Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38028.t1 | XP_003617931.1 | 98 | 255 | 5 | 0 | 26 | 280 | 74 | 328 | 9.30E-144 | 519.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38028.t1 | Q9SR43 | 58.4 | 255 | 106 | 0 | 26 | 280 | 75 | 329 | 2.1e-88 | 327.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38028.t1 | G7KEL5 | 98.0 | 255 | 5 | 0 | 26 | 280 | 74 | 328 | 6.7e-144 | 519.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056988 | MS.gene38028 | -0.801095 | 1.06E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38028.t1 | MTR_5g097080 | 98.039 | 255 | 5 | 0 | 26 | 280 | 74 | 328 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38028.t1 | AT3G09150 | 58.431 | 255 | 106 | 0 | 26 | 280 | 75 | 329 | 1.41e-113 | 331 |
| MS.gene38028.t1 | AT3G09150 | 57.874 | 254 | 107 | 0 | 27 | 280 | 74 | 327 | 2.48e-112 | 328 |
| MS.gene38028.t1 | AT3G09150 | 58.943 | 246 | 101 | 0 | 35 | 280 | 5 | 250 | 2.89e-111 | 322 |
| MS.gene38028.t1 | AT3G09150 | 56.566 | 198 | 86 | 0 | 26 | 223 | 75 | 272 | 1.36e-82 | 250 |
Find 52 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTACCTCAGCATATTTC+AGG | 0.226358 | 5.1:+77417215 | None:intergenic |
| CAACACAACAATGTTTGTTT+TGG | 0.283890 | 5.1:+77417668 | None:intergenic |
| GGGACATCATACTCCGCTTT+TGG | 0.286944 | 5.1:+77417720 | None:intergenic |
| TTAAGAAGCTTTCTCTTTAA+CGG | 0.302166 | 5.1:-77416307 | MS.gene38028:CDS |
| GTATAATTCCTTGAATTCTA+AGG | 0.316064 | 5.1:-77418382 | MS.gene38028:CDS |
| AAATTATGATATTCTGTATT+CGG | 0.324062 | 5.1:-77416808 | MS.gene38028:CDS |
| CATTTCAAGCTGACAAGATT+AGG | 0.335439 | 5.1:-77418332 | MS.gene38028:CDS |
| TTTACCATCCTTAGAATTCA+AGG | 0.336886 | 5.1:+77418374 | None:intergenic |
| AATAAGAAAGGCGGTATTGC+TGG | 0.342144 | 5.1:-77416214 | MS.gene38028:CDS |
| TAATATCATGTAATGGGTTA+AGG | 0.410294 | 5.1:+77417290 | None:intergenic |
| GATTGATAATATCATGTAAT+GGG | 0.410351 | 5.1:+77417284 | None:intergenic |
| ATAAATTCAAACTACCGTTT+CGG | 0.414541 | 5.1:+77416594 | None:intergenic |
| TTTAAAAGCTTAATTCCTCT+TGG | 0.429833 | 5.1:-77417238 | MS.gene38028:CDS |
| ATTACATGATATTATCAATC+AGG | 0.451950 | 5.1:-77417281 | MS.gene38028:CDS |
| TGATTGATAATATCATGTAA+TGG | 0.466631 | 5.1:+77417283 | None:intergenic |
| GGTTCTGCAAAGCAAATGTT+GGG | 0.467670 | 5.1:-77415718 | MS.gene38028:CDS |
| CTCTTCAAGCTTCTGCTACT+CGG | 0.475592 | 5.1:-77418720 | MS.gene38028:CDS |
| TTGAATTCTAAGGATGGTAA+AGG | 0.495204 | 5.1:-77418372 | MS.gene38028:CDS |
| AGGTTCTGCAAAGCAAATGT+TGG | 0.497738 | 5.1:-77415719 | MS.gene38028:CDS |
| TTCTTCAAAACACCTTGTCC+CGG | 0.497752 | 5.1:+77416440 | None:intergenic |
| ATTGACCTTGCAGGTATGGT+TGG | 0.504673 | 5.1:-77416704 | MS.gene38028:intron |
| ATGTTGTGCTTCAAGATTGT+GGG | 0.521421 | 5.1:+77416636 | None:intergenic |
| CCTCATTACCACGGCGAGGA+AGG | 0.525362 | 5.1:-77416244 | MS.gene38028:CDS |
| CCTTCCTCGCCGTGGTAATG+AGG | 0.528698 | 5.1:+77416244 | None:intergenic |
| GATGCAAGCGGAAAATTCCT+TGG | 0.538917 | 5.1:-77416166 | MS.gene38028:intron |
| ATAAGAAAGGCGGTATTGCT+GGG | 0.540548 | 5.1:-77416213 | MS.gene38028:CDS |
| GAAGGAACTCTAAATAAGAA+AGG | 0.549129 | 5.1:-77416226 | MS.gene38028:CDS |
| TTTAACGGAGTCGATGAACT+AGG | 0.550164 | 5.1:-77416292 | MS.gene38028:CDS |
| TATCAATCAGGATGACTACA+AGG | 0.558278 | 5.1:-77417269 | MS.gene38028:CDS |
| CTTGTGAGCTTCCCTCCCCA+TGG | 0.567732 | 5.1:+77416891 | None:intergenic |
| AACTTTGTCCAAATGACTAT+CGG | 0.570194 | 5.1:+77416846 | None:intergenic |
| TCTAACATGGAGAGCCGAAA+CGG | 0.572541 | 5.1:-77416608 | MS.gene38028:intron |
| CATTGAGACAGAAACAATGC+AGG | 0.572862 | 5.1:-77418292 | MS.gene38028:intron |
| TGAAACTAGGATCCGGGACA+AGG | 0.575425 | 5.1:-77416452 | MS.gene38028:intron |
| AATTCCTTGAATTCTAAGGA+TGG | 0.582349 | 5.1:-77418378 | MS.gene38028:CDS |
| TATGTTGTGCTTCAAGATTG+TGG | 0.585564 | 5.1:+77416635 | None:intergenic |
| CTTTACCGTATTTCCAAAAG+CGG | 0.595083 | 5.1:-77417733 | MS.gene38028:CDS |
| TTAGAGTTCCTTCCTCGCCG+TGG | 0.597712 | 5.1:+77416236 | None:intergenic |
| GTTGTTGTGTTTCCGTGTTG+AGG | 0.600476 | 5.1:-77418761 | MS.gene38028:CDS |
| CACAACATAGATATCTAACA+TGG | 0.611644 | 5.1:-77416621 | MS.gene38028:CDS |
| AAAAGTTGGCACAAAATATG+GGG | 0.624106 | 5.1:+77417700 | None:intergenic |
| GATTGGGGACACACTTGCAA+AGG | 0.626585 | 5.1:-77416414 | MS.gene38028:intron |
| ACGGCAGTAAAAGAGACTGA+TGG | 0.629580 | 5.1:-77416670 | MS.gene38028:CDS |
| ATGGTTGGAATTGATAGCCA+CGG | 0.645627 | 5.1:-77416689 | MS.gene38028:CDS |
| GGCATTCAGAGATTACTACA+AGG | 0.646161 | 5.1:-77416787 | MS.gene38028:intron |
| AATCGCCCATGGGATGCAAG+CGG | 0.651732 | 5.1:-77416178 | MS.gene38028:CDS |
| TCAGCATATTTCAGGCCAAG+AGG | 0.659341 | 5.1:+77417223 | None:intergenic |
| ATCATGGAGAAAATTTGCAG+CGG | 0.659408 | 5.1:+77415692 | None:intergenic |
| TCTCAATGATCATACTACGT+AGG | 0.666289 | 5.1:+77418307 | None:intergenic |
| TCTTGGCCTGAAATATGCTG+AGG | 0.671577 | 5.1:-77417221 | MS.gene38028:intron |
| GGAACTCTAAATAAGAAAGG+CGG | 0.694422 | 5.1:-77416223 | MS.gene38028:CDS |
| AGTACATCACATCCTCAACA+CGG | 0.716211 | 5.1:+77418749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAATAATTTACCA+AGG | + | chr5.1:77418310-77418329 | None:intergenic | 10.0% |
| !! | AAACAATTCAAAATTACAAA+TGG | + | chr5.1:77417955-77417974 | None:intergenic | 15.0% |
| !! | AAATTATGATATTCTGTATT+CGG | - | chr5.1:77417648-77417667 | MS.gene38028:intron | 15.0% |
| !! | AACTAAAATAAAGAATAACA+AGG | + | chr5.1:77416875-77416894 | None:intergenic | 15.0% |
| !! | AATAAGATAATGTAGTTTAA+CGG | - | chr5.1:77416358-77416377 | MS.gene38028:intron | 15.0% |
| !! | CAAATTGTTATATATAAGAT+TGG | - | chr5.1:77416207-77416226 | MS.gene38028:CDS | 15.0% |
| !! | TACATTATCTTATTATATGA+AGG | + | chr5.1:77416352-77416371 | None:intergenic | 15.0% |
| !! | TATTTATACATTTATACATG+TGG | + | chr5.1:77416847-77416866 | None:intergenic | 15.0% |
| !! | TTATTACAAAAACTTATCAT+GGG | - | chr5.1:77417023-77417042 | MS.gene38028:intron | 15.0% |
| !! | ACTAAAATAATAGAGAAGAA+TGG | + | chr5.1:77416656-77416675 | None:intergenic | 20.0% |
| !! | ATTACATGATATTATCAATC+AGG | - | chr5.1:77417175-77417194 | MS.gene38028:intron | 20.0% |
| !! | CTTATTACAAAAACTTATCA+TGG | - | chr5.1:77417022-77417041 | MS.gene38028:intron | 20.0% |
| !! | TAAAATATTATGAATTGCCA+TGG | + | chr5.1:77417710-77417729 | None:intergenic | 20.0% |
| !! | TTAATGAATATATTGGACTA+GGG | + | chr5.1:77416447-77416466 | None:intergenic | 20.0% |
| !! | TTTAATGAATATATTGGACT+AGG | + | chr5.1:77416448-77416467 | None:intergenic | 20.0% |
| !!! | AAGTGATAAACTTTTATTAG+AGG | + | chr5.1:77417005-77417024 | None:intergenic | 20.0% |
| !!! | ACAGAATATCATAATTTTGT+GGG | + | chr5.1:77417645-77417664 | None:intergenic | 20.0% |
| !!! | AGTGATAAACTTTTATTAGA+GGG | + | chr5.1:77417004-77417023 | None:intergenic | 20.0% |
| !!! | GATTGATAATATCATGTAAT+GGG | + | chr5.1:77417175-77417194 | None:intergenic | 20.0% |
| !!! | GTTATTCTTTATTTTAGTTG+TGG | - | chr5.1:77416876-77416895 | MS.gene38028:CDS | 20.0% |
| !!! | TACAGAATATCATAATTTTG+TGG | + | chr5.1:77417646-77417665 | None:intergenic | 20.0% |
| !!! | TGATTGATAATATCATGTAA+TGG | + | chr5.1:77417176-77417195 | None:intergenic | 20.0% |
| ! | AAAAAGTTGGCACAAAATAT+GGG | + | chr5.1:77416760-77416779 | None:intergenic | 25.0% |
| ! | AATATAAAAACACACGTGTA+CGG | + | chr5.1:77417477-77417496 | None:intergenic | 25.0% |
| ! | ATAAATTACCAACGACTAAA+AGG | + | chr5.1:77416250-77416269 | None:intergenic | 25.0% |
| ! | ATAAATTCAAACTACCGTTT+CGG | + | chr5.1:77417865-77417884 | None:intergenic | 25.0% |
| ! | ATAATAGAGAAGAATGGAAA+TGG | + | chr5.1:77416650-77416669 | None:intergenic | 25.0% |
| ! | ATCTATACCCACTAATAATA+TGG | + | chr5.1:77416015-77416034 | None:intergenic | 25.0% |
| ! | GTATAATTCCTTGAATTCTA+AGG | - | chr5.1:77416074-77416093 | MS.gene38028:intron | 25.0% |
| ! | TAAATTACCAACGACTAAAA+GGG | + | chr5.1:77416249-77416268 | None:intergenic | 25.0% |
| ! | TCGGTAAAGAATATCAAATT+TGG | + | chr5.1:77416321-77416340 | None:intergenic | 25.0% |
| ! | TTAAGAAGCTTTCTCTTTAA+CGG | - | chr5.1:77418149-77418168 | MS.gene38028:intron | 25.0% |
| ! | TTTAAAAGCTTAATTCCTCT+TGG | - | chr5.1:77417218-77417237 | MS.gene38028:intron | 25.0% |
| ! | TTTAAAGAAATTTGCCAAGA+GGG | + | chr5.1:77418353-77418372 | None:intergenic | 25.0% |
| !! | AAGATTTGTATGTTCAGTTT+TGG | - | chr5.1:77417296-77417315 | MS.gene38028:CDS | 25.0% |
| !! | ATATGTCTGATGTTTTTCTA+TGG | - | chr5.1:77416679-77416698 | MS.gene38028:CDS | 25.0% |
| !! | ATCTCAAACTTTTGTCTAAT+TGG | - | chr5.1:77417883-77417902 | MS.gene38028:intron | 25.0% |
| !! | TCTCAAACTTTTGTCTAATT+GGG | - | chr5.1:77417884-77417903 | MS.gene38028:intron | 25.0% |
| !! | TTTTTGTAGAGAAACAAAAC+TGG | + | chr5.1:77418084-77418103 | None:intergenic | 25.0% |
| !!! | AATATTTTGAAACTAGGATC+CGG | - | chr5.1:77417997-77418016 | MS.gene38028:intron | 25.0% |
| !!! | TAATATCATGTAATGGGTTA+AGG | + | chr5.1:77417169-77417188 | None:intergenic | 25.0% |
| !!! | TTTGATCTTTGGGATATTTT+AGG | - | chr5.1:77418653-77418672 | MS.gene38028:intron | 25.0% |
| !!! | TTTTTACGATTTCTTGTTTG+CGG | - | chr5.1:77417973-77417992 | MS.gene38028:intron | 25.0% |
| AAAAGTTGGCACAAAATATG+GGG | + | chr5.1:77416759-77416778 | None:intergenic | 30.0% | |
| AACTTTGTCCAAATGACTAT+CGG | + | chr5.1:77417613-77417632 | None:intergenic | 30.0% | |
| AATAGAAATGCCAGTTAGAT+TGG | + | chr5.1:77416580-77416599 | None:intergenic | 30.0% | |
| ATAAACACATGCATTTCTCA+TGG | + | chr5.1:77417932-77417951 | None:intergenic | 30.0% | |
| CAAATATCTTCTCTATTCTC+CGG | - | chr5.1:77416517-77416536 | MS.gene38028:intron | 30.0% | |
| CACAACATAGATATCTAACA+TGG | - | chr5.1:77417835-77417854 | MS.gene38028:intron | 30.0% | |
| GAAAAAGTTGGCACAAAATA+TGG | + | chr5.1:77416761-77416780 | None:intergenic | 30.0% | |
| GAAGGAACTCTAAATAAGAA+AGG | - | chr5.1:77418230-77418249 | MS.gene38028:intron | 30.0% | |
| TAATTAGAGTTCTCTCTCAA+AGG | - | chr5.1:77417500-77417519 | MS.gene38028:intron | 30.0% | |
| TATCATGTAGCTCAATGTAT+AGG | + | chr5.1:77418507-77418526 | None:intergenic | 30.0% | |
| TGAAAAACTCATCACTCTTA+TGG | + | chr5.1:77417393-77417412 | None:intergenic | 30.0% | |
| TGGTTAAATTTCTTTGACTC+AGG | - | chr5.1:77418717-77418736 | MS.gene38028:CDS | 30.0% | |
| TTAAAGAAATTTGCCAAGAG+GGG | + | chr5.1:77418352-77418371 | None:intergenic | 30.0% | |
| TTCCTCACCATATTATTAGT+GGG | - | chr5.1:77416005-77416024 | MS.gene38028:intron | 30.0% | |
| TTTACCATCCTTAGAATTCA+AGG | + | chr5.1:77416085-77416104 | None:intergenic | 30.0% | |
| ! | AAACGAGTTTAAAGTTGCAA+AGG | + | chr5.1:77416930-77416949 | None:intergenic | 30.0% |
| ! | AAATTAACCCTTTTAGTCGT+TGG | - | chr5.1:77416239-77416258 | MS.gene38028:CDS | 30.0% |
| ! | AATTCCTTGAATTCTAAGGA+TGG | - | chr5.1:77416078-77416097 | MS.gene38028:intron | 30.0% |
| ! | CAACACAACAATGTTTGTTT+TGG | + | chr5.1:77416791-77416810 | None:intergenic | 30.0% |
| ! | CTTTAAAGAAATTTGCCAAG+AGG | + | chr5.1:77418354-77418373 | None:intergenic | 30.0% |
| ! | GATTATTTTCCTCATTACCA+CGG | - | chr5.1:77418203-77418222 | MS.gene38028:intron | 30.0% |
| ! | TCAAGGAATTATACTTTTCC+TGG | + | chr5.1:77416068-77416087 | None:intergenic | 30.0% |
| ! | TTGAATTCTAAGGATGGTAA+AGG | - | chr5.1:77416084-77416103 | MS.gene38028:intron | 30.0% |
| ! | TTGCAATAATTTTTGCCACT+AGG | - | chr5.1:77415947-77415966 | MS.gene38028:intron | 30.0% |
| !! | CGATCTTTAGAATTTCAATG+CGG | - | chr5.1:77418578-77418597 | MS.gene38028:intron | 30.0% |
| !! | CTAAAAGGGTTAATTTGTTG+AGG | + | chr5.1:77416235-77416254 | None:intergenic | 30.0% |
| !! | TATTTTAGGTCAATGAATGC+TGG | - | chr5.1:77418667-77418686 | MS.gene38028:intron | 30.0% |
| !! | TGTATTTGAACTTTGAAGTC+CGG | + | chr5.1:77416539-77416558 | None:intergenic | 30.0% |
| !!! | ATATTTTGAAACTAGGATCC+GGG | - | chr5.1:77417998-77418017 | MS.gene38028:intron | 30.0% |
| !!! | ATTTTTTCTATCAGATCCTC+AGG | - | chr5.1:77416404-77416423 | MS.gene38028:intron | 30.0% |
| !!! | TGCGGAAATATTTTGAAACT+AGG | - | chr5.1:77417991-77418010 | MS.gene38028:intron | 30.0% |
| !!! | TTTTTTCACCGATAGTCATT+TGG | - | chr5.1:77417602-77417621 | MS.gene38028:intron | 30.0% |
| AACCTTGTATTAATGATGCC+AGG | - | chr5.1:77417141-77417160 | MS.gene38028:intron | 35.0% | |
| ACCTTGTATTAATGATGCCA+GGG | - | chr5.1:77417142-77417161 | MS.gene38028:intron | 35.0% | |
| ATGTTGTGCTTCAAGATTGT+GGG | + | chr5.1:77417823-77417842 | None:intergenic | 35.0% | |
| ATTAGAGGGAAAATGATGCA+TGG | + | chr5.1:77416990-77417009 | None:intergenic | 35.0% | |
| ATTTCCAGTTCCAATCTAAC+TGG | - | chr5.1:77416567-77416586 | MS.gene38028:intron | 35.0% | |
| CATTTCAAGCTGACAAGATT+AGG | - | chr5.1:77416124-77416143 | MS.gene38028:intron | 35.0% | |
| CTTTACCGTATTTCCAAAAG+CGG | - | chr5.1:77416723-77416742 | MS.gene38028:intron | 35.0% | |
| GAATGGAAATGGCACAATTA+AGG | + | chr5.1:77416639-77416658 | None:intergenic | 35.0% | |
| GCAGTATAAAACAGAAAGTG+AGG | + | chr5.1:77418121-77418140 | None:intergenic | 35.0% | |
| GGAACTCTAAATAAGAAAGG+CGG | - | chr5.1:77418233-77418252 | MS.gene38028:intron | 35.0% | |
| GGCAGAAATATATACAGTGA+TGG | + | chr5.1:77416300-77416319 | None:intergenic | 35.0% | |
| GGCATTAATCTTGAGCTAAA+AGG | - | chr5.1:77418603-77418622 | MS.gene38028:intron | 35.0% | |
| GTCAAACTATGAAATCACTC+TGG | + | chr5.1:77416278-77416297 | None:intergenic | 35.0% | |
| GTTAGATTGGAACTGGAAAT+AGG | + | chr5.1:77416567-77416586 | None:intergenic | 35.0% | |
| GTTCCTCACCATATTATTAG+TGG | - | chr5.1:77416004-77416023 | MS.gene38028:intron | 35.0% | |
| TACCCACTAATAATATGGTG+AGG | + | chr5.1:77416010-77416029 | None:intergenic | 35.0% | |
| TATCAATCAGGATGACTACA+AGG | - | chr5.1:77417187-77417206 | MS.gene38028:intron | 35.0% | |
| TATGTTGTGCTTCAAGATTG+TGG | + | chr5.1:77417824-77417843 | None:intergenic | 35.0% | |
| TCTCAATGATCATACTACGT+AGG | + | chr5.1:77416152-77416171 | None:intergenic | 35.0% | |
| TGCAATTGAAACAGAAGATC+AGG | + | chr5.1:77415978-77415997 | None:intergenic | 35.0% | |
| TTATATGAAGGATCCTTCGT+CGG | + | chr5.1:77416340-77416359 | None:intergenic | 35.0% | |
| TTATGAATTGCCATGGTCAT+AGG | + | chr5.1:77417703-77417722 | None:intergenic | 35.0% | |
| TTGATATTCTTTACCGACGA+AGG | - | chr5.1:77416324-77416343 | MS.gene38028:intron | 35.0% | |
| ! | ACTTTATGCAGCATTTTCCA+TGG | - | chr5.1:77417548-77417567 | MS.gene38028:intron | 35.0% |
| ! | CACTTTCTGTTTTATACTGC+AGG | - | chr5.1:77418121-77418140 | MS.gene38028:intron | 35.0% |
| ! | CTAATTGGGAGTCTTATGAT+TGG | - | chr5.1:77417898-77417917 | MS.gene38028:intron | 35.0% |
| ! | CTGTCAGTTTTTCTGTTTTC+TGG | + | chr5.1:77418477-77418496 | None:intergenic | 35.0% |
| ! | CTTTATGCAGCATTTTCCAT+GGG | - | chr5.1:77417549-77417568 | MS.gene38028:intron | 35.0% |
| ! | TTTATGCAGCATTTTCCATG+GGG | - | chr5.1:77417550-77417569 | MS.gene38028:intron | 35.0% |
| ! | TTTTCTTATGTTGTCTTGCC+AGG | - | chr5.1:77416047-77416066 | MS.gene38028:intron | 35.0% |
| !! | ATACTCCGCTTTTGGAAATA+CGG | + | chr5.1:77416731-77416750 | None:intergenic | 35.0% |
| !! | CTTTAGAATTTCAATGCGGT+CGG | - | chr5.1:77418582-77418601 | MS.gene38028:intron | 35.0% |
| !!! | CACAACAATGTTTGTTTTGG+CGG | + | chr5.1:77416788-77416807 | None:intergenic | 35.0% |
| !!! | GTGTTTTGAAGAAGCTGATT+GGG | - | chr5.1:77418026-77418045 | MS.gene38028:intron | 35.0% |
| !!! | TGTTTTGAAGAAGCTGATTG+GGG | - | chr5.1:77418027-77418046 | MS.gene38028:intron | 35.0% |
| AACAATTGACCTTGCAGGTA+TGG | - | chr5.1:77417748-77417767 | MS.gene38028:intron | 40.0% | |
| AATAAGAAAGGCGGTATTGC+TGG | - | chr5.1:77418242-77418261 | MS.gene38028:intron | 40.0% | |
| AATCTTGAGCTAAAAGGCCA+AGG | - | chr5.1:77418609-77418628 | MS.gene38028:intron | 40.0% | |
| AATGCCAGTTAGATTGGAAC+TGG | + | chr5.1:77416574-77416593 | None:intergenic | 40.0% | |
| ACCAGTTTCTGTATGCAGAA+AGG | + | chr5.1:77416961-77416980 | None:intergenic | 40.0% | |
| ACCTTTCTGCATACAGAAAC+TGG | - | chr5.1:77416957-77416976 | MS.gene38028:intron | 40.0% | |
| ACTCTAACAATTGACCTTGC+AGG | - | chr5.1:77417743-77417762 | MS.gene38028:CDS | 40.0% | |
| AGGTTCTGCAAAGCAAATGT+TGG | - | chr5.1:77418737-77418756 | MS.gene38028:CDS | 40.0% | |
| AGTACATCACATCCTCAACA+CGG | + | chr5.1:77415710-77415729 | None:intergenic | 40.0% | |
| AGTTTCTGTATGCAGAAAGG+TGG | + | chr5.1:77416958-77416977 | None:intergenic | 40.0% | |
| ATAAGAAAGGCGGTATTGCT+GGG | - | chr5.1:77418243-77418262 | MS.gene38028:intron | 40.0% | |
| CAGTTACCTCAGCATATTTC+AGG | + | chr5.1:77417244-77417263 | None:intergenic | 40.0% | |
| CATTGAGACAGAAACAATGC+AGG | - | chr5.1:77416164-77416183 | MS.gene38028:intron | 40.0% | |
| GCAAAGGTAGACTGAATTTG+AGG | - | chr5.1:77418058-77418077 | MS.gene38028:intron | 40.0% | |
| GGAAATGGCACAATTAAGGA+TGG | + | chr5.1:77416635-77416654 | None:intergenic | 40.0% | |
| GGCACAATTAAGGATGGAAA+TGG | + | chr5.1:77416629-77416648 | None:intergenic | 40.0% | |
| GGCATTCAGAGATTACTACA+AGG | - | chr5.1:77417669-77417688 | MS.gene38028:CDS | 40.0% | |
| GGTATTAGTTCCTATGACCA+TGG | - | chr5.1:77417690-77417709 | MS.gene38028:CDS | 40.0% | |
| GGTTCTGCAAAGCAAATGTT+GGG | - | chr5.1:77418738-77418757 | MS.gene38028:CDS | 40.0% | |
| TCCCTGGCATCATTAATACA+AGG | + | chr5.1:77417146-77417165 | None:intergenic | 40.0% | |
| TGAGGACATTGAAGAACTAG+TGG | + | chr5.1:77417446-77417465 | None:intergenic | 40.0% | |
| TTCTTCAAAACACCTTGTCC+CGG | + | chr5.1:77418019-77418038 | None:intergenic | 40.0% | |
| TTTAACGGAGTCGATGAACT+AGG | - | chr5.1:77418164-77418183 | MS.gene38028:intron | 40.0% | |
| ! | ACATGTGGATTGCAGTAACT+AGG | + | chr5.1:77416832-77416851 | None:intergenic | 40.0% |
| ! | ATGGTTGGAATTGATAGCCA+CGG | - | chr5.1:77417767-77417786 | MS.gene38028:intron | 40.0% |
| ! | CATGTGGATTGCAGTAACTA+GGG | + | chr5.1:77416831-77416850 | None:intergenic | 40.0% |
| ! | GAGTCTTATGATTGGTGATC+TGG | - | chr5.1:77417906-77417925 | MS.gene38028:intron | 40.0% |
| !! | AGTCTTTTGAAAATCGCCCA+TGG | - | chr5.1:77418267-77418286 | MS.gene38028:intron | 40.0% |
| !! | GGTGCTGACATTTGATCTTT+GGG | - | chr5.1:77418643-77418662 | MS.gene38028:intron | 40.0% |
| !! | GTCTTTTGAAAATCGCCCAT+GGG | - | chr5.1:77418268-77418287 | MS.gene38028:intron | 40.0% |
| !! | TGGTGCTGACATTTGATCTT+TGG | - | chr5.1:77418642-77418661 | MS.gene38028:intron | 40.0% |
| !! | TTTCTGGTTAGTTACAGCAG+TGG | + | chr5.1:77418461-77418480 | None:intergenic | 40.0% |
| !!! | GGTGTTTTGAAGAAGCTGAT+TGG | - | chr5.1:77418025-77418044 | MS.gene38028:intron | 40.0% |
| AAGAAATTTGCCAAGAGGGG+AGG | + | chr5.1:77418349-77418368 | None:intergenic | 45.0% | |
| AAGGCCAAGGTCTACTTATG+TGG | - | chr5.1:77418622-77418641 | MS.gene38028:intron | 45.0% | |
| ACGGCAGTAAAAGAGACTGA+TGG | - | chr5.1:77417786-77417805 | MS.gene38028:intron | 45.0% | |
| AGCACCACATAAGTAGACCT+TGG | + | chr5.1:77418629-77418648 | None:intergenic | 45.0% | |
| ATTGACCTTGCAGGTATGGT+TGG | - | chr5.1:77417752-77417771 | MS.gene38028:intron | 45.0% | |
| CAATTCCAACCATACCTGCA+AGG | + | chr5.1:77417760-77417779 | None:intergenic | 45.0% | |
| CTCTTCAAGCTTCTGCTACT+CGG | - | chr5.1:77415736-77415755 | MS.gene38028:intron | 45.0% | |
| GAGTTCTCTCTCAAAGGACT+TGG | - | chr5.1:77417506-77417525 | MS.gene38028:intron | 45.0% | |
| GATGCAAGCGGAAAATTCCT+TGG | - | chr5.1:77418290-77418309 | MS.gene38028:intron | 45.0% | |
| GTTGTTGTGTTTCCGTGTTG+AGG | - | chr5.1:77415695-77415714 | MS.gene38028:CDS | 45.0% | |
| TATAATTGCTCCTCCCCTCT+TGG | - | chr5.1:77418336-77418355 | MS.gene38028:CDS | 45.0% | |
| TCAGCATATTTCAGGCCAAG+AGG | + | chr5.1:77417236-77417255 | None:intergenic | 45.0% | |
| TCTAACATGGAGAGCCGAAA+CGG | - | chr5.1:77417848-77417867 | MS.gene38028:intron | 45.0% | |
| TCTTGGCCTGAAATATGCTG+AGG | - | chr5.1:77417235-77417254 | MS.gene38028:CDS | 45.0% | |
| TGTCAACATTACACGTCCTG+AGG | + | chr5.1:77416423-77416442 | None:intergenic | 45.0% | |
| TTTCTATGGACTCTTCGTGC+AGG | - | chr5.1:77416693-77416712 | MS.gene38028:CDS | 45.0% | |
| TTTGGCGGTCGAGAAAAAGT+TGG | + | chr5.1:77416773-77416792 | None:intergenic | 45.0% | |
| ! | AATTTTCCGCTTGCATCCCA+TGG | + | chr5.1:77418287-77418306 | None:intergenic | 45.0% |
| ! | ATCAGTCTCTTTTACTGCCG+TGG | + | chr5.1:77417787-77417806 | None:intergenic | 45.0% |
| ! | ATTTTCCGCTTGCATCCCAT+GGG | + | chr5.1:77418286-77418305 | None:intergenic | 45.0% |
| !! | ATGTAATGGGTTAAGGTCCC+TGG | + | chr5.1:77417162-77417181 | None:intergenic | 45.0% |
| !! | AATTAAACTAAATTTAAATA+TGG | + | chr5.1:77415897-77415916 | None:intergenic | 5.0% |
| !!! | AATATTTTTAATGAATATAT+TGG | + | chr5.1:77416454-77416473 | None:intergenic | 5.0% |
| ACGTGTACGGTGTATGCATG+AGG | + | chr5.1:77417464-77417483 | None:intergenic | 50.0% | |
| GATTGGGGACACACTTGCAA+AGG | - | chr5.1:77418042-77418061 | MS.gene38028:intron | 50.0% | |
| GGTCAATGAATGCTGGAGCT+TGG | - | chr5.1:77418674-77418693 | MS.gene38028:intron | 50.0% | |
| TGAAACTAGGATCCGGGACA+AGG | - | chr5.1:77418004-77418023 | MS.gene38028:intron | 50.0% | |
| ! | ATGCAGCATTTTCCATGGGG+AGG | - | chr5.1:77417553-77417572 | MS.gene38028:intron | 50.0% |
| ! | GGGACATCATACTCCGCTTT+TGG | + | chr5.1:77416739-77416758 | None:intergenic | 50.0% |
| ! | TGCAGCATTTTCCATGGGGA+GGG | - | chr5.1:77417554-77417573 | MS.gene38028:intron | 50.0% |
| ! | TGGACTCTTCGTGCAGGTTT+TGG | - | chr5.1:77416699-77416718 | MS.gene38028:intron | 50.0% |
| ! | TGGTTAGTTACAGCAGTGGC+AGG | + | chr5.1:77418457-77418476 | None:intergenic | 50.0% |
| ! | TTTTCCTCATTACCACGGCG+AGG | - | chr5.1:77418208-77418227 | MS.gene38028:intron | 50.0% |
| !! | GAAGATCAGGAAGTGCCTAG+TGG | + | chr5.1:77415965-77415984 | None:intergenic | 50.0% |
| AATCGCCCATGGGATGCAAG+CGG | - | chr5.1:77418278-77418297 | MS.gene38028:intron | 55.0% | |
| CCACGCGATTGCACTCAAAC+TGG | - | chr5.1:77418697-77418716 | MS.gene38028:intron | 55.0% | |
| CCAGTTTGAGTGCAATCGCG+TGG | + | chr5.1:77418700-77418719 | None:intergenic | 55.0% | |
| TTAGAGTTCCTTCCTCGCCG+TGG | + | chr5.1:77418223-77418242 | None:intergenic | 55.0% | |
| CCTCATTACCACGGCGAGGA+AGG | - | chr5.1:77418212-77418231 | MS.gene38028:intron | 60.0% | |
| CTTGTGAGCTTCCCTCCCCA+TGG | + | chr5.1:77417568-77417587 | None:intergenic | 60.0% | |
| ! | CCTTCCTCGCCGTGGTAATG+AGG | + | chr5.1:77418215-77418234 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77415693 | 77418785 | 77415693 | ID=MS.gene38028 |
| chr5.1 | mRNA | 77415693 | 77418785 | 77415693 | ID=MS.gene38028.t1;Parent=MS.gene38028 |
| chr5.1 | exon | 77418711 | 77418785 | 77418711 | ID=MS.gene38028.t1.exon1;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77418711 | 77418785 | 77418711 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77418293 | 77418409 | 77418293 | ID=MS.gene38028.t1.exon2;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77418293 | 77418409 | 77418293 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77417669 | 77417763 | 77417669 | ID=MS.gene38028.t1.exon3;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77417669 | 77417763 | 77417669 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77417222 | 77417315 | 77417222 | ID=MS.gene38028.t1.exon4;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77417222 | 77417315 | 77417222 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77416788 | 77416919 | 77416788 | ID=MS.gene38028.t1.exon5;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77416788 | 77416919 | 77416788 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77416609 | 77416713 | 77416609 | ID=MS.gene38028.t1.exon6;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77416609 | 77416713 | 77416609 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77416415 | 77416465 | 77416415 | ID=MS.gene38028.t1.exon7;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77416415 | 77416465 | 77416415 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77416167 | 77416335 | 77416167 | ID=MS.gene38028.t1.exon8;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77416167 | 77416335 | 77416167 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| chr5.1 | exon | 77415693 | 77415739 | 77415693 | ID=MS.gene38028.t1.exon9;Parent=MS.gene38028.t1 |
| chr5.1 | CDS | 77415693 | 77415739 | 77415693 | ID=cds.MS.gene38028.t1;Parent=MS.gene38028.t1 |
| Gene Sequence |
| Protein sequence |
