Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05638.t1 | XP_013460115.1 | 98.1 | 484 | 5 | 2 | 1 | 483 | 1 | 481 | 1.10E-245 | 859 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05638.t1 | F4KGE8 | 61.0 | 490 | 176 | 5 | 1 | 482 | 76 | 558 | 7.4e-147 | 521.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05638.t1 | A0A072UXH5 | 98.1 | 484 | 5 | 2 | 1 | 483 | 1 | 481 | 7.7e-246 | 859.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene05638 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene05638 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene05638 | MS.gene061840 | 0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene05638 | MS.gene063163 | 0.820694 | 5.99E-53 | -1.69E-46 |
| MS.gene05638 | MS.gene071315 | 0.811962 | 5.39E-51 | -1.69E-46 |
| MS.gene05638 | MS.gene071316 | 0.810399 | 1.18E-50 | -1.69E-46 |
| MS.gene05638 | MS.gene26677 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene05638 | MS.gene37928 | 0.828276 | 9.84E-55 | -1.69E-46 |
| MS.gene05638 | MS.gene68220 | 0.825413 | 4.75E-54 | -1.69E-46 |
| MS.gene05638 | MS.gene68886 | 0.816652 | 4.95E-52 | -1.69E-46 |
| MS.gene05638 | MS.gene71771 | 0.818589 | 1.81E-52 | -1.69E-46 |
| MS.gene05638 | MS.gene75202 | 0.819089 | 1.39E-52 | -1.69E-46 |
| MS.gene05638 | MS.gene97762 | 0.813721 | 2.22E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05638.t1 | MTR_3g462150 | 97.934 | 484 | 6 | 2 | 1 | 483 | 1 | 481 | 0.0 | 974 |
| MS.gene05638.t1 | MTR_4g025420 | 34.146 | 410 | 218 | 10 | 90 | 479 | 35 | 412 | 3.43e-72 | 234 |
| MS.gene05638.t1 | MTR_8g087400 | 29.561 | 433 | 267 | 10 | 61 | 479 | 50 | 458 | 2.26e-52 | 184 |
| MS.gene05638.t1 | MTR_2g075910 | 31.281 | 406 | 245 | 11 | 91 | 483 | 73 | 457 | 2.22e-50 | 179 |
| MS.gene05638.t1 | MTR_8g059485 | 30.730 | 397 | 244 | 10 | 91 | 479 | 63 | 436 | 2.98e-49 | 175 |
| MS.gene05638.t1 | MTR_8g059485 | 30.730 | 397 | 244 | 10 | 91 | 479 | 72 | 445 | 4.26e-49 | 175 |
| MS.gene05638.t1 | MTR_0178s0030 | 30.273 | 403 | 240 | 8 | 93 | 479 | 145 | 522 | 9.12e-45 | 164 |
| MS.gene05638.t1 | MTR_5g075180 | 30.280 | 393 | 228 | 8 | 92 | 479 | 88 | 439 | 1.27e-44 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05638.t1 | AT5G58960 | 62.398 | 492 | 168 | 7 | 1 | 483 | 1 | 484 | 0.0 | 558 |
| MS.gene05638.t1 | AT5G58960 | 62.398 | 492 | 168 | 7 | 1 | 483 | 1 | 484 | 0.0 | 558 |
| MS.gene05638.t1 | AT5G58960 | 62.398 | 492 | 168 | 7 | 1 | 483 | 76 | 559 | 0.0 | 556 |
| MS.gene05638.t1 | AT2G45260 | 33.824 | 408 | 227 | 8 | 90 | 479 | 36 | 418 | 1.68e-73 | 238 |
| MS.gene05638.t1 | AT3G14870 | 31.683 | 404 | 239 | 10 | 90 | 479 | 82 | 462 | 1.03e-53 | 187 |
| MS.gene05638.t1 | AT3G14870 | 31.188 | 404 | 241 | 9 | 90 | 479 | 81 | 461 | 1.25e-53 | 187 |
| MS.gene05638.t1 | AT3G14870 | 31.188 | 404 | 241 | 9 | 90 | 479 | 81 | 461 | 1.25e-53 | 187 |
| MS.gene05638.t1 | AT3G14870 | 31.188 | 404 | 241 | 9 | 90 | 479 | 81 | 461 | 1.25e-53 | 187 |
| MS.gene05638.t1 | AT3G14870 | 31.683 | 404 | 239 | 10 | 90 | 479 | 85 | 465 | 1.37e-53 | 187 |
| MS.gene05638.t1 | AT1G29300 | 33.416 | 404 | 218 | 12 | 90 | 479 | 85 | 451 | 1.44e-51 | 181 |
| MS.gene05638.t1 | AT1G53380 | 29.676 | 401 | 254 | 7 | 90 | 479 | 67 | 450 | 1.85e-50 | 178 |
| MS.gene05638.t1 | AT1G53380 | 29.676 | 401 | 254 | 7 | 90 | 479 | 67 | 450 | 1.85e-50 | 178 |
| MS.gene05638.t1 | AT1G53380 | 29.676 | 401 | 254 | 7 | 90 | 479 | 67 | 450 | 1.85e-50 | 178 |
| MS.gene05638.t1 | AT1G53380 | 29.676 | 401 | 254 | 7 | 90 | 479 | 67 | 450 | 1.85e-50 | 178 |
| MS.gene05638.t1 | AT1G53380 | 29.676 | 401 | 254 | 7 | 90 | 479 | 67 | 450 | 1.85e-50 | 178 |
| MS.gene05638.t1 | AT3G60680 | 29.953 | 424 | 245 | 10 | 75 | 479 | 103 | 493 | 2.78e-50 | 179 |
| MS.gene05638.t1 | AT2G30380 | 32.741 | 394 | 198 | 12 | 94 | 479 | 76 | 410 | 3.25e-44 | 160 |
| MS.gene05638.t1 | AT4G34080 | 27.211 | 294 | 173 | 6 | 90 | 366 | 12 | 281 | 8.77e-33 | 126 |
| MS.gene05638.t1 | AT4G33320 | 26.667 | 300 | 178 | 7 | 90 | 371 | 12 | 287 | 6.73e-29 | 115 |
| MS.gene05638.t1 | AT5G12900 | 25.926 | 324 | 193 | 12 | 152 | 465 | 257 | 543 | 4.41e-11 | 65.5 |
| MS.gene05638.t1 | AT4G36100 | 44.068 | 59 | 33 | 0 | 90 | 148 | 12 | 70 | 6.06e-11 | 63.2 |
Find 126 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGATCCTGCTGAGCTTCT+TGG | 0.231526 | 3.2:-53186870 | MS.gene05638:CDS |
| GTGCCAGCTGGTCAGGTTGT+AGG | 0.282373 | 3.2:-53186552 | MS.gene05638:CDS |
| AACAACGACTCTTCCATCTT+TGG | 0.284369 | 3.2:+53186786 | None:intergenic |
| AGCTTAAATCCAGGACTAAC+TGG | 0.284394 | 3.2:+53186525 | None:intergenic |
| TCCTGGGGTGGTTTCCTGCT+TGG | 0.285355 | 3.2:+53186736 | None:intergenic |
| AAAGCAAATGGAAGCATTAA+TGG | 0.287144 | 3.2:-53188199 | MS.gene05638:CDS |
| CGATCATGAAACTTTCTATA+TGG | 0.321609 | 3.2:-53186970 | MS.gene05638:CDS |
| CTGTGTTGAGAGAGAGGTTT+CGG | 0.322230 | 3.2:-53188047 | MS.gene05638:CDS |
| TTTGAAACCTTTCTCGTCAT+TGG | 0.325126 | 3.2:+53188462 | None:intergenic |
| TGGATCCTGCTGAGCTTCTT+GGG | 0.330421 | 3.2:-53186869 | MS.gene05638:CDS |
| CCCTTAAAACATTTAAGTTC+TGG | 0.332741 | 3.2:+53186461 | None:intergenic |
| TGGGCGGGTGCCAGCTGGTC+AGG | 0.333732 | 3.2:-53186559 | MS.gene05638:CDS |
| ATGAAGCAACCATACAGTTT+TGG | 0.367698 | 3.2:+53186683 | None:intergenic |
| GTTGTTGCTCTTTCTAATAA+TGG | 0.378913 | 3.2:-53187865 | MS.gene05638:CDS |
| TCCGGTGGGCGGGTGCCAGC+TGG | 0.383399 | 3.2:-53186564 | MS.gene05638:CDS |
| GGTGGTCGGAGAAGAGGTTT+TGG | 0.384786 | 3.2:-53188003 | MS.gene05638:CDS |
| TGAGTTCCATCCACAGTATA+TGG | 0.389849 | 3.2:-53186604 | MS.gene05638:CDS |
| GAAGAATGAAGTGAAGGTTA+AGG | 0.391718 | 3.2:-53187926 | MS.gene05638:CDS |
| AAACAACTATGGTGCAAGTA+AGG | 0.393670 | 3.2:-53187196 | MS.gene05638:CDS |
| TGCTGACGTGGCGGTTGTTA+CGG | 0.393694 | 3.2:-53188085 | MS.gene05638:CDS |
| AGTTGGCTGTGTTGAGAGAG+AGG | 0.405023 | 3.2:-53188053 | MS.gene05638:CDS |
| GACATGAAGCGGTGACCCTT+TGG | 0.409014 | 3.2:+53188424 | None:intergenic |
| TTAGTCCTGGATTTAAGCTT+GGG | 0.409214 | 3.2:-53186521 | MS.gene05638:CDS |
| TTCATTGTAAAACTCACTCC+TGG | 0.421633 | 3.2:+53186719 | None:intergenic |
| ATAGTTGTTTCAAATAGTTC+TGG | 0.422574 | 3.2:+53187209 | None:intergenic |
| AGAACTATTTGAAACAACTA+TGG | 0.426963 | 3.2:-53187207 | MS.gene05638:CDS |
| TGCCAGCTGGTCAGGTTGTA+GGG | 0.430750 | 3.2:-53186551 | MS.gene05638:CDS |
| AGAGAGAGGTTTCGGAGGAA+TGG | 0.437415 | 3.2:-53188039 | MS.gene05638:CDS |
| GACGAAGATGAGGATGAAAA+AGG | 0.440852 | 3.2:-53188288 | MS.gene05638:CDS |
| AAGAGAAAACTAGGAATTCA+AGG | 0.442283 | 3.2:-53187808 | MS.gene05638:intron |
| AAGATGGAAGAGTCGTTGTT+TGG | 0.442659 | 3.2:-53186783 | MS.gene05638:CDS |
| ATGGATCTGTTGTAAAATCC+AGG | 0.445843 | 3.2:-53186497 | MS.gene05638:CDS |
| GTAGGGTTTCCAGTTAGTCC+TGG | 0.454644 | 3.2:-53186534 | MS.gene05638:CDS |
| TCTAATGCACAATGCACATT+GGG | 0.456485 | 3.2:-53187138 | MS.gene05638:CDS |
| CAATCACGGCGAAACTGATC+AGG | 0.457004 | 3.2:+53186921 | None:intergenic |
| TAGGGTTGGCCAAAACTGTA+TGG | 0.457586 | 3.2:-53186692 | MS.gene05638:CDS |
| GTTAGTCCTGGATTTAAGCT+TGG | 0.463063 | 3.2:-53186522 | MS.gene05638:CDS |
| GCCTCAAATTGACTTGGTGG+AGG | 0.466137 | 3.2:+53186639 | None:intergenic |
| CCTCAAATTGACTTGGTGGA+GGG | 0.471972 | 3.2:+53186640 | None:intergenic |
| CTCTTAGATTGAGACCTCCC+AGG | 0.476445 | 3.2:+53187826 | None:intergenic |
| TGCCATTGTTCATCCAAAGA+TGG | 0.479244 | 3.2:-53186799 | MS.gene05638:CDS |
| GGTTAAGGATTTAGAAGTGA+AGG | 0.480570 | 3.2:-53187911 | MS.gene05638:CDS |
| ATATCGAGGAAAATCTTTCA+AGG | 0.484464 | 3.2:-53186996 | MS.gene05638:CDS |
| CGACTTGCCTCAAATTGACT+TGG | 0.486173 | 3.2:+53186633 | None:intergenic |
| AACCCTACAACCTGACCAGC+TGG | 0.487016 | 3.2:+53186549 | None:intergenic |
| AGGAATGGTGGTGGTAGGAA+AGG | 0.489638 | 3.2:-53188024 | MS.gene05638:CDS |
| GATTTGAAAGAGAAGCTTGA+AGG | 0.493676 | 3.2:-53187889 | MS.gene05638:CDS |
| CCTGGATTTAAGCTTGGGAA+TGG | 0.494040 | 3.2:-53186516 | MS.gene05638:CDS |
| GGTAGTGGTGAAAAGAAACC+TGG | 0.495329 | 3.2:-53187844 | MS.gene05638:CDS |
| CCCTCCACCAAGTCAATTTG+AGG | 0.496125 | 3.2:-53186640 | MS.gene05638:CDS |
| TCCAAGCAGGAAACCACCCC+AGG | 0.499560 | 3.2:-53186737 | MS.gene05638:CDS |
| ACCAGCTGGCACCCGCCCAC+CGG | 0.500037 | 3.2:+53186563 | None:intergenic |
| CACTATCCATATACTGTGGA+TGG | 0.500777 | 3.2:+53186598 | None:intergenic |
| TCTCAATCTAAGAGAAAACT+AGG | 0.501214 | 3.2:-53187817 | MS.gene05638:CDS |
| ATTCAACGAAGACAAAATGA+TGG | 0.510894 | 3.2:-53188241 | MS.gene05638:CDS |
| GAGAGGTTTCGGAGGAATGG+TGG | 0.511830 | 3.2:-53188036 | MS.gene05638:CDS |
| AGGAAAGGTGGTCGGAGAAG+AGG | 0.512189 | 3.2:-53188009 | MS.gene05638:CDS |
| TCTTCAATTATCTTCCTCAC+TGG | 0.514432 | 3.2:+53188384 | None:intergenic |
| AAAATCCCAAGAAGCTCAGC+AGG | 0.514756 | 3.2:+53186864 | None:intergenic |
| ATCTTCCTCACTGGAACAAG+TGG | 0.515781 | 3.2:+53188393 | None:intergenic |
| CTCTAATGCACAATGCACAT+TGG | 0.523721 | 3.2:-53187139 | MS.gene05638:CDS |
| GCCGTATGAAGCAGTGGTGG+AGG | 0.527747 | 3.2:-53187953 | MS.gene05638:CDS |
| AATGGTGGTGGTAGGAAAGG+TGG | 0.530582 | 3.2:-53188021 | MS.gene05638:CDS |
| AAGAAGCTCAGCAGGATCCA+TGG | 0.530759 | 3.2:+53186872 | None:intergenic |
| GTTTCAAATAGTTCTGGTGT+AGG | 0.534867 | 3.2:+53187215 | None:intergenic |
| CTTGCCTCAAATTGACTTGG+TGG | 0.539358 | 3.2:+53186636 | None:intergenic |
| TCACTGGAACAAGTGGGTTG+AGG | 0.540794 | 3.2:+53188400 | None:intergenic |
| GGCGTCGGTGAGGGAGGTTG+TGG | 0.540946 | 3.2:-53187977 | MS.gene05638:CDS |
| AATGGAAGAAATCTTCGAAA+CGG | 0.543142 | 3.2:-53188181 | MS.gene05638:CDS |
| AACTCAACCAATGACGAGAA+AGG | 0.543640 | 3.2:-53188469 | None:intergenic |
| CATGAAACTTTCTATATGGA+TGG | 0.544853 | 3.2:-53186966 | MS.gene05638:CDS |
| TGTTACGGAGCTGAGGAAGT+TGG | 0.547810 | 3.2:-53188070 | MS.gene05638:CDS |
| GCTCTTTCTAATAATGGTAG+TGG | 0.548165 | 3.2:-53187859 | MS.gene05638:CDS |
| TCATTGTAAAACTCACTCCT+GGG | 0.554453 | 3.2:+53186720 | None:intergenic |
| GAAGATGAGGGTTGCTGACG+TGG | 0.554854 | 3.2:-53188097 | MS.gene05638:CDS |
| ATACAAGGATATGAAGTCCA+TGG | 0.554965 | 3.2:-53186889 | MS.gene05638:CDS |
| GGAGTTGAAGAATGAAGTGA+AGG | 0.558888 | 3.2:-53187932 | MS.gene05638:CDS |
| TGGTGTGGCGTCGGTGAGGG+AGG | 0.559820 | 3.2:-53187983 | MS.gene05638:CDS |
| CTCATCTTCTCTGCATCCCA+CGG | 0.564141 | 3.2:+53188111 | None:intergenic |
| CAGGATTGAGGAGGGATGAG+AGG | 0.565482 | 3.2:+53186940 | None:intergenic |
| CCATTCCCAAGCTTAAATCC+AGG | 0.570658 | 3.2:+53186516 | None:intergenic |
| TCCTCCACCACTGCTTCATA+CGG | 0.572088 | 3.2:+53187952 | None:intergenic |
| AGATAAAAGCATAGATGTGA+AGG | 0.572469 | 3.2:+53187160 | None:intergenic |
| TATCGAGGAAAATCTTTCAA+GGG | 0.572592 | 3.2:-53186995 | MS.gene05638:CDS |
| AACAACTATGGTGCAAGTAA+GGG | 0.573152 | 3.2:-53187195 | MS.gene05638:CDS |
| ATTTCTCCGATCTGATCCAA+AGG | 0.573461 | 3.2:-53188440 | MS.gene05638:CDS |
| TTCGGAGGAATGGTGGTGGT+AGG | 0.576057 | 3.2:-53188029 | MS.gene05638:CDS |
| CGTGGGATGCAGAGAAGATG+AGG | 0.576720 | 3.2:-53188110 | MS.gene05638:CDS |
| AGGTTTCGGAGGAATGGTGG+TGG | 0.578118 | 3.2:-53188033 | MS.gene05638:CDS |
| TGTATTGAGTGAAGCAATCA+CGG | 0.580907 | 3.2:+53186907 | None:intergenic |
| GGCGAAACTGATCAGGATTG+AGG | 0.583759 | 3.2:+53186928 | None:intergenic |
| TTCCATCTTTGGATGAACAA+TGG | 0.584376 | 3.2:+53186797 | None:intergenic |
| AATCAAGTGCATACTTAGCA+TGG | 0.590253 | 3.2:+53187024 | None:intergenic |
| CAGCACGGTCAAGTCCAAGC+AGG | 0.591086 | 3.2:-53186750 | MS.gene05638:CDS |
| TTTCTCCGATCTGATCCAAA+GGG | 0.592192 | 3.2:-53188439 | MS.gene05638:CDS |
| TTCAACGAAGACAAAATGAT+GGG | 0.602829 | 3.2:-53188240 | MS.gene05638:CDS |
| AGTCAATTTGAGGCAAGTCG+TGG | 0.609506 | 3.2:-53186630 | MS.gene05638:CDS |
| TCTGGCTATCAAATATACCC+TGG | 0.612671 | 3.2:+53186479 | None:intergenic |
| TGTAAAACTCACTCCTGGGG+TGG | 0.613108 | 3.2:+53186724 | None:intergenic |
| TGATTGCTTCACTCAATACA+AGG | 0.613182 | 3.2:-53186904 | MS.gene05638:CDS |
| GTGGTGGTAGGAAAGGTGGT+CGG | 0.614967 | 3.2:-53188017 | MS.gene05638:CDS |
| CACTTGATTCCTATATATCG+AGG | 0.615079 | 3.2:-53187010 | MS.gene05638:CDS |
| TGGATCTGTTGTAAAATCCA+GGG | 0.622939 | 3.2:-53186496 | MS.gene05638:CDS |
| TCCACAGTATATGGATAGTG+TGG | 0.626365 | 3.2:-53186595 | MS.gene05638:CDS |
| AAACTGATCAGGATTGAGGA+GGG | 0.627461 | 3.2:+53186932 | None:intergenic |
| GAAACTGATCAGGATTGAGG+AGG | 0.628809 | 3.2:+53186931 | None:intergenic |
| TGGCGGTTGTTACGGAGCTG+AGG | 0.633993 | 3.2:-53188077 | MS.gene05638:CDS |
| TTTGGTAACTTAGAGCAGCA+CGG | 0.643785 | 3.2:-53186765 | MS.gene05638:CDS |
| TGTGGCGCCGTATGAAGCAG+TGG | 0.652115 | 3.2:-53187959 | MS.gene05638:CDS |
| GGTGACCCTTTGGATCAGAT+CGG | 0.655253 | 3.2:+53188434 | None:intergenic |
| TCTTCCTCACTGGAACAAGT+GGG | 0.657805 | 3.2:+53188394 | None:intergenic |
| GGCGCCGTATGAAGCAGTGG+TGG | 0.660336 | 3.2:-53187956 | MS.gene05638:CDS |
| ACAAGAAGCGCATTCACCGT+GGG | 0.661788 | 3.2:-53188127 | MS.gene05638:CDS |
| TACAAGAAGCGCATTCACCG+TGG | 0.661802 | 3.2:-53188128 | MS.gene05638:CDS |
| TGTTGAGAGAGAGGTTTCGG+AGG | 0.661905 | 3.2:-53188044 | MS.gene05638:CDS |
| TCTTTGGATGAACAATGGCA+AGG | 0.673047 | 3.2:+53186802 | None:intergenic |
| TGTTGATGATGACGAAGATG+AGG | 0.673325 | 3.2:-53188298 | MS.gene05638:CDS |
| GTGGGATGCAGAGAAGATGA+GGG | 0.673755 | 3.2:-53188109 | MS.gene05638:CDS |
| ACCACACTATCCATATACTG+TGG | 0.681895 | 3.2:+53186594 | None:intergenic |
| CATTGTAAAACTCACTCCTG+GGG | 0.682589 | 3.2:+53186721 | None:intergenic |
| TGGGTTGAGGAGACATGAAG+CGG | 0.686959 | 3.2:+53188413 | None:intergenic |
| TCAACCCACTTGTTCCAGTG+AGG | 0.695744 | 3.2:-53188398 | MS.gene05638:CDS |
| GTAGTGGTGAAAAGAAACCT+GGG | 0.699313 | 3.2:-53187843 | MS.gene05638:CDS |
| GATGAGGGTTGCTGACGTGG+CGG | 0.712629 | 3.2:-53188094 | MS.gene05638:CDS |
| AGCATGGTGAGATGAGACAA+TGG | 0.732639 | 3.2:+53187040 | None:intergenic |
| GTGGTGAAAAGAAACCTGGG+AGG | 0.793187 | 3.2:-53187840 | MS.gene05638:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAAAAACAAAAACAA+AGG | + | chr3.2:53187165-53187184 | None:intergenic | 15.0% |
| !!! | AGTTTTACAATGAATTTTTA+GGG | - | chr3.2:53188222-53188241 | MS.gene05638:CDS | 15.0% |
| !!! | TTTTGGAATATAACTTAAAA+GGG | - | chr3.2:53187563-53187582 | MS.gene05638:intron | 15.0% |
| !!! | TTTTGGAATATAATTCTAAA+GGG | - | chr3.2:53187377-53187396 | MS.gene05638:intron | 15.0% |
| !! | TAATCCAAAAGTTACTTATT+TGG | - | chr3.2:53187420-53187439 | MS.gene05638:intron | 20.0% |
| !!! | AAAGTTACTTATTTGGAATT+TGG | - | chr3.2:53187427-53187446 | MS.gene05638:intron | 20.0% |
| !!! | AATTCCAAATAAGTAACTTT+TGG | + | chr3.2:53187427-53187446 | None:intergenic | 20.0% |
| !!! | CTTTTGGAATATAACTTAAA+AGG | - | chr3.2:53187562-53187581 | MS.gene05638:intron | 20.0% |
| !!! | CTTTTGGAATATAATTCTAA+AGG | - | chr3.2:53187376-53187395 | MS.gene05638:intron | 20.0% |
| !!! | GAGTTTTACAATGAATTTTT+AGG | - | chr3.2:53188221-53188240 | MS.gene05638:CDS | 20.0% |
| !!! | TTTGGAATATAACTTAAAAG+GGG | - | chr3.2:53187564-53187583 | MS.gene05638:intron | 20.0% |
| ! | CTTCAAGAAACTATTAACTT+TGG | + | chr3.2:53187615-53187634 | None:intergenic | 25.0% |
| !! | AAAGATTTTCCTCGATATAT+AGG | + | chr3.2:53187934-53187953 | None:intergenic | 25.0% |
| !! | AGAACTATTTGAAACAACTA+TGG | - | chr3.2:53187725-53187744 | MS.gene05638:intron | 25.0% |
| !! | ATAGTTGTTTCAAATAGTTC+TGG | + | chr3.2:53187726-53187745 | None:intergenic | 25.0% |
| !! | TCACAAAGTTTCTTTTTGTT+TGG | - | chr3.2:53187271-53187290 | MS.gene05638:intron | 25.0% |
| !! | TGTGTTTCATGTTTAGAATT+TGG | - | chr3.2:53187205-53187224 | MS.gene05638:CDS | 25.0% |
| !!! | TGCTTATTTGATTTTGCTTT+TGG | - | chr3.2:53187360-53187379 | MS.gene05638:intron | 25.0% |
| !!! | TTACAATGAATTTTTAGGGT+TGG | - | chr3.2:53188226-53188245 | MS.gene05638:CDS | 25.0% |
| AAGAGAAAACTAGGAATTCA+AGG | - | chr3.2:53187124-53187143 | MS.gene05638:CDS | 30.0% | |
| AATGGAAGAAATCTTCGAAA+CGG | - | chr3.2:53186751-53186770 | MS.gene05638:CDS | 30.0% | |
| ATATCGAGGAAAATCTTTCA+AGG | - | chr3.2:53187936-53187955 | MS.gene05638:CDS | 30.0% | |
| ATTCAACGAAGACAAAATGA+TGG | - | chr3.2:53186691-53186710 | MS.gene05638:CDS | 30.0% | |
| CATGAAACTTTCTATATGGA+TGG | - | chr3.2:53187966-53187985 | MS.gene05638:CDS | 30.0% | |
| CGATCATGAAACTTTCTATA+TGG | - | chr3.2:53187962-53187981 | MS.gene05638:CDS | 30.0% | |
| CTTGAAGATGAAATGAATTG+AGG | - | chr3.2:53187628-53187647 | MS.gene05638:intron | 30.0% | |
| GTTGTTGCTCTTTCTAATAA+TGG | - | chr3.2:53187067-53187086 | MS.gene05638:CDS | 30.0% | |
| TATCGAGGAAAATCTTTCAA+GGG | - | chr3.2:53187937-53187956 | MS.gene05638:CDS | 30.0% | |
| TCTCAATCTAAGAGAAAACT+AGG | - | chr3.2:53187115-53187134 | MS.gene05638:CDS | 30.0% | |
| TTCAACGAAGACAAAATGAT+GGG | - | chr3.2:53186692-53186711 | MS.gene05638:CDS | 30.0% | |
| ! | AATTTTCCAAAGTGACATGT+TGG | + | chr3.2:53188095-53188114 | None:intergenic | 30.0% |
| ! | AGATAAAAGCATAGATGTGA+AGG | + | chr3.2:53187775-53187794 | None:intergenic | 30.0% |
| !! | AAAGCAAATGGAAGCATTAA+TGG | - | chr3.2:53186733-53186752 | MS.gene05638:CDS | 30.0% |
| !! | ATTTTACCAACATGTCACTT+TGG | - | chr3.2:53188086-53188105 | MS.gene05638:CDS | 30.0% |
| !! | GATTTTGAAGGTAAAGCAAA+TGG | - | chr3.2:53186721-53186740 | MS.gene05638:CDS | 30.0% |
| !! | TGTTTTCTTCTGATTCGTAA+GGG | + | chr3.2:53186580-53186599 | None:intergenic | 30.0% |
| !!! | TTCAGAGTGATTTTAGCTTT+TGG | - | chr3.2:53187546-53187565 | MS.gene05638:intron | 30.0% |
| AAACAACTATGGTGCAAGTA+AGG | - | chr3.2:53187736-53187755 | MS.gene05638:intron | 35.0% | |
| AACAACTATGGTGCAAGTAA+GGG | - | chr3.2:53187737-53187756 | MS.gene05638:intron | 35.0% | |
| AATCAAGTGCATACTTAGCA+TGG | + | chr3.2:53187911-53187930 | None:intergenic | 35.0% | |
| ATACAAGGATATGAAGTCCA+TGG | - | chr3.2:53188043-53188062 | MS.gene05638:CDS | 35.0% | |
| ATGGATCTGTTGTAAAATCC+AGG | - | chr3.2:53188435-53188454 | MS.gene05638:CDS | 35.0% | |
| CACTTGATTCCTATATATCG+AGG | - | chr3.2:53187922-53187941 | MS.gene05638:CDS | 35.0% | |
| GAAGAATGAAGTGAAGGTTA+AGG | - | chr3.2:53187006-53187025 | MS.gene05638:CDS | 35.0% | |
| GATTTGAAAGAGAAGCTTGA+AGG | - | chr3.2:53187043-53187062 | MS.gene05638:CDS | 35.0% | |
| GCTCTTTCTAATAATGGTAG+TGG | - | chr3.2:53187073-53187092 | MS.gene05638:CDS | 35.0% | |
| GGTTAAGGATTTAGAAGTGA+AGG | - | chr3.2:53187021-53187040 | MS.gene05638:CDS | 35.0% | |
| TCATTGTAAAACTCACTCCT+GGG | + | chr3.2:53188215-53188234 | None:intergenic | 35.0% | |
| TCTAATGCACAATGCACATT+GGG | - | chr3.2:53187794-53187813 | MS.gene05638:intron | 35.0% | |
| TCTTCAATTATCTTCCTCAC+TGG | + | chr3.2:53186551-53186570 | None:intergenic | 35.0% | |
| TGATTGCTTCACTCAATACA+AGG | - | chr3.2:53188028-53188047 | MS.gene05638:CDS | 35.0% | |
| TGGATCTGTTGTAAAATCCA+GGG | - | chr3.2:53188436-53188455 | MS.gene05638:CDS | 35.0% | |
| TGTATTGAGTGAAGCAATCA+CGG | + | chr3.2:53188028-53188047 | None:intergenic | 35.0% | |
| TTAGTCCTGGATTTAAGCTT+GGG | - | chr3.2:53188411-53188430 | MS.gene05638:CDS | 35.0% | |
| TTCATTGTAAAACTCACTCC+TGG | + | chr3.2:53188216-53188235 | None:intergenic | 35.0% | |
| TTCCATCTTTGGATGAACAA+TGG | + | chr3.2:53188138-53188157 | None:intergenic | 35.0% | |
| ! | ATGAAGCAACCATACAGTTT+TGG | + | chr3.2:53188252-53188271 | None:intergenic | 35.0% |
| ! | GATAGTGTGGTGAAATTTTC+CGG | - | chr3.2:53188350-53188369 | MS.gene05638:CDS | 35.0% |
| ! | GATGGGTATGAAGATTTTGA+AGG | - | chr3.2:53186709-53186728 | MS.gene05638:CDS | 35.0% |
| !! | AATTCGTCATTTTCCTCCAA+AGG | + | chr3.2:53186674-53186693 | None:intergenic | 35.0% |
| !! | ATTCGTCATTTTCCTCCAAA+GGG | + | chr3.2:53186673-53186692 | None:intergenic | 35.0% |
| !! | CTGTTTTCTTCTGATTCGTA+AGG | + | chr3.2:53186581-53186600 | None:intergenic | 35.0% |
| !! | GTTTCAAATAGTTCTGGTGT+AGG | + | chr3.2:53187720-53187739 | None:intergenic | 35.0% |
| !! | GTTTTCTTCTGATTCGTAAG+GGG | + | chr3.2:53186579-53186598 | None:intergenic | 35.0% |
| AAACTGATCAGGATTGAGGA+GGG | + | chr3.2:53188003-53188022 | None:intergenic | 40.0% | |
| AACAACGACTCTTCCATCTT+TGG | + | chr3.2:53188149-53188168 | None:intergenic | 40.0% | |
| AAGATGGAAGAGTCGTTGTT+TGG | - | chr3.2:53188149-53188168 | MS.gene05638:CDS | 40.0% | |
| ACCACACTATCCATATACTG+TGG | + | chr3.2:53188341-53188360 | None:intergenic | 40.0% | |
| AGCTTAAATCCAGGACTAAC+TGG | + | chr3.2:53188410-53188429 | None:intergenic | 40.0% | |
| ATTTCTCCGATCTGATCCAA+AGG | - | chr3.2:53186492-53186511 | MS.gene05638:CDS | 40.0% | |
| CACTATCCATATACTGTGGA+TGG | + | chr3.2:53188337-53188356 | None:intergenic | 40.0% | |
| CATTGTAAAACTCACTCCTG+GGG | + | chr3.2:53188214-53188233 | None:intergenic | 40.0% | |
| CTCTAATGCACAATGCACAT+TGG | - | chr3.2:53187793-53187812 | MS.gene05638:intron | 40.0% | |
| GACGAAGATGAGGATGAAAA+AGG | - | chr3.2:53186644-53186663 | MS.gene05638:CDS | 40.0% | |
| GGAGTTGAAGAATGAAGTGA+AGG | - | chr3.2:53187000-53187019 | MS.gene05638:CDS | 40.0% | |
| GGGTTTCAGATTCTACTTGA+AGG | - | chr3.2:53187397-53187416 | MS.gene05638:intron | 40.0% | |
| GTAGTGGTGAAAAGAAACCT+GGG | - | chr3.2:53187089-53187108 | MS.gene05638:CDS | 40.0% | |
| GTTAGTCCTGGATTTAAGCT+TGG | - | chr3.2:53188410-53188429 | MS.gene05638:CDS | 40.0% | |
| TCCACAGTATATGGATAGTG+TGG | - | chr3.2:53188337-53188356 | MS.gene05638:CDS | 40.0% | |
| TCTGGCTATCAAATATACCC+TGG | + | chr3.2:53188456-53188475 | None:intergenic | 40.0% | |
| TCTTTGGATGAACAATGGCA+AGG | + | chr3.2:53188133-53188152 | None:intergenic | 40.0% | |
| TGAGTTCCATCCACAGTATA+TGG | - | chr3.2:53188328-53188347 | MS.gene05638:CDS | 40.0% | |
| TGCCATTGTTCATCCAAAGA+TGG | - | chr3.2:53188133-53188152 | MS.gene05638:CDS | 40.0% | |
| TTTCTCCGATCTGATCCAAA+GGG | - | chr3.2:53186493-53186512 | MS.gene05638:CDS | 40.0% | |
| ! | TTTGGTAACTTAGAGCAGCA+CGG | - | chr3.2:53188167-53188186 | MS.gene05638:CDS | 40.0% |
| !! | TGTTGATGATGACGAAGATG+AGG | - | chr3.2:53186634-53186653 | MS.gene05638:CDS | 40.0% |
| AAAATCCCAAGAAGCTCAGC+AGG | + | chr3.2:53188071-53188090 | None:intergenic | 45.0% | |
| AGCATGGTGAGATGAGACAA+TGG | + | chr3.2:53187895-53187914 | None:intergenic | 45.0% | |
| ATCTTCCTCACTGGAACAAG+TGG | + | chr3.2:53186542-53186561 | None:intergenic | 45.0% | |
| CCATTCCCAAGCTTAAATCC+AGG | + | chr3.2:53188419-53188438 | None:intergenic | 45.0% | |
| CCTGGATTTAAGCTTGGGAA+TGG | - | chr3.2:53188416-53188435 | MS.gene05638:CDS | 45.0% | |
| CGACTTGCCTCAAATTGACT+TGG | + | chr3.2:53188302-53188321 | None:intergenic | 45.0% | |
| CTGTGTTGAGAGAGAGGTTT+CGG | - | chr3.2:53186885-53186904 | MS.gene05638:CDS | 45.0% | |
| GAAACTGATCAGGATTGAGG+AGG | + | chr3.2:53188004-53188023 | None:intergenic | 45.0% | |
| GGATGAAAAAGGTGACCCTT+TGG | - | chr3.2:53186655-53186674 | MS.gene05638:CDS | 45.0% | |
| TCTTCCTCACTGGAACAAGT+GGG | + | chr3.2:53186541-53186560 | None:intergenic | 45.0% | |
| TGAAAAAGGTGACCCTTTGG+AGG | - | chr3.2:53186658-53186677 | MS.gene05638:CDS | 45.0% | |
| ! | AGTCAATTTGAGGCAAGTCG+TGG | - | chr3.2:53188302-53188321 | MS.gene05638:CDS | 45.0% |
| ! | AGTGTGGTGAAATTTTCCGG+TGG | - | chr3.2:53188353-53188372 | MS.gene05638:CDS | 45.0% |
| ! | GGTAGTGGTGAAAAGAAACC+TGG | - | chr3.2:53187088-53187107 | MS.gene05638:CDS | 45.0% |
| ! | GTGTGGTGAAATTTTCCGGT+GGG | - | chr3.2:53188354-53188373 | MS.gene05638:CDS | 45.0% |
| !! | CCTCAAATTGACTTGGTGGA+GGG | + | chr3.2:53188295-53188314 | None:intergenic | 45.0% |
| !! | CTTGCCTCAAATTGACTTGG+TGG | + | chr3.2:53188299-53188318 | None:intergenic | 45.0% |
| !! | TAGGGTTGGCCAAAACTGTA+TGG | - | chr3.2:53188240-53188259 | MS.gene05638:CDS | 45.0% |
| AAGAAGCTCAGCAGGATCCA+TGG | + | chr3.2:53188063-53188082 | None:intergenic | 50.0% | |
| AGAGAGAGGTTTCGGAGGAA+TGG | - | chr3.2:53186893-53186912 | MS.gene05638:CDS | 50.0% | |
| AGTTGGCTGTGTTGAGAGAG+AGG | - | chr3.2:53186879-53186898 | MS.gene05638:CDS | 50.0% | |
| ATGGATCCTGCTGAGCTTCT+TGG | - | chr3.2:53188062-53188081 | MS.gene05638:CDS | 50.0% | |
| CAATCACGGCGAAACTGATC+AGG | + | chr3.2:53188014-53188033 | None:intergenic | 50.0% | |
| CCCTCCACCAAGTCAATTTG+AGG | - | chr3.2:53188292-53188311 | MS.gene05638:CDS | 50.0% | |
| CTCATCTTCTCTGCATCCCA+CGG | + | chr3.2:53186824-53186843 | None:intergenic | 50.0% | |
| CTCTTAGATTGAGACCTCCC+AGG | + | chr3.2:53187109-53187128 | None:intergenic | 50.0% | |
| GGCGAAACTGATCAGGATTG+AGG | + | chr3.2:53188007-53188026 | None:intergenic | 50.0% | |
| GGTGACCCTTTGGATCAGAT+CGG | + | chr3.2:53186501-53186520 | None:intergenic | 50.0% | |
| GTAGGGTTTCCAGTTAGTCC+TGG | - | chr3.2:53188398-53188417 | MS.gene05638:CDS | 50.0% | |
| GTGGGATGCAGAGAAGATGA+GGG | - | chr3.2:53186823-53186842 | MS.gene05638:CDS | 50.0% | |
| GTGGTGAAAAGAAACCTGGG+AGG | - | chr3.2:53187092-53187111 | MS.gene05638:CDS | 50.0% | |
| TCAACCCACTTGTTCCAGTG+AGG | - | chr3.2:53186534-53186553 | MS.gene05638:CDS | 50.0% | |
| TCCTCCACCACTGCTTCATA+CGG | + | chr3.2:53186983-53187002 | None:intergenic | 50.0% | |
| TGGATCCTGCTGAGCTTCTT+GGG | - | chr3.2:53188063-53188082 | MS.gene05638:CDS | 50.0% | |
| TGTAAAACTCACTCCTGGGG+TGG | + | chr3.2:53188211-53188230 | None:intergenic | 50.0% | |
| TGTTACGGAGCTGAGGAAGT+TGG | - | chr3.2:53186862-53186881 | MS.gene05638:CDS | 50.0% | |
| TGTTGAGAGAGAGGTTTCGG+AGG | - | chr3.2:53186888-53186907 | MS.gene05638:CDS | 50.0% | |
| ! | ACAAGAAGCGCATTCACCGT+GGG | - | chr3.2:53186805-53186824 | MS.gene05638:CDS | 50.0% |
| ! | TACAAGAAGCGCATTCACCG+TGG | - | chr3.2:53186804-53186823 | MS.gene05638:CDS | 50.0% |
| ! | TGGGTTGAGGAGACATGAAG+CGG | + | chr3.2:53186522-53186541 | None:intergenic | 50.0% |
| ! | TGGTGAAATTTTCCGGTGGG+CGG | - | chr3.2:53188357-53188376 | MS.gene05638:CDS | 50.0% |
| !! | AAGAGGTTTTGGTGTGGCGT+CGG | - | chr3.2:53186940-53186959 | MS.gene05638:CDS | 50.0% |
| !! | AATGGTGGTGGTAGGAAAGG+TGG | - | chr3.2:53186911-53186930 | MS.gene05638:CDS | 50.0% |
| !! | AGGAATGGTGGTGGTAGGAA+AGG | - | chr3.2:53186908-53186927 | MS.gene05638:CDS | 50.0% |
| !! | GCCTCAAATTGACTTGGTGG+AGG | + | chr3.2:53188296-53188315 | None:intergenic | 50.0% |
| !! | TCACTGGAACAAGTGGGTTG+AGG | + | chr3.2:53186535-53186554 | None:intergenic | 50.0% |
| !! | TCGGAGAAGAGGTTTTGGTG+TGG | - | chr3.2:53186934-53186953 | MS.gene05638:CDS | 50.0% |
| AACCCTACAACCTGACCAGC+TGG | + | chr3.2:53188386-53188405 | None:intergenic | 55.0% | |
| AGGAAAGGTGGTCGGAGAAG+AGG | - | chr3.2:53186923-53186942 | MS.gene05638:CDS | 55.0% | |
| AGGTTTCGGAGGAATGGTGG+TGG | - | chr3.2:53186899-53186918 | MS.gene05638:CDS | 55.0% | |
| CAGGATTGAGGAGGGATGAG+AGG | + | chr3.2:53187995-53188014 | None:intergenic | 55.0% | |
| CGTGGGATGCAGAGAAGATG+AGG | - | chr3.2:53186822-53186841 | MS.gene05638:CDS | 55.0% | |
| GAAGATGAGGGTTGCTGACG+TGG | - | chr3.2:53186835-53186854 | MS.gene05638:CDS | 55.0% | |
| GACATGAAGCGGTGACCCTT+TGG | + | chr3.2:53186511-53186530 | None:intergenic | 55.0% | |
| GAGAGGTTTCGGAGGAATGG+TGG | - | chr3.2:53186896-53186915 | MS.gene05638:CDS | 55.0% | |
| GTGGTGGTAGGAAAGGTGGT+CGG | - | chr3.2:53186915-53186934 | MS.gene05638:CDS | 55.0% | |
| TGCTGACGTGGCGGTTGTTA+CGG | - | chr3.2:53186847-53186866 | MS.gene05638:CDS | 55.0% | |
| ! | GGTGAAATTTTCCGGTGGGC+GGG | - | chr3.2:53188358-53188377 | MS.gene05638:CDS | 55.0% |
| ! | GGTGGTCGGAGAAGAGGTTT+TGG | - | chr3.2:53186929-53186948 | MS.gene05638:CDS | 55.0% |
| ! | TGCCAGCTGGTCAGGTTGTA+GGG | - | chr3.2:53188381-53188400 | MS.gene05638:CDS | 55.0% |
| !! | TTCGGAGGAATGGTGGTGGT+AGG | - | chr3.2:53186903-53186922 | MS.gene05638:CDS | 55.0% |
| !!! | TTTTGGTGTGGCGTCGGTGA+GGG | - | chr3.2:53186946-53186965 | MS.gene05638:CDS | 55.0% |
| CAGCACGGTCAAGTCCAAGC+AGG | - | chr3.2:53188182-53188201 | MS.gene05638:CDS | 60.0% | |
| GATGAGGGTTGCTGACGTGG+CGG | - | chr3.2:53186838-53186857 | MS.gene05638:CDS | 60.0% | |
| GCCGTATGAAGCAGTGGTGG+AGG | - | chr3.2:53186979-53186998 | MS.gene05638:CDS | 60.0% | |
| TCCAAGCAGGAAACCACCCC+AGG | - | chr3.2:53188195-53188214 | MS.gene05638:CDS | 60.0% | |
| TCCTGGGGTGGTTTCCTGCT+TGG | + | chr3.2:53188199-53188218 | None:intergenic | 60.0% | |
| TGGCGGTTGTTACGGAGCTG+AGG | - | chr3.2:53186855-53186874 | MS.gene05638:CDS | 60.0% | |
| TGTGGCGCCGTATGAAGCAG+TGG | - | chr3.2:53186973-53186992 | MS.gene05638:CDS | 60.0% | |
| ! | GTGCCAGCTGGTCAGGTTGT+AGG | - | chr3.2:53188380-53188399 | MS.gene05638:CDS | 60.0% |
| !!! | GTTTTGGTGTGGCGTCGGTG+AGG | - | chr3.2:53186945-53186964 | MS.gene05638:CDS | 60.0% |
| GGCGCCGTATGAAGCAGTGG+TGG | - | chr3.2:53186976-53186995 | MS.gene05638:CDS | 65.0% | |
| !! | GGCGTCGGTGAGGGAGGTTG+TGG | - | chr3.2:53186955-53186974 | MS.gene05638:CDS | 70.0% |
| !! | TGGTGTGGCGTCGGTGAGGG+AGG | - | chr3.2:53186949-53186968 | MS.gene05638:CDS | 70.0% |
| ACCAGCTGGCACCCGCCCAC+CGG | + | chr3.2:53188372-53188391 | None:intergenic | 75.0% | |
| TGGGCGGGTGCCAGCTGGTC+AGG | - | chr3.2:53188373-53188392 | MS.gene05638:CDS | 75.0% | |
| ! | TCCGGTGGGCGGGTGCCAGC+TGG | - | chr3.2:53188368-53188387 | MS.gene05638:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 53186473 | 53188481 | 53186473 | ID=MS.gene05638 |
| chr3.2 | mRNA | 53186473 | 53188481 | 53186473 | ID=MS.gene05638.t1;Parent=MS.gene05638 |
| chr3.2 | exon | 53187809 | 53188481 | 53187809 | ID=MS.gene05638.t1.exon1;Parent=MS.gene05638.t1 |
| chr3.2 | CDS | 53187809 | 53188481 | 53187809 | ID=cds.MS.gene05638.t1;Parent=MS.gene05638.t1 |
| chr3.2 | exon | 53186473 | 53187251 | 53186473 | ID=MS.gene05638.t1.exon2;Parent=MS.gene05638.t1 |
| chr3.2 | CDS | 53186473 | 53187251 | 53186473 | ID=cds.MS.gene05638.t1;Parent=MS.gene05638.t1 |
| Gene Sequence |
| Protein sequence |
