AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056988


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056988.t1 MTR_2g099520 88.367 490 29 4 1 467 1 485 0.0 789
MS.gene056988.t1 MTR_8g018800 50.262 191 68 9 1 180 1 175 1.07e-35 140
MS.gene056988.t1 MTR_8g018800 48.571 210 71 8 276 458 477 676 1.38e-27 116
MS.gene056988.t1 MTR_8g018800 30.660 212 106 8 101 301 179 360 8.50e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056988.t1 AT1G72790 32.941 255 148 6 2 236 3 254 8.16e-30 122
MS.gene056988.t1 AT1G72790 53.571 112 42 5 348 458 438 540 8.86e-14 73.9
MS.gene056988.t1 AT5G57070 30.693 202 109 6 11 183 8 207 5.66e-17 84.0

Find 91 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGTGCTGTTTCTGTTTC+TGG 0.001891 2.1:-5081631 None:intergenic
TGTCTATGCTTCTTCTTCTT+TGG 0.180600 2.1:-5082084 None:intergenic
CTGTTTCTGTTTCTGGTTCC+AGG 0.200259 2.1:-5081624 None:intergenic
TCAACACCTGGGTTGGGATT+TGG 0.247850 2.1:-5082516 None:intergenic
GCTAAGGAAGCCACAGAATA+TGG 0.251634 2.1:-5081509 None:intergenic
AAGAAATTTCTTCACCCTTC+TGG 0.252101 2.1:+5081275 MS.gene056988:CDS
TCCAGGTTCTTTACCACTAA+TGG 0.263565 2.1:-5082475 None:intergenic
AAAGTTTCAGAGCTGGTTTA+AGG 0.293090 2.1:+5082562 MS.gene056988:CDS
AAAGACTCTTGCCGGAGATC+TGG 0.320191 2.1:-5081718 None:intergenic
TCTGTTTCTGGTTCCAGGTT+TGG 0.325114 2.1:-5081619 None:intergenic
CTGAATTAGGTTTGAAAATG+TGG 0.336482 2.1:-5081441 None:intergenic
TCTTTGAGGAAGCAGGAGAT+AGG 0.337828 2.1:+5082600 MS.gene056988:CDS
GGAGGTGGAGGAGGAGGCGG+TGG 0.347190 2.1:-5082342 None:intergenic
TGCAGAAAGAAAGAATAAAA+AGG 0.356692 2.1:+5081957 MS.gene056988:CDS
ATAGAACAAGCAAAAGGTTA+AGG 0.377143 2.1:-5081483 None:intergenic
CTATGCTTCTTCTTCTTTGG+AGG 0.383439 2.1:-5082081 None:intergenic
GGTGGAGGAGGAGGCGGTGG+AGG 0.388825 2.1:-5082339 None:intergenic
AAGATAGAACTTCATATAAC+AGG 0.397696 2.1:+5081674 MS.gene056988:CDS
CGACCCACAAAGACTCTTGC+CGG 0.400834 2.1:-5081726 None:intergenic
GTTCAATGGCGACTCATTAC+CGG 0.410358 2.1:-5082310 None:intergenic
TTGTTATCAACACCTGGGTT+GGG 0.412780 2.1:-5082522 None:intergenic
ATCTCCGGCAAGAGTCTTTG+TGG 0.427609 2.1:+5081722 MS.gene056988:CDS
CCAGCTTTGTTATCAACACC+TGG 0.434293 2.1:-5082528 None:intergenic
ATAGGGAGGTCTAATCTCTA+TGG 0.440443 2.1:+5082618 MS.gene056988:CDS
TAGAACAAGCAAAAGGTTAA+GGG 0.449988 2.1:-5081482 None:intergenic
AGCATGGAAGTTCAAGGTGC+AGG 0.453582 2.1:+5082377 MS.gene056988:CDS
AATGAATTCTTTGAGGAAGC+AGG 0.456178 2.1:+5082593 MS.gene056988:CDS
TGTTAACCGTTACCGTGGAT+TGG 0.458388 2.1:+5081786 MS.gene056988:CDS
ATCTTGAACGGAGGTGGAGG+AGG 0.459119 2.1:-5082351 None:intergenic
GCGGCTGAGGCGGCGGCGGT+TGG 0.464988 2.1:-5081314 None:intergenic
AACGGAGGTGGAGGAGGAGG+CGG 0.467554 2.1:-5082345 None:intergenic
TGGAGAAAATGAATTCTTTG+AGG 0.471002 2.1:+5082586 MS.gene056988:CDS
ATGCAAGTGCAATTACTAGA+AGG 0.473585 2.1:-5081378 None:intergenic
TAGCATTAGTAGTTCAAGTT+CGG 0.474176 2.1:+5082419 MS.gene056988:CDS
TCGTGTGTTTGTGTCTGAAA+AGG 0.474236 2.1:-5081581 None:intergenic
TTCATTGAAAGTTTCAGAGC+TGG 0.482129 2.1:+5082555 MS.gene056988:CDS
TTGAACGGAGGTGGAGGAGG+AGG 0.483916 2.1:-5082348 None:intergenic
AAGACTCTTGCCGGAGATCT+GGG 0.491324 2.1:-5081717 None:intergenic
TGAATTAGGTTTGAAAATGT+GGG 0.491533 2.1:-5081440 None:intergenic
GTTCTATTTGCCATATTCTG+TGG 0.492687 2.1:+5081499 MS.gene056988:CDS
GCTGGCATCTTGAACGGAGG+TGG 0.497389 2.1:-5082357 None:intergenic
CTTTGAGGAAGCAGGAGATA+GGG 0.497665 2.1:+5082601 MS.gene056988:CDS
TACACCAGTAGATCAATTCC+AGG 0.504782 2.1:-5082492 None:intergenic
AGAACCTGGAATTGATCTAC+TGG 0.506585 2.1:+5082488 MS.gene056988:CDS
ATGAGCGGCTGAGGCGGCGG+CGG 0.506657 2.1:-5081318 None:intergenic
AAATCGCCACCGTTCATCTC+CGG 0.510844 2.1:-5081749 None:intergenic
GAATAGAACAAATCATGAAA+AGG 0.514757 2.1:-5082183 None:intergenic
TTTCAGAGCTGGTTTAAGGA+TGG 0.515914 2.1:+5082566 MS.gene056988:CDS
TTTGTTATCAACACCTGGGT+TGG 0.516139 2.1:-5082523 None:intergenic
GAACTTCATATAACAGGTTG+AGG 0.520332 2.1:+5081680 MS.gene056988:CDS
GGCATCTTGAACGGAGGTGG+AGG 0.520376 2.1:-5082354 None:intergenic
GAAGAAGGCATAGTAGTAGC+AGG 0.520460 2.1:-5082147 None:intergenic
AGATATAGATGAAGAAGTAG+TGG 0.520807 2.1:+5082443 MS.gene056988:CDS
TTAACTCATACCCAGATCTC+CGG 0.525003 2.1:+5081707 MS.gene056988:CDS
AGTATGAGCGGCTGAGGCGG+CGG 0.526310 2.1:-5081321 None:intergenic
CAAGAGTCTTTGTGGGTCGC+CGG 0.528563 2.1:+5081730 MS.gene056988:CDS
GTGGAGTTACCAACCATTAG+TGG 0.532115 2.1:+5082462 MS.gene056988:CDS
CATGCTGGCATCTTGAACGG+AGG 0.535787 2.1:-5082360 None:intergenic
TGCACCTTGAACTTCCATGC+TGG 0.537840 2.1:-5082375 None:intergenic
ACCATTAGTGGTAAAGAACC+TGG 0.541647 2.1:+5082474 MS.gene056988:CDS
GCAGTAAACACATCTTTGAA+AGG 0.544318 2.1:+5081862 MS.gene056988:CDS
GATGCCAGCATGGAAGTTCA+AGG 0.546768 2.1:+5082371 MS.gene056988:CDS
AAAGTGAGTATGAGCGGCTG+AGG 0.547046 2.1:-5081327 None:intergenic
TTCCATGCTGGCATCTTGAA+CGG 0.547115 2.1:-5082363 None:intergenic
TCTCCGGCAAGAGTCTTTGT+GGG 0.549132 2.1:+5081723 MS.gene056988:CDS
TGGCAAATAGAACAAGCAAA+AGG 0.553715 2.1:-5081489 None:intergenic
CCAAAACCAAATGGAAGGAG+AGG 0.555034 2.1:+5081252 None:intergenic
GGAAAGAACAAGAAGAAGCA+AGG 0.563591 2.1:+5081883 MS.gene056988:CDS
TTAAGTCCAATCCACGGTAA+CGG 0.567775 2.1:-5081792 None:intergenic
GCATGGAAGTTCAAGGTGCA+GGG 0.568539 2.1:+5082378 MS.gene056988:CDS
GTGAGTATGAGCGGCTGAGG+CGG 0.568620 2.1:-5081324 None:intergenic
TGTGGGTCGCCGGAGATGAA+CGG 0.569230 2.1:+5081740 MS.gene056988:CDS
CCAGGTGTTGATAACAAAGC+TGG 0.571763 2.1:+5082528 MS.gene056988:CDS
CTCCGTTCAAGATGCCAGCA+TGG 0.573589 2.1:+5082361 MS.gene056988:CDS
GGTGGAGGTATTGAGTTCAA+TGG 0.573725 2.1:-5082324 None:intergenic
GAAGTGAAAGAGTGCAATGT+AGG 0.576308 2.1:-5081418 None:intergenic
AAAATGCAACAATCTTTGAA+AGG 0.577936 2.1:+5082000 MS.gene056988:CDS
GGTTCTTTACCACTAATGGT+TGG 0.578209 2.1:-5082471 None:intergenic
AGAGTATGAGAAACCAAACC+TGG 0.583436 2.1:+5081606 MS.gene056988:CDS
AGAAGAAGAAGAAAGCATCA+AGG 0.584854 2.1:+5081831 MS.gene056988:CDS
TCAAACCAAAACCAAATGGA+AGG 0.610532 2.1:+5081247 None:intergenic
CAGCTTTGTTATCAACACCT+GGG 0.618684 2.1:-5082527 None:intergenic
TTAAGTTTAAGTCCAATCCA+CGG 0.628432 2.1:-5081798 None:intergenic
TGAGGAAGCAGGAGATAGGG+AGG 0.629953 2.1:+5082604 MS.gene056988:CDS
CCCTTCTGGCTGCAAAACAG+CGG 0.638122 2.1:+5081289 MS.gene056988:CDS
ACTCATGTTAACCGTTACCG+TGG 0.638480 2.1:+5081781 MS.gene056988:CDS
TGATAACAGTGCCAGAGCTG+AGG 0.639850 2.1:-5081351 None:intergenic
TGAGGAAAAGTGAGTATGAG+CGG 0.649948 2.1:-5081333 None:intergenic
GTGTATCCAAATCCCAACCC+AGG 0.669447 2.1:+5082510 MS.gene056988:CDS
GCTGAAACTTGATGTTGTGA+CGG 0.683300 2.1:-5082243 None:intergenic
GGGTCGCCGGAGATGAACGG+TGG 0.698178 2.1:+5081743 MS.gene056988:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTCAGTAAAAAAGAGTT+GGG + chr2.1:5081456-5081475 MS.gene056988:CDS 20.0%
!! TATGATTATGTCAAAAACAA+AGG + chr2.1:5082266-5082285 MS.gene056988:CDS 20.0%
! AAAATGCAACAATCTTTGAA+AGG + chr2.1:5082000-5082019 MS.gene056988:CDS 25.0%
! AAGATAGAACTTCATATAAC+AGG + chr2.1:5081674-5081693 MS.gene056988:CDS 25.0%
! CTAATTCAGTAAAAAAGAGT+TGG + chr2.1:5081455-5081474 MS.gene056988:CDS 25.0%
! GAATAGAACAAATCATGAAA+AGG - chr2.1:5082186-5082205 None:intergenic 25.0%
! TAAAAAGGTAATTGTAACGA+AGG + chr2.1:5081972-5081991 MS.gene056988:CDS 25.0%
! TGAATTAGGTTTGAAAATGT+GGG - chr2.1:5081443-5081462 None:intergenic 25.0%
! TGCAGAAAGAAAGAATAAAA+AGG + chr2.1:5081957-5081976 MS.gene056988:CDS 25.0%
!!! CAACTCTTTTTTACTGAATT+AGG - chr2.1:5081457-5081476 None:intergenic 25.0%
AGATATAGATGAAGAAGTAG+TGG + chr2.1:5082443-5082462 MS.gene056988:CDS 30.0%
ATAGAACAAGCAAAAGGTTA+AGG - chr2.1:5081486-5081505 None:intergenic 30.0%
CTGAATTAGGTTTGAAAATG+TGG - chr2.1:5081444-5081463 None:intergenic 30.0%
TAGAACAAGCAAAAGGTTAA+GGG - chr2.1:5081485-5081504 None:intergenic 30.0%
TATGTCAAAAACAAAGGATG+AGG + chr2.1:5082272-5082291 MS.gene056988:CDS 30.0%
TGGAGAAAATGAATTCTTTG+AGG + chr2.1:5082586-5082605 MS.gene056988:CDS 30.0%
TTAAGTTTAAGTCCAATCCA+CGG - chr2.1:5081801-5081820 None:intergenic 30.0%
! TAGCATTAGTAGTTCAAGTT+CGG + chr2.1:5082419-5082438 MS.gene056988:CDS 30.0%
!! GGTTTGATTTTGATCTTCAT+AGG - chr2.1:5081563-5081582 None:intergenic 30.0%
!!! CATTGTTGTTGTTTTTGCTA+AGG - chr2.1:5081528-5081547 None:intergenic 30.0%
!!! TTAATGGTTTTGGTGATGAA+GGG - chr2.1:5082646-5082665 None:intergenic 30.0%
AAGAAATTTCTTCACCCTTC+TGG + chr2.1:5081275-5081294 MS.gene056988:CDS 35.0%
ATGCAAGTGCAATTACTAGA+AGG - chr2.1:5081381-5081400 None:intergenic 35.0%
GAACTTCATATAACAGGTTG+AGG + chr2.1:5081680-5081699 MS.gene056988:CDS 35.0%
GCAGTAAACACATCTTTGAA+AGG + chr2.1:5081862-5081881 MS.gene056988:CDS 35.0%
GTTCTATTTGCCATATTCTG+TGG + chr2.1:5081499-5081518 MS.gene056988:CDS 35.0%
TGGCAAATAGAACAAGCAAA+AGG - chr2.1:5081492-5081511 None:intergenic 35.0%
TGTCTATGCTTCTTCTTCTT+TGG - chr2.1:5082087-5082106 None:intergenic 35.0%
TTCATTGAAAGTTTCAGAGC+TGG + chr2.1:5082555-5082574 MS.gene056988:CDS 35.0%
! AAAGTTTCAGAGCTGGTTTA+AGG + chr2.1:5082562-5082581 MS.gene056988:CDS 35.0%
! AATGAATTCTTTGAGGAAGC+AGG + chr2.1:5082593-5082612 MS.gene056988:CDS 35.0%
! GAGGATTTTTCTGTGATTAC+CGG + chr2.1:5082291-5082310 MS.gene056988:CDS 35.0%
! TTTTGATCTTCATAGGAACG+TGG - chr2.1:5081556-5081575 None:intergenic 35.0%
!! AGAAGAAGAAGAAAGCATCA+AGG + chr2.1:5081831-5081850 MS.gene056988:CDS 35.0%
ACCATTAGTGGTAAAGAACC+TGG + chr2.1:5082474-5082493 MS.gene056988:CDS 40.0%
AGAACCTGGAATTGATCTAC+TGG + chr2.1:5082488-5082507 MS.gene056988:CDS 40.0%
AGAGTATGAGAAACCAAACC+TGG + chr2.1:5081606-5081625 MS.gene056988:CDS 40.0%
ATAGGGAGGTCTAATCTCTA+TGG + chr2.1:5082618-5082637 MS.gene056988:CDS 40.0%
CTATGCTTCTTCTTCTTTGG+AGG - chr2.1:5082084-5082103 None:intergenic 40.0%
GAGTACTCATACCAAAAACG+TGG - chr2.1:5081652-5081671 None:intergenic 40.0%
GCTGAAACTTGATGTTGTGA+CGG - chr2.1:5082246-5082265 None:intergenic 40.0%
GGAAAGAACAAGAAGAAGCA+AGG + chr2.1:5081883-5081902 MS.gene056988:CDS 40.0%
GGAGAAGAAGAAGAAGAAGA+AGG - chr2.1:5082165-5082184 None:intergenic 40.0%
GGTTCTTTACCACTAATGGT+TGG - chr2.1:5082474-5082493 None:intergenic 40.0%
TACACCAGTAGATCAATTCC+AGG - chr2.1:5082495-5082514 None:intergenic 40.0%
TCCAGGTTCTTTACCACTAA+TGG - chr2.1:5082478-5082497 None:intergenic 40.0%
TCGTGTGTTTGTGTCTGAAA+AGG - chr2.1:5081584-5081603 None:intergenic 40.0%
TGAGGAAAAGTGAGTATGAG+CGG - chr2.1:5081336-5081355 None:intergenic 40.0%
TTAACTCATACCCAGATCTC+CGG + chr2.1:5081707-5081726 MS.gene056988:CDS 40.0%
TTAAGTCCAATCCACGGTAA+CGG - chr2.1:5081795-5081814 None:intergenic 40.0%
TTGTTATCAACACCTGGGTT+GGG - chr2.1:5082525-5082544 None:intergenic 40.0%
! GAAGTGAAAGAGTGCAATGT+AGG - chr2.1:5081421-5081440 None:intergenic 40.0%
! TTTCAGAGCTGGTTTAAGGA+TGG + chr2.1:5082566-5082585 MS.gene056988:CDS 40.0%
! TTTGTTATCAACACCTGGGT+TGG - chr2.1:5082526-5082545 None:intergenic 40.0%
!! CAGCTTTGTTATCAACACCT+GGG - chr2.1:5082530-5082549 None:intergenic 40.0%
ACTCATGTTAACCGTTACCG+TGG + chr2.1:5081781-5081800 MS.gene056988:CDS 45.0%
GCTAAGGAAGCCACAGAATA+TGG - chr2.1:5081512-5081531 None:intergenic 45.0%
GTGGAGTTACCAACCATTAG+TGG + chr2.1:5082462-5082481 MS.gene056988:CDS 45.0%
GTTCAATGGCGACTCATTAC+CGG - chr2.1:5082313-5082332 None:intergenic 45.0%
TGTTAACCGTTACCGTGGAT+TGG + chr2.1:5081786-5081805 MS.gene056988:CDS 45.0%
TTCCATGCTGGCATCTTGAA+CGG - chr2.1:5082366-5082385 None:intergenic 45.0%
! CAGAAACAGCACCACGTTTT+TGG + chr2.1:5081638-5081657 MS.gene056988:CDS 45.0%
! CTTTGAGGAAGCAGGAGATA+GGG + chr2.1:5082601-5082620 MS.gene056988:CDS 45.0%
! GAAGAAGGCATAGTAGTAGC+AGG - chr2.1:5082150-5082169 None:intergenic 45.0%
! TCTTTGAGGAAGCAGGAGAT+AGG + chr2.1:5082600-5082619 MS.gene056988:CDS 45.0%
!! CCAGCTTTGTTATCAACACC+TGG - chr2.1:5082531-5082550 None:intergenic 45.0%
!! CCAGGTGTTGATAACAAAGC+TGG + chr2.1:5082528-5082547 MS.gene056988:CDS 45.0%
!! CTGTTTCTGTTTCTGGTTCC+AGG - chr2.1:5081627-5081646 None:intergenic 45.0%
!! GGTGGAGGTATTGAGTTCAA+TGG - chr2.1:5082327-5082346 None:intergenic 45.0%
!! TACTCACTTTTCCTCAGCTC+TGG + chr2.1:5081340-5081359 MS.gene056988:CDS 45.0%
!! TCTGTTTCTGGTTCCAGGTT+TGG - chr2.1:5081622-5081641 None:intergenic 45.0%
AAAGACTCTTGCCGGAGATC+TGG - chr2.1:5081721-5081740 None:intergenic 50.0%
AAAGTGAGTATGAGCGGCTG+AGG - chr2.1:5081330-5081349 None:intergenic 50.0%
AAATCGCCACCGTTCATCTC+CGG - chr2.1:5081752-5081771 None:intergenic 50.0%
AAGACTCTTGCCGGAGATCT+GGG - chr2.1:5081720-5081739 None:intergenic 50.0%
AGCATGGAAGTTCAAGGTGC+AGG + chr2.1:5082377-5082396 MS.gene056988:CDS 50.0%
ATCTCCGGCAAGAGTCTTTG+TGG + chr2.1:5081722-5081741 MS.gene056988:CDS 50.0%
GATGCCAGCATGGAAGTTCA+AGG + chr2.1:5082371-5082390 MS.gene056988:CDS 50.0%
GCATGGAAGTTCAAGGTGCA+GGG + chr2.1:5082378-5082397 MS.gene056988:CDS 50.0%
GTGTATCCAAATCCCAACCC+AGG + chr2.1:5082510-5082529 MS.gene056988:CDS 50.0%
TCTCCGGCAAGAGTCTTTGT+GGG + chr2.1:5081723-5081742 MS.gene056988:CDS 50.0%
TGATAACAGTGCCAGAGCTG+AGG - chr2.1:5081354-5081373 None:intergenic 50.0%
TGCACCTTGAACTTCCATGC+TGG - chr2.1:5082378-5082397 None:intergenic 50.0%
! TCAACACCTGGGTTGGGATT+TGG - chr2.1:5082519-5082538 None:intergenic 50.0%
!! CGTGGTGCTGTTTCTGTTTC+TGG - chr2.1:5081634-5081653 None:intergenic 50.0%
ATCTTGAACGGAGGTGGAGG+AGG - chr2.1:5082354-5082373 None:intergenic 55.0%
CAAGAGTCTTTGTGGGTCGC+CGG + chr2.1:5081730-5081749 MS.gene056988:CDS 55.0%
CATGCTGGCATCTTGAACGG+AGG - chr2.1:5082363-5082382 None:intergenic 55.0%
CGACCCACAAAGACTCTTGC+CGG - chr2.1:5081729-5081748 None:intergenic 55.0%
CTCCGTTCAAGATGCCAGCA+TGG + chr2.1:5082361-5082380 MS.gene056988:CDS 55.0%
TGAGGAAGCAGGAGATAGGG+AGG + chr2.1:5082604-5082623 MS.gene056988:CDS 55.0%
! CCCTTCTGGCTGCAAAACAG+CGG + chr2.1:5081289-5081308 MS.gene056988:CDS 55.0%
!! CCGCTGTTTTGCAGCCAGAA+GGG - chr2.1:5081292-5081311 None:intergenic 55.0%
GCTGGCATCTTGAACGGAGG+TGG - chr2.1:5082360-5082379 None:intergenic 60.0%
GGCATCTTGAACGGAGGTGG+AGG - chr2.1:5082357-5082376 None:intergenic 60.0%
GTGAGTATGAGCGGCTGAGG+CGG - chr2.1:5081327-5081346 None:intergenic 60.0%
TGTGGGTCGCCGGAGATGAA+CGG + chr2.1:5081740-5081759 MS.gene056988:CDS 60.0%
TTGAACGGAGGTGGAGGAGG+AGG - chr2.1:5082351-5082370 None:intergenic 60.0%
!! GCCGCTGTTTTGCAGCCAGA+AGG - chr2.1:5081293-5081312 None:intergenic 60.0%
AACGGAGGTGGAGGAGGAGG+CGG - chr2.1:5082348-5082367 None:intergenic 65.0%
AGTATGAGCGGCTGAGGCGG+CGG - chr2.1:5081324-5081343 None:intergenic 65.0%
GGGTCGCCGGAGATGAACGG+TGG + chr2.1:5081743-5081762 MS.gene056988:CDS 70.0%
ATGAGCGGCTGAGGCGGCGG+CGG - chr2.1:5081321-5081340 None:intergenic 75.0%
GGAGGTGGAGGAGGAGGCGG+TGG - chr2.1:5082345-5082364 None:intergenic 75.0%
GGTGGAGGAGGAGGCGGTGG+AGG - chr2.1:5082342-5082361 None:intergenic 75.0%
! GCGGCTGAGGCGGCGGCGGT+TGG - chr2.1:5081317-5081336 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5081262 5082665 5081262 ID=MS.gene056988
chr2.1 mRNA 5081262 5082665 5081262 ID=MS.gene056988.t1;Parent=MS.gene056988
chr2.1 exon 5081262 5082665 5081262 ID=MS.gene056988.t1.exon1;Parent=MS.gene056988.t1
chr2.1 CDS 5081262 5082665 5081262 ID=cds.MS.gene056988.t1;Parent=MS.gene056988.t1
Gene Sequence

>MS.gene056988

ATGGAAGGAGAGGAAGAAATTTCTTCACCCTTCTGGCTGCAAAACAGCGGCGCCAACCGCCGCCGCCTCAGCCGCTCATACTCACTTTTCCTCAGCTCTGGCACTGTTATCATAGTCCTTCTAGTAATTGCACTTGCATTCATCTTAGTCATAGTTCCTACATTGCACTCTTTCACTTCCCACATTTTCAAACCTAATTCAGTAAAAAAGAGTTGGGATTCCCTTAACCTTTTGCTTGTTCTATTTGCCATATTCTGTGGCTTCCTTAGCAAAAACAACAACAATGAAAGTCCACGTTCCTATGAAGATCAAAATCAAACCTTTTCAGACACAAACACACGACAAGAGTATGAGAAACCAAACCTGGAACCAGAAACAGAAACAGCACCACGTTTTTGGTATGAGTACTCAGAAGATAGAACTTCATATAACAGGTTGAGGAGTTTTAACTCATACCCAGATCTCCGGCAAGAGTCTTTGTGGGTCGCCGGAGATGAACGGTGGCGATTTAGCGATGATACTCATGTTAACCGTTACCGTGGATTGGACTTAAACTTAAAAGAAGAAAAAGAAGAAGAAGAAAGCATCAAGGACATTATTGCAGTAAACACATCTTTGAAAGGAAAGAACAAGAAGAAGCAAGGATCAGAAACGCAGCAATCTGAAACAATTGAGAAAACGAAAAATAACACTGCTGCAGAAAGAAAGAATAAAAAGGTAATTGTAACGAAGGATGAGAAAATGCAACAATCTTTGAAAGGAAAGAAGAAACATAGACATAAAAGCGTTGAAAATTTTCAGAACATTATGAATTCTGAACCTCCAAAGAAGAAGAAGCATAGACATAAAAGCTTTGAAAATTTTCAGAGCATTCTGAATTCTGAACCTGCTACTACTATGCCTTCTTCTTCTTCTTCTTCTCCTTTTCATGATTTGTTCTATTCTAAGAAAAACAAACAGAAGAAACTTAACTCTATTTCGCCGTCACAACATCAAGTTTCAGCTATGATTATGTCAAAAACAAAGGATGAGGATTTTTCTGTGATTACCGGTAATGAGTCGCCATTGAACTCAATACCTCCACCGCCTCCTCCTCCACCTCCGTTCAAGATGCCAGCATGGAAGTTCAAGGTGCAGGGTGACTTTGTTAGAATAGATAGCATTAGTAGTTCAAGTTCGGTAGATATAGATGAAGAAGTAGTGGAGTTACCAACCATTAGTGGTAAAGAACCTGGAATTGATCTACTGGTGTATCCAAATCCCAACCCAGGTGTTGATAACAAAGCTGGTAGTTTCATTGAAAGTTTCAGAGCTGGTTTAAGGATGGAGAAAATGAATTCTTTGAGGAAGCAGGAGATAGGGAGGTCTAATCTCTATGGTACCCTTCATCACCAAAACCATTAA

Protein sequence

>MS.gene056988.t1

MEGEEEISSPFWLQNSGANRRRLSRSYSLFLSSGTVIIVLLVIALAFILVIVPTLHSFTSHIFKPNSVKKSWDSLNLLLVLFAIFCGFLSKNNNNESPRSYEDQNQTFSDTNTRQEYEKPNLEPETETAPRFWYEYSEDRTSYNRLRSFNSYPDLRQESLWVAGDERWRFSDDTHVNRYRGLDLNLKEEKEEEESIKDIIAVNTSLKGKNKKKQGSETQQSETIEKTKNNTAAERKNKKVIVTKDEKMQQSLKGKKKHRHKSVENFQNIMNSEPPKKKKHRHKSFENFQSILNSEPATTMPSSSSSSPFHDLFYSKKNKQKKLNSISPSQHQVSAMIMSKTKDEDFSVITGNESPLNSIPPPPPPPPPFKMPAWKFKVQGDFVRIDSISSSSSVDIDEEVVELPTISGKEPGIDLLVYPNPNPGVDNKAGSFIESFRAGLRMEKMNSLRKQEIGRSNLYGTLHHQNH