Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38005.t1 | GAU25724.1 | 72.2 | 54 | 15 | 0 | 15 | 68 | 65 | 118 | 1.70E-11 | 79 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38005.t1 | A0A2Z6LZX5 | 72.2 | 54 | 15 | 0 | 15 | 68 | 65 | 118 | 1.2e-11 | 79.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057102 | MS.gene38005 | 0.827715 | 1.34E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38005.t1 | MTR_5g069640 | 68.519 | 54 | 17 | 0 | 15 | 68 | 65 | 118 | 3.46e-21 | 83.2 |
| MS.gene38005.t1 | MTR_8g093450 | 92.308 | 39 | 3 | 0 | 83 | 121 | 57 | 95 | 4.71e-20 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38005.t1 | AT2G29590 | 59.259 | 54 | 22 | 0 | 15 | 68 | 62 | 115 | 4.25e-16 | 70.1 |
Find 28 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTCTTTGTTAAAC+TGG | 0.287597 | 5.1:+77061112 | None:intergenic |
| ATCCAAGCATGCAAGGTTCT+AGG | 0.351913 | 5.1:-77063403 | None:intergenic |
| AAGAAAAGATGAAAAGTGTA+TGG | 0.395163 | 5.1:-77061077 | MS.gene38005:CDS |
| GTACTGTACCTGATACAATA+TGG | 0.402588 | 5.1:+77061245 | None:intergenic |
| GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 5.1:-77061162 | MS.gene38005:CDS |
| GAGGAGAACCATATTGTATC+AGG | 0.416982 | 5.1:-77061253 | MS.gene38005:intron |
| CATATCAACATAAACATTCA+TGG | 0.435825 | 5.1:+77061442 | None:intergenic |
| GTTTAACAAAGAGGAGGGAT+TGG | 0.488431 | 5.1:-77061109 | MS.gene38005:CDS |
| AACACTGGAAAGTTGGCTAA+TGG | 0.488900 | 5.1:-77061524 | MS.gene38005:CDS |
| CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 5.1:+77061260 | None:intergenic |
| TCCAAGCATGCAAGGTTCTA+GGG | 0.493269 | 5.1:-77063402 | None:intergenic |
| GGGGCTGTAATCCATGGAAA+TGG | 0.501769 | 5.1:-77061470 | MS.gene38005:CDS |
| ACAGGACAACACTGGAAAGT+TGG | 0.504393 | 5.1:-77061531 | MS.gene38005:intron |
| TCATGGGGAGACCATTTCCA+TGG | 0.527491 | 5.1:+77061459 | None:intergenic |
| GAATATCTTGAGGAATATGT+TGG | 0.532265 | 5.1:-77061285 | MS.gene38005:CDS |
| AGAAAAGATGAAAAGTGTAT+GGG | 0.540681 | 5.1:-77061076 | MS.gene38005:CDS |
| GTTGGAGGGGCTGTAATCCA+TGG | 0.544476 | 5.1:-77061476 | MS.gene38005:CDS |
| ATATCAACATAAACATTCAT+GGG | 0.545871 | 5.1:+77061443 | None:intergenic |
| TACCAGTTTAACAAAGAGGA+GGG | 0.568079 | 5.1:-77061114 | MS.gene38005:CDS |
| GTATTACCAGTTTAACAAAG+AGG | 0.598288 | 5.1:-77061118 | MS.gene38005:CDS |
| CCTCTCTTACAGGACAACAC+TGG | 0.607683 | 5.1:-77061539 | MS.gene38005:intron |
| TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 5.1:-77061145 | MS.gene38005:CDS |
| TCTCGCAATCCAAGCATGCA+AGG | 0.609643 | 5.1:-77063410 | None:intergenic |
| TTACCAGTTTAACAAAGAGG+AGG | 0.617647 | 5.1:-77061115 | MS.gene38005:CDS |
| TCACGTGCAGGAATATCTTG+AGG | 0.635000 | 5.1:-77061295 | MS.gene38005:intron |
| AAGATGAAAAGTGTATGGGA+AGG | 0.640402 | 5.1:-77061072 | MS.gene38005:CDS |
| AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 5.1:-77061272 | MS.gene38005:CDS |
| TATCAACATAAACATTCATG+GGG | 0.688765 | 5.1:+77061444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTACTTGAAATAAAA+AGG | - | chr5.1:77062548-77062567 | MS.gene38005:intron | 10.0% |
| !! | TATTTATACAAATATCAAAT+AGG | + | chr5.1:77062728-77062747 | None:intergenic | 10.0% |
| !!! | AATTATGGTTTTATATTATT+TGG | - | chr5.1:77061812-77061831 | MS.gene38005:intron | 10.0% |
| !! | AATAATCCTTTATTAGTTAA+GGG | - | chr5.1:77062793-77062812 | MS.gene38005:intron | 15.0% |
| !! | AGATTAAATTTAAGAAAAAC+TGG | - | chr5.1:77062850-77062869 | MS.gene38005:intron | 15.0% |
| !! | TAATAATCCTTTATTAGTTA+AGG | - | chr5.1:77062792-77062811 | MS.gene38005:intron | 15.0% |
| !! | TATATGAATATGTTGAATTA+TGG | - | chr5.1:77061797-77061816 | MS.gene38005:intron | 15.0% |
| !! | TTATTCTATATAGAATTGAA+TGG | - | chr5.1:77062879-77062898 | MS.gene38005:intron | 15.0% |
| !! | TTTAAACTTGAAATTAACAA+TGG | + | chr5.1:77061206-77061225 | None:intergenic | 15.0% |
| !!! | AAAAAAAAGAATTTTGAGAA+CGG | + | chr5.1:77061867-77061886 | None:intergenic | 15.0% |
| !!! | ATAAAGGATTATTATTTCTA+TGG | + | chr5.1:77062786-77062805 | None:intergenic | 15.0% |
| !!! | TTGTAGTGTTTTAATTTTAA+GGG | - | chr5.1:77061466-77061485 | MS.gene38005:CDS | 15.0% |
| !! | AATAGATTCATAATCACAAT+TGG | - | chr5.1:77061625-77061644 | MS.gene38005:intron | 20.0% |
| !! | ATAGGAAATAAAAGATCAAT+AGG | + | chr5.1:77062710-77062729 | None:intergenic | 20.0% |
| !! | ATATAGAATTGAATGGTAAA+AGG | - | chr5.1:77062886-77062905 | MS.gene38005:intron | 20.0% |
| !! | ATATCAACATAAACATTCAT+GGG | + | chr5.1:77063020-77063039 | None:intergenic | 20.0% |
| !! | CAATGCATAAAAAAGAAAAT+GGG | + | chr5.1:77061133-77061152 | None:intergenic | 20.0% |
| !! | TCAATGCATAAAAAAGAAAA+TGG | + | chr5.1:77061134-77061153 | None:intergenic | 20.0% |
| !! | TCATGTTAACATAAAAGATT+AGG | - | chr5.1:77063083-77063102 | MS.gene38005:intron | 20.0% |
| !! | TGTGATTATGAATCTATTAT+AGG | + | chr5.1:77061623-77061642 | None:intergenic | 20.0% |
| !!! | AAAAAAAGAATTTTGAGAAC+GGG | + | chr5.1:77061866-77061885 | None:intergenic | 20.0% |
| !!! | CTTGTAGTGTTTTAATTTTA+AGG | - | chr5.1:77061465-77061484 | MS.gene38005:CDS | 20.0% |
| !!! | TGGTTTTATATTATTTGGAT+AGG | - | chr5.1:77061817-77061836 | MS.gene38005:intron | 20.0% |
| !!! | TTGAGTTTTAAAATTTTCTG+AGG | - | chr5.1:77061730-77061749 | MS.gene38005:intron | 20.0% |
| !!! | TTTTAAAACTCAACATATGA+TGG | + | chr5.1:77061723-77061742 | None:intergenic | 20.0% |
| ! | AAGTAAAGACTAAAGAAAAC+AGG | + | chr5.1:77061967-77061986 | None:intergenic | 25.0% |
| ! | AGTTATATAGTCATGTCATT+AGG | - | chr5.1:77061566-77061585 | MS.gene38005:intron | 25.0% |
| ! | ATGTAAAGCTCAAACTATAA+TGG | + | chr5.1:77061670-77061689 | None:intergenic | 25.0% |
| ! | ATTCATAATCACAATTGGTT+TGG | - | chr5.1:77061630-77061649 | MS.gene38005:intron | 25.0% |
| ! | CATATCAACATAAACATTCA+TGG | + | chr5.1:77063021-77063040 | None:intergenic | 25.0% |
| ! | TATCAACATAAACATTCATG+GGG | + | chr5.1:77063019-77063038 | None:intergenic | 25.0% |
| ! | TATGAATCTATTATAGGCAA+AGG | + | chr5.1:77061617-77061636 | None:intergenic | 25.0% |
| !! | AAATTTTATATATCACGTGC+AGG | - | chr5.1:77063153-77063172 | MS.gene38005:intron | 25.0% |
| !! | AAGAAAAGATGAAAAGTGTA+TGG | - | chr5.1:77063383-77063402 | MS.gene38005:CDS | 25.0% |
| !! | AGAAAAGATGAAAAGTGTAT+GGG | - | chr5.1:77063384-77063403 | MS.gene38005:CDS | 25.0% |
| !! | AGTTATGTCTTTTAGCAATT+AGG | - | chr5.1:77061497-77061516 | MS.gene38005:CDS | 25.0% |
| !! | GATTTTTGTTGAATGTTGTT+TGG | - | chr5.1:77062581-77062600 | MS.gene38005:intron | 25.0% |
| !! | TTTTTATGAGTGAGATTTCT+AGG | - | chr5.1:77062288-77062307 | MS.gene38005:intron | 25.0% |
| !!! | AAAAAAGAATTTTGAGAACG+GGG | + | chr5.1:77061865-77061884 | None:intergenic | 25.0% |
| !!! | AAATTTTCTGAGGATGATTT+AGG | - | chr5.1:77061740-77061759 | MS.gene38005:intron | 25.0% |
| !!! | AATTTTCTGAGGATGATTTA+GGG | - | chr5.1:77061741-77061760 | MS.gene38005:intron | 25.0% |
| !!! | ACACAACTATTGATTTTTCT+AGG | - | chr5.1:77062661-77062680 | MS.gene38005:intron | 25.0% |
| !!! | TCGTAGTTATTTTATTGAGA+AGG | + | chr5.1:77062487-77062506 | None:intergenic | 25.0% |
| !!! | TCTACTTTGTTTCTAAACTT+TGG | - | chr5.1:77062119-77062138 | MS.gene38005:intron | 25.0% |
| AAATGTAAGCGTATTGAGTT+GGG | - | chr5.1:77061326-77061345 | MS.gene38005:intron | 30.0% | |
| AATATCTGTGCTGAAGAAAA+AGG | + | chr5.1:77061427-77061446 | None:intergenic | 30.0% | |
| AATTATATGTCGCTGCTATT+TGG | - | chr5.1:77062211-77062230 | MS.gene38005:intron | 30.0% | |
| AGCACAGATATTTAGTAGTT+GGG | - | chr5.1:77061435-77061454 | MS.gene38005:CDS | 30.0% | |
| ATCTTTCTTATCTTTCACCT+TGG | + | chr5.1:77063296-77063315 | None:intergenic | 30.0% | |
| CTGAAAAGAAGCTTCAATTT+AGG | - | chr5.1:77063241-77063260 | MS.gene38005:intron | 30.0% | |
| GAATATCTTGAGGAATATGT+TGG | - | chr5.1:77063175-77063194 | MS.gene38005:intron | 30.0% | |
| GCTTAGAGTAATGTAAAACA+TGG | - | chr5.1:77062002-77062021 | MS.gene38005:intron | 30.0% | |
| GTATTACCAGTTTAACAAAG+AGG | - | chr5.1:77063342-77063361 | MS.gene38005:intron | 30.0% | |
| GTGAAAGATAAGAAAGATCT+TGG | - | chr5.1:77063298-77063317 | MS.gene38005:intron | 30.0% | |
| TCTTTCTTATCTTTCACCTT+GGG | + | chr5.1:77063295-77063314 | None:intergenic | 30.0% | |
| TGTGTTAATGTGCTATCTTT+AGG | - | chr5.1:77063115-77063134 | MS.gene38005:intron | 30.0% | |
| TTTCACTTTCAATGTACTCT+TGG | - | chr5.1:77062406-77062425 | MS.gene38005:intron | 30.0% | |
| ! | ATTGAGAAGGTTTTCCTTTA+CGG | + | chr5.1:77062474-77062493 | None:intergenic | 30.0% |
| ! | CGTTCATAACACGTTTTATA+GGG | + | chr5.1:77061910-77061929 | None:intergenic | 30.0% |
| ! | CTATAATGGAGTTCATAGAA+TGG | + | chr5.1:77061656-77061675 | None:intergenic | 30.0% |
| ! | TATTTGGTAGTATACAACTG+TGG | - | chr5.1:77062227-77062246 | MS.gene38005:intron | 30.0% |
| ! | TCGTTCATAACACGTTTTAT+AGG | + | chr5.1:77061911-77061930 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTCTGTGTAGTGT+TGG | - | chr5.1:77061878-77061897 | MS.gene38005:intron | 30.0% |
| AAACAGGAGCAGAAAAATAC+AGG | + | chr5.1:77061379-77061398 | None:intergenic | 35.0% | |
| AACAGGAGCAGAAAAATACA+GGG | + | chr5.1:77061378-77061397 | None:intergenic | 35.0% | |
| ACTCAATACGCTTACATTTG+TGG | + | chr5.1:77061325-77061344 | None:intergenic | 35.0% | |
| AGAGGTCATACAATCTTACT+TGG | - | chr5.1:77062820-77062839 | MS.gene38005:intron | 35.0% | |
| ATAGTCATGTCATTAGGTCA+TGG | - | chr5.1:77061572-77061591 | MS.gene38005:intron | 35.0% | |
| ATCAAAGTAGCGAACAAAAC+AGG | + | chr5.1:77061395-77061414 | None:intergenic | 35.0% | |
| CAAAGTAGACTAAAGAGAAC+AGG | + | chr5.1:77062108-77062127 | None:intergenic | 35.0% | |
| CAAATGTAAGCGTATTGAGT+TGG | - | chr5.1:77061325-77061344 | MS.gene38005:intron | 35.0% | |
| CAGCACAGATATTTAGTAGT+TGG | - | chr5.1:77061434-77061453 | MS.gene38005:CDS | 35.0% | |
| CATTGGGGAAATATGAAACA+GGG | - | chr5.1:77061275-77061294 | MS.gene38005:CDS | 35.0% | |
| CTCACACCCTTAACTAATAA+AGG | + | chr5.1:77062802-77062821 | None:intergenic | 35.0% | |
| GTACTGTACCTGATACAATA+TGG | + | chr5.1:77063218-77063237 | None:intergenic | 35.0% | |
| GTGTAGAATAATGTGAAGCA+TGG | - | chr5.1:77062141-77062160 | MS.gene38005:intron | 35.0% | |
| TACCAGTTTAACAAAGAGGA+GGG | - | chr5.1:77063346-77063365 | MS.gene38005:intron | 35.0% | |
| TAGTCATGTCATTAGGTCAT+GGG | - | chr5.1:77061573-77061592 | MS.gene38005:intron | 35.0% | |
| TATAACTCTAACCATTGCAC+TGG | + | chr5.1:77061553-77061572 | None:intergenic | 35.0% | |
| TCAAAATTGTGTTTCCTTGC+AGG | - | chr5.1:77062028-77062047 | MS.gene38005:intron | 35.0% | |
| TCAGAAGATTATGCTGTGAT+GGG | - | chr5.1:77061245-77061264 | MS.gene38005:intron | 35.0% | |
| TCATTGGGGAAATATGAAAC+AGG | - | chr5.1:77061274-77061293 | MS.gene38005:CDS | 35.0% | |
| TCTTGGAATCATGAAAGTCA+AGG | - | chr5.1:77063315-77063334 | MS.gene38005:intron | 35.0% | |
| TCTTGGATTTGTGTATCTAG+AGG | - | chr5.1:77062423-77062442 | MS.gene38005:intron | 35.0% | |
| TTACCAGTTTAACAAAGAGG+AGG | - | chr5.1:77063345-77063364 | MS.gene38005:intron | 35.0% | |
| TTCAGAAGATTATGCTGTGA+TGG | - | chr5.1:77061244-77061263 | MS.gene38005:intron | 35.0% | |
| ! | AAGATGAAAAGTGTATGGGA+AGG | - | chr5.1:77063388-77063407 | MS.gene38005:CDS | 35.0% |
| ! | ATCAGCTACGACAAGATTTT+CGG | - | chr5.1:77061094-77061113 | MS.gene38005:CDS | 35.0% |
| ! | ATTTGATAATACTGCCTGCA+AGG | + | chr5.1:77062045-77062064 | None:intergenic | 35.0% |
| ! | GTTTGGATTGTTTGCGATTT+TGG | - | chr5.1:77062598-77062617 | MS.gene38005:intron | 35.0% |
| ! | TAACACGTTTTATAGGGAAG+TGG | + | chr5.1:77061904-77061923 | None:intergenic | 35.0% |
| ! | TCAACTTTTGTGAGTGAAGT+TGG | - | chr5.1:77062966-77062985 | MS.gene38005:intron | 35.0% |
| ! | TTATTAGTTAAGGGTGTGAG+AGG | - | chr5.1:77062802-77062821 | MS.gene38005:intron | 35.0% |
| AAAAACAACCCATCAACTGG+AGG | + | chr5.1:77062389-77062408 | None:intergenic | 40.0% | |
| AACACTGGAAAGTTGGCTAA+TGG | - | chr5.1:77062936-77062955 | MS.gene38005:intron | 40.0% | |
| AATATGTTGGAACCGTGAAG+AGG | - | chr5.1:77063188-77063207 | MS.gene38005:intron | 40.0% | |
| ACGACAAAACCCAATTTCTC+TGG | + | chr5.1:77062518-77062537 | None:intergenic | 40.0% | |
| ATCCCTCCTCTTTGTTAAAC+TGG | + | chr5.1:77063351-77063370 | None:intergenic | 40.0% | |
| ATGGCATAAGTTCGTGGAAA+AGG | + | chr5.1:77061704-77061723 | None:intergenic | 40.0% | |
| CAATATGGTTCTCCTCTTCA+CGG | + | chr5.1:77063203-77063222 | None:intergenic | 40.0% | |
| CATATGATGGCATAAGTTCG+TGG | + | chr5.1:77061710-77061729 | None:intergenic | 40.0% | |
| CTAGAGGAATACATATCTCG+TGG | - | chr5.1:77062439-77062458 | MS.gene38005:intron | 40.0% | |
| GAGGAGAACCATATTGTATC+AGG | - | chr5.1:77063207-77063226 | MS.gene38005:intron | 40.0% | |
| GTCATGACTTGATATACCCA+AGG | - | chr5.1:77063276-77063295 | MS.gene38005:intron | 40.0% | |
| GTGAAAAACAACCCATCAAC+TGG | + | chr5.1:77062392-77062411 | None:intergenic | 40.0% | |
| GTTTAACAAAGAGGAGGGAT+TGG | - | chr5.1:77063351-77063370 | MS.gene38005:intron | 40.0% | |
| TGAAGCATGGTTGTCAATCA+CGG | - | chr5.1:77062154-77062173 | MS.gene38005:intron | 40.0% | |
| ! | ACTTTTGTGAGTGAAGTTGG+AGG | - | chr5.1:77062969-77062988 | MS.gene38005:intron | 40.0% |
| ! | AGATTATGCTGTGATGGGAT+CGG | - | chr5.1:77061250-77061269 | MS.gene38005:intron | 40.0% |
| ! | CTTTTGTGAGTGAAGTTGGA+GGG | - | chr5.1:77062970-77062989 | MS.gene38005:intron | 40.0% |
| ! | GTTACTTTCACCTCTCTTAC+AGG | - | chr5.1:77062911-77062930 | MS.gene38005:intron | 40.0% |
| ! | TTTTGTGAGTGAAGTTGGAG+GGG | - | chr5.1:77062971-77062990 | MS.gene38005:intron | 40.0% |
| !! | AGAAATTGGGTTTTGTCGTC+GGG | - | chr5.1:77062519-77062538 | MS.gene38005:intron | 40.0% |
| !! | CAATTAGGCTGTTTTCTTCC+AGG | - | chr5.1:77061512-77061531 | MS.gene38005:CDS | 40.0% |
| !! | GAGAAATTGGGTTTTGTCGT+CGG | - | chr5.1:77062518-77062537 | MS.gene38005:intron | 40.0% |
| !!! | TTCGTTGCTTTTTTGCTCTG+TGG | - | chr5.1:77062332-77062351 | MS.gene38005:intron | 40.0% |
| AACCCATCAACTGGAGGAAA+AGG | + | chr5.1:77062383-77062402 | None:intergenic | 45.0% | |
| ACAGGACAACACTGGAAAGT+TGG | - | chr5.1:77062929-77062948 | MS.gene38005:intron | 45.0% | |
| ACGCACGAACCAGAGAAATT+GGG | - | chr5.1:77062506-77062525 | MS.gene38005:intron | 45.0% | |
| CGACTCACAAACTTCATGTC+TGG | + | chr5.1:77061355-77061374 | None:intergenic | 45.0% | |
| TAGGTCATGGGTTTCAGTCA+TGG | - | chr5.1:77061585-77061604 | MS.gene38005:intron | 45.0% | |
| TCACGTGCAGGAATATCTTG+AGG | - | chr5.1:77063165-77063184 | MS.gene38005:intron | 45.0% | |
| ! | AGCCTTTTCCTCCAGTTGAT+GGG | - | chr5.1:77062378-77062397 | MS.gene38005:intron | 45.0% |
| ! | TAGCCTTTTCCTCCAGTTGA+TGG | - | chr5.1:77062377-77062396 | MS.gene38005:intron | 45.0% |
| ! | TGTGATGGGATCGGATCATT+GGG | - | chr5.1:77061259-77061278 | MS.gene38005:CDS | 45.0% |
| !! | AGGCTGTTTTCTTCCAGGAA+GGG | - | chr5.1:77061517-77061536 | MS.gene38005:CDS | 45.0% |
| !! | TAGGCTGTTTTCTTCCAGGA+AGG | - | chr5.1:77061516-77061535 | MS.gene38005:CDS | 45.0% |
| !!! | TTGCTTTTTTGCTCTGTGGC+AGG | - | chr5.1:77062336-77062355 | MS.gene38005:intron | 45.0% |
| CCAGTGTTGTCCTGTAAGAG+AGG | + | chr5.1:77062924-77062943 | None:intergenic | 50.0% | |
| CCTCTCTTACAGGACAACAC+TGG | - | chr5.1:77062921-77062940 | MS.gene38005:intron | 50.0% | |
| CGTGGATTTGCGAACCGTAA+AGG | - | chr5.1:77062457-77062476 | MS.gene38005:intron | 50.0% | |
| GACGCACGAACCAGAGAAAT+TGG | - | chr5.1:77062505-77062524 | MS.gene38005:intron | 50.0% | |
| GGGGCTGTAATCCATGGAAA+TGG | - | chr5.1:77062990-77063009 | MS.gene38005:intron | 50.0% | |
| TCATGGGGAGACCATTTCCA+TGG | + | chr5.1:77063004-77063023 | None:intergenic | 50.0% | |
| ! | CTGTGATGGGATCGGATCAT+TGG | - | chr5.1:77061258-77061277 | MS.gene38005:CDS | 50.0% |
| ! | GTGATGGGATCGGATCATTG+GGG | - | chr5.1:77061260-77061279 | MS.gene38005:CDS | 50.0% |
| !! | GGCTGTTTTCTTCCAGGAAG+GGG | - | chr5.1:77061518-77061537 | MS.gene38005:CDS | 50.0% |
| GTTGGAGGGGCTGTAATCCA+TGG | - | chr5.1:77062984-77063003 | MS.gene38005:intron | 55.0% | |
| TTCTTCCAGGAAGGGGACCT+CGG | - | chr5.1:77061525-77061544 | MS.gene38005:CDS | 55.0% | |
| ! | TAACCATTGCACTGGCACCG+AGG | + | chr5.1:77061545-77061564 | None:intergenic | 55.0% |
| !! | GGACCTCGGTGCCAGTGCAA+TGG | - | chr5.1:77061539-77061558 | MS.gene38005:intron | 65.0% |
| ! | TGGCACCGAGGTCCCCTTCC+TGG | + | chr5.1:77061533-77061552 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77061065 | 77063417 | 77061065 | ID=MS.gene38005 |
| chr5.1 | mRNA | 77061065 | 77063417 | 77061065 | ID=MS.gene38005.t1;Parent=MS.gene38005 |
| chr5.1 | exon | 77063367 | 77063417 | 77063367 | ID=MS.gene38005.t1.exon1;Parent=MS.gene38005.t1 |
| chr5.1 | CDS | 77063367 | 77063417 | 77063367 | ID=cds.MS.gene38005.t1;Parent=MS.gene38005.t1 |
| chr5.1 | exon | 77061409 | 77061549 | 77061409 | ID=MS.gene38005.t1.exon2;Parent=MS.gene38005.t1 |
| chr5.1 | CDS | 77061409 | 77061549 | 77061409 | ID=cds.MS.gene38005.t1;Parent=MS.gene38005.t1 |
| chr5.1 | exon | 77061254 | 77061307 | 77061254 | ID=MS.gene38005.t1.exon3;Parent=MS.gene38005.t1 |
| chr5.1 | CDS | 77061254 | 77061307 | 77061254 | ID=cds.MS.gene38005.t1;Parent=MS.gene38005.t1 |
| chr5.1 | exon | 77061065 | 77061184 | 77061065 | ID=MS.gene38005.t1.exon4;Parent=MS.gene38005.t1 |
| chr5.1 | CDS | 77061065 | 77061184 | 77061065 | ID=cds.MS.gene38005.t1;Parent=MS.gene38005.t1 |
| Gene Sequence |
| Protein sequence |
