Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38268.t1 | XP_003617863.2 | 99.5 | 385 | 2 | 0 | 1 | 385 | 1 | 385 | 1.30E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38268.t1 | Q9FG70 | 79.9 | 373 | 72 | 2 | 1 | 370 | 1 | 373 | 7.7e-163 | 574.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38268.t1 | G7KEK1 | 99.5 | 385 | 2 | 0 | 1 | 385 | 1 | 385 | 9.6e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050376 | MS.gene38268 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene38268 | 0.809208 | 2.12E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene38268 | 0.802239 | 6.16E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene38268 | 0.807436 | 5.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38268.t1 | MTR_5g096310 | 99.481 | 385 | 2 | 0 | 1 | 385 | 1 | 385 | 0.0 | 773 |
| MS.gene38268.t1 | MTR_2g038410 | 60.963 | 374 | 142 | 3 | 3 | 373 | 1 | 373 | 2.86e-168 | 475 |
| MS.gene38268.t1 | MTR_2g094640 | 29.683 | 347 | 216 | 5 | 55 | 380 | 10 | 349 | 4.71e-40 | 145 |
| MS.gene38268.t1 | MTR_3g094270 | 28.213 | 319 | 210 | 4 | 73 | 385 | 28 | 333 | 4.02e-38 | 140 |
| MS.gene38268.t1 | MTR_4g058860 | 27.485 | 342 | 219 | 3 | 55 | 371 | 10 | 347 | 3.32e-37 | 138 |
| MS.gene38268.t1 | MTR_3g094260 | 28.339 | 307 | 201 | 4 | 73 | 373 | 28 | 321 | 5.68e-33 | 126 |
| MS.gene38268.t1 | MTR_3g095130 | 28.939 | 311 | 204 | 7 | 62 | 365 | 20 | 320 | 1.94e-28 | 114 |
| MS.gene38268.t1 | MTR_1g026590 | 32.602 | 319 | 202 | 5 | 59 | 369 | 15 | 328 | 4.61e-28 | 113 |
| MS.gene38268.t1 | MTR_5g004620 | 31.833 | 311 | 200 | 6 | 63 | 365 | 21 | 327 | 6.68e-28 | 112 |
| MS.gene38268.t1 | MTR_1g098240 | 27.393 | 303 | 201 | 4 | 46 | 338 | 4 | 297 | 1.53e-25 | 105 |
| MS.gene38268.t1 | MTR_8g092190 | 27.134 | 328 | 216 | 5 | 62 | 375 | 20 | 338 | 1.50e-22 | 97.8 |
| MS.gene38268.t1 | MTR_3g095130 | 27.046 | 281 | 188 | 7 | 92 | 365 | 1 | 271 | 5.39e-20 | 89.4 |
| MS.gene38268.t1 | MTR_3g072380 | 23.585 | 318 | 224 | 5 | 68 | 373 | 27 | 337 | 1.67e-18 | 86.3 |
| MS.gene38268.t1 | MTR_1g030320 | 22.222 | 324 | 233 | 5 | 68 | 383 | 26 | 338 | 5.20e-17 | 81.6 |
| MS.gene38268.t1 | MTR_8g090130 | 29.758 | 289 | 174 | 9 | 68 | 338 | 24 | 301 | 4.25e-13 | 69.7 |
| MS.gene38268.t1 | MTR_2g070400 | 25.786 | 318 | 205 | 13 | 69 | 366 | 24 | 330 | 4.62e-13 | 70.1 |
| MS.gene38268.t1 | MTR_4g101860 | 26.241 | 282 | 195 | 7 | 68 | 339 | 65 | 343 | 6.43e-13 | 69.7 |
| MS.gene38268.t1 | MTR_3g072380 | 26.282 | 156 | 108 | 2 | 68 | 219 | 27 | 179 | 1.08e-12 | 67.8 |
| MS.gene38268.t1 | MTR_3g070000 | 25.850 | 294 | 198 | 10 | 68 | 350 | 37 | 321 | 1.21e-11 | 65.5 |
| MS.gene38268.t1 | MTR_0011s0320 | 25.070 | 355 | 218 | 14 | 40 | 372 | 1 | 329 | 2.88e-11 | 64.7 |
| MS.gene38268.t1 | MTR_7g110380 | 24.606 | 317 | 216 | 9 | 69 | 371 | 28 | 335 | 3.52e-11 | 64.7 |
| MS.gene38268.t1 | MTR_4g018760 | 27.682 | 289 | 182 | 11 | 68 | 339 | 25 | 303 | 5.02e-11 | 63.5 |
| MS.gene38268.t1 | MTR_3g462070 | 25.773 | 291 | 199 | 9 | 60 | 338 | 14 | 299 | 6.37e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38268.t1 | AT5G55950 | 79.893 | 373 | 72 | 2 | 1 | 370 | 1 | 373 | 0.0 | 608 |
| MS.gene38268.t1 | AT5G55950 | 85.911 | 291 | 40 | 1 | 1 | 290 | 1 | 291 | 0.0 | 514 |
| MS.gene38268.t1 | AT5G55950 | 78.914 | 313 | 64 | 1 | 60 | 370 | 1 | 313 | 8.90e-178 | 498 |
| MS.gene38268.t1 | AT5G55950 | 78.644 | 295 | 61 | 1 | 78 | 370 | 1 | 295 | 1.41e-166 | 469 |
| MS.gene38268.t1 | AT5G57100 | 64.897 | 339 | 116 | 1 | 7 | 342 | 12 | 350 | 9.10e-162 | 459 |
| MS.gene38268.t1 | AT5G57100 | 64.808 | 287 | 98 | 1 | 7 | 290 | 12 | 298 | 5.86e-136 | 390 |
| MS.gene38268.t1 | AT5G57100 | 63.043 | 230 | 82 | 1 | 7 | 233 | 12 | 241 | 1.80e-102 | 304 |
| MS.gene38268.t1 | AT5G57100 | 62.996 | 227 | 84 | 0 | 147 | 373 | 40 | 266 | 3.45e-95 | 286 |
| MS.gene38268.t1 | AT2G30460 | 32.432 | 333 | 185 | 8 | 73 | 374 | 28 | 351 | 4.71e-42 | 151 |
| MS.gene38268.t1 | AT2G30460 | 32.432 | 333 | 185 | 8 | 73 | 374 | 28 | 351 | 4.71e-42 | 151 |
| MS.gene38268.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 2.60e-41 | 149 |
| MS.gene38268.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 3.24e-41 | 149 |
| MS.gene38268.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 5.14e-41 | 148 |
| MS.gene38268.t1 | AT1G06890 | 32.456 | 342 | 202 | 9 | 43 | 370 | 2 | 328 | 5.14e-41 | 148 |
| MS.gene38268.t1 | AT2G30460 | 32.797 | 311 | 175 | 7 | 95 | 374 | 23 | 330 | 1.16e-40 | 147 |
| MS.gene38268.t1 | AT2G30460 | 32.797 | 311 | 175 | 7 | 95 | 374 | 23 | 330 | 1.16e-40 | 147 |
| MS.gene38268.t1 | AT2G30460 | 32.797 | 311 | 175 | 7 | 95 | 374 | 23 | 330 | 1.16e-40 | 147 |
| MS.gene38268.t1 | AT2G28315 | 30.363 | 303 | 200 | 3 | 55 | 353 | 10 | 305 | 1.83e-35 | 133 |
| MS.gene38268.t1 | AT2G28315 | 30.032 | 313 | 206 | 4 | 45 | 353 | 2 | 305 | 7.00e-35 | 131 |
| MS.gene38268.t1 | AT5G42420 | 33.013 | 312 | 200 | 4 | 59 | 363 | 18 | 327 | 2.12e-31 | 122 |
| MS.gene38268.t1 | AT1G21070 | 30.448 | 335 | 217 | 6 | 59 | 382 | 18 | 347 | 9.96e-31 | 120 |
| MS.gene38268.t1 | AT4G09810 | 27.003 | 337 | 228 | 7 | 47 | 373 | 5 | 333 | 9.07e-30 | 117 |
| MS.gene38268.t1 | AT1G76670 | 29.598 | 348 | 231 | 5 | 44 | 380 | 2 | 346 | 4.42e-29 | 116 |
| MS.gene38268.t1 | AT1G76670 | 29.598 | 348 | 231 | 5 | 44 | 380 | 2 | 346 | 4.42e-29 | 116 |
| MS.gene38268.t1 | AT1G34020 | 27.019 | 322 | 217 | 7 | 62 | 373 | 20 | 333 | 2.49e-28 | 114 |
| MS.gene38268.t1 | AT1G34020 | 27.019 | 322 | 217 | 7 | 62 | 373 | 20 | 333 | 2.49e-28 | 114 |
| MS.gene38268.t1 | AT1G34020 | 27.019 | 322 | 217 | 7 | 62 | 373 | 20 | 333 | 2.49e-28 | 114 |
| MS.gene38268.t1 | AT2G30460 | 32.000 | 200 | 118 | 5 | 73 | 263 | 28 | 218 | 5.16e-24 | 102 |
| MS.gene38268.t1 | AT4G39390 | 26.627 | 338 | 235 | 6 | 41 | 373 | 4 | 333 | 3.12e-22 | 96.7 |
| MS.gene38268.t1 | AT4G39390 | 26.627 | 338 | 235 | 6 | 41 | 373 | 4 | 333 | 3.12e-22 | 96.7 |
| MS.gene38268.t1 | AT4G39390 | 26.786 | 336 | 233 | 6 | 43 | 373 | 2 | 329 | 5.12e-22 | 96.3 |
| MS.gene38268.t1 | AT4G09810 | 26.715 | 277 | 188 | 6 | 107 | 373 | 5 | 276 | 5.68e-21 | 92.0 |
| MS.gene38268.t1 | AT1G77610 | 24.458 | 323 | 223 | 5 | 68 | 382 | 21 | 330 | 1.37e-20 | 92.0 |
| MS.gene38268.t1 | AT1G21870 | 23.457 | 324 | 227 | 5 | 68 | 383 | 27 | 337 | 2.06e-19 | 89.0 |
| MS.gene38268.t1 | AT4G09810 | 28.846 | 208 | 144 | 2 | 47 | 254 | 5 | 208 | 4.06e-19 | 85.9 |
| MS.gene38268.t1 | AT1G53660 | 28.115 | 313 | 196 | 13 | 69 | 366 | 48 | 346 | 5.43e-14 | 72.8 |
| MS.gene38268.t1 | AT1G53660 | 28.115 | 313 | 196 | 13 | 69 | 366 | 30 | 328 | 6.41e-14 | 72.4 |
| MS.gene38268.t1 | AT1G53660 | 27.667 | 300 | 190 | 12 | 80 | 366 | 9 | 294 | 2.39e-13 | 70.5 |
| MS.gene38268.t1 | AT3G14410 | 28.076 | 317 | 196 | 14 | 69 | 364 | 28 | 333 | 2.23e-12 | 68.2 |
| MS.gene38268.t1 | AT5G25400 | 24.534 | 322 | 214 | 11 | 70 | 372 | 32 | 343 | 2.58e-12 | 67.8 |
| MS.gene38268.t1 | AT1G12500 | 26.241 | 282 | 195 | 7 | 68 | 339 | 71 | 349 | 4.42e-12 | 67.4 |
| MS.gene38268.t1 | AT3G17430 | 26.549 | 339 | 200 | 16 | 69 | 378 | 25 | 343 | 3.90e-11 | 64.3 |
| MS.gene38268.t1 | AT3G17430 | 26.549 | 339 | 200 | 16 | 69 | 378 | 25 | 343 | 3.90e-11 | 64.3 |
| MS.gene38268.t1 | AT3G10290 | 26.690 | 281 | 193 | 7 | 68 | 338 | 70 | 347 | 8.69e-11 | 63.2 |
| MS.gene38268.t1 | AT3G11320 | 27.562 | 283 | 190 | 9 | 68 | 339 | 23 | 301 | 9.94e-11 | 62.8 |
Find 78 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATAGTTGCAATTATA+TGG | 0.196565 | 5.3:-77836255 | MS.gene38268:CDS |
| TGAACAAATGTGAGGAAAAT+TGG | 0.206523 | 5.3:+77837332 | None:intergenic |
| GATTTAGAGTTCAATTTATT+TGG | 0.233562 | 5.3:-77836277 | MS.gene38268:CDS |
| CGCATTATCCTTCAACTTCA+TGG | 0.275264 | 5.3:-77837528 | MS.gene38268:CDS |
| TTCTAGGAGCTTTGATGCCT+TGG | 0.276040 | 5.3:-77836043 | MS.gene38268:CDS |
| TGGTCAGGTGCCTTGGCATT+AGG | 0.292303 | 5.3:-77835930 | MS.gene38268:CDS |
| ATTTGCACTTGGTGCTGTTA+TGG | 0.295321 | 5.3:-77837216 | MS.gene38268:CDS |
| TTACATCCCACTTGAATGAT+AGG | 0.344646 | 5.3:+77836003 | None:intergenic |
| CTTGGTTGTTATGGGATTGT+TGG | 0.362653 | 5.3:-77838246 | None:intergenic |
| GACAGTGATGCAGGAGAAAC+AGG | 0.365115 | 5.3:-77838182 | MS.gene38268:intron |
| GGTCAGGTGCCTTGGCATTA+GGG | 0.373196 | 5.3:-77835929 | MS.gene38268:intron |
| GATCATCATGGCAAACAAAT+TGG | 0.383428 | 5.3:-77837495 | MS.gene38268:intron |
| GTCCGCAATATCTTTGTTGT+TGG | 0.384372 | 5.3:+77837558 | None:intergenic |
| GAACAAATGTGAGGAAAATT+GGG | 0.386839 | 5.3:+77837333 | None:intergenic |
| AAGACCTGTGTTATTCTGTT+GGG | 0.387128 | 5.3:-77835728 | MS.gene38268:CDS |
| ATTTACAGCAGCAAGGAAAC+TGG | 0.392992 | 5.3:-77836195 | MS.gene38268:CDS |
| TGTTACTCCAACAATTGTTC+TGG | 0.395251 | 5.3:-77836524 | MS.gene38268:CDS |
| ATATCTTTGTTGTTGGCGCT+TGG | 0.395651 | 5.3:+77837565 | None:intergenic |
| TTCAACTTCATGGTTGCTGT+TGG | 0.397088 | 5.3:-77837518 | MS.gene38268:CDS |
| TCAACTTCATGGTTGCTGTT+GGG | 0.398882 | 5.3:-77837517 | MS.gene38268:CDS |
| CTGTTATTCGACTCAGATCC+GGG | 0.403312 | 5.3:-77835698 | MS.gene38268:CDS |
| GCTTGGCTCCTTCCGAGGTT+CGG | 0.411178 | 5.3:+77837582 | None:intergenic |
| CCTAGAAAGAAAACTGTGAT+AGG | 0.412694 | 5.3:+77836059 | None:intergenic |
| TCAGACAACAATGTTATTGT+TGG | 0.416058 | 5.3:+77835502 | None:intergenic |
| ACACCAGCCTCAAGTATAAC+AGG | 0.419149 | 5.3:-77837172 | MS.gene38268:intron |
| TAACAGCAATCTTAGCCATT+TGG | 0.422409 | 5.3:+77836542 | None:intergenic |
| AACTCTGCCAGAACAATTGT+TGG | 0.424008 | 5.3:+77836517 | None:intergenic |
| CTTACAGTGGTCAGGTGCCT+TGG | 0.424187 | 5.3:-77835937 | MS.gene38268:CDS |
| TCTTTGTTGTCTTCACTAGC+TGG | 0.443142 | 5.3:+77835542 | None:intergenic |
| CAGTGTTGGTTTCTACCAAA+TGG | 0.447856 | 5.3:-77836557 | MS.gene38268:CDS |
| GCTTTGGCTGCTGTATCAGC+TGG | 0.447867 | 5.3:-77836322 | MS.gene38268:CDS |
| TTCTCTTCTATATTTGCACT+TGG | 0.450424 | 5.3:-77837227 | MS.gene38268:CDS |
| CCGGGGATTGTGAGCATTGG+CGG | 0.454725 | 5.3:-77835680 | MS.gene38268:CDS |
| GCAAGGAAACTGGACAGCTT+TGG | 0.461956 | 5.3:-77836185 | MS.gene38268:CDS |
| GGGATTGTTGGATTCACTGT+TGG | 0.464531 | 5.3:-77838234 | MS.gene38268:CDS |
| TCTGTTATTCGACTCAGATC+CGG | 0.468414 | 5.3:-77835699 | MS.gene38268:CDS |
| GGAGCGGTTGTTGCTCTCAC+TGG | 0.471179 | 5.3:-77835659 | MS.gene38268:CDS |
| GGATTGTTGGATTCACTGTT+GGG | 0.478433 | 5.3:-77838233 | MS.gene38268:CDS |
| TAAGACCTGTGTTATTCTGT+TGG | 0.483155 | 5.3:-77835729 | MS.gene38268:CDS |
| TGTTGCTCTCACTGGAATGT+CGG | 0.489922 | 5.3:-77835651 | MS.gene38268:CDS |
| CCGCCAATGCTCACAATCCC+CGG | 0.490390 | 5.3:+77835680 | None:intergenic |
| AAAAGAAAAGACAGTGATGC+AGG | 0.490754 | 5.3:-77838191 | MS.gene38268:CDS |
| CACTTGAATGATAGGACTCC+TGG | 0.491316 | 5.3:+77836011 | None:intergenic |
| AGTGCAAATATAGAAGAGAA+TGG | 0.515498 | 5.3:+77837230 | None:intergenic |
| AACAGCAACCATGAAGTTGA+AGG | 0.516911 | 5.3:+77837520 | None:intergenic |
| GTTGAAGGCAAACTATGCTT+CGG | 0.526876 | 5.3:+77835575 | None:intergenic |
| TTGGATTCACTGTTGGGAGA+TGG | 0.530762 | 5.3:-77838227 | MS.gene38268:CDS |
| TTGGCGCTTGGCTCCTTCCG+AGG | 0.534697 | 5.3:+77837577 | None:intergenic |
| GATCCGGGGATTGTGAGCAT+TGG | 0.537864 | 5.3:-77835683 | MS.gene38268:CDS |
| GAAATTATCAGGTAAAGCAC+TGG | 0.545102 | 5.3:-77837636 | MS.gene38268:intron |
| CTTTATTGTTGATAGGTGAT+GGG | 0.545367 | 5.3:-77837374 | MS.gene38268:intron |
| TGATAGGTGATGGGAAGAGT+TGG | 0.547749 | 5.3:-77837365 | MS.gene38268:intron |
| TTTCTCATTGTAGATTGATG+TGG | 0.552469 | 5.3:-77836091 | MS.gene38268:intron |
| ACCTGTGTTATTCTGTTGGG+AGG | 0.560653 | 5.3:-77835725 | MS.gene38268:CDS |
| AATGAGCTCCGAACCTCGGA+AGG | 0.566484 | 5.3:-77837590 | MS.gene38268:CDS |
| TTGTTCACTACATCACTGCA+TGG | 0.573296 | 5.3:-77837316 | MS.gene38268:CDS |
| AACAATAACATTGTTGTCTG+AGG | 0.579088 | 5.3:-77835500 | None:intergenic |
| TGGTCTAATTTACAGCAGCA+AGG | 0.584781 | 5.3:-77836202 | MS.gene38268:CDS |
| TTGAAGGATAATGCGACCAC+TGG | 0.591814 | 5.3:+77837536 | None:intergenic |
| CTACAATGAGCTCCGAACCT+CGG | 0.592720 | 5.3:-77837594 | MS.gene38268:CDS |
| CGCCAACAACAAAGATATTG+CGG | 0.594240 | 5.3:-77837560 | MS.gene38268:CDS |
| CAGGAGTCCTATCATTCAAG+TGG | 0.594492 | 5.3:-77836010 | MS.gene38268:CDS |
| ATGCCTTGGATTGATCCACC+AGG | 0.606051 | 5.3:-77836029 | MS.gene38268:CDS |
| ACATGAACCTGTTATACTTG+AGG | 0.618701 | 5.3:+77837165 | None:intergenic |
| GATTGTGAGCATTGGCGGAG+CGG | 0.623842 | 5.3:-77835675 | MS.gene38268:CDS |
| GAACCTGTTATACTTGAGGC+TGG | 0.638511 | 5.3:+77837169 | None:intergenic |
| AAAGTGCCTTGAAAATTGCA+AGG | 0.638843 | 5.3:+77837288 | None:intergenic |
| ACTCCTGGTGGATCAATCCA+AGG | 0.644949 | 5.3:+77836026 | None:intergenic |
| GTAGTCTTACCCTAATGCCA+AGG | 0.645323 | 5.3:+77835920 | None:intergenic |
| TGTAGCAGTTGCAACTGTGT+CGG | 0.648797 | 5.3:-77836299 | MS.gene38268:CDS |
| GCCTCCCAACAGAATAACAC+AGG | 0.658463 | 5.3:+77835724 | None:intergenic |
| AGGAGTCCTATCATTCAAGT+GGG | 0.665530 | 5.3:-77836009 | MS.gene38268:CDS |
| GGTTGCTGTTGGGATCATCA+TGG | 0.682153 | 5.3:-77837507 | MS.gene38268:CDS |
| TGTTATTCGACTCAGATCCG+GGG | 0.684228 | 5.3:-77835697 | MS.gene38268:CDS |
| ACAAAGATATTGCGGACCAG+TGG | 0.685300 | 5.3:-77837552 | MS.gene38268:CDS |
| TTGAATGATAGGACTCCTGG+TGG | 0.704189 | 5.3:+77836014 | None:intergenic |
| TGATGTAGTGAACAAATGTG+AGG | 0.721156 | 5.3:+77837324 | None:intergenic |
| ACCACTGTAAGAGAAAACCG+AGG | 0.773883 | 5.3:+77835949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATTTATTTCCTTGAA+TGG | - | chr5.3:77836964-77836983 | MS.gene38268:intron | 15.0% |
| !! | ATTATGTAATTCAATTATGA+TGG | + | chr5.3:77836026-77836045 | None:intergenic | 15.0% |
| !! | TAATATAAACTAATGAAAGT+AGG | + | chr5.3:77835999-77836018 | None:intergenic | 15.0% |
| !! | TCCAAAAAATATTTCATATT+TGG | - | chr5.3:77835925-77835944 | MS.gene38268:intron | 15.0% |
| !!! | AAATATGAAATATTTTTTGG+AGG | + | chr5.3:77835926-77835945 | None:intergenic | 15.0% |
| !!! | ACCAAATATGAAATATTTTT+TGG | + | chr5.3:77835929-77835948 | None:intergenic | 15.0% |
| !!! | AGACCATAAAATTTTATTTA+TGG | + | chr5.3:77837522-77837541 | None:intergenic | 15.0% |
| !!! | TAATTTTACAAAAGAGAAAT+TGG | + | chr5.3:77837601-77837620 | None:intergenic | 15.0% |
| !!! | TTTTCTGTTTTTTCAAATTT+TGG | - | chr5.3:77835812-77835831 | MS.gene38268:intron | 15.0% |
| !! | AAAAACCATTTCTTCAAAAA+AGG | - | chr5.3:77837256-77837275 | MS.gene38268:CDS | 20.0% |
| !! | AAAGATTATGTTAATTGTCA+TGG | - | chr5.3:77836856-77836875 | MS.gene38268:intron | 20.0% |
| !! | ATATTATTATCAATCAATGC+AGG | - | chr5.3:77837948-77837967 | MS.gene38268:intron | 20.0% |
| !! | ATGTTTCAAATTTGTAAATG+TGG | - | chr5.3:77836730-77836749 | MS.gene38268:intron | 20.0% |
| !! | CATAAACCATTTCAAATATA+TGG | - | chr5.3:77837318-77837337 | MS.gene38268:CDS | 20.0% |
| !! | GATATAACTTTATTGTTGAT+AGG | - | chr5.3:77836357-77836376 | MS.gene38268:intron | 20.0% |
| !! | TATTATTATCAATCAATGCA+GGG | - | chr5.3:77837949-77837968 | MS.gene38268:intron | 20.0% |
| !! | TTAAAAGTCAATGACTAATT+TGG | + | chr5.3:77836657-77836676 | None:intergenic | 20.0% |
| !! | TTGGTATGAAAAATAAACAA+AGG | + | chr5.3:77836638-77836657 | None:intergenic | 20.0% |
| !!! | AAAATTTTATTTATGGCACT+TGG | + | chr5.3:77837515-77837534 | None:intergenic | 20.0% |
| !!! | GATTTAGAGTTCAATTTATT+TGG | - | chr5.3:77837461-77837480 | MS.gene38268:intron | 20.0% |
| !!! | GTGCCATAAATAAAATTTTA+TGG | - | chr5.3:77837516-77837535 | MS.gene38268:CDS | 20.0% |
| !!! | TCTTTTCCATATATTTGAAA+TGG | + | chr5.3:77837327-77837346 | None:intergenic | 20.0% |
| !!! | TTGTCATGGATTTTTTTTAA+AGG | - | chr5.3:77836870-77836889 | MS.gene38268:intron | 20.0% |
| !!! | TTTTTAAAGGTTAATTGTGA+TGG | - | chr5.3:77836883-77836902 | MS.gene38268:intron | 20.0% |
| ! | AAACATAATGACTGAACATT+AGG | + | chr5.3:77836716-77836735 | None:intergenic | 25.0% |
| ! | AAATATCAGCAGTTTGAAAA+GGG | - | chr5.3:77835767-77835786 | MS.gene38268:CDS | 25.0% |
| ! | AATGATGCTGATCATAAATA+GGG | - | chr5.3:77836043-77836062 | MS.gene38268:CDS | 25.0% |
| ! | ATTAGGTCAGTAATGAAAAT+TGG | + | chr5.3:77836699-77836718 | None:intergenic | 25.0% |
| ! | CATAGATGAAGAATTAAGTT+TGG | - | chr5.3:77837011-77837030 | MS.gene38268:intron | 25.0% |
| ! | CATTTGTGTTCAATTCTTAA+TGG | - | chr5.3:77835703-77835722 | MS.gene38268:CDS | 25.0% |
| ! | GCACTAATTAATCATGTAAT+TGG | - | chr5.3:77837372-77837391 | MS.gene38268:intron | 25.0% |
| ! | GTAAGGTATAAATCTGAATT+TGG | - | chr5.3:77835856-77835875 | MS.gene38268:intron | 25.0% |
| ! | TAAATATCAGCAGTTTGAAA+AGG | - | chr5.3:77835766-77835785 | MS.gene38268:CDS | 25.0% |
| ! | TAATGATGCTGATCATAAAT+AGG | - | chr5.3:77836042-77836061 | MS.gene38268:CDS | 25.0% |
| !! | AGACTTAATCTTTTATTGCT+TGG | + | chr5.3:77835900-77835919 | None:intergenic | 25.0% |
| !! | TTTTCAAACTGCTGATATTT+AGG | + | chr5.3:77835767-77835786 | None:intergenic | 25.0% |
| !!! | TATTTGTTATGCTAAGAGTA+AGG | - | chr5.3:77835839-77835858 | MS.gene38268:intron | 25.0% |
| !!! | TGTCAACATGGATTTAATTT+TGG | + | chr5.3:77836802-77836821 | None:intergenic | 25.0% |
| !!! | TGTTGTGTTTTGTTTAAGTA+AGG | - | chr5.3:77837910-77837929 | MS.gene38268:intron | 25.0% |
| !!! | TTTGACCTTTTTTGAAGAAA+TGG | + | chr5.3:77837264-77837283 | None:intergenic | 25.0% |
| AAATCTTACTTGACCATTCA+AGG | + | chr5.3:77836980-77836999 | None:intergenic | 30.0% | |
| AACATACATGCAATATGAGA+AGG | + | chr5.3:77836281-77836300 | None:intergenic | 30.0% | |
| AACCTAATTGAAACTTAAGC+TGG | - | chr5.3:77837102-77837121 | MS.gene38268:intron | 30.0% | |
| AGTAGAATTCTGTGTCAAAA+AGG | + | chr5.3:77837882-77837901 | None:intergenic | 30.0% | |
| AGTGCAAATATAGAAGAGAA+TGG | + | chr5.3:77836511-77836530 | None:intergenic | 30.0% | |
| GAACAAATGTGAGGAAAATT+GGG | + | chr5.3:77836408-77836427 | None:intergenic | 30.0% | |
| GTAGAATTCTGTGTCAAAAA+GGG | + | chr5.3:77837881-77837900 | None:intergenic | 30.0% | |
| GTGCTATAGTTGCAATTATA+TGG | - | chr5.3:77837483-77837502 | MS.gene38268:intron | 30.0% | |
| TCAGACAACAATGTTATTGT+TGG | + | chr5.3:77838239-77838258 | None:intergenic | 30.0% | |
| TCATCATGGTTGAAATTATC+AGG | - | chr5.3:77836091-77836110 | MS.gene38268:intron | 30.0% | |
| TGAACAAATGTGAGGAAAAT+TGG | + | chr5.3:77836409-77836428 | None:intergenic | 30.0% | |
| TTCTCTTCTATATTTGCACT+TGG | - | chr5.3:77836511-77836530 | MS.gene38268:CDS | 30.0% | |
| TTTCTCATTGTAGATTGATG+TGG | - | chr5.3:77837647-77837666 | MS.gene38268:intron | 30.0% | |
| TTTGCTCTAACATGTTTATC+AGG | - | chr5.3:77836597-77836616 | MS.gene38268:intron | 30.0% | |
| ! | ACTTTATTGTTGATAGGTGA+TGG | - | chr5.3:77836363-77836382 | MS.gene38268:intron | 30.0% |
| ! | CTTTATTGTTGATAGGTGAT+GGG | - | chr5.3:77836364-77836383 | MS.gene38268:intron | 30.0% |
| ! | GAATGGTCAAGTAAGATTTT+TGG | - | chr5.3:77836981-77837000 | MS.gene38268:intron | 30.0% |
| AAAAGAAAAGACAGTGATGC+AGG | - | chr5.3:77835547-77835566 | MS.gene38268:CDS | 35.0% | |
| ACATGAACCTGTTATACTTG+AGG | + | chr5.3:77836576-77836595 | None:intergenic | 35.0% | |
| CACCAGCTTAAGTTTCAATT+AGG | + | chr5.3:77837107-77837126 | None:intergenic | 35.0% | |
| CCTAGAAAGAAAACTGTGAT+AGG | + | chr5.3:77837682-77837701 | None:intergenic | 35.0% | |
| GAAATTATCAGGTAAAGCAC+TGG | - | chr5.3:77836102-77836121 | MS.gene38268:intron | 35.0% | |
| GATCATCATGGCAAACAAAT+TGG | - | chr5.3:77836243-77836262 | MS.gene38268:CDS | 35.0% | |
| TAACAGCAATCTTAGCCATT+TGG | + | chr5.3:77837199-77837218 | None:intergenic | 35.0% | |
| TAATTGGAATGCAATGATCC+AGG | - | chr5.3:77837388-77837407 | MS.gene38268:intron | 35.0% | |
| TATTCCTGACTCTCTATGAT+TGG | - | chr5.3:77835673-77835692 | MS.gene38268:CDS | 35.0% | |
| TGATGTAGTGAACAAATGTG+AGG | + | chr5.3:77836417-77836436 | None:intergenic | 35.0% | |
| TGTTACTCCAACAATTGTTC+TGG | - | chr5.3:77837214-77837233 | MS.gene38268:CDS | 35.0% | |
| TTACATCCCACTTGAATGAT+AGG | + | chr5.3:77837738-77837757 | None:intergenic | 35.0% | |
| ! | AAAGTGCCTTGAAAATTGCA+AGG | + | chr5.3:77836453-77836472 | None:intergenic | 35.0% |
| ! | AAGACCTGTGTTATTCTGTT+GGG | - | chr5.3:77838010-77838029 | MS.gene38268:intron | 35.0% |
| ! | CCTATCACAGTTTTCTTTCT+AGG | - | chr5.3:77837679-77837698 | MS.gene38268:intron | 35.0% |
| ! | GATTCTCCTTGCAATTTTCA+AGG | - | chr5.3:77836444-77836463 | MS.gene38268:intron | 35.0% |
| ! | TAAGACCTGTGTTATTCTGT+TGG | - | chr5.3:77838009-77838028 | MS.gene38268:intron | 35.0% |
| !! | ATTTTGATATCTGCTCTCCT+CGG | - | chr5.3:77837772-77837791 | MS.gene38268:intron | 35.0% |
| !! | TGACTTTGTTGTTGTCAACA+TGG | + | chr5.3:77836814-77836833 | None:intergenic | 35.0% |
| !! | TGCAATTTTCAAGGCACTTT+CGG | - | chr5.3:77836453-77836472 | MS.gene38268:intron | 35.0% |
| !! | TGGTGAAGTTTTGTCTAGTT+TGG | - | chr5.3:77837122-77837141 | MS.gene38268:intron | 35.0% |
| !!! | AATGGAGTTGTTTTAGATGG+AGG | + | chr5.3:77836493-77836512 | None:intergenic | 35.0% |
| !!! | GAGAATGGAGTTGTTTTAGA+TGG | + | chr5.3:77836496-77836515 | None:intergenic | 35.0% |
| AAAGCCAATCATAGAGAGTC+AGG | + | chr5.3:77835680-77835699 | None:intergenic | 40.0% | |
| AACAGCAACCATGAAGTTGA+AGG | + | chr5.3:77836221-77836240 | None:intergenic | 40.0% | |
| AACTCTGCCAGAACAATTGT+TGG | + | chr5.3:77837224-77837243 | None:intergenic | 40.0% | |
| AGGAGTCCTATCATTCAAGT+GGG | - | chr5.3:77837729-77837748 | MS.gene38268:intron | 40.0% | |
| ATTTACAGCAGCAAGGAAAC+TGG | - | chr5.3:77837543-77837562 | MS.gene38268:CDS | 40.0% | |
| CATAGAGAGTCAGGAATACA+TGG | + | chr5.3:77835671-77835690 | None:intergenic | 40.0% | |
| CATGATGAGAACACTGCATT+AGG | + | chr5.3:77836079-77836098 | None:intergenic | 40.0% | |
| CGCATTATCCTTCAACTTCA+TGG | - | chr5.3:77836210-77836229 | MS.gene38268:CDS | 40.0% | |
| CGCCAACAACAAAGATATTG+CGG | - | chr5.3:77836178-77836197 | MS.gene38268:intron | 40.0% | |
| CTAATGCAGTGTTCTCATCA+TGG | - | chr5.3:77836077-77836096 | MS.gene38268:CDS | 40.0% | |
| GAACTGAACTGTCAGCAAAA+AGG | + | chr5.3:77837158-77837177 | None:intergenic | 40.0% | |
| GAACTGTCAGCAAAAAGGAA+AGG | + | chr5.3:77837153-77837172 | None:intergenic | 40.0% | |
| GGATTGTTGGATTCACTGTT+GGG | - | chr5.3:77835505-77835524 | MS.gene38268:CDS | 40.0% | |
| GTTGAAGGCAAACTATGCTT+CGG | + | chr5.3:77838166-77838185 | None:intergenic | 40.0% | |
| TCTGTTATTCGACTCAGATC+CGG | - | chr5.3:77838039-77838058 | MS.gene38268:intron | 40.0% | |
| TGGTCTAATTTACAGCAGCA+AGG | - | chr5.3:77837536-77837555 | MS.gene38268:CDS | 40.0% | |
| TTCAACTTCATGGTTGCTGT+TGG | - | chr5.3:77836220-77836239 | MS.gene38268:CDS | 40.0% | |
| TTGTTCACTACATCACTGCA+TGG | - | chr5.3:77836422-77836441 | MS.gene38268:intron | 40.0% | |
| ! | GAATGCAATGATCCAGGTTT+TGG | - | chr5.3:77837394-77837413 | MS.gene38268:intron | 40.0% |
| ! | GTCCGCAATATCTTTGTTGT+TGG | + | chr5.3:77836183-77836202 | None:intergenic | 40.0% |
| ! | TCAACTTCATGGTTGCTGTT+GGG | - | chr5.3:77836221-77836240 | MS.gene38268:CDS | 40.0% |
| ! | TCTTTGTTGTCTTCACTAGC+TGG | + | chr5.3:77838199-77838218 | None:intergenic | 40.0% |
| !! | ATATCTTTGTTGTTGGCGCT+TGG | + | chr5.3:77836176-77836195 | None:intergenic | 40.0% |
| !! | ATTTGCACTTGGTGCTGTTA+TGG | - | chr5.3:77836522-77836541 | MS.gene38268:CDS | 40.0% |
| !! | CAGTGTTGGTTTCTACCAAA+TGG | - | chr5.3:77837181-77837200 | MS.gene38268:CDS | 40.0% |
| !!! | AATGATCCAGGTTTTGGCTT+TGG | - | chr5.3:77837400-77837419 | MS.gene38268:intron | 40.0% |
| !!! | GCTACGACTCATGTTGTTTT+AGG | - | chr5.3:77837980-77837999 | MS.gene38268:intron | 40.0% |
| ACAAAGATATTGCGGACCAG+TGG | - | chr5.3:77836186-77836205 | MS.gene38268:CDS | 45.0% | |
| ACACCAGCCTCAAGTATAAC+AGG | - | chr5.3:77836566-77836585 | MS.gene38268:intron | 45.0% | |
| ACCACTGTAAGAGAAAACCG+AGG | + | chr5.3:77837792-77837811 | None:intergenic | 45.0% | |
| AGTCAGGAATACATGGAAGG+AGG | + | chr5.3:77835664-77835683 | None:intergenic | 45.0% | |
| CACTTGAATGATAGGACTCC+TGG | + | chr5.3:77837730-77837749 | None:intergenic | 45.0% | |
| CAGGAGTCCTATCATTCAAG+TGG | - | chr5.3:77837728-77837747 | MS.gene38268:intron | 45.0% | |
| CAGTTCAGTTCATGCAGTGT+TGG | - | chr5.3:77837167-77837186 | MS.gene38268:intron | 45.0% | |
| CTGTTATTCGACTCAGATCC+GGG | - | chr5.3:77838040-77838059 | MS.gene38268:intron | 45.0% | |
| GAACCTGTTATACTTGAGGC+TGG | + | chr5.3:77836572-77836591 | None:intergenic | 45.0% | |
| GAGAGTCAGGAATACATGGA+AGG | + | chr5.3:77835667-77835686 | None:intergenic | 45.0% | |
| GGGATTGTTGGATTCACTGT+TGG | - | chr5.3:77835504-77835523 | MS.gene38268:CDS | 45.0% | |
| TGTAGCAGTTGCAACTGTGT+CGG | - | chr5.3:77837439-77837458 | MS.gene38268:intron | 45.0% | |
| TGTTATTCGACTCAGATCCG+GGG | - | chr5.3:77838041-77838060 | MS.gene38268:intron | 45.0% | |
| TGTTGCTCTCACTGGAATGT+CGG | - | chr5.3:77838087-77838106 | MS.gene38268:intron | 45.0% | |
| TTGAAGGATAATGCGACCAC+TGG | + | chr5.3:77836205-77836224 | None:intergenic | 45.0% | |
| TTGAATGATAGGACTCCTGG+TGG | + | chr5.3:77837727-77837746 | None:intergenic | 45.0% | |
| TTGGATTCACTGTTGGGAGA+TGG | - | chr5.3:77835511-77835530 | MS.gene38268:CDS | 45.0% | |
| ! | ACCTGTGTTATTCTGTTGGG+AGG | - | chr5.3:77838013-77838032 | MS.gene38268:intron | 45.0% |
| ! | GCTGTTATGGCTTTTGCATC+TGG | - | chr5.3:77836535-77836554 | MS.gene38268:CDS | 45.0% |
| ! | GGTTTTCTCTTACAGTGGTC+AGG | - | chr5.3:77837793-77837812 | MS.gene38268:intron | 45.0% |
| ! | GTAGTCTTACCCTAATGCCA+AGG | + | chr5.3:77837821-77837840 | None:intergenic | 45.0% |
| ! | TCCTCGGTTTTCTCTTACAG+TGG | - | chr5.3:77837788-77837807 | MS.gene38268:intron | 45.0% |
| ! | TTCTAGGAGCTTTGATGCCT+TGG | - | chr5.3:77837695-77837714 | MS.gene38268:intron | 45.0% |
| !! | GTTTTAGATGGAGGAGACAC+AGG | + | chr5.3:77836484-77836503 | None:intergenic | 45.0% |
| !! | TGATAGGTGATGGGAAGAGT+TGG | - | chr5.3:77836373-77836392 | MS.gene38268:intron | 45.0% |
| !!! | GCTGGTTTTTGCTGTGTTGA+AGG | + | chr5.3:77838181-77838200 | None:intergenic | 45.0% |
| !!! | ATTTGATTTATATAAAAAAT+TGG | - | chr5.3:77835632-77835651 | MS.gene38268:CDS | 5.0% |
| ATGCCTTGGATTGATCCACC+AGG | - | chr5.3:77837709-77837728 | MS.gene38268:intron | 50.0% | |
| CTACAATGAGCTCCGAACCT+CGG | - | chr5.3:77836144-77836163 | MS.gene38268:intron | 50.0% | |
| GACAGTGATGCAGGAGAAAC+AGG | - | chr5.3:77835556-77835575 | MS.gene38268:CDS | 50.0% | |
| GCAAGGAAACTGGACAGCTT+TGG | - | chr5.3:77837553-77837572 | MS.gene38268:CDS | 50.0% | |
| GCCTCCCAACAGAATAACAC+AGG | + | chr5.3:77838017-77838036 | None:intergenic | 50.0% | |
| ! | ACTCCTGGTGGATCAATCCA+AGG | + | chr5.3:77837715-77837734 | None:intergenic | 50.0% |
| ! | GGTTGCTGTTGGGATCATCA+TGG | - | chr5.3:77836231-77836250 | MS.gene38268:CDS | 50.0% |
| AATGAGCTCCGAACCTCGGA+AGG | - | chr5.3:77836148-77836167 | MS.gene38268:intron | 55.0% | |
| CAGCAGCCAAAGCCAAAACC+TGG | + | chr5.3:77837409-77837428 | None:intergenic | 55.0% | |
| CTTACAGTGGTCAGGTGCCT+TGG | - | chr5.3:77837801-77837820 | MS.gene38268:intron | 55.0% | |
| GATCCGGGGATTGTGAGCAT+TGG | - | chr5.3:77838055-77838074 | MS.gene38268:intron | 55.0% | |
| GCTTTGGCTGCTGTATCAGC+TGG | - | chr5.3:77837416-77837435 | MS.gene38268:intron | 55.0% | |
| GGTCAGGTGCCTTGGCATTA+GGG | - | chr5.3:77837809-77837828 | MS.gene38268:intron | 55.0% | |
| TGGTCAGGTGCCTTGGCATT+AGG | - | chr5.3:77837808-77837827 | MS.gene38268:intron | 55.0% | |
| !! | GATTGTGAGCATTGGCGGAG+CGG | - | chr5.3:77838063-77838082 | MS.gene38268:intron | 55.0% |
| CCGCCAATGCTCACAATCCC+CGG | + | chr5.3:77838061-77838080 | None:intergenic | 60.0% | |
| GCTTGGCTCCTTCCGAGGTT+CGG | + | chr5.3:77836159-77836178 | None:intergenic | 60.0% | |
| GGAGCGGTTGTTGCTCTCAC+TGG | - | chr5.3:77838079-77838098 | MS.gene38268:intron | 60.0% | |
| !! | CCGGGGATTGTGAGCATTGG+CGG | - | chr5.3:77838058-77838077 | MS.gene38268:intron | 60.0% |
| TTGGCGCTTGGCTCCTTCCG+AGG | + | chr5.3:77836164-77836183 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77835502 | 77838258 | 77835502 | ID=MS.gene38268 |
| chr5.3 | mRNA | 77835502 | 77838258 | 77835502 | ID=MS.gene38268.t1;Parent=MS.gene38268 |
| chr5.3 | exon | 77838183 | 77838258 | 77838183 | ID=MS.gene38268.t1.exon1;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77838183 | 77838258 | 77838183 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| chr5.3 | exon | 77837496 | 77837647 | 77837496 | ID=MS.gene38268.t1.exon2;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77837496 | 77837647 | 77837496 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| chr5.3 | exon | 77837173 | 77837381 | 77837173 | ID=MS.gene38268.t1.exon3;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77837173 | 77837381 | 77837173 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| chr5.3 | exon | 77836483 | 77836576 | 77836483 | ID=MS.gene38268.t1.exon4;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77836483 | 77836576 | 77836483 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| chr5.3 | exon | 77836184 | 77836350 | 77836184 | ID=MS.gene38268.t1.exon5;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77836184 | 77836350 | 77836184 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| chr5.3 | exon | 77835930 | 77836100 | 77835930 | ID=MS.gene38268.t1.exon6;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77835930 | 77836100 | 77835930 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| chr5.3 | exon | 77835502 | 77835790 | 77835502 | ID=MS.gene38268.t1.exon7;Parent=MS.gene38268.t1 |
| chr5.3 | CDS | 77835502 | 77835790 | 77835502 | ID=cds.MS.gene38268.t1;Parent=MS.gene38268.t1 |
| Gene Sequence |
| Protein sequence |
