AlfalfaGEDB | MS.gene37912

M. sativa cultivar XinJiangDaYe / MS.gene37912

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37912.t1	XP_003616926.2	93.4	667	34	3	1	664	1	660	8.70E-307	1062.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37912.t1	O22808	56.0	673	253	17	7	657	11	662	3.0e-162	573.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37912.t1	G7K7K0	93.4	667	34	3	1	664	1	660	6.3e-307	1062.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051837	MS.gene37912	0.842717	2.18E-58	-1.69E-46
MS.gene057093	MS.gene37912	0.813136	2.98E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37912.t1	MTR_5g085790	94.753	667	25	3	1	664	1	660	0.0	1180
MS.gene37912.t1	MTR_3g080170	60.611	655	226	11	17	662	22	653	0.0	772
MS.gene37912.t1	MTR_1g021845	35.575	669	381	14	4	659	3	634	7.79e-130	397
MS.gene37912.t1	MTR_7g079350	34.604	682	367	19	1	650	20	654	3.41e-102	329
MS.gene37912.t1	MTR_7g079320	32.148	675	366	20	8	641	11	634	1.58e-90	296
MS.gene37912.t1	MTR_5g019050	44.586	314	165	2	333	646	332	636	1.48e-87	286
MS.gene37912.t1	MTR_5g042440	31.915	611	367	18	50	650	51	622	1.51e-85	281
MS.gene37912.t1	MTR_5g019040	30.177	623	334	18	45	654	42	576	1.88e-81	269
MS.gene37912.t1	MTR_7g029650	29.935	618	389	15	50	638	38	640	8.90e-80	267
MS.gene37912.t1	MTR_2g024290	31.613	620	362	20	44	646	25	599	7.97e-73	247

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37912.t1	AT2G33580	52.872	679	265	19	7	657	11	662	0.0	635
MS.gene37912.t1	AT2G23770	37.768	654	345	14	6	648	8	610	6.52e-129	394
MS.gene37912.t1	AT3G21630	31.765	595	332	20	72	646	61	601	4.42e-80	266
MS.gene37912.t1	AT3G01840	29.907	642	352	26	33	638	39	618	3.60e-66	230
MS.gene37912.t1	AT1G51940	36.000	325	185	7	338	648	321	636	1.69e-58	209
MS.gene37912.t1	AT1G68690	33.181	437	244	13	230	643	246	657	1.07e-53	196
MS.gene37912.t1	AT1G68690	33.181	437	244	13	230	643	246	657	1.07e-53	196
MS.gene37912.t1	AT1G68690	33.181	437	244	13	230	643	246	657	1.07e-53	196
MS.gene37912.t1	AT1G68690	34.118	425	232	13	230	631	246	645	1.15e-53	196
MS.gene37912.t1	AT1G26150	31.002	429	250	11	244	643	300	711	2.09e-52	193

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Find 136 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTCTCAATATACTC+CGG	0.648770	5.3:-69426116	None:intergenic
AAAGCTTTACCCACCGCCGG+TGG	0.642415	5.3:-69425441	None:intergenic
AAATTCTTATGAACATGTGG+TGG	0.535879	5.3:-69425951	None:intergenic
AACACATACAACTCAACTTT+AGG	0.417652	5.3:+69424631	MS.gene37912:CDS
AACGGTGAAGTAGGTTTCAC+CGG	0.549553	5.3:-69424914	None:intergenic
AACGTTGAAAATTTCAGCAA+TGG	0.471819	5.3:-69425130	None:intergenic
AAGCTACAACCACCGGCGGT+GGG	0.583364	5.3:+69425432	MS.gene37912:CDS
AATGAAGGAAACCTTGTACG+TGG	0.717566	5.3:+69424997	MS.gene37912:CDS
AATGCGAAAACATCCATCTT+TGG	0.397871	5.3:-69426146	None:intergenic
AATGTTAGGGAGAAGCTTAG+AGG	0.490659	5.3:+69426284	MS.gene37912:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCATTCTCAATATACTC+CGG	-	chr5.3:69426119-69426138	None:intergenic	30.0%
AAATTCTTATGAACATGTGG+TGG	-	chr5.3:69425954-69425973	None:intergenic	30.0%
AACACATACAACTCAACTTT+AGG	+	chr5.3:69424631-69424650	MS.gene37912:CDS	30.0%
AACGTTGAAAATTTCAGCAA+TGG	-	chr5.3:69425133-69425152	None:intergenic	30.0%
ACAAAAAAACAGAGTGATGA+AGG	+	chr5.3:69425057-69425076	MS.gene37912:CDS	30.0%
ACAAGGTTTCCTTCATTATA+AGG	-	chr5.3:69424994-69425013	None:intergenic	30.0%
ATGAAAACCTCAGAAACATT+TGG	-	chr5.3:69426410-69426429	None:intergenic	30.0%
ATTGAAAATGCAAGATCCAA+AGG	-	chr5.3:69426341-69426360	None:intergenic	30.0%
CAATTAACAAGACATGTCAT+AGG	+	chr5.3:69426074-69426093	MS.gene37912:CDS	30.0%
CTTCAAAATGTTAATCTCAG+AGG	-	chr5.3:69425697-69425716	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	69424532	69426526	69424532	ID=MS.gene37912
chr5.3	mRNA	69424532	69426526	69424532	ID=MS.gene37912.t1;Parent=MS.gene37912
chr5.3	exon	69424532	69426526	69424532	ID=MS.gene37912.t1.exon1;Parent=MS.gene37912.t1
chr5.3	CDS	69424532	69426526	69424532	ID=cds.MS.gene37912.t1;Parent=MS.gene37912.t1

Gene Sequence

>MS.gene37912

ATGGCATGGCAAACCTTAGTAACACTAATAATCATAACAACTTTCTCAAAAACACAATCCCAACAAGAATACGTAAACAACAAACAACTAGATTGTGAAAACACATACAACTCAACTTTAGGCAACATATGCAATAGCATCCCTTCATGTCAATCTTATCTCACCTTCAAATCCACTCCCCAATTCAACACCCCCTCTTCCATTTCACACCTCCTCAACGCTTCCCCATCTCTCATCTCACAATCCAACAACATCTCCACCGTCCAAACCCTCCCCACAGACACAATCATAACCGTCCCTATAAACTGCACATGCTCCAACAACAACAACAACAGCAGCAACAACTACTATCAACACAACACTTCCTACACTATACAAATCACCGGTGAAACCTACTTCACCGTTGCTAATAACACATACCAAGCTTTATCCACGTGTCAAGCTCTTATAGCTCAGAATCCTTATAATGAAGGAAACCTTGTACGTGGTAACAACTTAACTGTTCCTCTTCGTTGTGCTTGTCCTACAAAAAAACAGAGTGATGAAGGTTTCAAGTATCTTCTAACGTACTTGGTTTCTGAAGGTGAATCAGTTTCTTCCATTGCTGAAATTTTCAACGTTGATCCACAAAGCATTAACGAAGCTAATGAACTTTCTTCTACGTCGTTTATTTTCTACTTTACACCGCTTTTAATACCTCTCAAAAATGAACCGCGGCAAGAAATAGTCAAAACAGCTTCACCACCGGAGTCTCCGCCTCCGCCGCCACCAGCGGCGGAGGACGGCGGTTCATCCTCTTCCACAAAATGGGTCATCGTCGGTGTAGCGGTTGGTGTTGTTGTTTTGCTTCTGGTGGGTGTTGCTCTGTTTTTCCTCTGTTTCCGGCGACGGCGACAACAGAAGCTACAACCACCGGCGGTGGGTAAAGCTTTCTCAGATTCTGACACAAAGAAAGTTTCAAAGGTTACTTCAACATCTCAATCTTGGTCTCTTTCTTCTGAGGGGATACGTTATGCGGTTGATTCATTGACTGTGTACAAGTTTGAAGATTTGCAAAATGCAACAAATTTTTTCAGTGAAGAGAATAAGATTAAAGGTTCTGTTTATAGAGCTTCTTTTAAAGGTGATGATGCTGCTGTTAAGATTCTTAAAGGTGATGTTTCCTCTGAGATTAACATTTTGAAGAGGATTAATCATGCTAATATTATAAGGTTGTCTGGTTTTTGTGTCTACAAAGGTAATACTTATCTTGTTTATGAGTTTGCTGAGAATAATTCTCTTGATGATTGGCTTCACTCTGAGAAGAACAGGGATAAGAATTATTCGAATTCGAATTCTATGTGTTTGAGTTGGTTTCAAAGAGTTCAGATTGCTCATGATGTAGCTGATGCACTTAATTACCTTCATAATTATGCTAATCCACCACATGTTCATAAGAATTTGAAAAGTGGTAATATTCTTTTAGATGGAAAATTTAGAGGTAAAGTTTCAGATTTTGGGTTGGCAAGAGTTATGGAGAATGAAGGAGGGGATGAAGGGTTTCAATTAACAAGACATGTCATAGGGACTCAAGGTTACATGGCACCGGAGTATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTCGCATTTGGTGTTGTGATTTTGGAGCTTCTTTCTGGAAGAGAAGTTGTTGGTGGTGACAAGAGTGATGGTTTGGGAGATCAGCTTTTAGCTTCAACTGTGAATCAGGTTCTTGAAGGAGACAATGTTAGGGAGAAGCTTAGAGGTTTCATGGATCCAAATTTGAGAGATGAATATCCTTTGGATCTTGCATTTTCAATGGCTGAGATTGCTAAAAGATGTGTTGCTCGTGATCTTAATTCAAGACCAAATGTTTCTGAGGTTTTCATGATTCTGTCTAAGATTCAATCCTCTACATTGGAGTGGGATCCATCTGATGACCTTGAACGGTCCAGATCCGTTAGCCAAGTTTCTGATAGTAGATAG

Protein sequence

>MS.gene37912.t1

MAWQTLVTLIIITTFSKTQSQQEYVNNKQLDCENTYNSTLGNICNSIPSCQSYLTFKSTPQFNTPSSISHLLNASPSLISQSNNISTVQTLPTDTIITVPINCTCSNNNNNSSNNYYQHNTSYTIQITGETYFTVANNTYQALSTCQALIAQNPYNEGNLVRGNNLTVPLRCACPTKKQSDEGFKYLLTYLVSEGESVSSIAEIFNVDPQSINEANELSSTSFIFYFTPLLIPLKNEPRQEIVKTASPPESPPPPPPAAEDGGSSSSTKWVIVGVAVGVVVLLLVGVALFFLCFRRRRQQKLQPPAVGKAFSDSDTKKVSKVTSTSQSWSLSSEGIRYAVDSLTVYKFEDLQNATNFFSEENKIKGSVYRASFKGDDAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENNSLDDWLHSEKNRDKNYSNSNSMCLSWFQRVQIAHDVADALNYLHNYANPPHVHKNLKSGNILLDGKFRGKVSDFGLARVMENEGGDEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVGGDKSDGLGDQLLASTVNQVLEGDNVREKLRGFMDPNLRDEYPLDLAFSMAEIAKRCVARDLNSRPNVSEVFMILSKIQSSTLEWDPSDDLERSRSVSQVSDSR