AlfalfaGEDB | MS.gene051710

M. sativa cultivar XinJiangDaYe / MS.gene051710

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051710.t1	KEH20239.1	48.3	346	90	9	1	257	1	346	2.90E-64	255.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051710.t1	O49711	37.7	69	38	1	167	230	538	606	2.8e-07	57.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051710.t1	A0A072TRT9	48.3	346	90	9	1	257	1	346	2.1e-64	255.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049701	MS.gene051710	0.823856	1.11E-53	-1.69E-46
MS.gene050221	MS.gene051710	0.808182	3.51E-50	-1.69E-46
MS.gene051198	MS.gene051710	0.801757	7.75E-49	-1.69E-46
MS.gene051710	MS.gene051800	0.801712	7.91E-49	-1.69E-46
MS.gene051710	MS.gene054467	0.807079	6.02E-50	-1.69E-46
MS.gene051710	MS.gene054775	0.817236	3.66E-52	-1.69E-46
MS.gene051710	MS.gene054801	0.861705	8.50E-64	-1.69E-46
MS.gene051710	MS.gene055091	0.802034	6.80E-49	-1.69E-46
MS.gene051710	MS.gene056174	0.809789	1.59E-50	-1.69E-46
MS.gene051710	MS.gene058515	0.84315	1.67E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051710.t1	MTR_4g133410	80.800	125	22	1	139	261	106	230	3.54e-65	204
MS.gene051710.t1	MTR_4g133410	80.800	125	22	1	139	261	106	230	3.41e-64	205
MS.gene051710.t1	MTR_4g133410	80.800	125	22	1	139	261	240	364	4.19e-64	206
MS.gene051710.t1	MTR_4g133410	51.748	143	28	8	1	115	1	130	2.28e-23	98.2
MS.gene051710.t1	MTR_8g070020	79.200	125	24	1	139	261	226	350	1.04e-63	205
MS.gene051710.t1	MTR_8g070020	62.376	101	13	4	1	89	1	88	3.71e-23	97.8
MS.gene051710.t1	MTR_4g133410	80.800	125	22	1	139	261	240	364	3.71e-63	206
MS.gene051710.t1	MTR_4g133410	51.748	143	28	8	1	115	1	130	3.73e-23	98.6
MS.gene051710.t1	MTR_5g034890	83.193	119	19	1	139	257	287	404	9.74e-63	207
MS.gene051710.t1	MTR_4g133410	88.889	72	8	0	139	210	106	177	1.54e-38	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051710.t1	AT4G04790	43.119	109	56	2	140	243	491	598	4.65e-20	89.7
MS.gene051710.t1	AT4G04790	43.119	109	56	2	140	243	487	594	5.30e-20	89.7
MS.gene051710.t1	AT4G04790	43.119	109	56	2	140	243	354	461	1.08e-19	88.6
MS.gene051710.t1	AT4G21880	44.330	97	47	2	140	230	511	606	3.01e-19	87.4
MS.gene051710.t1	AT4G21880	44.330	97	47	2	140	230	467	562	4.05e-19	87.0

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Find 43 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCAGTGGTGGGTTA+AGG	0.344761	7.3:+49530339	MS.gene051710:CDS
AAACATCAGTGGTGGGTTAA+GGG	0.424857	7.3:+49530340	MS.gene051710:CDS
AACCTGTGGAAGAAGCATCA+TGG	0.580756	7.3:-49526988	None:intergenic
AAGAAGCATCATGGAGTTTG+CGG	0.521355	7.3:-49526979	None:intergenic
AAGGCTGCAGTTGAAATCTG+AGG	0.656330	7.3:+49527300	MS.gene051710:CDS
AAGTTGGATATGCATGAATC+AGG	0.385598	7.3:-49530919	None:intergenic
AATTTCCTCACCTCAAAACT+TGG	0.407050	7.3:-49527486	None:intergenic
ACAATTGTGGATTTCTAGAG+CGG	0.602704	7.3:+49527180	MS.gene051710:CDS
ACATCAAATTCACCGCAAGT+TGG	0.541945	7.3:-49530935	None:intergenic
ACGGTTGCCTCTGGGCCATC+CGG	0.483450	7.3:+49531210	MS.gene051710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATGTACAATGTCATTA+TGG	+	chr7.3:49530146-49530165	MS.gene051710:intron	30.0%
AATTCTGCATTGTTCTTCAA+AGG	-	chr7.3:49528983-49529002	None:intergenic	30.0%
ACCTCTAAATAATTCCAAAC+AGG	-	chr7.3:49529577-49529596	None:intergenic	30.0%
ACGTAAAACAACTTCTTGTT+AGG	+	chr7.3:49528211-49528230	MS.gene051710:intron	30.0%
ATCAATACAAGGAACAAACT+TGG	-	chr7.3:49527378-49527397	None:intergenic	30.0%
ATGTAATGCAGATTATGATG+TGG	+	chr7.3:49527422-49527441	MS.gene051710:intron	30.0%
CAGAAACTGATCAACATAAT+TGG	+	chr7.3:49528174-49528193	MS.gene051710:intron	30.0%
CAGTAAATTTCACAAACAGT+TGG	-	chr7.3:49527043-49527062	None:intergenic	30.0%
CAGTTATGCATGTGTAAAAA+TGG	-	chr7.3:49529054-49529073	None:intergenic	30.0%
CATACAATTTGTCAAAAGAG+TGG	+	chr7.3:49528953-49528972	MS.gene051710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	49526905	49531541	49526905	ID=MS.gene051710
chr7.3	mRNA	49526905	49531541	49526905	ID=MS.gene051710.t1;Parent=MS.gene051710
chr7.3	exon	49526905	49527007	49526905	ID=MS.gene051710.t1.exon1;Parent=MS.gene051710.t1
chr7.3	CDS	49526905	49527007	49526905	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1
chr7.3	exon	49527104	49527355	49527104	ID=MS.gene051710.t1.exon2;Parent=MS.gene051710.t1
chr7.3	CDS	49527104	49527355	49527104	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1
chr7.3	exon	49527433	49527497	49527433	ID=MS.gene051710.t1.exon3;Parent=MS.gene051710.t1
chr7.3	CDS	49527433	49527497	49527433	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1
chr7.3	exon	49530338	49530457	49530338	ID=MS.gene051710.t1.exon4;Parent=MS.gene051710.t1
chr7.3	CDS	49530338	49530457	49530338	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1
chr7.3	exon	49530863	49530967	49530863	ID=MS.gene051710.t1.exon5;Parent=MS.gene051710.t1
chr7.3	CDS	49530863	49530967	49530863	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1
chr7.3	exon	49531131	49531258	49531131	ID=MS.gene051710.t1.exon6;Parent=MS.gene051710.t1
chr7.3	CDS	49531131	49531258	49531131	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1
chr7.3	exon	49531529	49531541	49531529	ID=MS.gene051710.t1.exon7;Parent=MS.gene051710.t1
chr7.3	CDS	49531529	49531541	49531529	ID=cds.MS.gene051710.t1;Parent=MS.gene051710.t1

Gene Sequence

>MS.gene051710

ATGCGCGCCTTTTGCCTAAAAAAACTAGAAAACTTTCGCAGAACATCATCTTCATGGAACCTGATTCTCTCATCCCGCAAACTCCATGATGCTTCTTCCACAGGTTTCTATCTCAGTTTTCTTCTATATTGAACACCAACTGTTTGTGAAATTTACTGTTAAACTCAATTCAAATGTTTGTTTTCTTTTTTCTTTTCAGTAGCTCCTCCTGTTGAGAAGCTTAAGCTTCTTGACTACGCTTCAACAAGACTAAAGGAACTAACAATTGAGAGGAAACAATTGTGGATTTCTAGAGCGGATACGCAACAACTTTGTGAAAGTGACAGCAAGGCACATATTTCGGATATGTTGAAAAATATAGACAGAGATATATCAAATATATTCGAATCATCAGAAAGGCTGCAGTTGAAATCTGAGGCAGAGAAGCTATTATTTTATTTTAGATCATACGGTACCATTATTATGTTATTCCAAGTTTGTTCCTTGTATTGATATTATTATCAATGACATATTCTTTATGTAATGCAGATTATGATGTGGATGATATTTCCAACTTCATTGCTAGTTATGCATTTAGCATTCCAAGTTTTGAGGTGAGGAAATTATCGTAAACAAAATACCCTTGATGATATGCAAGGCAGTTATGCTTATCTACAATTTTCAATCAATTTTACAAAATTCAAAAACAAAATTGACCATATCCCATCATACAACAAGTTTTGCAGTGTATGCATTTAAAACATTTTATTGCCCATTTTGACTGCCGGCCAGAAACCGATGCGAAAGACATAATTTTTTCCTTACAATAGTTGTATGTTACAATTTTTTTTTCTTAGCTAGCAATCTTCTTATATGGTTTGTTGGTAATTTGAAGGTTGAGCATGTCATAGGAAGGATCGAGAATTTGCATGGTGTGTTGGAAATTTTGCCCGCGTCCTCTATGTATGAAAAGCTAATTTTGTATTGTTGTGGCAAGGACATGGTATTATTTTCTCCTTTGTTCATTCTCATACTACGGTTATCAAATAAATATAATTGTCTTAAAGTCATCCATGAGAAGGAAAACGATAACAAGACGTTTGCTCCCTTCATTTCAAATTCTCTCTTCATTCTATTTTCTGTTACCATCATTTGTCAAAACTGCATTTCATTTTTCTTTTTCACTTATGCTTATGTAGGTGGAAGTAGCTATTAATGTTGTTGATAAAATGTGTGTATCAGGCTTTACACTCTCTAGTCATGTAATGCAATCTGTATTAGAGACTTGCTCAGAAACTGATCAACATAATTGGGTACTATATATCTTACGTAAAACAACTTCTTGTTAGGACTTAAGCCCATGAGGAGAGCCCAACCCAAAAGACTCGTCCAATAGGTGGGAGAGCCTCATGGCTTAAGTACCACATCAAGCACTTTTAGCTACCCGATGTGGGACTCCTAACACTTCCATGTTTTTCTTCTTCTTCTTTGAATTATATTATAATCCATTTCTTCAAACAATATGTTGTGTTCGATGAGTGGTACAAGACTAGACGAGATAGGATTAGGAATGACACCATTAGAGAGAGGGAGTTGGGGTAGCACCTATAGTAGAAAAGATGGTAGAAAATAGGCTAAGGTGGTTTGGACATGTTGAGAAAAGACCTGATCAGACGGAGGAGAGTGAGATTAGAAGAGGTAGAGGATGACCTAGAAAAACTATTAGATAAACTGTTTGGAAGAGCAATGCTATTGTCAGGCGCTACAACACTCTCCTTTAGCCACCCTCTCTTTGATTGGGCCATGTCATACATGTTTTAAAAAATATTTTTGGCTACCGGTTCTAAACCTGCACAATAGTATATTTTTATTTATTTTATTTTTACTGTTGATTTCATGGCCATTGAAGGGTCGTCTTTCCCATCTAACAACAACTTTCCTAATTATTGAAGAGAAAGAAGTGAAATACGATTATAGCATTCTCATTTTGAGTCTCAATTAAAAAACAATGTTATAATTGTTCTTTCTATTGCTAATATTGCAAGAAATAAAGCCATAGTGGGAATCGACATACAATTTGTCAAAAGAGTGGTTTACCTTTGAAGAACAATGCAGAATTGTCAAATCAAATAATTAGAGTACAAAGATTATCCAGGAAACAAAGAACCCATTTTTACACATGCATAACTGGACTTTGAAACTTGCTAAAAATTAAAAGCAAATTTCAGATAAATGTGGGTTTTAATTTGCAGATGAGATGAGATGGAGAGAAAGAAAAAAATTCAAAAAATCAAAGAACCCAGTAAACAAAGAACCTGTTTTTCAACAAAGAACCCAGATGAGATGCGATTGTTGTGTTTGTGTTTGACATTGTTTTGGCCTCAGAAGTTAGATTTGATACATAACAGTCATGGAGATTTTTTTCCCCTGAGAGGAACAGTCACGAAGCTTGCTACCTGCTATTTTTTTTTTTGAGATGATATTTTTTTTATTTCTTGTTGAGATGAGATCTTTTTTTTTTCTTTCATGCGTGTGTTTTTTATTTTATTTTAGGTTGAATAAAAAAAATGGTGTGAGTAAACCAGCATAGCCGGTTAGCAGGTAGTTGGTTTTAAAAAATTGATGATGTGGACCAATAATTGAGGGAGTGTTTGAGAGAGAGTGTAAAAGCAACTGCAGCTAGCATTCCTCCTGTTTGGAATTATTTAGAGGTTAATGAGTTGGATCCAAATATGGTTTATGATAGAAGGGGTTCCACCATTTGGAGGACTTCAACTTGTGACCTTTTAGTCACACTCGTGACCTTTCTTTCACTCACGTGACAACAACTTTACCGGTGCTCCAAGGCTCACCCTTAAACTTTTACAATTACATAATGAAATTTATGATTCCTTTTTTCACCTTAATTGAAGCATTGATTCTTGTTTGTCTTGTTTTACTAATATATGTTTGTTCATTTTCTATTCCTTTTTCTATATTGAAAATCAAGGTTTTTGAAATCTATTCCATCATAAGTCGCCATCCCCACCATTTCGAGTTAAATGAAAAAATTTGCAGGCTTTTGGTACACTTCTGTGTAGTGATGAAAGATGTAAGTTTTACCTTTTTTTTTTATTTCTTAATGTATGCTTGTTTTCTACAATGGTATCTTTTGAAGGAATACTTTTTACTAACCAGATAATGTATTTACTTTCATTATGCAGTTTGAATGTGCGTCCAAGATGGTTAATGAATTGCAAAAAAAGTATTTCAAATACAAAACAACCATGTACAATGTCATTATGGCAGGATATTTTTTTTGAGGTATCATTGTTGGATTTTGCTCTCACTCAGATTTTCAACAACGAAAACTTCTATCTCTTAATGATTTCATTCATTAAAAAAATATTTAAATGAGTGTATGAAACATATTTAAAATAGTTCTTTCATATTCTCACTTTTTTCGATATTGTAGAAAAACATCAGTGGTGGGTTAAGGGTTCTCAAACAAATGCGAGATGCCAACGTAAAGCTCGATTCATACACTTTCAGCTATTTGATTGGCAATTGTGAAACAAAAGAAGAGATTAAAAAAGTAAGTTGAGTTTAATAATTTCATATATTCAAGTTTGGGGGCCTTTGAGCGCGGTTTTTGGTCTGATTCCTGATTTCATGTGTCTTATCTCTATGGTGGAGTTGGCTTGGTCCATTCTTCCTTTGTTTTGGGCACCATGAGGGAGGGAAATTTCTTGTGTTGTTGTTTTTGTGAAGGTGTTGGTTTTTTAGTTCCCCCTAGTAGTGTTCCAGGTGTTCTTTTTATGTTATTGTTGGGTTTTTTTTTTCCTTGGGCCACCTTTGGTGTGCTTATTCTCTTTTTATATTCGTTATCCATTTCTTGTACATATAATTTCCTTTCCAAAAAAAAAAATACATATATTCACATACCTTGTATATTTGATTTTTCAATAATCGAATTGCTAATTAGAATATTTACATGTAGTATTATGAAGATATGGAACAATCTGGTATCCACTTGACAAAAGAAGTTTTTGTAGCCCTGATTCATGCATATCCAACTTGCGGTGAATTTGATGTTAAAAAACAGGTATGTTTGTGTAAATATGTTGTCTTTCTACAGTTTCTCTTTTGGGGTGACCTTGTAAAGGACATGGCATATTGTCAGTCTCATGGTAGGGTTTTAGATTATTATTAATTTATATACCTTCCATTTTCAACCTTAAAACTCATCAATCATTGTACATTCTTAGGATGTGTTATGTAATTTACATGGCGAGTTGGAGAGGTTGCTTCTCCTACTTAAGGAGTTGAGTGGTCAAGATTGGGTTGACGGTTGCCTCTGGGCCATCCGGTATTCAGTTAAACACAAAAATTTAAGGTATGACGGTTCTTTATTCCCAATATTAAATTATGATTTTATTCTGCCATTTGTTTATGTTCATTGTATATTTTGGAGTTCTACCATTCAACTGTTTAAACAACTCGAGGATTATTTCAAAAGTCACAAATGCAAGAGAGATATGCTTTTTGATAAGGTAGTTTTTGTTTCCTTATGACTTGAATAATGATTCACAATTATAAGAATTAAATTTTGGTTTAATATTTATGCGTGTATGAAGCATGACATATTGGTCTCATGTATGTATAGGCGTATTGTCTAA

Protein sequence

>MS.gene051710.t1

MRAFCLKKLENFRRTSSSWNLILSSRKLHDASSTVAPPVEKLKLLDYASTRLKELTIERKQLWISRADTQQLCESDSKAHISDMLKNIDRDISNIFESSERLQLKSEAEKLLFYFRSYDYDVDDISNFIASYAFSIPSFEKNISGGLRVLKQMRDANVKLDSYTFSYLIGNCETKEEIKKYYEDMEQSGIHLTKEVFVALIHAYPTCGEFDVKKQDVLCNLHGELERLLLLLKELSGQDWVDGCLWAIRYSVKHKNLRRIV