AlfalfaGEDB | MS.gene057102

M. sativa cultivar XinJiangDaYe / MS.gene057102

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057102.t1	XP_003617385.1	98.2	490	9	0	2	491	3	492	1.40E-253	885.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057102.t1	G7K3B9	98.2	490	9	0	2	491	3	492	1.0e-253	885.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene057102	0.846971	1.55E-59	-1.69E-46
MS.gene04918	MS.gene057102	0.852531	4.34E-61	-1.69E-46
MS.gene04919	MS.gene057102	0.816251	6.09E-52	-1.69E-46
MS.gene04920	MS.gene057102	0.834728	2.53E-56	-1.69E-46
MS.gene049254	MS.gene057102	0.845441	4.05E-59	-1.69E-46
MS.gene049283	MS.gene057102	0.839229	1.80E-57	-1.69E-46
MS.gene049350	MS.gene057102	0.844105	9.29E-59	-1.69E-46
MS.gene049368	MS.gene057102	0.839535	1.50E-57	-1.69E-46
MS.gene049411	MS.gene057102	0.808365	3.21E-50	-1.69E-46
MS.gene049499	MS.gene057102	0.851461	8.75E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene012136	MS.gene057102	PPI
MS.gene057102	MS.gene44220	PPI
MS.gene057102	MS.gene67475	PPI
MS.gene057102	MS.gene59498	PPI
MS.gene057102	MS.gene64799	PPI
MS.gene057102	MS.gene017610	PPI
MS.gene28870	MS.gene057102	PPI
MS.gene64799	MS.gene057102	PPI
MS.gene67474	MS.gene057102	PPI
MS.gene67475	MS.gene057102	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057102.t1	MTR_5g091000	98.163	490	9	0	2	491	3	492	0.0	992

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057102.t1	AT2G30880	72.946	499	125	6	2	491	7	504	0.0	668
MS.gene057102.t1	AT2G30880	79.733	375	76	0	2	376	7	381	0.0	582

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Find 107 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCTGAGAAGCAGC+AGG	0.553932	5.3:-73151390	MS.gene057102:CDS
AAAATTTGGCTCGAGACCTT+CGG	0.369260	5.3:-73151547	MS.gene057102:CDS
AAAGGATTATTTCCTATGCG+CGG	0.605240	5.3:-73154091	MS.gene057102:CDS
AAATATGTGGCGTACTGAAC+TGG	0.336452	5.3:-73150936	MS.gene057102:CDS
AAATTTGGCTCGAGACCTTC+GGG	0.393652	5.3:-73151546	MS.gene057102:CDS
AACACTAAGAGTTAAGGATG+AGG	0.588499	5.3:-73151576	MS.gene057102:CDS
AACTTCCTCATTTAGATATC+GGG	0.385027	5.3:-73154125	MS.gene057102:intron
AAGAAATGAGCCAACTGTCA+AGG	0.539148	5.3:-73154462	MS.gene057102:CDS
AAGAGCGGAAGAGAAGGTCA+GGG	0.649867	5.3:-73150870	MS.gene057102:CDS
AAGAGTTTGATCCTTGTTCG+TGG	0.588496	5.3:+73149789	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTCCTCATTTAGATATC+GGG	-	chr5.3:73151141-73151160	MS.gene057102:intron	30.0%
AATTCTTGCTAAAACTCGTA+AGG	-	chr5.3:73151801-73151820	MS.gene057102:intron	30.0%
AGATAGAACAAACCAAAATG+AGG	+	chr5.3:73152391-73152410	None:intergenic	30.0%
ATACAAGCAATGTAGTAACA+AGG	+	chr5.3:73153307-73153326	None:intergenic	30.0%
ATAGGAAACACTAAGAGTTA+AGG	-	chr5.3:73153684-73153703	MS.gene057102:intron	30.0%
ATGAAATTAAAAACAAGGCG+AGG	+	chr5.3:73151265-73151284	None:intergenic	30.0%
ATGAATCATATTAGAACCCA+AGG	+	chr5.3:73150931-73150950	None:intergenic	30.0%
ATGCACTGAACAAAAGAAAT+AGG	-	chr5.3:73153276-73153295	MS.gene057102:intron	30.0%
ATTAACAAAGCTTCAAGCAA+GGG	+	chr5.3:73154561-73154580	None:intergenic	30.0%
ATTTGTATAGGGATGTAGAT+CGG	-	chr5.3:73153599-73153618	MS.gene057102:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	73149775	73155513	73149775	ID=MS.gene057102
chr5.3	mRNA	73149775	73155513	73149775	ID=MS.gene057102.t1;Parent=MS.gene057102
chr5.3	exon	73155397	73155513	73155397	ID=MS.gene057102.t1.exon1;Parent=MS.gene057102.t1
chr5.3	CDS	73155397	73155513	73155397	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73154600	73154661	73154600	ID=MS.gene057102.t1.exon2;Parent=MS.gene057102.t1
chr5.3	CDS	73154600	73154661	73154600	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73154407	73154490	73154407	ID=MS.gene057102.t1.exon3;Parent=MS.gene057102.t1
chr5.3	CDS	73154407	73154490	73154407	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73154245	73154276	73154245	ID=MS.gene057102.t1.exon4;Parent=MS.gene057102.t1
chr5.3	CDS	73154245	73154276	73154245	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73154051	73154132	73154051	ID=MS.gene057102.t1.exon5;Parent=MS.gene057102.t1
chr5.3	CDS	73154051	73154132	73154051	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73152907	73153135	73152907	ID=MS.gene057102.t1.exon6;Parent=MS.gene057102.t1
chr5.3	CDS	73152907	73153135	73152907	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73151373	73151600	73151373	ID=MS.gene057102.t1.exon7;Parent=MS.gene057102.t1
chr5.3	CDS	73151373	73151600	73151373	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73150752	73151044	73150752	ID=MS.gene057102.t1.exon8;Parent=MS.gene057102.t1
chr5.3	CDS	73150752	73151044	73150752	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1
chr5.3	exon	73149775	73150123	73149775	ID=MS.gene057102.t1.exon9;Parent=MS.gene057102.t1
chr5.3	CDS	73149775	73150123	73149775	ID=cds.MS.gene057102.t1;Parent=MS.gene057102.t1

Gene Sequence

>MS.gene057102

ATGTCGCAGCGAGCTGTTGAAAACACAGAGAATAGTTTGGAGAAGATCAAGCGTCAGCTAGCTTCTGCTTCTGGTAGAAATCTGTTGCAGGGTCCACTTCTTAAGAGATCCGAGACTGTAATTAACTTTTCCTCTTTTTTTTTTTTATTTTTTATTAATTGATCACTTTGTCGTGTCATGTTTGTTTAATTACTAAGATTGCTCCTTTTCATATTAATCTTCAAATTTCAACTTTTATTGTGTTAATGGAATTATGATTACTTTGTAATTCAAATGTGCTGTGGGTTTATTGTGTAAATAGAATTATGATTACCTTGTAATTCAAATGCGTTGTGGGTTTTGTGATCTCTGAAGCACCGACACTTACGGTGTGTTTGGATTGAGGGTTTAGGAGGGGAAGGGAGGGGAGGGCTCACTTTTATTTTTTAAATTACGAACAATGTAAAATGTTTTTTTAAAATAAATTAAGTGGTTTTGAAGTATTATGTGATCATTTATCATGTTGTTAATTCAATTTTCAAAAAATCATTTTACATTGTTTGTAATTTAAAAAATAAAGGTGAGCCCTCCCCTCCCTTCCCCTCCTAAACCCTCCATCCAAACACACCCTTAGTGTCCGACACATGTCAGCACCGGCACTTTGTGTGCGACACATTGAAGTATGTCATGTTTTCAAATTATTATCGGTGTGGACGTGTTAGCGTCCCTGTTTGTGTCGGTGCTTCATAGTTTGTGATCCTTTGAATATCCAATCTTGTTTTGATGTTCTTAGAAAAAAATGCTATGCTGTTTGAATTTTCCCTCGAATGTTACCTAGCTTATGTGAAAAATTTGTTATTTTTTTGGTGACAGCTGAGGAAATGGAACGAACGTTGGGTGATCTTGGACCCAACAACTGGGAAAATGGAATACAAGTAGGTTTATATATAAATAAGCTTCATATATTATTTTTTTGTGTGAAGGGAAAAGTAGTAACACTTTGGATGCTGATCATCTGTGCTGTTATTTTTCTTTGATTTTTAGGTTAAGAAGAAATGAGCCAACTGTCAAGGGAACAATTCTATTTGACGCAAATAGCACCATTACTGTATCTCCTGTGAATTTCAAGTAAGCATGGTGTTTTTTTTTTAACATAACCCTATTTTACTTGGTGCCTTGGGTTCTAATATGATTCATGAATGTTTACTTTATGAATTTATCGTTTTATACTAATTTGATTTATTTCGGTGAATTACAGTGGGCTACCGAAGTATGATGGATGCTGCATTTGTATCCTTTTTTTGTCATTTTTATATTTTTATAATTTTCGGGTCATACAAATCATATATTGGTAATGTATGTATCAAAAGTAATCTTGTTGCATCTTAACTTCCTCATTTAGATATCGGGACACCACAAAAAAAGGATTATTTCCTATGCGCGGAGACTCCTGGTGCAGCTCGAGCATGGGTGTCAACATTGCAGTATGTTTCATAATCCCCGACTTTCCTCGCCTTGTTTTTAATTTCATATTGGTGTGCAATATATTTTGAAATTAATTGGCACTAACGTTCTTTTGTTCAAAACATGAATTTATAAGATATTTTTAGCGGGTGTAGTTACATACTTGAGCCAAAAACTCCGTTAGGTTCCTAAAAGGAAAAAGAGTAGAAAATAAGATGACTGCTTAGTTGTTTGGTAGGAGAGGAAACATATGGAAAGAAAGTTATAACTTTTTTGTTCTCTTGCTTGATTGTACAAAAATACCTTCCAAAAACTAAAATATAACAAAAAGACAGTTCAAATCAGAGAAAGAAAAAGAAATTATTTGCTTGCTGTTTTCCTCCTTCTGAGAGAGAGATATTTTGTGAGGGCCACAAAGCATTTTTCCTTCCTTGCTCACTGTTACGGGACGCCAAATGACGGAGGAGTTTTTCGAGTTTTGTACTTTCCTTTTTCCGTCCAAATTTTCAGTTGTTTTTTTTCGCTCGAAACTGAGCGTAAAAGTAATGTTACTTATGCGTATAGTTCTCCATTACTTTCACTAAATTCTTGCTAAAACTCGTAAGGAACGTTACAATTTCATGCCCTGTTTAAAATTATGGGATGTTCTTTACTGTAGTATCTTCCTTCAATAATTTTCTAAGGGTTATCAACTAAATGTTTTTTATACTCACGTTAATAGGCTTCTTCTTGGAAAGGGAGACCCGCTGAATACCATAGTTTAGCTTAATCTTCTATGTTCCTCTTATTGTTATTTATTCTATTCTATTATCTTGTGTTCTTGCTTTCCATTAAAATGGATCAATTTGTATGATTACTGCACTGTTTCTGCAATTTTTCTTGTGTAATAGTTTGCAATTATTTCCTTGTCTGATTTATTTTTACTCTCACACCAGTGCCACTCAGTTGGTTCTAAAAGCTCATAAAGAAGCTGTGAATTCCTTAAGTGGGAATGGTTCTACAAAATTAGGAACTGTCGCAACTGTTGTTGCTGCAGCCAACTCAACAGCCTCGGAATGTTCTAAAGAAATTGAAGCGGCAATGCAGATTTCTTTGCGAAATGCTCTTGGAATGATGCCAAATAGGACTACTGATGGTCCTATGGATGATTTAACAATCATGAAGGTACACCCTCATTTTGGTTTGTTCTATCTTTCTTTCTGTTTCAATGCATTCAGCTTTCATGATGGTGATGCAGGGTCGACGATCCTTATATTTTTCCCTTCAGTACCGTGTTTCAATCTTAATCTGCATATTGTAAAATTTTCTCTAAAAGCTTGGCTTTAGTACACCCTTTGTGTTTTTTTTTTTTTCCTTATCTTTGTCTGGTTTGGACTTTGCTGGATTCCTTTTGTTGCTTCTTGATGTGTTGAGTCTGTAAGTAGTTATCAGTTGCCATCTCTCTAGTCTTTACTTTCATCATACCTTATACTGTTCGAAGGAACATTTGTTGAATTAGTTCAATCACTCTTAGTATCCTGGACAAACAATTCAATCGTCTTCATTGACTGGAGGTTTAAGAGAGGCAAGGATAGGTTAATTAATAACAATTAATGAAACCTTAATGAATGAAAAGGGGCCGGCATATACAGTCTCAGGTCTACATGGTAGCAGCTAGGATCTTCACTCTTAACATCAAATTCACCTTCAATAATAATTGAAGTCTTCAGAAAAACACAATAAATGGGATCATAATAAAATTTGAGATAATTTGTTTTTTTAATTAGAAAAAACTGCAAAAGAAAAAGAAAATTAAGGGCTTTTCTGAGATGTTGAAATGTGTAGCTTCTTAAGAACATAGAAGTTACTTTTTAGAGCTTATCCAAGCTTAGCTTTGATTGGATACCTTTTTGCTAGAAAATTTTCCAAAAAGAAACCTAAAAAAATTGAGTGTGTGATTCTATGAATTTAATTGTCATACTTTTTATGCAATGCATCGAATTGAACAGTGGCTGTGGCAAGGTCCACATTATGGCTGAATCCAGTTTGTTGAATCATAATGAGGATTTTTTGTATGTCATGCACTGAACAAAAGAAATAGGTATTTCCTTGTTACTACATTGCTTGTATTTTATAAACGGTTCAATTTTTCCCTTCGGCTTTAGAGTTTGTAGAGGCCCCTTTGTATCGCTGGTTTGTTGGCTCTCTGACCTTCATACACTTTTGGTTTGCGTTCTCTTGTTTCGAGAATAAGGAAGTGAAGGGAAAAAAAAGTGTCACTGGGAATTTCCTTTTTTTCTTAGTATATTGTGGGGCTTGAATCTAGTGGCAAAGGTTTCGAAGAAGAAATGCAAATATGATATATAAATAGAGAAAATGAAATTTTTAATTAGACAAGGAATATTTGTATAGGGATGTAGATCGGTATCTTGGGCCTTTATGGTTCTTTATTGCTTTGGATTCAGTCTGAAAATGCTGTTTTACTCAATAGGAAACACTAAGAGTTAAGGATGAGGAGCTACAAAATTTGGCTCGAGACCTTCGGGCACGTGATTCAACTATAACAGAAATAGCGGATAAATTATCTGAGACTGCCGAAGCCGCCGAGGCAGCAGCATCTGCTGCTTATACTATGGATGAGCAACGGAGAATTGTTTGTGCAGAAATTGAGCGTTTGAGAAAAGATTCTGAGAAGCAGCAGGAGGTGTATGCACAGAAGGTATGCTTTAATTTTTGGCGGATAGAAATTTGAGCAACTCTTGAAAAACTGTTTCGGATGAATGACCCTTGGCCAATGTTGTTAAATAGCGGTTATAGTGGTGCTATAGCGTTTTACCGTAGCGGAATTTGAACAAATCGTTATTGTTCTGCGATATGCTATTTAGTACAAAATGCTATCAAATAGAGGTTATAGCGGTGCTATAGCACTGCTGTGTAGCATAATTTGAATGAACCGTTATTTTCCACAATCGACAACAATGTAGCTATTGCTATGTGTATTATTTGCTATGAAATTTCTTGAATGTTCTATAAATTGTTTGTTGTAGCTAAAGGAGTACGAAGAAAAAATTATGGGCTTAAGCAAAGAAAGAGAGCAATTAACCGACCAGAGAGATGCTGCTATTAAGGAGGCAAATATGTGGCGTACTGAACTGGGAAAAGCTAGAGAGCATGACGTGATCTTAGAAGCAACTGTAGTAAGAGCGGAAGAGAAGGTCAGGGTTGCTGAGGCCAATGCTGAAGCTAGGATAAAGGAAGCTGTACAGAGAGAATCAGTGGCAACAAAAGAGAAGCAGGAACTTCTTGCATATGTTAACATGCTAAAAGCACAACTTCAAAGGTCAGCGTCTGGTTTTTTTATCCCTTGCTTGAAGCTTTGTTAATAACGGTTATCAAAATTGTGAATTGGAATATCGATTTTCGGAATCCCGAATCAAATCTTCTTATGAATCATAAGATCCATTAAGTAAAAACAAGCAACATAGCAAACCTATAAACTAATGTATCATCTACTAATCTGAAAATGATTCAAGATTCAAGTCTTAAATCAAATGATAAAAAAAGTGGTTGGCTATACAAAGTTGACAAAAAACGTGGCAGGCTACACCAAAGGATAGATGGTGATTCATCAGAGTGAATTGGACTCGATCGTAGTGTATCAGGATTTATCATAATGAATCAGGATCGACCACAATGAATCAGGATTCAAGATGAGATTAATGTTCAATATAGATACACACTAAAAATTCATATGGATTAGGTTCAATTTTGTATCGAATCGAGATACACATGTATCATAAGATGGAAGTATTATATATAATACTAGAGAATTAAATGGAAACTTCAGATGGTTTGTTTGTCTTTTATGAATTATGAGTTCGTTTTGGTTGAATTTGTATGCCAGCTATGAAATGTGGAGCATCAGAAAAACAAATTTGACATAGCATATTTTTTTTAACTGTTAACAGGCAACACATTGATGCAACTCAAGTTGTTGAGAAGACAGAGTCATGCTCAGATACAAAGCATGTTGATCCCACTGAAGAAAATGTGGATAAAGCATGCCTAAGTGTTTCTAGAGCAAACCCTATCCCTGCAGAGAATGTAGTTCACATGGCAACAGACCAGGTAAACAACATTCAGCCAGTTGGTGACAACGAATGGAGCGATATTCAGGCTACAGAGGCAAGGATAGCCGATGTAAGGGAAGTCGCAGCACCAGAAACTGATGGAAGCAGCTTGGATATTCCAGTGGTTAGCCAGCCAGGTATCAATCATCACCACGAACAAGGATCAAACTCTTTCCATCAGCCCTGA

Protein sequence

>MS.gene057102.t1

MSQRAVENTENSLEKIKRQLASASGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKLRRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAWVSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRNALGMMPNRTTDGPMDDLTIMKETLRVKDEELQNLARDLRARDSTITEIADKLSETAEAAEAAASAAYTMDEQRRIVCAEIERLRKDSEKQQEVYAQKLKEYEEKIMGLSKEREQLTDQRDAAIKEANMWRTELGKAREHDVILEATVVRAEEKVRVAEANAEARIKEAVQRESVATKEKQELLAYVNMLKAQLQRQHIDATQVVEKTESCSDTKHVDPTEENVDKACLSVSRANPIPAENVVHMATDQVNNIQPVGDNEWSDIQATEARIADVREVAAPETDGSSLDIPVVSQPGINHHHEQGSNSFHQP