AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38078.t1 MTR_7g005280 75.686 255 24 7 1 219 4 256 1.63e-123 350
MS.gene38078.t1 MTR_8g099750 53.299 197 76 6 1 187 4 194 1.59e-65 202
MS.gene38078.t1 MTR_7g070140 64.417 163 18 2 57 219 12 134 6.17e-64 195
MS.gene38078.t1 MTR_3g098810 51.185 211 84 5 1 193 4 213 6.59e-64 198
MS.gene38078.t1 MTR_3g098810 60.403 149 57 2 1 148 4 151 1.66e-57 180
MS.gene38078.t1 MTR_4g081870 59.119 159 51 4 12 160 9 163 8.65e-57 181
MS.gene38078.t1 MTR_5g041940 57.500 160 54 3 10 159 1 156 4.93e-56 179
MS.gene38078.t1 MTR_7g085220 50.000 178 74 3 9 171 5 182 7.59e-56 181
MS.gene38078.t1 MTR_2g080010 56.707 164 52 4 12 158 15 176 1.55e-54 178
MS.gene38078.t1 MTR_4g089135 54.237 177 50 4 11 158 14 188 2.78e-54 177
MS.gene38078.t1 MTR_7g070150 89.474 95 7 2 100 194 1 92 2.90e-54 169
MS.gene38078.t1 MTR_7g100990 53.459 159 62 4 7 155 6 162 3.36e-53 174
MS.gene38078.t1 MTR_2157s0010 54.321 162 58 4 12 158 8 168 1.02e-52 171
MS.gene38078.t1 MTR_3g088110 52.273 176 70 3 9 175 4 174 6.35e-52 169
MS.gene38078.t1 MTR_2g093810 53.247 154 60 3 12 155 14 165 2.82e-50 166
MS.gene38078.t1 MTR_4g035590 55.484 155 57 5 12 159 8 157 5.16e-50 166
MS.gene38078.t1 MTR_3g064580 56.329 158 56 3 10 158 4 157 5.95e-50 172
MS.gene38078.t1 MTR_2g062730 48.780 164 74 3 3 159 1 161 7.16e-50 166
MS.gene38078.t1 MTR_2g079990 51.124 178 77 3 8 179 12 185 9.51e-50 166
MS.gene38078.t1 MTR_3g109340 50.888 169 76 4 9 173 19 184 1.22e-49 165
MS.gene38078.t1 MTR_3g109340 50.588 170 76 4 9 173 19 185 1.80e-49 165
MS.gene38078.t1 MTR_2g064090 50.575 174 72 5 10 174 4 172 5.51e-49 163
MS.gene38078.t1 MTR_6g084430 50.299 167 75 3 9 171 2 164 6.34e-49 162
MS.gene38078.t1 MTR_1g008740 49.714 175 80 4 9 177 10 182 7.08e-49 163
MS.gene38078.t1 MTR_1g008740 49.714 175 80 4 9 177 24 196 7.46e-49 163
MS.gene38078.t1 MTR_5g021710 45.213 188 92 4 9 189 5 188 1.22e-48 162
MS.gene38078.t1 MTR_4g036030 49.405 168 74 4 12 172 7 170 1.68e-48 162
MS.gene38078.t1 MTR_8g076110 50.000 164 70 5 12 168 6 164 1.80e-48 161
MS.gene38078.t1 MTR_8g059170 49.020 204 74 8 9 202 11 194 2.95e-48 161
MS.gene38078.t1 MTR_8g094580 44.700 217 94 8 8 213 3 204 3.37e-48 159
MS.gene38078.t1 MTR_3g096920 50.276 181 74 6 8 179 3 176 3.64e-48 160
MS.gene38078.t1 MTR_5g012080 46.429 168 79 3 11 170 6 170 4.57e-48 161
MS.gene38078.t1 MTR_7g085260 49.425 174 79 4 10 175 15 187 5.52e-48 162
MS.gene38078.t1 MTR_4g101680 50.000 162 70 3 11 165 6 163 9.02e-48 160
MS.gene38078.t1 MTR_4g108760 51.235 162 67 4 5 158 10 167 2.57e-47 159
MS.gene38078.t1 MTR_8g024480 45.977 174 72 3 4 159 7 176 3.52e-47 161
MS.gene38078.t1 MTR_5g076850 53.503 157 61 4 10 158 4 156 4.20e-47 164
MS.gene38078.t1 MTR_3g435150 50.000 164 70 3 3 158 7 166 4.43e-47 157
MS.gene38078.t1 MTR_1g069805 44.175 206 107 4 12 212 10 212 5.34e-47 156
MS.gene38078.t1 MTR_6g032770 47.929 169 78 3 5 165 11 177 1.36e-46 158
MS.gene38078.t1 MTR_3g070030 50.000 170 70 5 6 165 13 177 2.11e-46 157
MS.gene38078.t1 MTR_6g477900 46.893 177 78 5 10 175 4 175 3.68e-46 153
MS.gene38078.t1 MTR_1g096430 49.045 157 69 3 9 158 4 156 4.94e-46 155
MS.gene38078.t1 MTR_5g090970 45.498 211 89 6 5 201 12 210 5.60e-46 154
MS.gene38078.t1 MTR_5g090970 45.283 212 89 6 5 201 12 211 1.66e-45 153
MS.gene38078.t1 MTR_2g079990 44.776 201 73 3 8 174 12 208 1.88e-45 155
MS.gene38078.t1 MTR_6g012670 48.466 163 72 4 4 158 12 170 2.46e-45 153
MS.gene38078.t1 MTR_2g068880 39.910 223 105 4 4 208 15 226 3.41e-45 152
MS.gene38078.t1 MTR_2g078700 51.266 158 67 3 9 158 20 175 4.25e-45 154
MS.gene38078.t1 MTR_2g068920 45.355 183 80 4 2 166 12 192 7.25e-45 151
MS.gene38078.t1 MTR_2g064470 43.564 202 86 7 9 203 8 188 1.38e-44 151
MS.gene38078.t1 MTR_7g097090 51.351 148 66 3 12 156 10 154 4.08e-44 149
MS.gene38078.t1 MTR_5g040420 46.857 175 76 4 5 165 8 179 5.11e-44 152
MS.gene38078.t1 MTR_8g467490 38.430 242 113 6 4 212 7 245 9.61e-44 151
MS.gene38078.t1 MTR_3g093040 47.134 157 71 3 10 158 106 258 2.42e-43 148
MS.gene38078.t1 MTR_3g116070 54.605 152 58 6 2 147 14 160 4.49e-43 148
MS.gene38078.t1 MTR_5g069030 50.318 157 66 3 11 159 24 176 5.36e-43 153
MS.gene38078.t1 MTR_5g014300 47.170 159 76 2 8 158 2 160 1.15e-42 147
MS.gene38078.t1 MTR_3g096920 56.618 136 51 2 8 140 3 133 3.89e-42 145
MS.gene38078.t1 MTR_7g011120 48.235 170 67 5 6 159 2 166 4.18e-42 144
MS.gene38078.t1 MTR_7g011130 45.455 176 69 4 6 159 13 183 4.75e-42 145
MS.gene38078.t1 MTR_3g093050 47.826 161 72 3 12 164 22 178 8.26e-42 149
MS.gene38078.t1 MTR_3g093050 49.032 155 67 3 12 158 22 172 1.14e-41 149
MS.gene38078.t1 MTR_6g011860 47.531 162 67 4 12 158 15 173 1.21e-41 145
MS.gene38078.t1 MTR_3g070040 45.294 170 76 3 6 165 2 164 4.89e-41 142
MS.gene38078.t1 MTR_4g098630 44.767 172 86 3 12 175 6 176 8.34e-41 141
MS.gene38078.t1 MTR_3g096140 47.742 155 63 5 15 158 10 157 4.99e-40 138
MS.gene38078.t1 MTR_3g096140 47.742 155 63 5 15 158 10 157 6.26e-39 137
MS.gene38078.t1 MTR_1g090720 50.617 162 60 4 12 158 42 198 7.47e-39 140
MS.gene38078.t1 MTR_2g086880 43.169 183 83 6 4 175 5 177 6.68e-38 137
MS.gene38078.t1 MTR_2g086880 43.169 183 83 6 4 175 5 177 8.77e-38 138
MS.gene38078.t1 MTR_4g075980 42.941 170 90 4 9 175 13 178 3.63e-37 131
MS.gene38078.t1 MTR_1g090723 47.059 153 68 4 15 158 11 159 8.86e-37 135
MS.gene38078.t1 MTR_0036s0150 47.368 152 68 4 15 158 8 155 1.36e-36 134
MS.gene38078.t1 MTR_1g090723 46.711 152 69 4 15 158 11 158 1.86e-36 134
MS.gene38078.t1 MTR_1g090723 46.711 152 69 4 15 158 11 158 2.68e-36 134
MS.gene38078.t1 MTR_8g063550 44.654 159 72 4 11 159 5 157 6.26e-36 129
MS.gene38078.t1 MTR_4g134460 47.771 157 73 5 9 161 52 203 7.58e-36 131
MS.gene38078.t1 MTR_8g023840 46.667 150 69 5 12 155 11 155 1.34e-35 129
MS.gene38078.t1 MTR_8g063550 44.654 159 72 4 11 159 5 157 1.57e-35 130
MS.gene38078.t1 MTR_1g097300 51.908 131 50 3 15 138 22 146 2.13e-35 131
MS.gene38078.t1 MTR_8g063550 44.654 159 72 4 11 159 5 157 2.46e-35 129
MS.gene38078.t1 MTR_8g093580 43.396 159 74 4 11 159 5 157 1.35e-33 125
MS.gene38078.t1 MTR_4g094302 41.401 157 70 4 12 156 11 157 1.53e-31 114
MS.gene38078.t1 MTR_8g023860 40.789 152 79 5 11 156 11 157 3.57e-31 118
MS.gene38078.t1 MTR_3g096140 44.681 141 60 5 29 158 3 136 2.73e-30 114
MS.gene38078.t1 MTR_4g094302 45.385 130 58 3 12 138 11 130 4.39e-30 109
MS.gene38078.t1 MTR_8g094580 42.138 159 71 6 62 213 6 150 2.87e-29 109
MS.gene38078.t1 MTR_2g086690 40.994 161 75 6 13 157 5 161 4.37e-29 109
MS.gene38078.t1 MTR_8g023930 41.830 153 78 5 12 158 24 171 5.50e-29 113
MS.gene38078.t1 MTR_4g052620 40.625 160 78 6 12 157 5 161 6.79e-29 109
MS.gene38078.t1 MTR_8g023900 41.722 151 77 5 14 158 195 340 5.74e-28 110
MS.gene38078.t1 MTR_8g023900 38.889 162 88 5 12 167 12 168 3.37e-27 108
MS.gene38078.t1 MTR_8g023880 38.298 188 85 8 12 178 7 184 7.11e-28 106
MS.gene38078.t1 MTR_8g093790 39.394 165 73 7 10 171 8 148 2.22e-27 103
MS.gene38078.t1 MTR_7g105170 34.706 170 83 7 12 160 4 166 1.90e-23 94.7
MS.gene38078.t1 MTR_7g083370 31.915 141 87 4 7 143 5 140 1.34e-17 76.6
MS.gene38078.t1 MTR_3g096400 31.515 165 85 6 10 156 5 159 1.84e-17 77.8
MS.gene38078.t1 MTR_7g083360 32.836 134 81 4 7 136 5 133 2.41e-17 76.3
MS.gene38078.t1 MTR_7g083330 32.353 170 104 6 2 166 9 172 1.06e-16 75.5
MS.gene38078.t1 MTR_4g078875 32.886 149 75 7 12 140 48 191 2.07e-13 68.2
MS.gene38078.t1 MTR_7g116460 30.723 166 96 7 18 172 11 168 2.91e-13 66.6
MS.gene38078.t1 MTR_4g088245 28.261 184 103 9 12 176 68 241 4.19e-13 67.4
MS.gene38078.t1 MTR_8g069160 31.757 148 77 7 12 140 68 210 7.72e-13 66.2
MS.gene38078.t1 MTR_2g014680 32.298 161 75 9 4 138 41 193 6.91e-12 63.9
MS.gene38078.t1 MTR_2g090735 27.700 213 110 11 12 199 49 242 1.12e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38078.t1 AT5G13180 71.515 165 41 3 1 161 1 163 1.11e-81 244
MS.gene38078.t1 AT2G33480 70.253 158 42 2 4 160 7 160 8.85e-79 237
MS.gene38078.t1 AT2G33480 69.375 160 42 2 4 160 7 162 1.70e-78 236
MS.gene38078.t1 AT3G04070 51.852 189 70 5 3 177 1 182 3.30e-55 179
MS.gene38078.t1 AT1G69490 57.669 163 54 4 12 164 9 166 8.85e-55 176
MS.gene38078.t1 AT1G61110 57.310 171 48 5 8 158 12 177 5.52e-54 176
MS.gene38078.t1 AT3G04070 48.293 205 69 5 3 177 1 198 4.50e-53 174
MS.gene38078.t1 AT1G77450 51.136 176 69 5 3 168 1 169 7.05e-53 171
MS.gene38078.t1 AT1G33280 53.247 154 62 2 12 159 8 157 3.31e-52 171
MS.gene38078.t1 AT4G10350 47.115 208 72 7 12 210 9 187 5.51e-52 171
MS.gene38078.t1 AT5G39610 50.898 167 70 3 1 159 9 171 8.03e-52 169
MS.gene38078.t1 AT4G27410 52.147 163 68 3 9 165 11 169 2.41e-51 168
MS.gene38078.t1 AT1G65910 53.503 157 61 3 10 158 4 156 5.62e-51 174
MS.gene38078.t1 AT3G15510 56.250 160 51 4 16 158 21 178 5.85e-51 169
MS.gene38078.t1 AT5G61430 52.695 167 67 5 3 161 7 169 2.18e-50 167
MS.gene38078.t1 AT2G24430 53.012 166 69 4 6 166 10 171 3.85e-50 166
MS.gene38078.t1 AT2G24430 53.012 166 69 4 6 166 10 171 3.85e-50 166
MS.gene38078.t1 AT1G79580 50.920 163 69 3 4 159 9 167 1.02e-49 166
MS.gene38078.t1 AT1G79580 50.920 163 69 3 4 159 9 167 1.02e-49 166
MS.gene38078.t1 AT1G79580 50.920 163 69 3 4 159 9 167 1.02e-49 166
MS.gene38078.t1 AT1G79580 50.920 163 69 3 4 159 9 167 1.02e-49 166
MS.gene38078.t1 AT1G79580 50.920 163 69 3 4 159 9 167 1.02e-49 166
MS.gene38078.t1 AT5G17260 51.205 166 68 3 10 166 4 165 1.04e-49 168
MS.gene38078.t1 AT1G12260 49.405 168 74 4 12 172 7 170 1.68e-49 165
MS.gene38078.t1 AT1G62700 49.153 177 79 4 11 180 6 178 2.10e-49 166
MS.gene38078.t1 AT1G62700 49.153 177 79 4 11 180 6 178 2.10e-49 166
MS.gene38078.t1 AT3G03200 49.123 171 74 3 10 171 4 170 2.39e-49 167
MS.gene38078.t1 AT5G07680 52.174 161 65 4 9 161 14 170 2.70e-49 164
MS.gene38078.t1 AT1G52880 52.632 171 59 3 16 172 21 183 3.54e-49 163
MS.gene38078.t1 AT5G07680 53.165 158 62 4 12 161 3 156 4.08e-49 163
MS.gene38078.t1 AT5G62380 51.592 157 65 3 10 159 5 157 6.05e-49 163
MS.gene38078.t1 AT5G62380 51.592 157 65 3 10 159 5 157 6.05e-49 163
MS.gene38078.t1 AT3G18400 52.174 161 68 4 9 164 2 158 6.38e-49 162
MS.gene38078.t1 AT1G12260 49.405 168 74 4 12 172 7 170 7.87e-49 164
MS.gene38078.t1 AT4G27410 47.222 180 68 3 9 165 11 186 1.27e-48 162
MS.gene38078.t1 AT2G18060 48.603 179 78 5 12 183 9 180 1.40e-48 163
MS.gene38078.t1 AT2G18060 48.603 179 78 5 12 183 9 180 1.40e-48 163
MS.gene38078.t1 AT1G01720 44.393 214 100 6 10 213 5 209 1.49e-48 160
MS.gene38078.t1 AT5G66300 51.220 164 68 4 4 159 4 163 1.89e-48 160
MS.gene38078.t1 AT1G76420 52.564 156 65 4 9 158 19 171 2.00e-48 162
MS.gene38078.t1 AT1G54330 53.049 164 64 3 10 166 4 161 2.04e-48 160
MS.gene38078.t1 AT3G04060 52.229 157 64 3 10 158 18 171 2.85e-48 161
MS.gene38078.t1 AT5G18270 52.229 157 64 3 10 158 19 172 3.54e-48 161
MS.gene38078.t1 AT4G36160 47.753 178 76 5 12 180 10 179 4.41e-48 162
MS.gene38078.t1 AT4G36160 47.753 178 76 5 12 180 10 179 4.41e-48 162
MS.gene38078.t1 AT4G36160 47.753 178 76 5 12 180 14 183 4.71e-48 162
MS.gene38078.t1 AT5G63790 48.889 180 75 5 3 171 41 214 5.25e-48 160
MS.gene38078.t1 AT5G63790 48.889 180 75 5 3 171 51 224 7.20e-48 160
MS.gene38078.t1 AT5G18270 52.229 157 64 3 10 158 19 172 7.81e-48 160
MS.gene38078.t1 AT1G33060 53.548 155 60 4 12 158 24 174 1.67e-47 165
MS.gene38078.t1 AT1G33060 53.548 155 60 4 12 158 24 174 1.72e-47 165
MS.gene38078.t1 AT3G17730 50.955 157 65 3 10 158 4 156 1.94e-47 156
MS.gene38078.t1 AT1G52890 50.307 163 71 3 9 165 11 169 4.02e-47 158
MS.gene38078.t1 AT3G15500 48.538 171 78 3 9 173 11 177 8.80e-47 157
MS.gene38078.t1 AT3G15170 49.405 168 74 5 9 168 17 181 1.39e-46 156
MS.gene38078.t1 AT5G08790 51.479 169 63 6 9 165 4 165 2.54e-46 155
MS.gene38078.t1 AT5G46590 45.506 178 85 3 8 176 2 176 5.43e-46 154
MS.gene38078.t1 AT4G35580 45.918 196 86 5 12 199 9 192 7.02e-46 159
MS.gene38078.t1 AT4G35580 45.918 196 86 5 12 199 9 192 7.34e-46 159
MS.gene38078.t1 AT4G35580 45.918 196 86 5 12 199 9 192 7.39e-46 159
MS.gene38078.t1 AT3G29035 48.235 170 76 3 4 165 16 181 1.08e-45 154
MS.gene38078.t1 AT3G12977 44.262 183 89 5 9 182 15 193 1.17e-45 153
MS.gene38078.t1 AT5G53950 52.903 155 63 4 12 158 17 169 1.86e-45 155
MS.gene38078.t1 AT3G10490 51.282 156 63 3 12 158 27 178 3.36e-45 150
MS.gene38078.t1 AT3G10480 51.923 156 62 3 12 158 27 178 3.89e-45 156
MS.gene38078.t1 AT1G71930 48.052 154 69 3 12 158 9 158 5.55e-45 152
MS.gene38078.t1 AT1G71930 48.052 154 69 3 12 158 9 158 5.55e-45 152
MS.gene38078.t1 AT2G33480 65.421 107 30 2 57 160 3 105 1.17e-44 148
MS.gene38078.t1 AT2G46770 44.382 178 73 4 4 159 8 181 1.46e-44 152
MS.gene38078.t1 AT1G56010 45.402 174 81 4 9 172 16 185 1.67e-44 151
MS.gene38078.t1 AT3G61910 41.753 194 86 6 4 175 3 191 2.20e-44 151
MS.gene38078.t1 AT3G10480 51.613 155 63 3 12 158 27 177 5.88e-44 152
MS.gene38078.t1 AT1G32770 44.186 172 73 4 7 159 11 178 1.03e-43 150
MS.gene38078.t1 AT5G39820 43.500 200 75 6 4 176 13 201 1.89e-43 149
MS.gene38078.t1 AT3G10500 50.968 155 64 3 12 158 9 159 2.38e-43 153
MS.gene38078.t1 AT3G10490 51.282 156 63 3 12 158 27 178 2.40e-43 151
MS.gene38078.t1 AT5G04410 51.613 155 63 3 12 158 9 159 3.47e-43 152
MS.gene38078.t1 AT5G46590 48.299 147 68 2 8 149 2 145 2.86e-42 144
MS.gene38078.t1 AT2G17040 44.385 187 83 6 9 178 4 186 4.74e-42 144
MS.gene38078.t1 AT4G17980 46.584 161 74 3 8 158 2 160 5.55e-42 143
MS.gene38078.t1 AT4G17980 46.584 161 74 3 8 158 2 160 7.53e-42 144
MS.gene38078.t1 AT3G12910 47.590 166 66 6 10 156 20 183 4.93e-41 142
MS.gene38078.t1 AT4G28530 47.337 169 67 5 11 160 9 174 1.29e-40 142
MS.gene38078.t1 AT5G24590 46.250 160 67 4 12 159 13 165 2.46e-40 143
MS.gene38078.t1 AT1G26870 46.746 169 72 5 5 158 10 175 2.50e-40 142
MS.gene38078.t1 AT3G10480 42.857 189 62 3 12 158 27 211 3.50e-40 144
MS.gene38078.t1 AT1G32510 40.777 206 103 4 12 198 6 211 4.72e-40 139
MS.gene38078.t1 AT3G49530 44.516 155 75 3 12 158 13 164 6.41e-40 141
MS.gene38078.t1 AT3G49530 44.516 155 75 3 12 158 13 164 9.51e-40 142
MS.gene38078.t1 AT2G43000 39.623 212 108 6 9 213 16 214 5.88e-39 135
MS.gene38078.t1 AT2G02450 48.344 151 70 4 15 161 54 200 3.10e-37 134
MS.gene38078.t1 AT2G02450 48.344 151 70 4 15 161 54 200 4.39e-37 134
MS.gene38078.t1 AT1G34190 45.783 166 75 5 2 158 7 166 9.04e-36 132
MS.gene38078.t1 AT1G34180 50.000 142 61 3 2 138 7 143 1.43e-35 130
MS.gene38078.t1 AT1G34180 50.000 142 61 3 2 138 7 143 3.60e-35 130
MS.gene38078.t1 AT5G64060 44.025 159 77 3 8 158 2 156 7.53e-35 127
MS.gene38078.t1 AT4G10350 45.395 152 51 5 62 210 18 140 1.65e-34 124
MS.gene38078.t1 AT1G34180 46.104 154 61 3 2 138 7 155 1.80e-34 127
MS.gene38078.t1 AT1G34180 46.104 154 61 3 2 138 7 155 3.84e-34 128
MS.gene38078.t1 AT5G09330 41.379 203 102 5 8 201 2 196 4.22e-34 127
MS.gene38078.t1 AT5G09330 41.379 203 102 5 8 201 2 196 4.22e-34 127
MS.gene38078.t1 AT5G09330 41.379 203 102 5 8 201 2 196 4.22e-34 127
MS.gene38078.t1 AT5G09330 41.379 203 102 5 8 201 2 196 4.22e-34 127
MS.gene38078.t1 AT5G09330 41.379 203 102 5 8 201 2 196 4.22e-34 127
MS.gene38078.t1 AT5G04395 42.857 147 67 2 9 139 25 170 1.73e-33 119
MS.gene38078.t1 AT5G22290 41.212 165 80 5 15 175 24 175 2.59e-33 122
MS.gene38078.t1 AT3G44290 42.759 145 71 3 15 155 17 153 1.19e-32 118
MS.gene38078.t1 AT2G27300 42.759 145 71 3 15 155 17 153 2.28e-32 120
MS.gene38078.t1 AT3G44290 42.759 145 71 3 15 155 17 153 1.23e-31 118
MS.gene38078.t1 AT5G14000 37.126 167 97 4 7 170 10 171 2.72e-31 114
MS.gene38078.t1 AT5G61430 53.333 105 40 3 62 161 6 106 4.23e-30 112
MS.gene38078.t1 AT1G02230 40.588 170 87 7 13 175 4 166 4.73e-30 114
MS.gene38078.t1 AT3G12977 46.032 126 58 4 63 182 19 140 6.78e-30 110
MS.gene38078.t1 AT1G56010 48.673 113 48 2 66 172 10 118 7.53e-30 111
MS.gene38078.t1 AT5G14000 39.456 147 82 3 7 150 10 152 1.16e-29 108
MS.gene38078.t1 AT1G02250 42.484 153 76 5 13 158 4 151 1.45e-28 110
MS.gene38078.t1 AT5G64530 36.170 188 88 5 10 178 1 175 4.29e-28 105
MS.gene38078.t1 AT1G32870 48.951 143 60 4 1 138 1 135 4.52e-28 110
MS.gene38078.t1 AT1G32870 48.951 143 60 4 1 138 1 135 4.98e-28 110
MS.gene38078.t1 AT1G32870 48.951 143 60 4 1 138 37 171 6.24e-28 110
MS.gene38078.t1 AT5G50820 38.732 142 82 2 3 144 8 144 3.26e-27 103
MS.gene38078.t1 AT5G64530 43.511 131 59 4 10 138 1 118 8.58e-27 100
MS.gene38078.t1 AT4G01520 38.235 170 93 6 13 175 5 169 2.04e-26 103
MS.gene38078.t1 AT4G01550 37.278 169 96 5 10 171 2 167 6.63e-26 104
MS.gene38078.t1 AT4G01540 38.690 168 91 6 15 175 7 169 7.23e-26 103
MS.gene38078.t1 AT4G01540 38.690 168 91 6 15 175 7 169 9.59e-26 103
MS.gene38078.t1 AT4G01540 38.690 168 91 6 15 175 7 169 1.14e-25 103
MS.gene38078.t1 AT4G01540 38.690 168 91 6 15 175 7 169 1.59e-25 103
MS.gene38078.t1 AT3G04420 38.125 160 84 6 13 165 4 155 1.45e-24 98.6
MS.gene38078.t1 AT3G04420 38.125 160 84 6 13 165 4 155 1.59e-24 99.4
MS.gene38078.t1 AT3G44350 37.500 160 83 5 12 158 5 160 1.64e-24 97.4
MS.gene38078.t1 AT5G22380 36.709 158 81 5 15 157 8 161 2.35e-23 94.0
MS.gene38078.t1 AT3G44350 39.007 141 73 4 12 143 5 141 6.80e-23 90.9
MS.gene38078.t1 AT2G18060 47.959 98 43 3 87 183 2 92 1.62e-22 92.8
MS.gene38078.t1 AT1G02220 38.509 161 65 7 13 157 4 146 7.73e-22 92.8
MS.gene38078.t1 AT3G10490 51.852 81 31 2 82 158 2 78 2.07e-20 88.2
MS.gene38078.t1 AT3G10490 51.852 81 31 2 82 158 2 78 2.07e-20 88.2
MS.gene38078.t1 AT2G43000 36.111 144 76 4 74 213 5 136 2.19e-20 85.5
MS.gene38078.t1 AT4G28530 40.458 131 57 4 11 122 9 137 5.73e-19 84.0
MS.gene38078.t1 AT1G01010 35.443 158 83 6 14 158 5 156 2.59e-17 80.1
MS.gene38078.t1 AT3G55210 32.544 169 80 8 12 157 11 168 4.79e-15 72.4
MS.gene38078.t1 AT5G22290 44.828 87 35 4 88 174 2 75 8.28e-15 71.2
MS.gene38078.t1 AT5G14000 56.604 53 23 0 7 59 10 62 3.12e-14 70.1
MS.gene38078.t1 AT3G56530 33.125 160 88 7 9 157 49 200 5.16e-14 70.1
MS.gene38078.t1 AT1G28470 31.928 166 88 9 12 158 77 236 3.07e-13 67.8
MS.gene38078.t1 AT4G29230 31.250 176 88 9 10 158 45 214 3.13e-13 68.6
MS.gene38078.t1 AT4G29230 31.250 176 88 9 10 158 46 215 3.16e-13 68.6
MS.gene38078.t1 AT4G29230 31.250 176 88 9 10 158 46 215 3.61e-13 68.2
MS.gene38078.t1 AT5G41090 27.329 161 97 4 12 159 8 161 6.56e-13 65.5
MS.gene38078.t1 AT4G28500 30.539 167 90 8 12 158 59 219 1.48e-11 62.8
MS.gene38078.t1 AT5G56620 30.189 159 76 7 10 138 41 194 1.54e-11 63.2
MS.gene38078.t1 AT5G56620 30.189 159 76 7 10 138 41 194 1.84e-11 63.2
MS.gene38078.t1 AT5G56620 30.189 159 76 7 10 138 41 194 2.31e-11 62.8

Find 48 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.236891 5.1:+78011259 MS.gene38078:CDS
CTCCTCAATCACAAATGAAT+TGG 0.308698 5.1:+78011210 MS.gene38078:CDS
CTGTTAGGTCGGTTCCCATT+TGG 0.321045 5.1:-78010780 None:intergenic
AGTTGTTCTATTAGGTGATA+TGG 0.340411 5.1:+78010716 MS.gene38078:intron
GAGCTACAAACTCTGGTTAC+TGG 0.345872 5.1:+78010802 MS.gene38078:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 5.1:+78010503 MS.gene38078:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 5.1:+78010504 MS.gene38078:CDS
CCAGAGTTTGTAGCTCTGTT+AGG 0.395794 5.1:-78010795 None:intergenic
ATCCAATTCATTTGTGATTG+AGG 0.401398 5.1:-78011212 None:intergenic
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5.1:+78010818 MS.gene38078:CDS
TTCATTTGTGATTGAGGAGG+AGG 0.421555 5.1:-78011206 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5.1:-78010408 None:intergenic
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5.1:+78010813 MS.gene38078:CDS
CTCAGCTTCAAGTTCAAAAG+TGG 0.464412 5.1:+78011135 MS.gene38078:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5.1:-78010418 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 5.1:-78010493 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 5.1:-78010485 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.484311 5.1:+78010971 MS.gene38078:CDS
ATAGAAGCGAAATATCCAAA+TGG 0.493277 5.1:+78010765 MS.gene38078:CDS
AAAGGGAAATAGAAGACCTT+AGG 0.494811 5.1:-78010454 None:intergenic
TAGAAGCGAAATATCCAAAT+GGG 0.498616 5.1:+78010766 MS.gene38078:CDS
TGTTCAATATTTGAAGCCTA+AGG 0.506309 5.1:+78010438 MS.gene38078:CDS
AAGATGACTCGTGAAGTTGT+TGG 0.510057 5.1:+78010864 MS.gene38078:CDS
GAATGATGGAAGCAGGTAAA+GGG 0.510410 5.1:-78010471 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 5.1:-78010965 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5.1:-78011268 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5.1:-78011272 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 5.1:-78010472 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 5.1:-78010478 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 5.1:-78010973 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5.1:+78010925 MS.gene38078:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 5.1:-78010982 None:intergenic
TGTGTCGCATATTTCTGAAG+AGG 0.550703 5.1:+78011086 MS.gene38078:CDS
CCTAACAGAGCTACAAACTC+TGG 0.560802 5.1:+78010795 MS.gene38078:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5.1:-78011267 None:intergenic
CAATTCATTTGTGATTGAGG+AGG 0.568174 5.1:-78011209 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 5.1:+78010514 MS.gene38078:CDS
GGATGAAAACGGAAACCTGC+TGG 0.571341 5.1:-78010397 None:intergenic
AGTTTGTAGCTCTGTTAGGT+CGG 0.574980 5.1:-78010791 None:intergenic
TACAGAGGCAAACCACCTCA+TGG 0.581454 5.1:+78010909 MS.gene38078:CDS
GGTGAAGTGAGATTGCCAGC+AGG 0.595430 5.1:+78010382 MS.gene38078:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 5.1:+78011091 MS.gene38078:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5.1:-78010921 None:intergenic
TACAAACTCTGGTTACTGGA+AGG 0.635081 5.1:+78010806 MS.gene38078:CDS
AGCATACCAGGTAAATCCCA+AGG 0.639829 5.1:-78010520 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.694959 5.1:+78010727 MS.gene38078:intron
ATTTCTGAAGAGGAGAGGTG+AGG 0.700060 5.1:+78011096 MS.gene38078:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 5.1:-78010924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATATGAATGAATT+GGG + chr5.1:78011039-78011058 MS.gene38078:intron 10.0%
!! TAATATTAATATGAATGAAT+TGG + chr5.1:78011038-78011057 MS.gene38078:intron 10.0%
!! AAAATAGAAAAGAAAAGAAA+AGG - chr5.1:78010549-78010568 None:intergenic 15.0%
! AAATTCAGAGAAAGAAAGAA+AGG - chr5.1:78011013-78011032 None:intergenic 25.0%
AGTTGTTCTATTAGGTGATA+TGG + chr5.1:78010716-78010735 MS.gene38078:intron 30.0%
ATAGAAGCGAAATATCCAAA+TGG + chr5.1:78010765-78010784 MS.gene38078:CDS 30.0%
ATCCAATTCATTTGTGATTG+AGG - chr5.1:78011215-78011234 None:intergenic 30.0%
TAGAAGCGAAATATCCAAAT+GGG + chr5.1:78010766-78010785 MS.gene38078:CDS 30.0%
TAGTAGAAGTTATCATGTTC+TGG - chr5.1:78010657-78010676 None:intergenic 30.0%
! ATGGATTTTGTGAAGAAGAA+TGG + chr5.1:78010361-78010380 MS.gene38078:CDS 30.0%
! GGTTTTGCAGAATGAAAATT+GGG + chr5.1:78011060-78011079 MS.gene38078:intron 30.0%
! TGTTCAATATTTGAAGCCTA+AGG + chr5.1:78010438-78010457 MS.gene38078:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr5.1:78010894-78010913 MS.gene38078:CDS 30.0%
AAAGGGAAATAGAAGACCTT+AGG - chr5.1:78010457-78010476 None:intergenic 35.0%
AAGAAAGAAAGACTGACCAA+GGG - chr5.1:78010990-78011009 None:intergenic 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr5.1:78010488-78010507 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - chr5.1:78011270-78011289 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr5.1:78010421-78010440 None:intergenic 35.0%
CAATTCATTTGTGATTGAGG+AGG - chr5.1:78011212-78011231 None:intergenic 35.0%
CTCCTCAATCACAAATGAAT+TGG + chr5.1:78011210-78011229 MS.gene38078:CDS 35.0%
CTTCATCTGTTGGATGAAAA+CGG - chr5.1:78010411-78010430 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - chr5.1:78011271-78011290 None:intergenic 35.0%
TGAGTGTGAGTTGTTCTATT+AGG + chr5.1:78010708-78010727 MS.gene38078:intron 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG + chr5.1:78011059-78011078 MS.gene38078:intron 35.0%
AAGATGACTCGTGAAGTTGT+TGG + chr5.1:78010864-78010883 MS.gene38078:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG - chr5.1:78010989-78011008 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr5.1:78010503-78010522 MS.gene38078:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr5.1:78010927-78010946 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr5.1:78010925-78010944 MS.gene38078:CDS 40.0%
GAAGAAAGAAAGACTGACCA+AGG - chr5.1:78010991-78011010 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr5.1:78010496-78010515 None:intergenic 40.0%
TACAAACTCTGGTTACTGGA+AGG + chr5.1:78010806-78010825 MS.gene38078:CDS 40.0%
TACTGCTGAACAATGTCATG+TGG + chr5.1:78010678-78010697 MS.gene38078:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr5.1:78010727-78010746 MS.gene38078:intron 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr5.1:78010504-78010523 MS.gene38078:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG - chr5.1:78011209-78011228 None:intergenic 40.0%
! AAGAAAAGGTACAGCATACC+AGG - chr5.1:78010535-78010554 None:intergenic 40.0%
! AGTTTGTAGCTCTGTTAGGT+CGG - chr5.1:78010794-78010813 None:intergenic 40.0%
! CTCAGCTTCAAGTTCAAAAG+TGG + chr5.1:78011135-78011154 MS.gene38078:CDS 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr5.1:78010474-78010493 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG + chr5.1:78011086-78011105 MS.gene38078:CDS 40.0%
AGCATACCAGGTAAATCCCA+AGG - chr5.1:78010523-78010542 None:intergenic 45.0%
CCTAACAGAGCTACAAACTC+TGG + chr5.1:78010795-78010814 MS.gene38078:CDS 45.0%
CGAAGCATAGACACAGACAT+CGG + chr5.1:78010601-78010620 MS.gene38078:intron 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr5.1:78010802-78010821 MS.gene38078:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr5.1:78010924-78010943 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr5.1:78010514-78010533 MS.gene38078:CDS 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr5.1:78010818-78010837 MS.gene38078:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + chr5.1:78011259-78011278 MS.gene38078:CDS 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr5.1:78010481-78010500 None:intergenic 45.0%
! ATTTCTGAAGAGGAGAGGTG+AGG + chr5.1:78011096-78011115 MS.gene38078:CDS 45.0%
! CCAGAGTTTGTAGCTCTGTT+AGG - chr5.1:78010798-78010817 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr5.1:78011091-78011110 MS.gene38078:CDS 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr5.1:78010475-78010494 None:intergenic 45.0%
AGAAAGACTGACCAAGGGGT+TGG - chr5.1:78010985-78011004 None:intergenic 50.0%
CACAGACATCGGACACAACA+TGG + chr5.1:78010612-78010631 MS.gene38078:intron 50.0%
GGATGAAAACGGAAACCTGC+TGG - chr5.1:78010400-78010419 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr5.1:78010909-78010928 MS.gene38078:CDS 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + chr5.1:78010813-78010832 MS.gene38078:CDS 50.0%
! CTGTTAGGTCGGTTCCCATT+TGG - chr5.1:78010783-78010802 None:intergenic 50.0%
GGTGAAGTGAGATTGCCAGC+AGG + chr5.1:78010382-78010401 MS.gene38078:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr5.1:78010968-78010987 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr5.1:78010971-78010990 MS.gene38078:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr5.1:78010976-78010995 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 78010361 78011291 78010361 ID=MS.gene38078
chr5.1 mRNA 78010361 78011291 78010361 ID=MS.gene38078.t1;Parent=MS.gene38078
chr5.1 exon 78010361 78010535 78010361 ID=MS.gene38078.t1.exon1;Parent=MS.gene38078.t1
chr5.1 CDS 78010361 78010535 78010361 ID=cds.MS.gene38078.t1;Parent=MS.gene38078.t1
chr5.1 exon 78010730 78010992 78010730 ID=MS.gene38078.t1.exon2;Parent=MS.gene38078.t1
chr5.1 CDS 78010730 78010992 78010730 ID=cds.MS.gene38078.t1;Parent=MS.gene38078.t1
chr5.1 exon 78011070 78011291 78011070 ID=MS.gene38078.t1.exon3;Parent=MS.gene38078.t1
chr5.1 CDS 78011070 78011291 78011070 ID=cds.MS.gene38078.t1;Parent=MS.gene38078.t1
Gene Sequence

>MS.gene38078

ATGGATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTCTATTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGCTGTACCTTTTCTTTTCTTTTCTATTTTGTTCATTTATAATCATAACTTAATGAAGCACACGAAGCATAGACACAGACATCGGACACAACATGGACACTGACATGTTCAGACACCAGAACATGATAACTTCTACTACTACTGCTGAACAATGTCATGTGGATTAAATTGAGTGTGAGTTGTTCTATTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTAATATAGAAGCGAAATATCCAAATGGGAACCGACCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAACAAATCATGAATTCTTCGAAGATGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTCTTCCTTTCTTTCTTTCTCTGAATTTGTAATTAATATTAATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTTTGTGTCGCATATTTCTGAAGAGGAGAGGTGAGGTGAAGAAGAAGCAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAAGAAGAAAAATACTGATGCATCCTCCTCCTCAATCACAAATGAATTGGATGAACATGAAAATCAAGACAGCAATAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene38078.t1

MDFVKKNGEVRLPAGFRFHPTDEELVVQYLKPKVFYFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSNIEAKYPNGNRPNRATNSGYWKATGLDKQIMNSSKMTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGEVKKKQNSASSSKVVVFYDFFAEKKKNTDASSSSITNELDEHENQDSNNSLPSSFGNA