Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37928.t1 | XP_003602912.1 | 99.7 | 301 | 1 | 0 | 1 | 301 | 217 | 517 | 1.20E-170 | 609 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37928.t1 | Q7Y030 | 76.0 | 300 | 72 | 0 | 1 | 300 | 218 | 517 | 2.1e-131 | 469.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37928.t1 | G7J538 | 99.7 | 301 | 1 | 0 | 1 | 301 | 217 | 517 | 8.6e-171 | 609.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene37928 | 0.814684 | 1.36E-51 | -1.69E-46 |
| MS.gene050630 | MS.gene37928 | 0.806837 | 6.78E-50 | -1.69E-46 |
| MS.gene052152 | MS.gene37928 | 0.807775 | 4.29E-50 | -1.69E-46 |
| MS.gene052156 | MS.gene37928 | 0.883596 | 3.93E-71 | -1.69E-46 |
| MS.gene053144 | MS.gene37928 | 0.814236 | 1.71E-51 | -1.69E-46 |
| MS.gene05638 | MS.gene37928 | 0.828276 | 9.84E-55 | -1.69E-46 |
| MS.gene059154 | MS.gene37928 | 0.822636 | 2.13E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCATTCAGCTTGTGATTT+TGG | 0.068002 | 3.3:-83243432 | MS.gene37928:CDS |
| CAGACCAAACATGGCACTTT+TGG | 0.192496 | 3.3:-83242661 | MS.gene37928:CDS |
| GTTCCACACGTTAAGGAATT+AGG | 0.206831 | 3.3:-83244262 | MS.gene37928:CDS |
| GGATTGCTTCTAGCTGCTTT+GGG | 0.237021 | 3.3:-83243276 | MS.gene37928:CDS |
| TCAACTCTTCATCATTGAAT+TGG | 0.253038 | 3.3:+83243337 | None:intergenic |
| TTGCTGTTTCCCAAGCTTAT+CGG | 0.280991 | 3.3:+83244162 | None:intergenic |
| TGGATTGCTTCTAGCTGCTT+TGG | 0.294168 | 3.3:-83243277 | MS.gene37928:CDS |
| CATCTTCATTTCGGCTTCTC+CGG | 0.300796 | 3.3:-83242884 | MS.gene37928:CDS |
| CTAAATACCGGCAGGTGATT+TGG | 0.320489 | 3.3:-83243380 | MS.gene37928:CDS |
| CAACTCTTCATCATTGAATT+GGG | 0.327093 | 3.3:+83243338 | None:intergenic |
| GAGACAATGGCCAAAGTTAA+TGG | 0.337935 | 3.3:-83242958 | MS.gene37928:CDS |
| GCACAGCGACATCTTCATTT+CGG | 0.365352 | 3.3:-83242893 | MS.gene37928:CDS |
| AGAAGCAATCCAATCTCTTC+GGG | 0.388321 | 3.3:+83243288 | None:intergenic |
| GAACTTTGTTCCACACGTTA+AGG | 0.393106 | 3.3:-83244269 | MS.gene37928:CDS |
| TTTCAGCGTGCGGTTCTTGA+TGG | 0.397111 | 3.3:-83242600 | MS.gene37928:CDS |
| ACCAAAATCACAAGCTGAAT+GGG | 0.400153 | 3.3:+83243431 | None:intergenic |
| TGATGAAGAGTTGAGAAATC+AGG | 0.404730 | 3.3:-83243328 | MS.gene37928:CDS |
| CGATGCCTTTCCATTAACTT+TGG | 0.411811 | 3.3:+83242948 | None:intergenic |
| CACCAAAATCACAAGCTGAA+TGG | 0.427593 | 3.3:+83243430 | None:intergenic |
| TAGAAGCAATCCAATCTCTT+CGG | 0.438821 | 3.3:+83243287 | None:intergenic |
| ATCTTCATTTCGGCTTCTCC+GGG | 0.439681 | 3.3:-83242883 | MS.gene37928:CDS |
| CCAAGCTTATCGGCTTCCTC+TGG | 0.444477 | 3.3:+83244172 | None:intergenic |
| CATCCAGCGTCTCCGTTGTA+AGG | 0.448928 | 3.3:-83244308 | MS.gene37928:CDS |
| CCACTGACTCCCGAAGAGAT+TGG | 0.458973 | 3.3:-83243297 | MS.gene37928:CDS |
| TGGCCCAAAAGTGCCATGTT+TGG | 0.467421 | 3.3:+83242657 | None:intergenic |
| AATAGTCATTTGATTCTGCT+TGG | 0.470389 | 3.3:+83244197 | None:intergenic |
| CCAGAGGAAGCCGATAAGCT+TGG | 0.472576 | 3.3:-83244172 | MS.gene37928:CDS |
| AGGTTTATGGTGGAAAAGCT+AGG | 0.473316 | 3.3:-83243041 | MS.gene37928:CDS |
| TGCTCTTATTCTGAAATAGC+TGG | 0.476445 | 3.3:+83242637 | None:intergenic |
| CTACACATGCAATCAGGAGC+AGG | 0.479880 | 3.3:+83242516 | None:intergenic |
| CAGAGGAAGCCGATAAGCTT+GGG | 0.483277 | 3.3:-83244171 | MS.gene37928:CDS |
| ATACCGGCAGGTGATTTGGC+AGG | 0.495911 | 3.3:-83243376 | MS.gene37928:CDS |
| TCTCATCGCTTGACATTCAA+CGG | 0.499133 | 3.3:-83244343 | MS.gene37928:CDS |
| TTATGGTGGAAAAGCTAGGT+TGG | 0.500381 | 3.3:-83243037 | MS.gene37928:CDS |
| TAAGCTCTACACATGCAATC+AGG | 0.507747 | 3.3:+83242510 | None:intergenic |
| GGGCAATATGCACAATGCTC+TGG | 0.515544 | 3.3:-83242863 | MS.gene37928:intron |
| AGCTTGGGAAACAGCAAAGC+GGG | 0.516102 | 3.3:-83244156 | MS.gene37928:CDS |
| GGGACAGATAAGATTAAGAA+AGG | 0.523765 | 3.3:-83242562 | MS.gene37928:CDS |
| AGCTGGGCAATAAACCTTGT+GGG | 0.537721 | 3.3:+83243221 | None:intergenic |
| TGCTCTAGCTAAATACCGGC+AGG | 0.538557 | 3.3:-83243388 | MS.gene37928:CDS |
| AACTTGCTCTAGCTAAATAC+CGG | 0.541940 | 3.3:-83243392 | MS.gene37928:CDS |
| GATGAAGAGTTGAGAAATCA+GGG | 0.542902 | 3.3:-83243327 | MS.gene37928:CDS |
| TTCCCTGCCAAATCACCTGC+CGG | 0.544202 | 3.3:+83243373 | None:intergenic |
| GATTGCTTCTAGCTGCTTTG+GGG | 0.545630 | 3.3:-83243275 | MS.gene37928:CDS |
| CCAATCTCTTCGGGAGTCAG+TGG | 0.550645 | 3.3:+83243297 | None:intergenic |
| AGAGCATTGTGCATATTGCC+CGG | 0.559884 | 3.3:+83242865 | None:intergenic |
| TGATGGACATAAGAACAGAC+AGG | 0.569668 | 3.3:-83242583 | MS.gene37928:CDS |
| TGACCTTACAACGGAGACGC+TGG | 0.575199 | 3.3:+83244305 | None:intergenic |
| TCTAGTCTCTGCAGAGACAA+TGG | 0.592187 | 3.3:-83242971 | MS.gene37928:CDS |
| CGGAGACGCTGGATGTCTGA+TGG | 0.599897 | 3.3:+83244316 | None:intergenic |
| TTCAGAATAAGAGCATAGGC+TGG | 0.602241 | 3.3:-83242629 | MS.gene37928:CDS |
| GAAGACTATCAGACCAAACA+TGG | 0.603497 | 3.3:-83242670 | MS.gene37928:CDS |
| TCTCCTAATTCCTTAACGTG+TGG | 0.606004 | 3.3:+83244259 | None:intergenic |
| AATGTCAAGCGATGAGAGAA+CGG | 0.606541 | 3.3:+83244349 | None:intergenic |
| TACCGGCAGGTGATTTGGCA+GGG | 0.608982 | 3.3:-83243375 | MS.gene37928:CDS |
| CTATTTCAGAATAAGAGCAT+AGG | 0.610443 | 3.3:-83242633 | MS.gene37928:CDS |
| CTGGTCAGAATTTCAGCGTG+CGG | 0.613267 | 3.3:-83242610 | MS.gene37928:CDS |
| GCGATGAGAGAACGGTGCAA+TGG | 0.614616 | 3.3:+83244357 | None:intergenic |
| TGTAGCGAAGACGCTGAACA+AGG | 0.614908 | 3.3:+83244233 | None:intergenic |
| ACTTTATCTTGCTTCCCACA+AGG | 0.615688 | 3.3:-83243235 | MS.gene37928:intron |
| CAATCTCTTCGGGAGTCAGT+GGG | 0.624514 | 3.3:+83243298 | None:intergenic |
| AATGGCCAAAGTTAATGGAA+AGG | 0.628911 | 3.3:-83242953 | MS.gene37928:CDS |
| TACACATGCAATCAGGAGCA+GGG | 0.643795 | 3.3:+83242517 | None:intergenic |
| ATCAAATGACTATTTGCCAG+AGG | 0.666329 | 3.3:-83244188 | MS.gene37928:CDS |
| CTTCAAAGTTGACCTTACAA+CGG | 0.697428 | 3.3:+83244296 | None:intergenic |
| GATGGACATAAGAACAGACA+GGG | 0.720717 | 3.3:-83242582 | MS.gene37928:CDS |
| ATGAAGAGTTGAGAAATCAG+GGG | 0.726296 | 3.3:-83243326 | MS.gene37928:CDS |
| AAGCTTGGGAAACAGCAAAG+CGG | 0.733658 | 3.3:-83244157 | MS.gene37928:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAATTGAAAAATTAT+TGG | + | chr3.3:83242985-83243004 | None:intergenic | 10.0% |
| !!! | TAAATTGTCATTTATATAAT+TGG | + | chr3.3:83243364-83243383 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTCAGAAAATTA+AGG | - | chr3.3:83243383-83243402 | MS.gene37928:CDS | 15.0% |
| !! | ATTTATATAATTGGATCACA+AGG | + | chr3.3:83243355-83243374 | None:intergenic | 20.0% |
| !!! | ATTCTATGTTTTTAGGTTTA+TGG | - | chr3.3:83243826-83243845 | MS.gene37928:intron | 20.0% |
| ! | TGTGATTACAGTATTATAAG+CGG | - | chr3.3:83242869-83242888 | MS.gene37928:CDS | 25.0% |
| ! | TTTCTATTAACTGCAGTTTA+AGG | - | chr3.3:83243304-83243323 | MS.gene37928:CDS | 25.0% |
| !! | ATGTGTTTAAAATTTGAACG+AGG | - | chr3.3:83243205-83243224 | MS.gene37928:intron | 25.0% |
| !! | CAAAAGATGTTTGGTTTAAA+CGG | + | chr3.3:83244155-83244174 | None:intergenic | 25.0% |
| !! | CTTGTCTTTCTAATTTTACT+TGG | - | chr3.3:83242828-83242847 | MS.gene37928:intron | 25.0% |
| !! | CTTTTCTTATCTTCCATAAA+AGG | + | chr3.3:83243889-83243908 | None:intergenic | 25.0% |
| !! | TGGTTTAAACGGTAAATTTT+GGG | + | chr3.3:83244144-83244163 | None:intergenic | 25.0% |
| !! | TTGGTTTAAACGGTAAATTT+TGG | + | chr3.3:83244145-83244164 | None:intergenic | 25.0% |
| !!! | GTCTGTTTTAAATACCTTTT+AGG | - | chr3.3:83243114-83243133 | MS.gene37928:intron | 25.0% |
| !!! | TGGATTGATTCTATGTTTTT+AGG | - | chr3.3:83243819-83243838 | MS.gene37928:intron | 25.0% |
| AATAGTCATTTGATTCTGCT+TGG | + | chr3.3:83242686-83242705 | None:intergenic | 30.0% | |
| CAACTCTTCATCATTGAATT+GGG | + | chr3.3:83243545-83243564 | None:intergenic | 30.0% | |
| GCCAGGATTCAAAAAATTAT+GGG | - | chr3.3:83242802-83242821 | MS.gene37928:intron | 30.0% | |
| TATAACCAGAACTCTACAAT+AGG | + | chr3.3:83243240-83243259 | None:intergenic | 30.0% | |
| TCAACTCTTCATCATTGAAT+TGG | + | chr3.3:83243546-83243565 | None:intergenic | 30.0% | |
| TGCCAGGATTCAAAAAATTA+TGG | - | chr3.3:83242801-83242820 | MS.gene37928:intron | 30.0% | |
| TTAAGGCTCCTGTTAATTAA+TGG | - | chr3.3:83243400-83243419 | MS.gene37928:CDS | 30.0% | |
| ! | CTATTTCAGAATAAGAGCAT+AGG | - | chr3.3:83244247-83244266 | MS.gene37928:CDS | 30.0% |
| ! | GGTTTAAACGGTAAATTTTG+GGG | + | chr3.3:83244143-83244162 | None:intergenic | 30.0% |
| !! | AAGCACGTTATTTCCTTTTA+TGG | - | chr3.3:83243873-83243892 | MS.gene37928:intron | 30.0% |
| !! | GTTTACTTTTGAACTTAGTC+TGG | - | chr3.3:83243799-83243818 | MS.gene37928:intron | 30.0% |
| !! | TAAGCGGAATATAGTTTGTT+AGG | - | chr3.3:83242885-83242904 | MS.gene37928:CDS | 30.0% |
| !!! | ACCCATAATTTTTTGAATCC+TGG | + | chr3.3:83242806-83242825 | None:intergenic | 30.0% |
| !!! | CTATGTTTTTAGGTTTATGG+TGG | - | chr3.3:83243829-83243848 | MS.gene37928:intron | 30.0% |
| AAGCTGTAGTTACACCTAAA+AGG | + | chr3.3:83243131-83243150 | None:intergenic | 35.0% | |
| AATATATCCTGTCATGAGCT+GGG | + | chr3.3:83243678-83243697 | None:intergenic | 35.0% | |
| AATGGCCAAAGTTAATGGAA+AGG | - | chr3.3:83243927-83243946 | MS.gene37928:intron | 35.0% | |
| ACCAAAATCACAAGCTGAAT+GGG | + | chr3.3:83243452-83243471 | None:intergenic | 35.0% | |
| ATCAAATGACTATTTGCCAG+AGG | - | chr3.3:83242692-83242711 | MS.gene37928:CDS | 35.0% | |
| ATGAAGAGTTGAGAAATCAG+GGG | - | chr3.3:83243554-83243573 | MS.gene37928:intron | 35.0% | |
| CACTGATGCTTCTACATAAA+AGG | - | chr3.3:83243083-83243102 | MS.gene37928:intron | 35.0% | |
| CTGAAGATGCAAAAGATGTT+TGG | + | chr3.3:83244164-83244183 | None:intergenic | 35.0% | |
| CTTCAAAGTTGACCTTACAA+CGG | + | chr3.3:83242587-83242606 | None:intergenic | 35.0% | |
| GATGAAGAGTTGAGAAATCA+GGG | - | chr3.3:83243553-83243572 | MS.gene37928:intron | 35.0% | |
| GGGACAGATAAGATTAAGAA+AGG | - | chr3.3:83244318-83244337 | MS.gene37928:CDS | 35.0% | |
| GTCAGTGACCATTAATTAAC+AGG | + | chr3.3:83243411-83243430 | None:intergenic | 35.0% | |
| TAGAAGCAATCCAATCTCTT+CGG | + | chr3.3:83243596-83243615 | None:intergenic | 35.0% | |
| TGATGAAGAGTTGAGAAATC+AGG | - | chr3.3:83243552-83243571 | MS.gene37928:intron | 35.0% | |
| ! | AACTTGCTCTAGCTAAATAC+CGG | - | chr3.3:83243488-83243507 | MS.gene37928:intron | 35.0% |
| ! | CAAACATCTTTTGCATCTTC+AGG | - | chr3.3:83244162-83244181 | MS.gene37928:CDS | 35.0% |
| !! | ATTCAGCTTGTGATTTTGGT+GGG | - | chr3.3:83243452-83243471 | MS.gene37928:intron | 35.0% |
| !! | TGCTCTTATTCTGAAATAGC+TGG | + | chr3.3:83244246-83244265 | None:intergenic | 35.0% |
| !!! | CTTTTATGTAGAAGCATCAG+TGG | + | chr3.3:83243085-83243104 | None:intergenic | 35.0% |
| AACCAGAACTCTACAATAGG+AGG | + | chr3.3:83243237-83243256 | None:intergenic | 40.0% | |
| AATGTCAAGCGATGAGAGAA+CGG | + | chr3.3:83242534-83242553 | None:intergenic | 40.0% | |
| ACTTTATCTTGCTTCCCACA+AGG | - | chr3.3:83243645-83243664 | MS.gene37928:intron | 40.0% | |
| AGAAGCAATCCAATCTCTTC+GGG | + | chr3.3:83243595-83243614 | None:intergenic | 40.0% | |
| ATCCTCCTATTGTAGAGTTC+TGG | - | chr3.3:83243232-83243251 | MS.gene37928:intron | 40.0% | |
| CAATATATCCTGTCATGAGC+TGG | + | chr3.3:83243679-83243698 | None:intergenic | 40.0% | |
| CACCAAAATCACAAGCTGAA+TGG | + | chr3.3:83243453-83243472 | None:intergenic | 40.0% | |
| CGATGCCTTTCCATTAACTT+TGG | + | chr3.3:83243935-83243954 | None:intergenic | 40.0% | |
| GAACTTTGTTCCACACGTTA+AGG | - | chr3.3:83242611-83242630 | MS.gene37928:CDS | 40.0% | |
| GAAGACTATCAGACCAAACA+TGG | - | chr3.3:83244210-83244229 | MS.gene37928:CDS | 40.0% | |
| GAGACAATGGCCAAAGTTAA+TGG | - | chr3.3:83243922-83243941 | MS.gene37928:intron | 40.0% | |
| GATGGACATAAGAACAGACA+GGG | - | chr3.3:83244298-83244317 | MS.gene37928:CDS | 40.0% | |
| GCTAATACATTCACACACAC+AGG | + | chr3.3:83243177-83243196 | None:intergenic | 40.0% | |
| GTTCCACACGTTAAGGAATT+AGG | - | chr3.3:83242618-83242637 | MS.gene37928:CDS | 40.0% | |
| TAAGCTCTACACATGCAATC+AGG | + | chr3.3:83244373-83244392 | None:intergenic | 40.0% | |
| TAGGTGTAACTACAGCTTGA+AGG | - | chr3.3:83243133-83243152 | MS.gene37928:intron | 40.0% | |
| TCTCATCGCTTGACATTCAA+CGG | - | chr3.3:83242537-83242556 | MS.gene37928:CDS | 40.0% | |
| TCTCCTAATTCCTTAACGTG+TGG | + | chr3.3:83242624-83242643 | None:intergenic | 40.0% | |
| TGTATTGCTGCAAGACATGT+AGG | - | chr3.3:83244113-83244132 | MS.gene37928:intron | 40.0% | |
| TTAGGCAACAACTTGCATGT+TGG | - | chr3.3:83242903-83242922 | MS.gene37928:CDS | 40.0% | |
| ! | ACATCTTTTGCATCTTCAGG+TGG | - | chr3.3:83244165-83244184 | MS.gene37928:CDS | 40.0% |
| ! | AGACCAAACATGGCACTTTT+GGG | - | chr3.3:83244220-83244239 | MS.gene37928:CDS | 40.0% |
| ! | AGGTTTATGGTGGAAAAGCT+AGG | - | chr3.3:83243839-83243858 | MS.gene37928:intron | 40.0% |
| ! | CATTCAGCTTGTGATTTTGG+TGG | - | chr3.3:83243451-83243470 | MS.gene37928:intron | 40.0% |
| ! | GTCTTCATTTGCATTTTGCC+AGG | - | chr3.3:83242785-83242804 | MS.gene37928:intron | 40.0% |
| ! | TGATGGACATAAGAACAGAC+AGG | - | chr3.3:83244297-83244316 | MS.gene37928:CDS | 40.0% |
| ! | TTATGGTGGAAAAGCTAGGT+TGG | - | chr3.3:83243843-83243862 | MS.gene37928:intron | 40.0% |
| ! | TTCAGAATAAGAGCATAGGC+TGG | - | chr3.3:83244251-83244270 | MS.gene37928:CDS | 40.0% |
| !! | TTCAGCTTGTGATTTTGGTG+GGG | - | chr3.3:83243453-83243472 | MS.gene37928:intron | 40.0% |
| !! | TTGCTGTTTCCCAAGCTTAT+CGG | + | chr3.3:83242721-83242740 | None:intergenic | 40.0% |
| AAGCTTGGGAAACAGCAAAG+CGG | - | chr3.3:83242723-83242742 | MS.gene37928:intron | 45.0% | |
| AGCTGGGCAATAAACCTTGT+GGG | + | chr3.3:83243662-83243681 | None:intergenic | 45.0% | |
| ATCTTCATTTCGGCTTCTCC+GGG | - | chr3.3:83243997-83244016 | MS.gene37928:intron | 45.0% | |
| CATCTTCATTTCGGCTTCTC+CGG | - | chr3.3:83243996-83244015 | MS.gene37928:intron | 45.0% | |
| CTAAATACCGGCAGGTGATT+TGG | - | chr3.3:83243500-83243519 | MS.gene37928:intron | 45.0% | |
| GCACAGCGACATCTTCATTT+CGG | - | chr3.3:83243987-83244006 | MS.gene37928:intron | 45.0% | |
| TAATGGTCACTGACATGTGC+AGG | - | chr3.3:83243417-83243436 | MS.gene37928:CDS | 45.0% | |
| TACACATGCAATCAGGAGCA+GGG | + | chr3.3:83244366-83244385 | None:intergenic | 45.0% | |
| TCACTGACATGTGCAGGATA+TGG | - | chr3.3:83243423-83243442 | MS.gene37928:CDS | 45.0% | |
| TCTAGTCTCTGCAGAGACAA+TGG | - | chr3.3:83243909-83243928 | MS.gene37928:intron | 45.0% | |
| TTTATTGCCCAGCTCATGAC+AGG | - | chr3.3:83243668-83243687 | MS.gene37928:intron | 45.0% | |
| ! | CAGACCAAACATGGCACTTT+TGG | - | chr3.3:83244219-83244238 | MS.gene37928:CDS | 45.0% |
| ! | GATTGCTTCTAGCTGCTTTG+GGG | - | chr3.3:83243605-83243624 | MS.gene37928:intron | 45.0% |
| ! | GCCCATTCAGCTTGTGATTT+TGG | - | chr3.3:83243448-83243467 | MS.gene37928:intron | 45.0% |
| ! | GGATTGCTTCTAGCTGCTTT+GGG | - | chr3.3:83243604-83243623 | MS.gene37928:intron | 45.0% |
| ! | TGGATTGCTTCTAGCTGCTT+TGG | - | chr3.3:83243603-83243622 | MS.gene37928:intron | 45.0% |
| !! | AGAGCATTGTGCATATTGCC+CGG | + | chr3.3:83244018-83244037 | None:intergenic | 45.0% |
| !! | TCAGCTTGTGATTTTGGTGG+GGG | - | chr3.3:83243454-83243473 | MS.gene37928:intron | 45.0% |
| AGCTTGGGAAACAGCAAAGC+GGG | - | chr3.3:83242724-83242743 | MS.gene37928:intron | 50.0% | |
| CAATCTCTTCGGGAGTCAGT+GGG | + | chr3.3:83243585-83243604 | None:intergenic | 50.0% | |
| CAGAGGAAGCCGATAAGCTT+GGG | - | chr3.3:83242709-83242728 | MS.gene37928:intron | 50.0% | |
| CTACACATGCAATCAGGAGC+AGG | + | chr3.3:83244367-83244386 | None:intergenic | 50.0% | |
| CTGGTCAGAATTTCAGCGTG+CGG | - | chr3.3:83244270-83244289 | MS.gene37928:CDS | 50.0% | |
| GAGCTGGGCAATAAACCTTG+TGG | + | chr3.3:83243663-83243682 | None:intergenic | 50.0% | |
| GGGCAATATGCACAATGCTC+TGG | - | chr3.3:83244017-83244036 | MS.gene37928:intron | 50.0% | |
| TGCTCTAGCTAAATACCGGC+AGG | - | chr3.3:83243492-83243511 | MS.gene37928:intron | 50.0% | |
| TGTAGCGAAGACGCTGAACA+AGG | + | chr3.3:83242650-83242669 | None:intergenic | 50.0% | |
| TTTCAGCGTGCGGTTCTTGA+TGG | - | chr3.3:83244280-83244299 | MS.gene37928:CDS | 50.0% | |
| !! | TGGCCCAAAAGTGCCATGTT+TGG | + | chr3.3:83244226-83244245 | None:intergenic | 50.0% |
| CATCCAGCGTCTCCGTTGTA+AGG | - | chr3.3:83242572-83242591 | MS.gene37928:CDS | 55.0% | |
| CCAATCTCTTCGGGAGTCAG+TGG | + | chr3.3:83243586-83243605 | None:intergenic | 55.0% | |
| CCAGAGGAAGCCGATAAGCT+TGG | - | chr3.3:83242708-83242727 | MS.gene37928:intron | 55.0% | |
| GCGATGAGAGAACGGTGCAA+TGG | + | chr3.3:83242526-83242545 | None:intergenic | 55.0% | |
| TGACCTTACAACGGAGACGC+TGG | + | chr3.3:83242578-83242597 | None:intergenic | 55.0% | |
| TTCCCTGCCAAATCACCTGC+CGG | + | chr3.3:83243510-83243529 | None:intergenic | 55.0% | |
| ! | ATACCGGCAGGTGATTTGGC+AGG | - | chr3.3:83243504-83243523 | MS.gene37928:intron | 55.0% |
| ! | TACCGGCAGGTGATTTGGCA+GGG | - | chr3.3:83243505-83243524 | MS.gene37928:intron | 55.0% |
| !! | CCAAGCTTATCGGCTTCCTC+TGG | + | chr3.3:83242711-83242730 | None:intergenic | 55.0% |
| !! | CCACTGACTCCCGAAGAGAT+TGG | - | chr3.3:83243583-83243602 | MS.gene37928:intron | 55.0% |
| CGGAGACGCTGGATGTCTGA+TGG | + | chr3.3:83242567-83242586 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83242509 | 83244393 | 83242509 | ID=MS.gene37928 |
| chr3.3 | mRNA | 83242509 | 83244393 | 83242509 | ID=MS.gene37928.t1;Parent=MS.gene37928 |
| chr3.3 | exon | 83244123 | 83244393 | 83244123 | ID=MS.gene37928.t1.exon1;Parent=MS.gene37928.t1 |
| chr3.3 | CDS | 83244123 | 83244393 | 83244123 | ID=cds.MS.gene37928.t1;Parent=MS.gene37928.t1 |
| chr3.3 | exon | 83243236 | 83243463 | 83243236 | ID=MS.gene37928.t1.exon2;Parent=MS.gene37928.t1 |
| chr3.3 | CDS | 83243236 | 83243463 | 83243236 | ID=cds.MS.gene37928.t1;Parent=MS.gene37928.t1 |
| chr3.3 | exon | 83242864 | 83243061 | 83242864 | ID=MS.gene37928.t1.exon3;Parent=MS.gene37928.t1 |
| chr3.3 | CDS | 83242864 | 83243061 | 83242864 | ID=cds.MS.gene37928.t1;Parent=MS.gene37928.t1 |
| chr3.3 | exon | 83242509 | 83242718 | 83242509 | ID=MS.gene37928.t1.exon4;Parent=MS.gene37928.t1 |
| chr3.3 | CDS | 83242509 | 83242718 | 83242509 | ID=cds.MS.gene37928.t1;Parent=MS.gene37928.t1 |
| Gene Sequence |
| Protein sequence |
