TGG | 0.568163 | 5.3:+70383534 | None:intergenic |
| ATTATACTGAGGAATCTTCG+TGG | 0.579382 | 5.3:-70383641 | MS.gene37843:CDS |
| GGAAGAGAGATTGTTAAAGG+TGG | 0.583648 | 5.3:-70385369 | MS.gene37843:CDS |
| AGTCTCAATGACTATACAAG+TGG | 0.590878 | 5.3:-70384088 | MS.gene37843:CDS |
| AGTTGCGGAAAACATTGGAA+AGG | 0.592239 | 5.3:+70383801 | None:intergenic |
| ACCCACCGACGAGGGTACCT+CGG | 0.593529 | 5.3:+70382734 | None:intergenic |
| TCCAGTAATAAGCACAGTTG+CGG | 0.593571 | 5.3:+70383786 | None:intergenic |
| GCCGAGGTACCCTCGTCGGT+GGG | 0.594134 | 5.3:-70382735 | MS.gene37843:CDS |
| GGCAATATCACCCACCGACG+AGG | 0.596544 | 5.3:+70382725 | None:intergenic |
| TTGACACTTCCTGTCCAACC+GGG | 0.596671 | 5.3:-70384148 | MS.gene37843:CDS |
| TTTATTGCCATATTATACTG+AGG | 0.605844 | 5.3:-70383652 | MS.gene37843:CDS |
| CAGCCAAGAAGCATCCATCA+AGG | 0.606217 | 5.3:-70384177 | MS.gene37843:CDS |
| CATTTGAAGGTCACTTACAG+GGG | 0.612750 | 5.3:+70383718 | None:intergenic |
| ACTGGGCTCTTGCAAAACAC+AGG | 0.618820 | 5.3:-70383454 | MS.gene37843:CDS |
| TCACTTACAGGGGTGTATAG+GGG | 0.622126 | 5.3:+70383728 | None:intergenic |
| AAGACTGGATAGAGAAGCAA+CGG | 0.623023 | 5.3:+70383980 | None:intergenic |
| GGTCATGATAAAAGCAGCGA+CGG | 0.625472 | 5.3:+70383478 | None:intergenic |
| AGTTGTTTGATGGAAAGGAA+GGG | 0.625743 | 5.3:-70382760 | MS.gene37843:CDS |
| TGGGGCTCCTACAGAAATGG+AGG | 0.630314 | 5.3:+70382704 | None:intergenic |
| ATGGAGACACCAATAGTACA+TGG | 0.636164 | 5.3:+70383883 | None:intergenic |
| ACTCAAAGAAGAAAAGCGTA+CGG | 0.636330 | 5.3:+70384011 | None:intergenic |
| GCCGAAATACTCGTAGACAA+CGG | 0.644557 | 5.3:+70383946 | None:intergenic |
| TTACAGGGGTGTATAGGGGA+TGG | 0.652446 | 5.3:+70383732 | None:intergenic |
| GGAGGCCGAGGTACCCTCGT+CGG | 0.660981 | 5.3:-70382739 | MS.gene37843:CDS |
| TGTTTGATGGAAAGGAAGGG+AGG | 0.665428 | 5.3:-70382757 | MS.gene37843:CDS |
| AGCGTACGGTAAGAAACTTG+TGG | 0.676112 | 5.3:+70384025 | None:intergenic |
| TTGCGGAAAACATTGGAAAG+GGG | 0.678424 | 5.3:+70383803 | None:intergenic |
| TACTGTAGCAGATTTGCAGG+AGG | 0.680029 | 5.3:-70385139 | MS.gene37843:CDS |
| GCAATATCACCCACCGACGA+GGG | 0.681535 | 5.3:+70382726 | None:intergenic |
| ACATGGCATATGTCTGCACA+GGG | 0.710473 | 5.3:+70383900 | None:intergenic |
| TATTGAAGAGAAAGCCACGT+GGG | 0.722862 | 5.3:+70383591 | None:intergenic |
| CGAAATACTCGTAGACAACG+GGG | 0.728914 | 5.3:+70383948 | None:intergenic |
| TGGCATATGTCTGCACAGGG+TGG | 0.739067 | 5.3:+70383903 | None:intergenic |
| TTTGAAGATGAAGGTCACTG+TGG | 0.749871 | 5.3:-70385403 | None:intergenic |
| ATACAACAGAGATTTACCAG+TGG | 0.769592 | 5.3:-70383550 | MS.gene37843:CDS |
| ATATTGAAGAGAAAGCCACG+TGG | 0.769930 | 5.3:+70383590 | None:intergenic |
| GGTGGATATCAAATCCCACG+TGG | 0.798768 | 5.3:-70383605 | MS.gene37843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAATAAGCTAAAAA+TGG | + | chr5.3:70384892-70384911 | None:intergenic | 10.0% |
| !!! | ATAGGAAATAAATTATATTT+TGG | - | chr5.3:70382879-70382898 | MS.gene37843:intron | 10.0% |
| !! | ATTAACAATTAAAATATGCA+AGG | + | chr5.3:70385301-70385320 | None:intergenic | 15.0% |
| !! | GTATAACAAAAAATAAAATG+AGG | + | chr5.3:70384950-70384969 | None:intergenic | 15.0% |
| !! | TTTATATTGTGAAAAAATGT+GGG | + | chr5.3:70383460-70383479 | None:intergenic | 15.0% |
| !!! | TTTTATATTGTGAAAAAATG+TGG | + | chr5.3:70383461-70383480 | None:intergenic | 15.0% |
| !! | AAAAAACCAACTATAAATCA+TGG | + | chr5.3:70382933-70382952 | None:intergenic | 20.0% |
| !! | ATAAAATGATCTTGAAGTTT+GGG | - | chr5.3:70383475-70383494 | MS.gene37843:CDS | 20.0% |
| !! | ATGCAAAAGAATAACAATAT+TGG | + | chr5.3:70385277-70385296 | None:intergenic | 20.0% |
| !! | TAAGAAAGCCATAAAATAAT+AGG | + | chr5.3:70383794-70383813 | None:intergenic | 20.0% |
| !! | TATAAAATGATCTTGAAGTT+TGG | - | chr5.3:70383474-70383493 | MS.gene37843:CDS | 20.0% |
| !!! | AACTGTTTGATTTTAAATTG+AGG | - | chr5.3:70385071-70385090 | MS.gene37843:intron | 20.0% |
| !!! | ATCCAATTCCTATTATTTTA+TGG | - | chr5.3:70383783-70383802 | MS.gene37843:CDS | 20.0% |
| !!! | TTTTTGTAATTCAAAACAAC+AGG | + | chr5.3:70383999-70384018 | None:intergenic | 20.0% |
| ! | AGCATATATAAAGACCTATT+TGG | - | chr5.3:70384779-70384798 | MS.gene37843:intron | 25.0% |
| ! | AGCCATAAAATAATAGGAAT+TGG | + | chr5.3:70383788-70383807 | None:intergenic | 25.0% |
| ! | ATTGATCCATGATTTATAGT+TGG | - | chr5.3:70382924-70382943 | MS.gene37843:intron | 25.0% |
| ! | TAAGTGTGATGTTTATTGTT+TGG | - | chr5.3:70385168-70385187 | MS.gene37843:intron | 25.0% |
| ! | TAGTTCACTAATTCAGTTTA+TGG | - | chr5.3:70384714-70384733 | MS.gene37843:intron | 25.0% |
| ! | TCTGCAATCCAATAAAAATT+GGG | + | chr5.3:70383607-70383626 | None:intergenic | 25.0% |
| ! | TTAGAATGAAAGTTTCTTCT+CGG | - | chr5.3:70383507-70383526 | MS.gene37843:CDS | 25.0% |
| ! | TTAGTGAACTACAAAAGAAA+AGG | + | chr5.3:70384705-70384724 | None:intergenic | 25.0% |
| ! | TTCTGCAATCCAATAAAAAT+TGG | + | chr5.3:70383608-70383627 | None:intergenic | 25.0% |
| ! | TTTATTGCCATATTATACTG+AGG | - | chr5.3:70384456-70384475 | MS.gene37843:intron | 25.0% |
| !! | ACAGTTAACCCAATTTTTAT+TGG | - | chr5.3:70383596-70383615 | MS.gene37843:CDS | 25.0% |
| !! | CTTTTCTTCTTTGAGTATTT+GGG | - | chr5.3:70384104-70384123 | MS.gene37843:CDS | 25.0% |
| !! | GTTTTCGCTAAAAACTATTT+TGG | + | chr5.3:70384920-70384939 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTTGAGTATTTG+GGG | - | chr5.3:70384105-70384124 | MS.gene37843:CDS | 25.0% |
| !!! | CATATTTTTTCTTTTGAGAG+AGG | + | chr5.3:70383830-70383849 | None:intergenic | 25.0% |
| !!! | GATTTCTTAGGTTGATTTAT+AGG | - | chr5.3:70382861-70382880 | MS.gene37843:intron | 25.0% |
| !!! | TGCTTGTTTTTGTCATAAAA+GGG | - | chr5.3:70382831-70382850 | MS.gene37843:intron | 25.0% |
| !!! | TTAACCCACTTTTTGTATTT+TGG | - | chr5.3:70383540-70383559 | MS.gene37843:CDS | 25.0% |
| AAAAAATGTGGGACTTATGA+TGG | + | chr5.3:70383449-70383468 | None:intergenic | 30.0% | |
| AAAAATGTGGGACTTATGAT+GGG | + | chr5.3:70383448-70383467 | None:intergenic | 30.0% | |
| AAATGTTTCCAGAATTCGTT+TGG | + | chr5.3:70384255-70384274 | None:intergenic | 30.0% | |
| AAGAAATATATAACCGGCAA+TGG | + | chr5.3:70384609-70384628 | None:intergenic | 30.0% | |
| AATAAGCTAAAAATGGCTGA+TGG | + | chr5.3:70384885-70384904 | None:intergenic | 30.0% | |
| ACAGACCAAAATACAAAAAG+TGG | + | chr5.3:70383548-70383567 | None:intergenic | 30.0% | |
| CAAATCACGTTAATGAGTTA+TGG | + | chr5.3:70383895-70383914 | None:intergenic | 30.0% | |
| CAGACCAAAATACAAAAAGT+GGG | + | chr5.3:70383547-70383566 | None:intergenic | 30.0% | |
| CATAAGCGCTTATCATATAA+GGG | + | chr5.3:70384991-70385010 | None:intergenic | 30.0% | |
| GAACTACAAAAGAAAAGGTA+AGG | + | chr5.3:70384700-70384719 | None:intergenic | 30.0% | |
| GAAGATTCCTCAGTATAATA+TGG | + | chr5.3:70384466-70384485 | None:intergenic | 30.0% | |
| GTTTCTATATAGTATCGTGT+TGG | - | chr5.3:70383121-70383140 | MS.gene37843:intron | 30.0% | |
| TTAATCTTGCATCTTGTCTT+TGG | - | chr5.3:70385316-70385335 | MS.gene37843:intron | 30.0% | |
| TTGAAATTGTTTCCAACCTT+GGG | - | chr5.3:70383185-70383204 | MS.gene37843:intron | 30.0% | |
| TTGGATGAAATGAATTGAAC+TGG | + | chr5.3:70383769-70383788 | None:intergenic | 30.0% | |
| ! | GCTTTTCTTCTTTGAGTATT+TGG | - | chr5.3:70384103-70384122 | MS.gene37843:CDS | 30.0% |
| ! | TTACATTTGAGACACTCAAA+CGG | + | chr5.3:70383237-70383256 | None:intergenic | 30.0% |
| !! | GAGGATTTTGAAAGTTTTGT+CGG | - | chr5.3:70385090-70385109 | MS.gene37843:intron | 30.0% |
| !!! | AAGGGTAGTTTTGATTTCTT+AGG | - | chr5.3:70382849-70382868 | MS.gene37843:intron | 30.0% |
| !!! | GGTTTTTTTTTTTTTGCCAC+AGG | - | chr5.3:70382945-70382964 | MS.gene37843:intron | 30.0% |
| !!! | GTGCTTGTTTTTGTCATAAA+AGG | - | chr5.3:70382830-70382849 | MS.gene37843:intron | 30.0% |
| AAAATGTGGGACTTATGATG+GGG | + | chr5.3:70383447-70383466 | None:intergenic | 35.0% | |
| AACCTTAACTGTAACGTTCA+AGG | - | chr5.3:70384052-70384071 | MS.gene37843:CDS | 35.0% | |
| ACTGACATTTAAATGTGAGG+TGG | + | chr5.3:70383309-70383328 | None:intergenic | 35.0% | |
| AGACATATGCCATGTACTAT+TGG | - | chr5.3:70384216-70384235 | MS.gene37843:intron | 35.0% | |
| AGTCTCAATGACTATACAAG+TGG | - | chr5.3:70384020-70384039 | MS.gene37843:CDS | 35.0% | |
| AGTGACCTTCAAATGAAGAT+AGG | - | chr5.3:70384398-70384417 | MS.gene37843:intron | 35.0% | |
| AGTGGAAGAGAGATTGTTAA+AGG | - | chr5.3:70382736-70382755 | MS.gene37843:CDS | 35.0% | |
| AGTTGTTTGATGGAAAGGAA+GGG | - | chr5.3:70385348-70385367 | MS.gene37843:intron | 35.0% | |
| ATACAACAGAGATTTACCAG+TGG | - | chr5.3:70384558-70384577 | MS.gene37843:intron | 35.0% | |
| ATCAAAGGCTTATGTCTTGA+TGG | - | chr5.3:70383089-70383108 | MS.gene37843:intron | 35.0% | |
| ATTATACTGAGGAATCTTCG+TGG | - | chr5.3:70384467-70384486 | MS.gene37843:intron | 35.0% | |
| CAAAGCCTATCTTCATTTGA+AGG | + | chr5.3:70384406-70384425 | None:intergenic | 35.0% | |
| CGCTTATCATATAAGGGTTT+AGG | + | chr5.3:70384985-70385004 | None:intergenic | 35.0% | |
| CTCAAACAAGTCATCCAAAT+AGG | + | chr5.3:70384796-70384815 | None:intergenic | 35.0% | |
| CTGGATGAAATGAATTGAAC+TGG | + | chr5.3:70383656-70383675 | None:intergenic | 35.0% | |
| CTTCAAATGAAGATAGGCTT+TGG | - | chr5.3:70384404-70384423 | MS.gene37843:intron | 35.0% | |
| CTTGCTAGGTGAACTAAATT+TGG | - | chr5.3:70385191-70385210 | MS.gene37843:intron | 35.0% | |
| GAACACTTACGCATCATATT+TGG | + | chr5.3:70385037-70385056 | None:intergenic | 35.0% | |
| GACGGCAAGAAATATATAAC+CGG | + | chr5.3:70384615-70384634 | None:intergenic | 35.0% | |
| GCAAATAAACCGATTGTGTT+TGG | - | chr5.3:70383207-70383226 | MS.gene37843:intron | 35.0% | |
| GCATAAGCGCTTATCATATA+AGG | + | chr5.3:70384992-70385011 | None:intergenic | 35.0% | |
| GCCTTTGATCAACTTAACTT+CGG | + | chr5.3:70383078-70383097 | None:intergenic | 35.0% | |
| GCGTAAGTGTTCATATGATA+TGG | - | chr5.3:70385045-70385064 | MS.gene37843:intron | 35.0% | |
| GTGACTGACATTTAAATGTG+AGG | + | chr5.3:70383312-70383331 | None:intergenic | 35.0% | |
| GTTGAAATTGTTTCCAACCT+TGG | - | chr5.3:70383184-70383203 | MS.gene37843:intron | 35.0% | |
| GTTGGAAACAATTTCAACAG+AGG | + | chr5.3:70383182-70383201 | None:intergenic | 35.0% | |
| TCATTTGAAGGTCACTTACA+GGG | + | chr5.3:70384394-70384413 | None:intergenic | 35.0% | |
| TGTGCTTATTACTGGACATT+TGG | - | chr5.3:70384329-70384348 | MS.gene37843:intron | 35.0% | |
| TTCATTTGAAGGTCACTTAC+AGG | + | chr5.3:70384395-70384414 | None:intergenic | 35.0% | |
| ! | AACGGATTTCCAAACACAAT+CGG | + | chr5.3:70383219-70383238 | None:intergenic | 35.0% |
| ! | AATTTGGTTCATGTGTTGCT+TGG | - | chr5.3:70385207-70385226 | MS.gene37843:intron | 35.0% |
| ! | ACTCAAAGAAGAAAAGCGTA+CGG | + | chr5.3:70384100-70384119 | None:intergenic | 35.0% |
| ! | GTGTTTGGAAATCCTTTTGA+GGG | + | chr5.3:70383425-70383444 | None:intergenic | 35.0% |
| ! | TGCTTTTATCATGACCAACT+GGG | - | chr5.3:70384637-70384656 | MS.gene37843:intron | 35.0% |
| ! | TTGCAGCTTTGTGAAAATCA+CGG | + | chr5.3:70383334-70383353 | None:intergenic | 35.0% |
| !! | ACCGAAGTTAAGTTGATCAA+AGG | - | chr5.3:70383074-70383093 | MS.gene37843:intron | 35.0% |
| !! | ATGAAGATAGGCTTTGGATT+TGG | - | chr5.3:70384410-70384429 | MS.gene37843:intron | 35.0% |
| !! | TGAAGATAGGCTTTGGATTT+GGG | - | chr5.3:70384411-70384430 | MS.gene37843:intron | 35.0% |
| !! | TGTTTATTGTTTGGCTTGCT+AGG | - | chr5.3:70385177-70385196 | MS.gene37843:intron | 35.0% |
| AACAGAGATTTACCAGTGGT+TGG | - | chr5.3:70384562-70384581 | MS.gene37843:intron | 40.0% | |
| AAGACTGGATAGAGAAGCAA+CGG | + | chr5.3:70384131-70384150 | None:intergenic | 40.0% | |
| ACAGAGATTTACCAGTGGTT+GGG | - | chr5.3:70384563-70384582 | MS.gene37843:intron | 40.0% | |
| ACTGTAACGTTCAAGGACTT+AGG | - | chr5.3:70384059-70384078 | MS.gene37843:CDS | 40.0% | |
| AGTCTACTTCATCTACAGAC+TGG | + | chr5.3:70383562-70383581 | None:intergenic | 40.0% | |
| AGTTGCGGAAAACATTGGAA+AGG | + | chr5.3:70384310-70384329 | None:intergenic | 40.0% | |
| ATATTGAAGAGAAAGCCACG+TGG | + | chr5.3:70384521-70384540 | None:intergenic | 40.0% | |
| ATGGAGACACCAATAGTACA+TGG | + | chr5.3:70384228-70384247 | None:intergenic | 40.0% | |
| CAATCCACTAAGCATGTGTT+TGG | - | chr5.3:70383265-70383284 | MS.gene37843:intron | 40.0% | |
| CAGTTGTTTGATGGAAAGGA+AGG | - | chr5.3:70385347-70385366 | MS.gene37843:intron | 40.0% | |
| CATTTGAAGGTCACTTACAG+GGG | + | chr5.3:70384393-70384412 | None:intergenic | 40.0% | |
| GACATTTAAATGTGAGGTGG+AGG | + | chr5.3:70383306-70383325 | None:intergenic | 40.0% | |
| GGAAGAGAGATTGTTAAAGG+TGG | - | chr5.3:70382739-70382758 | MS.gene37843:CDS | 40.0% | |
| GTATGTGTATGTCTGTCTCT+AGG | - | chr5.3:70383857-70383876 | MS.gene37843:CDS | 40.0% | |
| GTCCTTGAACGTTACAGTTA+AGG | + | chr5.3:70384057-70384076 | None:intergenic | 40.0% | |
| GTTGCGGAAAACATTGGAAA+GGG | + | chr5.3:70384309-70384328 | None:intergenic | 40.0% | |
| TACGAGTATTTCGGCTACAA+AGG | - | chr5.3:70384170-70384189 | MS.gene37843:CDS | 40.0% | |
| TATTGAAGAGAAAGCCACGT+GGG | + | chr5.3:70384520-70384539 | None:intergenic | 40.0% | |
| TCCAGTAATAAGCACAGTTG+CGG | + | chr5.3:70384325-70384344 | None:intergenic | 40.0% | |
| TTGCGGAAAACATTGGAAAG+GGG | + | chr5.3:70384308-70384327 | None:intergenic | 40.0% | |
| TTTAAATGTGAGGTGGAGGT+AGG | + | chr5.3:70383302-70383321 | None:intergenic | 40.0% | |
| ! | ACAATCGGTTTATTTGCCCA+AGG | + | chr5.3:70383204-70383223 | None:intergenic | 40.0% |
| ! | CAAACACATGCTTAGTGGAT+TGG | + | chr5.3:70383267-70383286 | None:intergenic | 40.0% |
| ! | GGTGTTTGGAAATCCTTTTG+AGG | + | chr5.3:70383426-70383445 | None:intergenic | 40.0% |
| !! | CTGCTTTTATCATGACCAAC+TGG | - | chr5.3:70384636-70384655 | MS.gene37843:intron | 40.0% |
| AAAACACAGGCGCTTGAAGA+AGG | - | chr5.3:70384667-70384686 | MS.gene37843:intron | 45.0% | |
| AAATCTGCTACAGTAGCCTG+TGG | + | chr5.3:70382964-70382983 | None:intergenic | 45.0% | |
| ACATGGCATATGTCTGCACA+GGG | + | chr5.3:70384211-70384230 | None:intergenic | 45.0% | |
| AGCACAGTTGCGGAAAACAT+TGG | + | chr5.3:70384315-70384334 | None:intergenic | 45.0% | |
| AGCGTACGGTAAGAAACTTG+TGG | + | chr5.3:70384086-70384105 | None:intergenic | 45.0% | |
| ATTGCAACGCAAACCATTGC+CGG | - | chr5.3:70384593-70384612 | MS.gene37843:intron | 45.0% | |
| CCAGAATTCGTTTGGCGTAA+TGG | + | chr5.3:70384247-70384266 | None:intergenic | 45.0% | |
| CCATTACGCCAAACGAATTC+TGG | - | chr5.3:70384244-70384263 | MS.gene37843:intron | 45.0% | |
| CCCGTTGTCTACGAGTATTT+CGG | - | chr5.3:70384161-70384180 | MS.gene37843:CDS | 45.0% | |
| CCGAAATACTCGTAGACAAC+GGG | + | chr5.3:70384164-70384183 | None:intergenic | 45.0% | |
| CCTGCAGTTGTTTGATGGAA+AGG | - | chr5.3:70385343-70385362 | MS.gene37843:intron | 45.0% | |
| CCTTTCCATCAAACAACTGC+AGG | + | chr5.3:70385346-70385365 | None:intergenic | 45.0% | |
| CGAAATACTCGTAGACAACG+GGG | + | chr5.3:70384163-70384182 | None:intergenic | 45.0% | |
| GCCGAAATACTCGTAGACAA+CGG | + | chr5.3:70384165-70384184 | None:intergenic | 45.0% | |
| GCTACCAAACACATGCTTAG+TGG | + | chr5.3:70383272-70383291 | None:intergenic | 45.0% | |
| GGTCATGATAAAAGCAGCGA+CGG | + | chr5.3:70384633-70384652 | None:intergenic | 45.0% | |
| GTGTACCTGCAGTTGTTTGA+TGG | - | chr5.3:70385338-70385357 | MS.gene37843:intron | 45.0% | |
| TACATGGCATATGTCTGCAC+AGG | + | chr5.3:70384212-70384231 | None:intergenic | 45.0% | |
| TACTGTAGCAGATTTGCAGG+AGG | - | chr5.3:70382969-70382988 | MS.gene37843:intron | 45.0% | |
| TCCGCAACTGTGCTTATTAC+TGG | - | chr5.3:70384321-70384340 | MS.gene37843:intron | 45.0% | |
| TCGGTTTATTTGCCCAAGGT+TGG | + | chr5.3:70383200-70383219 | None:intergenic | 45.0% | |
| TGAAGGTCACTGTGGTTTCT+AGG | - | chr5.3:70382713-70382732 | MS.gene37843:CDS | 45.0% | |
| TGTTTGATGGAAAGGAAGGG+AGG | - | chr5.3:70385351-70385370 | MS.gene37843:CDS | 45.0% | |
| ! | ACAGGCTTTTCCTTTGATCC+CGG | + | chr5.3:70383981-70384000 | None:intergenic | 45.0% |
| ! | GTCACTTACAGGGGTGTATA+GGG | + | chr5.3:70384384-70384403 | None:intergenic | 45.0% |
| ! | TCACTTACAGGGGTGTATAG+GGG | + | chr5.3:70384383-70384402 | None:intergenic | 45.0% |
| !! | TAGCTTTGAGGTCCCTCAAA+AGG | - | chr5.3:70383410-70383429 | MS.gene37843:intron | 45.0% |
| ACGGGGAAGTAGTAGAAGAC+TGG | + | chr5.3:70384146-70384165 | None:intergenic | 50.0% | |
| ACTGGGCTCTTGCAAAACAC+AGG | - | chr5.3:70384654-70384673 | MS.gene37843:intron | 50.0% | |
| CAATGTTGAAGCCCAACCAC+TGG | + | chr5.3:70384577-70384596 | None:intergenic | 50.0% | |
| CTTGACACTTCCTGTCCAAC+CGG | - | chr5.3:70383959-70383978 | MS.gene37843:CDS | 50.0% | |
| GGCTACTGTAGCAGATTTGC+AGG | - | chr5.3:70382966-70382985 | MS.gene37843:intron | 50.0% | |
| GGTGGATATCAAATCCCACG+TGG | - | chr5.3:70384503-70384522 | MS.gene37843:intron | 50.0% | |
| TGATATCCACCTTCTCCAGC+AGG | + | chr5.3:70384494-70384513 | None:intergenic | 50.0% | |
| TTGACACTTCCTGTCCAACC+GGG | - | chr5.3:70383960-70383979 | MS.gene37843:CDS | 50.0% | |
| ! | CTGCCTTGATGGATGCTTCT+TGG | + | chr5.3:70383937-70383956 | None:intergenic | 50.0% |
| ! | GCTTTTCCTTTGATCCCGGT+TGG | + | chr5.3:70383977-70383996 | None:intergenic | 50.0% |
| ! | GGGACTTATGATGGGGTGTT+TGG | + | chr5.3:70383440-70383459 | None:intergenic | 50.0% |
| ! | GGTCACTTACAGGGGTGTAT+AGG | + | chr5.3:70384385-70384404 | None:intergenic | 50.0% |
| ! | GTCACTGTGGTTTCTAGGAG+TGG | - | chr5.3:70382718-70382737 | MS.gene37843:CDS | 50.0% |
| ! | GTGTTTTGCAAGAGCCCAGT+TGG | + | chr5.3:70384654-70384673 | None:intergenic | 50.0% |
| ! | TGAGCTCAAGCGTAGCTTTG+AGG | - | chr5.3:70383398-70383417 | MS.gene37843:intron | 50.0% |
| ! | TTACAGGGGTGTATAGGGGA+TGG | + | chr5.3:70384379-70384398 | None:intergenic | 50.0% |
| !! | CAGCCAAGAAGCATCCATCA+AGG | - | chr5.3:70383931-70383950 | MS.gene37843:CDS | 50.0% |
| AGGAATCTTCGTGGACCTGC+TGG | - | chr5.3:70384476-70384495 | MS.gene37843:intron | 55.0% | |
| GCAATATCACCCACCGACGA+GGG | + | chr5.3:70385385-70385404 | None:intergenic | 55.0% | |
| TCCTGTCCAACCGGGATCAA+AGG | - | chr5.3:70383968-70383987 | MS.gene37843:CDS | 55.0% | |
| TCCTTTGATCCCGGTTGGAC+AGG | + | chr5.3:70383972-70383991 | None:intergenic | 55.0% | |
| TGGAAAGGGGCGAAGTTGCA+TGG | + | chr5.3:70384295-70384314 | None:intergenic | 55.0% | |
| TGGCATATGTCTGCACAGGG+TGG | + | chr5.3:70384208-70384227 | None:intergenic | 55.0% | |
| ! | AGTGTCAAGCGCTGCCTTGA+TGG | + | chr5.3:70383948-70383967 | None:intergenic | 55.0% |
| ATGGAAAGGAAGGGAGGCCG+AGG | - | chr5.3:70385357-70385376 | MS.gene37843:CDS | 60.0% | |
| CTTCGTGGACCTGCTGGAGA+AGG | - | chr5.3:70384482-70384501 | MS.gene37843:intron | 60.0% | |
| GGCAATATCACCCACCGACG+AGG | + | chr5.3:70385386-70385405 | None:intergenic | 60.0% | |
| CGTGGACCTGCTGGAGAAGG+TGG | - | chr5.3:70384485-70384504 | MS.gene37843:intron | 65.0% | |
| !! | ACCCACCGACGAGGGTACCT+CGG | + | chr5.3:70385377-70385396 | None:intergenic | 65.0% |
| ! | GCCGAGGTACCCTCGTCGGT+GGG | - | chr5.3:70385373-70385392 | MS.gene37843:CDS | 70.0% |
| ! | GGAGGCCGAGGTACCCTCGT+CGG | - | chr5.3:70385369-70385388 | MS.gene37843:CDS | 70.0% |
| ! | GGCCGAGGTACCCTCGTCGG+TGG | - | chr5.3:70385372-70385391 | MS.gene37843:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 70382712 | 70385418 | 70382712 | ID=MS.gene37843 |
| chr5.3 | mRNA | 70382712 | 70385418 | 70382712 | ID=MS.gene37843.t1;Parent=MS.gene37843 |
| chr5.3 | exon | 70385350 | 70385418 | 70385350 | ID=MS.gene37843.t1.exon1;Parent=MS.gene37843.t1 |
| chr5.3 | CDS | 70385350 | 70385418 | 70385350 | ID=cds.MS.gene37843.t1;Parent=MS.gene37843.t1 |
| chr5.3 | exon | 70385124 | 70385163 | 70385124 | ID=MS.gene37843.t1.exon2;Parent=MS.gene37843.t1 |
| chr5.3 | CDS | 70385124 | 70385163 | 70385124 | ID=cds.MS.gene37843.t1;Parent=MS.gene37843.t1 |
| chr5.3 | exon | 70383442 | 70384196 | 70383442 | ID=MS.gene37843.t1.exon3;Parent=MS.gene37843.t1 |
| chr5.3 | CDS | 70383442 | 70384196 | 70383442 | ID=cds.MS.gene37843.t1;Parent=MS.gene37843.t1 |
| chr5.3 | exon | 70382712 | 70382780 | 70382712 | ID=MS.gene37843.t1.exon4;Parent=MS.gene37843.t1 |
| chr5.3 | CDS | 70382712 | 70382780 | 70382712 | ID=cds.MS.gene37843.t1;Parent=MS.gene37843.t1 |
| Gene Sequence |
| Protein sequence |
