AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050376


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050376.t1 MTR_5g010520 95.574 1062 47 0 1 1062 1 1062 0.0 2005
MS.gene050376.t1 MTR_5g010520 95.192 936 45 0 1 936 1 936 0.0 1760
MS.gene050376.t1 MTR_8g097350 63.417 1077 334 9 1 1062 1 1032 0.0 1269
MS.gene050376.t1 MTR_8g097350 64.379 991 316 8 1 976 1 969 0.0 1198
MS.gene050376.t1 MTR_0415s0020 68.098 326 104 0 539 864 16 341 7.29e-139 422
MS.gene050376.t1 MTR_1g100633 36.842 779 417 16 1 769 1 714 1.98e-135 428
MS.gene050376.t1 MTR_1g100633 36.842 779 417 16 1 769 1 714 3.40e-135 428
MS.gene050376.t1 MTR_1g100633 36.842 779 417 16 1 769 1 714 3.93e-135 429
MS.gene050376.t1 MTR_1g100633 70.909 55 16 0 1007 1061 798 852 1.08e-14 79.3
MS.gene050376.t1 MTR_0415s0010 59.794 291 107 2 183 463 1 291 6.00e-96 306
MS.gene050376.t1 MTR_3g073620 25.997 727 432 20 1 670 1 678 6.18e-46 181
MS.gene050376.t1 MTR_1g062200 25.370 473 274 14 1 434 1 433 3.54e-25 114
MS.gene050376.t1 MTR_1g062200 25.370 473 274 14 1 434 1 433 3.55e-25 114
MS.gene050376.t1 MTR_1g062200 25.505 545 313 17 566 1058 776 1279 2.21e-11 68.9
MS.gene050376.t1 MTR_1g090807 23.176 466 309 14 1 436 25 471 9.53e-18 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050376.t1 AT1G63300 47.579 1074 506 16 1 1062 1 1029 0.0 840
MS.gene050376.t1 AT5G41140 45.446 1076 478 18 1 1061 1 982 0.0 789
MS.gene050376.t1 AT5G41140 45.345 1074 475 17 1 1061 1 975 0.0 785
MS.gene050376.t1 AT5G52280 36.282 893 445 17 1 886 1 776 1.55e-138 439
MS.gene050376.t1 AT5G52280 63.492 63 23 0 999 1061 790 852 3.31e-14 77.8
MS.gene050376.t1 AT1G22060 26.352 721 425 21 1 671 1 665 3.32e-43 172
MS.gene050376.t1 AT1G22060 26.352 721 425 21 1 671 1 665 3.32e-43 172

Find 188 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCTCTAATCTTCTGATA+TGG 0.200984 5.2:+3652385 None:intergenic
CAGTTTCCTTTGACTTTATC+AGG 0.217694 5.2:+3651179 None:intergenic
CTGTATCGCCGTTGCTGAAT+TGG 0.249416 5.2:+3653875 None:intergenic
CTCAGAGCTCGGGTTAAGTA+TGG 0.260393 5.2:-3653336 MS.gene050376:CDS
CTCAAGCAAGTGTGTCTCTT+TGG 0.267898 5.2:+3652707 None:intergenic
CCAGCATTGAGAAGAGATTC+AGG 0.288948 5.2:-3651489 MS.gene050376:CDS
CTCCTCTAATCTTCTGATAT+GGG 0.296135 5.2:+3652386 None:intergenic
ATGGGTTTCTAGTACCTTAA+TGG 0.298162 5.2:+3652404 None:intergenic
TCTTTATTTCACTCTTTAGC+TGG 0.301119 5.2:+3651530 None:intergenic
CAAAGCTGAACTTGCTGCTT+TGG 0.315649 5.2:-3653234 MS.gene050376:CDS
GTTGATACTCCCTGCGAAAT+TGG 0.316541 5.2:-3653503 MS.gene050376:CDS
TAGTTGACTGAAGCTCTTCT+TGG 0.317857 5.2:+3652082 None:intergenic
CAGAAGATTAGAGGAGGAAA+TGG 0.318237 5.2:-3652379 MS.gene050376:CDS
GGAACTCCAGAGCAGAATTA+TGG 0.323324 5.2:-3651116 MS.gene050376:CDS
CGTTCTGTTGTTTATTGCTT+TGG 0.325606 5.2:+3653574 None:intergenic
TGTATCGCGTTCGTGTCTAT+TGG 0.326142 5.2:+3652827 None:intergenic
AGCTTGGGGAACAAGTTAAT+AGG 0.327660 5.2:-3651939 MS.gene050376:CDS
AGATGTTTCGTTCTTCAAAA+TGG 0.329139 5.2:-3655194 MS.gene050376:CDS
GCAAGAATCAAATGCTGAAT+TGG 0.334048 5.2:-3652913 MS.gene050376:CDS
CTCCAATGGGGATGCCTCTT+GGG 0.337850 5.2:+3653268 None:intergenic
TGCCTCTTGGGAACTTTCCT+TGG 0.342709 5.2:+3653280 None:intergenic
GCTTTCTCTAATCTCTTTGT+TGG 0.351234 5.2:+3654580 None:intergenic
TTCGCAATGCTTCCTCGGCT+TGG 0.354438 5.2:+3652280 None:intergenic
TGAAACTCACATTGAGAATC+TGG 0.362265 5.2:-3652475 MS.gene050376:CDS
CGAAACAGTCAAGTATTATC+AGG 0.373302 5.2:-3654515 MS.gene050376:CDS
TCTGCGGCACGAGCCATAAC+TGG 0.374717 5.2:+3653437 None:intergenic
AATGGAGGAGTGAGAAGAAT+AGG 0.381314 5.2:-3655176 MS.gene050376:CDS
AAACCAGTTTGTTCCAGTTA+TGG 0.383737 5.2:-3653450 MS.gene050376:CDS
TCGAAAATCAGAAGAAGCTT+GGG 0.384283 5.2:-3651954 MS.gene050376:CDS
GCTTGGGGAACAAGTTAATA+GGG 0.389725 5.2:-3651938 MS.gene050376:CDS
GAGAAAACTCTCAGCCCTTA+TGG 0.392278 5.2:+3650600 None:intergenic
CAATGCTTCCTCGGCTTGGA+TGG 0.396921 5.2:+3652284 None:intergenic
GAGGCATTAACAGCAGCATT+TGG 0.397470 5.2:+3653410 None:intergenic
TCATTTGCATTGAGAGTCTC+TGG 0.397576 5.2:+3652208 None:intergenic
AGAGTTTCATCTCTAACTCT+TGG 0.402659 5.2:+3652799 None:intergenic
TCTCCAATGGGGATGCCTCT+TGG 0.408869 5.2:+3653267 None:intergenic
AAATTCTCTAGCTACCATTA+AGG 0.413944 5.2:-3652418 MS.gene050376:CDS
AGAAGAAGTAAGAAATAGAT+TGG 0.415538 5.2:-3650807 MS.gene050376:CDS
TCCTCAGCATTCAAAAGAAA+TGG 0.416016 5.2:-3651395 MS.gene050376:CDS
TTCCTTCAATGACGACAATT+CGG 0.418972 5.2:+3650751 None:intergenic
AGACAGAATGTGACAATATC+AGG 0.419878 5.2:-3653085 MS.gene050376:CDS
GACCGAATTGTCGTCATTGA+AGG 0.423001 5.2:-3650753 MS.gene050376:CDS
AAATTGTCGGTGGGAGAATT+CGG 0.427835 5.2:-3654542 MS.gene050376:CDS
CTGTGACCTGTTTCTCACTT+TGG 0.434319 5.2:+3653037 None:intergenic
ATATTTCAGGTGTTACAATC+AGG 0.434804 5.2:-3654649 MS.gene050376:intron
ACAAAGTGGAAGAATTTAAT+CGG 0.441106 5.2:-3651084 MS.gene050376:CDS
AACCCATATCAGAAGATTAG+AGG 0.442026 5.2:-3652388 MS.gene050376:CDS
TTGGGAACTTTCCTTGGAAA+GGG 0.444214 5.2:+3653286 None:intergenic
CTCATGTCTCTCTTCCCATC+AGG 0.446018 5.2:-3654275 MS.gene050376:CDS
CTCGAAAATCAGAAGAAGCT+TGG 0.447142 5.2:-3651955 MS.gene050376:CDS
TAGACGCAGTTCACTTGCTT+CGG 0.447539 5.2:+3652140 None:intergenic
TCTGCTCCAACATTTCTTCG+AGG 0.449328 5.2:+3652874 None:intergenic
TATCAAAAGCTAGCGCCGTC+GGG 0.449925 5.2:-3654344 MS.gene050376:CDS
CTTGGGAACTTTCCTTGGAA+AGG 0.451320 5.2:+3653285 None:intergenic
AGACTATGAGATATTAAAAC+AGG 0.454104 5.2:-3652598 MS.gene050376:CDS
GAGGAGATGAACACTCATAT+TGG 0.455757 5.2:+3652517 None:intergenic
ACGATGCCAAAGTGAGAAAC+AGG 0.457175 5.2:-3653043 MS.gene050376:CDS
TGTTTAACTGTTCCTGCAGT+TGG 0.458017 5.2:+3652541 None:intergenic
GACACTCTTGAGGTTTCTTA+CGG 0.459347 5.2:+3650622 None:intergenic
CCAGCTCCATAATTCTGCTC+TGG 0.462993 5.2:+3651110 None:intergenic
TGAGTCTCTCAATCTCCAAT+GGG 0.465745 5.2:+3653255 None:intergenic
AAACCTCAAGAGTGTCCATA+AGG 0.465783 5.2:-3650615 MS.gene050376:CDS
CCTTTACAATTTGCTTCCTG+AGG 0.465895 5.2:+3653174 None:intergenic
GGTCTTTCGCAATGCTTCCT+CGG 0.468804 5.2:+3652275 None:intergenic
CTTTATTTCACTCTTTAGCT+GGG 0.470948 5.2:+3651531 None:intergenic
CTCTTAAATGAACAAGTAGA+AGG 0.471330 5.2:-3651853 MS.gene050376:CDS
AGAGACATGAGAGGGCTTTG+TGG 0.474075 5.2:+3654287 None:intergenic
TGGCATCGTCCATGCGTTTG+TGG 0.475881 5.2:+3653057 None:intergenic
CTAGCTTATGTACAAGCTTG+TGG 0.476951 5.2:+3652571 None:intergenic
TACATAATCAGCAAAGTTCA+CGG 0.477014 5.2:+3654314 None:intergenic
GCTTCAATTCAATGCTACTA+AGG 0.477435 5.2:-3655136 MS.gene050376:intron
GAGTTTCATCTCTAACTCTT+GGG 0.477504 5.2:+3652800 None:intergenic
CACGCGGACAATAGTCTTAG+TGG 0.488677 5.2:-3650782 MS.gene050376:CDS
GAGCCATAACTGGAACAAAC+TGG 0.492152 5.2:+3653447 None:intergenic
TCAAGTTCTGATGACAGCTC+TGG 0.494881 5.2:-3653527 MS.gene050376:CDS
TGAATTGGTTCTTGCCGTGC+AGG 0.496687 5.2:-3652898 MS.gene050376:CDS
CCTGAATCTCTTCTCAATGC+TGG 0.497104 5.2:+3651489 None:intergenic
TTGTCTTTCACCTTCGACCT+CGG 0.497897 5.2:+3650658 None:intergenic
CACAATTGCGTCATTGAAGA+AGG 0.500768 5.2:-3651728 MS.gene050376:CDS
TCAATGTCATTCATAGCAGC+AGG 0.501038 5.2:+3652495 None:intergenic
AACAACTTCATCTATGAAGA+AGG 0.501525 5.2:-3651143 MS.gene050376:CDS
AGCCCTTATGGACACTCTTG+AGG 0.501555 5.2:+3650612 None:intergenic
AAGAGTGAAATAAAGAAGAA+AGG 0.501656 5.2:-3651523 MS.gene050376:CDS
AGTATGGGTGATTCAACAAA+CGG 0.501745 5.2:-3653320 MS.gene050376:CDS
CTTTACAATTTGCTTCCTGA+GGG 0.502149 5.2:+3653175 None:intergenic
CATTATCTTGAAAGATGAAA+GGG 0.502436 5.2:-3653117 MS.gene050376:CDS
ATGGCGAAATTGAAATGTAT+AGG 0.502483 5.2:-3652665 MS.gene050376:CDS
TGCTGCTTTGGCGAGGCACA+TGG 0.503620 5.2:-3653222 MS.gene050376:CDS
TTCATCTATGAAGAAGGAAA+AGG 0.506959 5.2:-3651137 MS.gene050376:CDS
TTGGTGTTGTCAATAGTTCC+TGG 0.507047 5.2:-3654616 MS.gene050376:CDS
CTCAAATTTGCCGAGGTCGA+AGG 0.512604 5.2:-3650668 MS.gene050376:CDS
TCAATAGTTCCTGGTGACAT+TGG 0.514235 5.2:-3654607 MS.gene050376:CDS
TTTACATCAGAAATCACAAT+GGG 0.515966 5.2:-3653372 MS.gene050376:CDS
TTGAGTCTCTCAATCTCCAA+TGG 0.520575 5.2:+3653254 None:intergenic
GAAGGAAAGAAACAAATCAA+TGG 0.521587 5.2:-3650735 MS.gene050376:CDS
AAAGTCAAAGGAAACTGCAT+TGG 0.521988 5.2:-3651173 MS.gene050376:CDS
TTCTCAAAATGCCCTTTCCA+AGG 0.530388 5.2:-3653297 MS.gene050376:CDS
GCGAAATTGAAATGTATAGG+AGG 0.530634 5.2:-3652662 MS.gene050376:CDS
CGTCATCTAGCTCAGAGCTC+GGG 0.531611 5.2:-3653346 MS.gene050376:CDS
ATTGTAAAGGAAAGCAAAAG+AGG 0.532163 5.2:-3653161 MS.gene050376:CDS
CCTCAGGAAGCAAATTGTAA+AGG 0.534111 5.2:-3653174 MS.gene050376:CDS
TACCTTTGATGAAAATGAGA+AGG 0.534206 5.2:-3652181 MS.gene050376:CDS
TTCCCAAGAGGCATCCCCAT+TGG 0.536163 5.2:-3653270 MS.gene050376:CDS
ATAAACAACAGAACGTCTAG+TGG 0.536249 5.2:-3653566 MS.gene050376:CDS
TGCTTCGGTCAATGCTCTCA+TGG 0.536262 5.2:+3652155 None:intergenic
AACAGGTCACAGTTGGAAAG+TGG 0.538483 5.2:-3653026 MS.gene050376:CDS
ACAATCAGGGGTAGATGCAT+TGG 0.538961 5.2:-3654635 MS.gene050376:CDS
TTATCAAAAGCTAGCGCCGT+CGG 0.542147 5.2:-3654345 MS.gene050376:CDS
TATTTCAGGTGTTACAATCA+GGG 0.542788 5.2:-3654648 MS.gene050376:intron
AGAAATCTTAAGAACTGACT+TGG 0.543909 5.2:-3651827 MS.gene050376:CDS
CGGTTCAAGATGGAAATTGT+CGG 0.544548 5.2:-3654555 MS.gene050376:CDS
TCTGAAACATTGTTACATCA+AGG 0.545037 5.2:-3651778 MS.gene050376:CDS
TCGTCATCTAGCTCAGAGCT+CGG 0.545721 5.2:-3653347 MS.gene050376:CDS
TTGTATCTATTTGATTGCAA+AGG 0.545922 5.2:+3652031 None:intergenic
GCAGGACCTCGAAGAAATGT+TGG 0.547824 5.2:-3652880 MS.gene050376:CDS
TAGACTATTGAAGTCAGAGT+TGG 0.550029 5.2:-3651638 MS.gene050376:CDS
GAGAAAGCTACGGTTCAAGA+TGG 0.550233 5.2:-3654565 MS.gene050376:CDS
CAGCATTGAGAAGAGATTCA+GGG 0.550761 5.2:-3651488 MS.gene050376:CDS
AACTGGAACAAACTGGTTTG+TGG 0.550964 5.2:+3653454 None:intergenic
CCAGAGCAGAATTATGGAGC+TGG 0.551430 5.2:-3651110 MS.gene050376:CDS
TCAGATACAGCAGATGTTGG+TGG 0.553151 5.2:-3652001 MS.gene050376:CDS
TATTATCAGGATCCAAAGAC+CGG 0.553668 5.2:-3654502 MS.gene050376:CDS
GTTGGTCTTCCAATGTCACC+AGG 0.557975 5.2:+3654598 None:intergenic
GGAACAAACTGGTTTGTGGT+GGG 0.559149 5.2:+3653458 None:intergenic
GGCGAGGCACATGGATGTGT+CGG 0.560632 5.2:-3653213 MS.gene050376:CDS
AACCTCAAGAGTGTCCATAA+GGG 0.560828 5.2:-3650614 MS.gene050376:CDS
CTGAACTTGCTGCTTTGGCG+AGG 0.561486 5.2:-3653229 MS.gene050376:CDS
GCACATGGATGTGTCGGACA+TGG 0.564836 5.2:-3653207 MS.gene050376:CDS
TCATTATCTTGAAAGATGAA+AGG 0.568558 5.2:-3653118 MS.gene050376:CDS
ACTTATGAAGAAATCAATTG+AGG 0.571259 5.2:-3651803 MS.gene050376:CDS
ACATGGAACTACAGACCCTC+AGG 0.571689 5.2:-3653190 MS.gene050376:CDS
AAGAGATTCAGGGATAGTAA+TGG 0.571784 5.2:-3651478 MS.gene050376:CDS
GCTAGAGCAAAGCCAACTGC+AGG 0.575549 5.2:-3652553 MS.gene050376:CDS
GGACGCAACCAACTTTCTGA+TGG 0.575833 5.2:-3651457 MS.gene050376:CDS
TGAAGCTGATATAGAAGCAA+TGG 0.579079 5.2:-3652337 MS.gene050376:CDS
AGTGAGAAACAGGTCACAGT+TGG 0.580096 5.2:-3653033 MS.gene050376:CDS
TCAGAGCTCGGGTTAAGTAT+GGG 0.581632 5.2:-3653335 MS.gene050376:CDS
TGCGTCATTGAAGAAGGAAG+CGG 0.583079 5.2:-3651722 MS.gene050376:CDS
CTTCCCATCAGGAATTCTCA+TGG 0.584077 5.2:-3654264 MS.gene050376:CDS
AAAGGAAAGCAAAAGAGGGC+AGG 0.588422 5.2:-3653156 MS.gene050376:CDS
TAAATCATGCATCGGTGTCG+AGG 0.589755 5.2:+3653391 None:intergenic
ATTTCAGGTGTTACAATCAG+GGG 0.591987 5.2:-3654647 MS.gene050376:intron
AATTCGATGATAAGAGCTCA+AGG 0.592445 5.2:-3653900 MS.gene050376:CDS
AGTTCAGATACAGCAGATGT+TGG 0.594949 5.2:-3652004 MS.gene050376:CDS
CGAAATTGAAATGTATAGGA+GGG 0.599599 5.2:-3652661 MS.gene050376:CDS
AGAACTCAAGGAGCAGTCAG+AGG 0.599935 5.2:-3652448 MS.gene050376:CDS
TACAGCTGAAAGGCTTCAAG+AGG 0.600122 5.2:-3652235 MS.gene050376:CDS
TTCAAGATGGAAATTGTCGG+TGG 0.600830 5.2:-3654552 MS.gene050376:CDS
AGCATTGGATGATCTTGTCA+AGG 0.603938 5.2:-3652742 MS.gene050376:CDS
TGTTTCGTTCTTCAAAATGG+AGG 0.604012 5.2:-3655191 MS.gene050376:CDS
AATGTATAGGAGGGACAAAG+AGG 0.604042 5.2:-3652652 MS.gene050376:CDS
GAACAAACTGGTTTGTGGTG+GGG 0.604811 5.2:+3653459 None:intergenic
TTTCTCAGTCCAATTTCGCA+GGG 0.605119 5.2:+3653494 None:intergenic
AAGTAAAATGAGAAATCTCA+AGG 0.605138 5.2:-3651680 MS.gene050376:CDS
CATTTCTTCGAGGTCCTGCA+CGG 0.609463 5.2:+3652884 None:intergenic
AGCAGCATTTGGAGATTCTG+CGG 0.610316 5.2:+3653421 None:intergenic
TGGAACAAACTGGTTTGTGG+TGG 0.614538 5.2:+3653457 None:intergenic
AAGAGGGCAGGATCTCATGA+AGG 0.615741 5.2:-3653144 MS.gene050376:CDS
CAGGTCTTTCCACAAACGCA+TGG 0.619359 5.2:-3653066 MS.gene050376:CDS
GCAGGGCCTGATAAAGTCAA+AGG 0.619605 5.2:-3651185 MS.gene050376:intron
TTGTAAAGGAAAGCAAAAGA+GGG 0.620965 5.2:-3653160 MS.gene050376:CDS
TTCTGATGTAAATCATGCAT+CGG 0.622397 5.2:+3653383 None:intergenic
AAAATGCTAATACAGCTGAA+AGG 0.622552 5.2:-3652245 MS.gene050376:CDS
GCAAAGAGCCATCCAAGCCG+AGG 0.624482 5.2:-3652292 MS.gene050376:CDS
ATGGGAAGAGAGACATGAGA+GGG 0.634288 5.2:+3654279 None:intergenic
TCAAGATGGAAATTGTCGGT+GGG 0.636130 5.2:-3654551 MS.gene050376:CDS
ATCACCATGAGAATTCCTGA+TGG 0.636391 5.2:+3654260 None:intergenic
TCACCATGAGAATTCCTGAT+GGG 0.636505 5.2:+3654261 None:intergenic
ATCAAAAGCTAGCGCCGTCG+GGG 0.639118 5.2:-3654343 MS.gene050376:CDS
TATGGAGCTGGAGAACAAAG+TGG 0.639915 5.2:-3651098 MS.gene050376:CDS
AAAGAGATTAGAGAAAGCTA+CGG 0.643270 5.2:-3654575 MS.gene050376:CDS
GTCAACTAAAGCCGATTACG+AGG 0.650363 5.2:-3652067 MS.gene050376:CDS
TCAAGGAACCAATTCAGCAA+CGG 0.650410 5.2:-3653883 MS.gene050376:CDS
ATTGTTACATCAAGGAACTG+TGG 0.651765 5.2:-3651770 MS.gene050376:CDS
CCATATCAGAAGATTAGAGG+AGG 0.652060 5.2:-3652385 MS.gene050376:CDS
CGAAAATCAGAAGAAGCTTG+GGG 0.658269 5.2:-3651953 MS.gene050376:CDS
TAAACAACAGAACGTCTAGT+GGG 0.662018 5.2:-3653565 MS.gene050376:CDS
TTCCAAGGAAAGTTCCCAAG+AGG 0.662303 5.2:-3653282 MS.gene050376:CDS
ATTTACATCAGAAATCACAA+TGG 0.664555 5.2:-3653373 MS.gene050376:CDS
GATGGGAAGAGAGACATGAG+AGG 0.665257 5.2:+3654278 None:intergenic
TCGGAATGTTACTTTACACG+AGG 0.681478 5.2:-3651065 MS.gene050376:intron
AATGAGTCTCAAATTTGCCG+AGG 0.681950 5.2:-3650675 MS.gene050376:CDS
ATGTCATTCATAGCAGCAGG+AGG 0.682334 5.2:+3652498 None:intergenic
AGTTAATAGGGATTTCTCTG+AGG 0.682694 5.2:-3651926 MS.gene050376:CDS
GAGTCTCTCAATCTCCAATG+GGG 0.705362 5.2:+3653256 None:intergenic
AGAACTTGACAATGTAACGT+CGG 0.708038 5.2:+3653541 None:intergenic
AAGAAATAGATTGGAACACG+CGG 0.713897 5.2:-3650798 MS.gene050376:CDS
GTTCACGGAAACATCCCCGA+CGG 0.727244 5.2:+3654329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTATTATTGAAATCT+AGG + chr5.2:3650951-3650970 None:intergenic 10.0%
!! AAAAAAATGATCAAATTCAA+AGG - chr5.2:3651731-3651750 MS.gene050376:CDS 15.0%
!! AAAAAAATTATAGACTTGTA+TGG - chr5.2:3653118-3653137 MS.gene050376:CDS 15.0%
!! CCTTTATATTAACATAAAAA+GGG + chr5.2:3654587-3654606 None:intergenic 15.0%
!! CTTTATATTAACATAAAAAG+GGG + chr5.2:3654586-3654605 None:intergenic 15.0%
!! TCCTTTATATTAACATAAAA+AGG + chr5.2:3654588-3654607 None:intergenic 15.0%
!!! GTCATTGTTATATAATTTTT+GGG - chr5.2:3651419-3651438 MS.gene050376:CDS 15.0%
!!! TCATTGTTATATAATTTTTG+GGG - chr5.2:3651420-3651439 MS.gene050376:CDS 15.0%
!!! TGTCATTGTTATATAATTTT+TGG - chr5.2:3651418-3651437 MS.gene050376:CDS 15.0%
!!! TTTTTATTCTTAATGGTATT+AGG - chr5.2:3651068-3651087 MS.gene050376:CDS 15.0%
!! CAAGAAAATTGAAATATGAT+AGG + chr5.2:3650998-3651017 None:intergenic 20.0%
!! GAATGAATAATCTAATGTAT+TGG - chr5.2:3650807-3650826 MS.gene050376:CDS 20.0%
!! TTTGTTTGTATATATTCAAC+TGG - chr5.2:3652064-3652083 MS.gene050376:CDS 20.0%
!!! AAGCAATTTTTTTGTTGATT+GGG + chr5.2:3654383-3654402 None:intergenic 20.0%
!!! AATTTTCTTGGAAATGAAAA+TGG - chr5.2:3651008-3651027 MS.gene050376:intron 20.0%
!!! CCCTTTTTATGTTAATATAA+AGG - chr5.2:3654584-3654603 MS.gene050376:CDS 20.0%
!!! CTATCATATTTCAATTTTCT+TGG - chr5.2:3650996-3651015 MS.gene050376:intron 20.0%
!!! TGATTTTTTGCTTAATAAAC+AGG - chr5.2:3651687-3651706 MS.gene050376:CDS 20.0%
! AAAATTCTTGTGACTTCTTA+CGG - chr5.2:3652004-3652023 MS.gene050376:CDS 25.0%
! AAACTTTCATTGTTGAAATG+TGG - chr5.2:3654866-3654885 MS.gene050376:intron 25.0%
! AAGAGTGAAATAAAGAAGAA+AGG - chr5.2:3654279-3654298 MS.gene050376:CDS 25.0%
! AAGTAAAATGAGAAATCTCA+AGG - chr5.2:3654122-3654141 MS.gene050376:intron 25.0%
! ACAAAGTGGAAGAATTTAAT+CGG - chr5.2:3654718-3654737 MS.gene050376:intron 25.0%
! ACTTATGAAGAAATCAATTG+AGG - chr5.2:3653999-3654018 MS.gene050376:intron 25.0%
! AGAAGAAGTAAGAAATAGAT+TGG - chr5.2:3654995-3655014 MS.gene050376:intron 25.0%
! AGACTATGAGATATTAAAAC+AGG - chr5.2:3653204-3653223 MS.gene050376:CDS 25.0%
! AGAGAAAATAAAAATGCTTG+AGG - chr5.2:3654440-3654459 MS.gene050376:intron 25.0%
! ATTTACATCAGAAATCACAA+TGG - chr5.2:3652429-3652448 MS.gene050376:CDS 25.0%
! CATTATCTTGAAAGATGAAA+GGG - chr5.2:3652685-3652704 MS.gene050376:CDS 25.0%
! TATTCTTAATGGTATTAGGT+TGG - chr5.2:3651072-3651091 MS.gene050376:CDS 25.0%
! TCATTATCTTGAAAGATGAA+AGG - chr5.2:3652684-3652703 MS.gene050376:CDS 25.0%
! TTGTATCTATTTGATTGCAA+AGG + chr5.2:3653774-3653793 None:intergenic 25.0%
! TTTACATCAGAAATCACAAT+GGG - chr5.2:3652430-3652449 MS.gene050376:CDS 25.0%
!!! AAATTCAAAGGTACTACAAA+GGG - chr5.2:3651743-3651762 MS.gene050376:CDS 25.0%
!!! AGCAATTTTTTTGTTGATTG+GGG + chr5.2:3654382-3654401 None:intergenic 25.0%
!!! ATATCATTTTTTGCTCTCAA+CGG - chr5.2:3651341-3651360 MS.gene050376:intron 25.0%
!!! CATTATTAGTTTTCCATTTC+AGG - chr5.2:3651772-3651791 MS.gene050376:CDS 25.0%
!!! GAAGCAATTTTTTTGTTGAT+TGG + chr5.2:3654384-3654403 None:intergenic 25.0%
!!! GCATCTTTTTTAACTGTAAT+CGG + chr5.2:3652871-3652890 None:intergenic 25.0%
!!! TATTTTGTCGTTGATTTTTC+CGG + chr5.2:3651322-3651341 None:intergenic 25.0%
!!! TTTGAAAAAGTCACTTTTTG+AGG - chr5.2:3654212-3654231 MS.gene050376:intron 25.0%
AAAATGCTAATACAGCTGAA+AGG - chr5.2:3653557-3653576 MS.gene050376:CDS 30.0%
AAAGAGATTAGAGAAAGCTA+CGG - chr5.2:3651227-3651246 MS.gene050376:intron 30.0%
AAATTCTCTAGCTACCATTA+AGG - chr5.2:3653384-3653403 MS.gene050376:CDS 30.0%
AACAACTTCATCTATGAAGA+AGG - chr5.2:3654659-3654678 MS.gene050376:intron 30.0%
AACATAAAAAGGGGAAATGA+AGG + chr5.2:3654577-3654596 None:intergenic 30.0%
AATTTCAAGCAACTTCACAT+CGG + chr5.2:3651602-3651621 None:intergenic 30.0%
AGAAATCTTAAGAACTGACT+TGG - chr5.2:3653975-3653994 MS.gene050376:intron 30.0%
ATACTAGCATCAATGATATG+AGG - chr5.2:3654468-3654487 MS.gene050376:CDS 30.0%
ATGAGATGAGAAATTGTGTT+TGG - chr5.2:3651123-3651142 MS.gene050376:CDS 30.0%
ATGGCGAAATTGAAATGTAT+AGG - chr5.2:3653137-3653156 MS.gene050376:CDS 30.0%
ATTCAATAACATTTGCAGAG+AGG - chr5.2:3651852-3651871 MS.gene050376:CDS 30.0%
ATTGTAAAGGAAAGCAAAAG+AGG - chr5.2:3652641-3652660 MS.gene050376:CDS 30.0%
CAAGACTAAGTTTGTAATTC+AGG + chr5.2:3654825-3654844 None:intergenic 30.0%
CAATCTTGTATAACCTGAAA+TGG + chr5.2:3651788-3651807 None:intergenic 30.0%
CGAAATTGAAATGTATAGGA+GGG - chr5.2:3653141-3653160 MS.gene050376:CDS 30.0%
CTCTTAAATGAACAAGTAGA+AGG - chr5.2:3653949-3653968 MS.gene050376:intron 30.0%
GAAATGGAAAAACAAGTACA+GGG - chr5.2:3653439-3653458 MS.gene050376:CDS 30.0%
GAAGGAAAGAAACAAATCAA+TGG - chr5.2:3655067-3655086 MS.gene050376:intron 30.0%
TACATAATCAGCAAAGTTCA+CGG + chr5.2:3651491-3651510 None:intergenic 30.0%
TACCTTTGATGAAAATGAGA+AGG - chr5.2:3653621-3653640 MS.gene050376:intron 30.0%
TGAAGTTGCTTGAAATTTCA+GGG - chr5.2:3651605-3651624 MS.gene050376:CDS 30.0%
TTCATCTATGAAGAAGGAAA+AGG - chr5.2:3654665-3654684 MS.gene050376:intron 30.0%
TTCTGATGTAAATCATGCAT+CGG + chr5.2:3652422-3652441 None:intergenic 30.0%
TTGTAAAGGAAAGCAAAAGA+GGG - chr5.2:3652642-3652661 MS.gene050376:CDS 30.0%
! AGTTTGTAATTCAGGTTTCA+TGG + chr5.2:3654817-3654836 None:intergenic 30.0%
! ATATTTCAGGTGTTACAATC+AGG - chr5.2:3651153-3651172 MS.gene050376:CDS 30.0%
! CTGAAGAGTTTTTAATGATG+TGG - chr5.2:3651820-3651839 MS.gene050376:CDS 30.0%
! CTTTATTTCACTCTTTAGCT+GGG + chr5.2:3654274-3654293 None:intergenic 30.0%
! TATTTCAGGTGTTACAATCA+GGG - chr5.2:3651154-3651173 MS.gene050376:CDS 30.0%
! TCTGAAACATTGTTACATCA+AGG - chr5.2:3654024-3654043 MS.gene050376:intron 30.0%
! TCTTTATTTCACTCTTTAGC+TGG + chr5.2:3654275-3654294 None:intergenic 30.0%
! TGATGAAGATCAAAAAGCAT+TGG - chr5.2:3653045-3653064 MS.gene050376:CDS 30.0%
! TTTTAGATCCATCAGAAAGT+TGG + chr5.2:3654356-3654375 None:intergenic 30.0%
!! ATTACAAACTTAGTCTTGCT+TGG - chr5.2:3654827-3654846 MS.gene050376:intron 30.0%
!! CAAATTCAAAGGTACTACAA+AGG - chr5.2:3651742-3651761 MS.gene050376:CDS 30.0%
!! CATTTCAGGTTATACAAGAT+TGG - chr5.2:3651786-3651805 MS.gene050376:CDS 30.0%
!! CTTCACTCAAAATTTTGAGT+AGG + chr5.2:3651634-3651653 None:intergenic 30.0%
!! GTTTGGTGATGTAATATTTC+AGG - chr5.2:3651140-3651159 MS.gene050376:CDS 30.0%
!! TCTAATGTATTGGTTCTGTT+AGG - chr5.2:3650817-3650836 MS.gene050376:CDS 30.0%
!! TGTATTAGCATTTTTCAGTC+TGG + chr5.2:3653551-3653570 None:intergenic 30.0%
!!! AATTTTTTTGTTGATTGGGG+TGG + chr5.2:3654379-3654398 None:intergenic 30.0%
!!! CATTTTTTTCTTGCATTCTC+TGG + chr5.2:3651720-3651739 None:intergenic 30.0%
!!! CTTCACGTGTTTTTTACTTT+CGG + chr5.2:3652160-3652179 None:intergenic 30.0%
AAAGTCAAAGGAAACTGCAT+TGG - chr5.2:3654629-3654648 MS.gene050376:CDS 35.0%
AACCCATATCAGAAGATTAG+AGG - chr5.2:3653414-3653433 MS.gene050376:CDS 35.0%
AAGAAATAGATTGGAACACG+CGG - chr5.2:3655004-3655023 MS.gene050376:intron 35.0%
AAGAGATTCAGGGATAGTAA+TGG - chr5.2:3654324-3654343 MS.gene050376:CDS 35.0%
AATTCGATGATAAGAGCTCA+AGG - chr5.2:3651902-3651921 MS.gene050376:CDS 35.0%
AGAACTTGACAATGTAACGT+CGG + chr5.2:3652264-3652283 None:intergenic 35.0%
AGACAGAATGTGACAATATC+AGG - chr5.2:3652717-3652736 MS.gene050376:CDS 35.0%
AGAGTTTCATCTCTAACTCT+TGG + chr5.2:3653006-3653025 None:intergenic 35.0%
AGTAAGCATTTCACTCATTC+AGG - chr5.2:3651978-3651997 MS.gene050376:CDS 35.0%
AGTATGGGTGATTCAACAAA+CGG - chr5.2:3652482-3652501 MS.gene050376:CDS 35.0%
AGTTAATAGGGATTTCTCTG+AGG - chr5.2:3653876-3653895 MS.gene050376:CDS 35.0%
ATAAACAACAGAACGTCTAG+TGG - chr5.2:3652236-3652255 MS.gene050376:CDS 35.0%
ATCCTGAACAACCAATTTGA+AGG + chr5.2:3654946-3654965 None:intergenic 35.0%
ATTGTTACATCAAGGAACTG+TGG - chr5.2:3654032-3654051 MS.gene050376:intron 35.0%
CAAGGAAGAAAAAGAAGAAG+AGG - chr5.2:3654140-3654159 MS.gene050376:intron 35.0%
CAATTCAATGCTACTAAGGT+AGG - chr5.2:3650670-3650689 MS.gene050376:CDS 35.0%
CATCAATGATATGAGGACAT+AGG - chr5.2:3654475-3654494 MS.gene050376:CDS 35.0%
CATTAACATGCCCTTCAAAT+TGG - chr5.2:3654932-3654951 MS.gene050376:intron 35.0%
CGAAACAGTCAAGTATTATC+AGG - chr5.2:3651287-3651306 MS.gene050376:intron 35.0%
CTACAGAAAAATCTAGTGGA+AGG - chr5.2:3653682-3653701 MS.gene050376:intron 35.0%
CTCCTCTAATCTTCTGATAT+GGG + chr5.2:3653419-3653438 None:intergenic 35.0%
GAATCTGGAAAAAGAACTCA+AGG - chr5.2:3653342-3653361 MS.gene050376:CDS 35.0%
GAGTTTCATCTCTAACTCTT+GGG + chr5.2:3653005-3653024 None:intergenic 35.0%
GCAAGAATCAAATGCTGAAT+TGG - chr5.2:3652889-3652908 MS.gene050376:CDS 35.0%
GCGAAATTGAAATGTATAGG+AGG - chr5.2:3653140-3653159 MS.gene050376:CDS 35.0%
GCTTCAATTCAATGCTACTA+AGG - chr5.2:3650666-3650685 MS.gene050376:CDS 35.0%
GCTTTCTCTAATCTCTTTGT+TGG + chr5.2:3651225-3651244 None:intergenic 35.0%
GGAAATGGAAAAACAAGTAC+AGG - chr5.2:3653438-3653457 MS.gene050376:CDS 35.0%
GTGAAGTTGCTTGAAATTTC+AGG - chr5.2:3651604-3651623 MS.gene050376:CDS 35.0%
TAAACAACAGAACGTCTAGT+GGG - chr5.2:3652237-3652256 MS.gene050376:CDS 35.0%
TACAAGAGAAAACAGCATTC+AGG + chr5.2:3654529-3654548 None:intergenic 35.0%
TAGACTATTGAAGTCAGAGT+TGG - chr5.2:3654164-3654183 MS.gene050376:intron 35.0%
TATTATCAGGATCCAAAGAC+CGG - chr5.2:3651300-3651319 MS.gene050376:intron 35.0%
TCCTCAGCATTCAAAAGAAA+TGG - chr5.2:3654407-3654426 MS.gene050376:intron 35.0%
TCCTGAACAACCAATTTGAA+GGG + chr5.2:3654945-3654964 None:intergenic 35.0%
TCGAAAATCAGAAGAAGCTT+GGG - chr5.2:3653848-3653867 MS.gene050376:CDS 35.0%
TGAAACTCACATTGAGAATC+TGG - chr5.2:3653327-3653346 MS.gene050376:CDS 35.0%
TGAAGCTGATATAGAAGCAA+TGG - chr5.2:3653465-3653484 MS.gene050376:CDS 35.0%
TGTTTCGTTCTTCAAAATGG+AGG - chr5.2:3650611-3650630 MS.gene050376:CDS 35.0%
TTCCTTCAATGACGACAATT+CGG + chr5.2:3655054-3655073 None:intergenic 35.0%
! AAACCAGTTTGTTCCAGTTA+TGG - chr5.2:3652352-3652371 MS.gene050376:CDS 35.0%
! AGCCTTCTCATTTTCATCAA+AGG + chr5.2:3653626-3653645 None:intergenic 35.0%
! ATTTCAGGTGTTACAATCAG+GGG - chr5.2:3651155-3651174 MS.gene050376:CDS 35.0%
! CAGTTTCCTTTGACTTTATC+AGG + chr5.2:3654626-3654645 None:intergenic 35.0%
! CGTTCTGTTGTTTATTGCTT+TGG + chr5.2:3652231-3652250 None:intergenic 35.0%
! CTTTACAATTTGCTTCCTGA+GGG + chr5.2:3652630-3652649 None:intergenic 35.0%
! GTTCAGTTTTACCTCGTAAT+CGG + chr5.2:3653749-3653768 None:intergenic 35.0%
!! AAAGGTACTACAAAGGGAAT+TGG - chr5.2:3651749-3651768 MS.gene050376:CDS 35.0%
!! ATGGGTTTCTAGTACCTTAA+TGG + chr5.2:3653401-3653420 None:intergenic 35.0%
!!! AAAGTCACTTTTTGAGGATG+AGG - chr5.2:3654218-3654237 MS.gene050376:intron 35.0%
!!! AATTTTTGGGGTTATATGCC+AGG - chr5.2:3651432-3651451 MS.gene050376:CDS 35.0%
!!! ATTTTTGGGGTTATATGCCA+GGG - chr5.2:3651433-3651452 MS.gene050376:CDS 35.0%
AAATTGTCGGTGGGAGAATT+CGG - chr5.2:3651260-3651279 MS.gene050376:intron 40.0%
AATGAGTCTCAAATTTGCCG+AGG - chr5.2:3655127-3655146 MS.gene050376:intron 40.0%
AATGGAGGAGTGAGAAGAAT+AGG - chr5.2:3650626-3650645 MS.gene050376:CDS 40.0%
AATGTATAGGAGGGACAAAG+AGG - chr5.2:3653150-3653169 MS.gene050376:CDS 40.0%
AGCTTGGGGAACAAGTTAAT+AGG - chr5.2:3653863-3653882 MS.gene050376:CDS 40.0%
AGTTCAGATACAGCAGATGT+TGG - chr5.2:3653798-3653817 MS.gene050376:intron 40.0%
ATCACCATGAGAATTCCTGA+TGG + chr5.2:3651545-3651564 None:intergenic 40.0%
ATCCTGTTAAGCAGAGAAAC+AGG + chr5.2:3652201-3652220 None:intergenic 40.0%
CACAATTGCGTCATTGAAGA+AGG - chr5.2:3654074-3654093 MS.gene050376:CDS 40.0%
CAGAAGATTAGAGGAGGAAA+TGG - chr5.2:3653423-3653442 MS.gene050376:CDS 40.0%
CCATATCAGAAGATTAGAGG+AGG - chr5.2:3653417-3653436 MS.gene050376:CDS 40.0%
CCTCAGGAAGCAAATTGTAA+AGG - chr5.2:3652628-3652647 MS.gene050376:CDS 40.0%
CCTCCTCTAATCTTCTGATA+TGG + chr5.2:3653420-3653439 None:intergenic 40.0%
CGAAAATCAGAAGAAGCTTG+GGG - chr5.2:3653849-3653868 MS.gene050376:CDS 40.0%
CGGTTCAAGATGGAAATTGT+CGG - chr5.2:3651247-3651266 MS.gene050376:intron 40.0%
CTAGCTTATGTACAAGCTTG+TGG + chr5.2:3653234-3653253 None:intergenic 40.0%
CTCGAAAATCAGAAGAAGCT+TGG - chr5.2:3653847-3653866 MS.gene050376:CDS 40.0%
GACACTCTTGAGGTTTCTTA+CGG + chr5.2:3655183-3655202 None:intergenic 40.0%
GAGGAGATGAACACTCATAT+TGG + chr5.2:3653288-3653307 None:intergenic 40.0%
GATAGATTGCGTACTGAGTA+AGG + chr5.2:3652095-3652114 None:intergenic 40.0%
GCGTCTACAGAAAAATCTAG+TGG - chr5.2:3653678-3653697 MS.gene050376:intron 40.0%
GCTTGGGGAACAAGTTAATA+GGG - chr5.2:3653864-3653883 MS.gene050376:CDS 40.0%
TAGTTGACTGAAGCTCTTCT+TGG + chr5.2:3653723-3653742 None:intergenic 40.0%
TCAAGATGGAAATTGTCGGT+GGG - chr5.2:3651251-3651270 MS.gene050376:intron 40.0%
TCAAGGAACCAATTCAGCAA+CGG - chr5.2:3651919-3651938 MS.gene050376:CDS 40.0%
TCAATAGTTCCTGGTGACAT+TGG - chr5.2:3651195-3651214 MS.gene050376:intron 40.0%
TCAATGTCATTCATAGCAGC+AGG + chr5.2:3653310-3653329 None:intergenic 40.0%
TCACCATGAGAATTCCTGAT+GGG + chr5.2:3651544-3651563 None:intergenic 40.0%
TCATTTGCATTGAGAGTCTC+TGG + chr5.2:3653597-3653616 None:intergenic 40.0%
TGAGTCTCTCAATCTCCAAT+GGG + chr5.2:3652550-3652569 None:intergenic 40.0%
TGTTTAACTGTTCCTGCAGT+TGG + chr5.2:3653264-3653283 None:intergenic 40.0%
TTCAAGATGGAAATTGTCGG+TGG - chr5.2:3651250-3651269 MS.gene050376:intron 40.0%
TTCTCAAAATGCCCTTTCCA+AGG - chr5.2:3652505-3652524 MS.gene050376:CDS 40.0%
TTGAGTCTCTCAATCTCCAA+TGG + chr5.2:3652551-3652570 None:intergenic 40.0%
TTGGGAACTTTCCTTGGAAA+GGG + chr5.2:3652519-3652538 None:intergenic 40.0%
TTTCTCAGTCCAATTTCGCA+GGG + chr5.2:3652311-3652330 None:intergenic 40.0%
! AGCATTGGATGATCTTGTCA+AGG - chr5.2:3653060-3653079 MS.gene050376:CDS 40.0%
! CAGCATTGAGAAGAGATTCA+GGG - chr5.2:3654314-3654333 MS.gene050376:CDS 40.0%
! CCTTTACAATTTGCTTCCTG+AGG + chr5.2:3652631-3652650 None:intergenic 40.0%
! GCCATTTCTTTTGAATGCTG+AGG + chr5.2:3654411-3654430 None:intergenic 40.0%
! TTCCTGTTTCTCTGCTTAAC+AGG - chr5.2:3652196-3652215 MS.gene050376:CDS 40.0%
! TTCTTTTGAATGCTGAGGAC+TGG + chr5.2:3654406-3654425 None:intergenic 40.0%
! TTTTCTCAGTCCAATTTCGC+AGG + chr5.2:3652312-3652331 None:intergenic 40.0%
!! AAACCTCAAGAGTGTCCATA+AGG - chr5.2:3655187-3655206 MS.gene050376:CDS 40.0%
!! AACCTCAAGAGTGTCCATAA+GGG - chr5.2:3655188-3655207 MS.gene050376:CDS 40.0%
!! AACTGGAACAAACTGGTTTG+TGG + chr5.2:3652351-3652370 None:intergenic 40.0%
!! ATTGGTTCTGTTAGGTTCTG+AGG - chr5.2:3650825-3650844 MS.gene050376:CDS 40.0%
!! TCGGAATGTTACTTTACACG+AGG - chr5.2:3654737-3654756 MS.gene050376:intron 40.0%
!! TTGGTGTTGTCAATAGTTCC+TGG - chr5.2:3651186-3651205 MS.gene050376:intron 40.0%
!! TTGGTTCTGTTAGGTTCTGA+GGG - chr5.2:3650826-3650845 MS.gene050376:CDS 40.0%
!!! CTTCTGATTTTCGAGTTGCA+TGG + chr5.2:3653842-3653861 None:intergenic 40.0%
!!! TCGTTGATTTTTCCGGTCTT+TGG + chr5.2:3651315-3651334 None:intergenic 40.0%
!!! TTTTTGGGGTTATATGCCAG+GGG - chr5.2:3651434-3651453 MS.gene050376:CDS 40.0%
AAAGGAAAGCAAAAGAGGGC+AGG - chr5.2:3652646-3652665 MS.gene050376:CDS 45.0%
AACAGGTCACAGTTGGAAAG+TGG - chr5.2:3652776-3652795 MS.gene050376:CDS 45.0%
ACAATCAGGGGTAGATGCAT+TGG - chr5.2:3651167-3651186 MS.gene050376:CDS 45.0%
ACGATGCCAAAGTGAGAAAC+AGG - chr5.2:3652759-3652778 MS.gene050376:CDS 45.0%
AGCAGCATTTGGAGATTCTG+CGG + chr5.2:3652384-3652403 None:intergenic 45.0%
AGTGAGAAACAGGTCACAGT+TGG - chr5.2:3652769-3652788 MS.gene050376:CDS 45.0%
ATGGGAAGAGAGACATGAGA+GGG + chr5.2:3651526-3651545 None:intergenic 45.0%
ATGTCATTCATAGCAGCAGG+AGG + chr5.2:3653307-3653326 None:intergenic 45.0%
CCTGAATCTCTTCTCAATGC+TGG + chr5.2:3654316-3654335 None:intergenic 45.0%
CTCAAGCAAGTGTGTCTCTT+TGG + chr5.2:3653098-3653117 None:intergenic 45.0%
CTTCCCATCAGGAATTCTCA+TGG - chr5.2:3651538-3651557 MS.gene050376:CDS 45.0%
CTTGGGAACTTTCCTTGGAA+AGG + chr5.2:3652520-3652539 None:intergenic 45.0%
GACCGAATTGTCGTCATTGA+AGG - chr5.2:3655049-3655068 MS.gene050376:intron 45.0%
GAGAAAGCTACGGTTCAAGA+TGG - chr5.2:3651237-3651256 MS.gene050376:intron 45.0%
GAGCCATAACTGGAACAAAC+TGG + chr5.2:3652358-3652377 None:intergenic 45.0%
GAGTCTCTCAATCTCCAATG+GGG + chr5.2:3652549-3652568 None:intergenic 45.0%
GCCCTTCAAATTGGTTGTTC+AGG - chr5.2:3654941-3654960 MS.gene050376:intron 45.0%
GGAACTCCAGAGCAGAATTA+TGG - chr5.2:3654686-3654705 MS.gene050376:intron 45.0%
GTCAACTAAAGCCGATTACG+AGG - chr5.2:3653735-3653754 MS.gene050376:intron 45.0%
GTTGATACTCCCTGCGAAAT+TGG - chr5.2:3652299-3652318 MS.gene050376:CDS 45.0%
TACAGCTGAAAGGCTTCAAG+AGG - chr5.2:3653567-3653586 MS.gene050376:CDS 45.0%
TAGACGCAGTTCACTTGCTT+CGG + chr5.2:3653665-3653684 None:intergenic 45.0%
TATGGAGCTGGAGAACAAAG+TGG - chr5.2:3654704-3654723 MS.gene050376:intron 45.0%
TCAGAGCTCGGGTTAAGTAT+GGG - chr5.2:3652467-3652486 MS.gene050376:CDS 45.0%
TCAGATACAGCAGATGTTGG+TGG - chr5.2:3653801-3653820 MS.gene050376:intron 45.0%
TCTGCTCCAACATTTCTTCG+AGG + chr5.2:3652931-3652950 None:intergenic 45.0%
TGCGTCATTGAAGAAGGAAG+CGG - chr5.2:3654080-3654099 MS.gene050376:CDS 45.0%
TGTATCGCGTTCGTGTCTAT+TGG + chr5.2:3652978-3652997 None:intergenic 45.0%
TTATCAAAAGCTAGCGCCGT+CGG - chr5.2:3651457-3651476 MS.gene050376:CDS 45.0%
TTCCAAGGAAAGTTCCCAAG+AGG - chr5.2:3652520-3652539 MS.gene050376:CDS 45.0%
TTGTCTTTCACCTTCGACCT+CGG + chr5.2:3655147-3655166 None:intergenic 45.0%
! CCAGCATTGAGAAGAGATTC+AGG - chr5.2:3654313-3654332 MS.gene050376:CDS 45.0%
! CTGTGACCTGTTTCTCACTT+TGG + chr5.2:3652768-3652787 None:intergenic 45.0%
! GAGGCATTAACAGCAGCATT+TGG + chr5.2:3652395-3652414 None:intergenic 45.0%
! TCAAGTTCTGATGACAGCTC+TGG - chr5.2:3652275-3652294 MS.gene050376:CDS 45.0%
!! CAAAGCTGAACTTGCTGCTT+TGG - chr5.2:3652568-3652587 MS.gene050376:CDS 45.0%
!! GAACAAACTGGTTTGTGGTG+GGG + chr5.2:3652346-3652365 None:intergenic 45.0%
!! GGAACAAACTGGTTTGTGGT+GGG + chr5.2:3652347-3652366 None:intergenic 45.0%
!! TAAATCATGCATCGGTGTCG+AGG + chr5.2:3652414-3652433 None:intergenic 45.0%
!! TGGAACAAACTGGTTTGTGG+TGG + chr5.2:3652348-3652367 None:intergenic 45.0%
!! AAAAAAACTATTATTAATAA+AGG + chr5.2:3650925-3650944 None:intergenic 5.0%
!!! TTTTTTTTTTTTATTCTTAA+TGG - chr5.2:3651061-3651080 MS.gene050376:intron 5.0%
AAGAGGGCAGGATCTCATGA+AGG - chr5.2:3652658-3652677 MS.gene050376:CDS 50.0%
ACATGGAACTACAGACCCTC+AGG - chr5.2:3652612-3652631 MS.gene050376:CDS 50.0%
AGAACTCAAGGAGCAGTCAG+AGG - chr5.2:3653354-3653373 MS.gene050376:CDS 50.0%
AGAGACATGAGAGGGCTTTG+TGG + chr5.2:3651518-3651537 None:intergenic 50.0%
AGCCCTTATGGACACTCTTG+AGG + chr5.2:3655193-3655212 None:intergenic 50.0%
CAGGTCTTTCCACAAACGCA+TGG - chr5.2:3652736-3652755 MS.gene050376:CDS 50.0%
CATTTCTTCGAGGTCCTGCA+CGG + chr5.2:3652921-3652940 None:intergenic 50.0%
CCAGAGCAGAATTATGGAGC+TGG - chr5.2:3654692-3654711 MS.gene050376:intron 50.0%
CCAGCTCCATAATTCTGCTC+TGG + chr5.2:3654695-3654714 None:intergenic 50.0%
CTCAAATTTGCCGAGGTCGA+AGG - chr5.2:3655134-3655153 MS.gene050376:intron 50.0%
CTCAGAGCTCGGGTTAAGTA+TGG - chr5.2:3652466-3652485 MS.gene050376:CDS 50.0%
CTCATGTCTCTCTTCCCATC+AGG - chr5.2:3651527-3651546 MS.gene050376:CDS 50.0%
CTGTATCGCCGTTGCTGAAT+TGG + chr5.2:3651930-3651949 None:intergenic 50.0%
GATGGGAAGAGAGACATGAG+AGG + chr5.2:3651527-3651546 None:intergenic 50.0%
GCAGGACCTCGAAGAAATGT+TGG - chr5.2:3652922-3652941 MS.gene050376:CDS 50.0%
GCAGGGCCTGATAAAGTCAA+AGG - chr5.2:3654617-3654636 MS.gene050376:CDS 50.0%
GGACGCAACCAACTTTCTGA+TGG - chr5.2:3654345-3654364 MS.gene050376:CDS 50.0%
GGTCTTTCGCAATGCTTCCT+CGG + chr5.2:3653530-3653549 None:intergenic 50.0%
TATCAAAAGCTAGCGCCGTC+GGG - chr5.2:3651458-3651477 MS.gene050376:CDS 50.0%
TGCCTCTTGGGAACTTTCCT+TGG + chr5.2:3652525-3652544 None:intergenic 50.0%
TGCTTCGGTCAATGCTCTCA+TGG + chr5.2:3653650-3653669 None:intergenic 50.0%
! CACGCGGACAATAGTCTTAG+TGG - chr5.2:3655020-3655039 MS.gene050376:intron 50.0%
! TCGTCATCTAGCTCAGAGCT+CGG - chr5.2:3652455-3652474 MS.gene050376:CDS 50.0%
! TGAATTGGTTCTTGCCGTGC+AGG - chr5.2:3652904-3652923 MS.gene050376:CDS 50.0%
!! GTTGGTCTTCCAATGTCACC+AGG + chr5.2:3651207-3651226 None:intergenic 50.0%
!!! CGCTAGCTTTTGATAACCCC+TGG + chr5.2:3651453-3651472 None:intergenic 50.0%
ATCAAAAGCTAGCGCCGTCG+GGG - chr5.2:3651459-3651478 MS.gene050376:CDS 55.0%
CTCCAATGGGGATGCCTCTT+GGG + chr5.2:3652537-3652556 None:intergenic 55.0%
GCACATGGATGTGTCGGACA+TGG - chr5.2:3652595-3652614 MS.gene050376:CDS 55.0%
GCTAGAGCAAAGCCAACTGC+AGG - chr5.2:3653249-3653268 MS.gene050376:CDS 55.0%
GTTCACGGAAACATCCCCGA+CGG + chr5.2:3651476-3651495 None:intergenic 55.0%
TCTCCAATGGGGATGCCTCT+TGG + chr5.2:3652538-3652557 None:intergenic 55.0%
TGGCATCGTCCATGCGTTTG+TGG + chr5.2:3652748-3652767 None:intergenic 55.0%
TTCGCAATGCTTCCTCGGCT+TGG + chr5.2:3653525-3653544 None:intergenic 55.0%
! CGTCATCTAGCTCAGAGCTC+GGG - chr5.2:3652456-3652475 MS.gene050376:CDS 55.0%
!! CAATGCTTCCTCGGCTTGGA+TGG + chr5.2:3653521-3653540 None:intergenic 55.0%
!! CTGAACTTGCTGCTTTGGCG+AGG - chr5.2:3652573-3652592 MS.gene050376:CDS 55.0%
!! TTCCCAAGAGGCATCCCCAT+TGG - chr5.2:3652532-3652551 MS.gene050376:CDS 55.0%
GCAAAGAGCCATCCAAGCCG+AGG - chr5.2:3653510-3653529 MS.gene050376:CDS 60.0%
GGCGAGGCACATGGATGTGT+CGG - chr5.2:3652589-3652608 MS.gene050376:CDS 60.0%
TCTGCGGCACGAGCCATAAC+TGG + chr5.2:3652368-3652387 None:intergenic 60.0%
!! TGCTGCTTTGGCGAGGCACA+TGG - chr5.2:3652580-3652599 MS.gene050376:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 3650610 3655214 3650610 ID=MS.gene050376
chr5.2 mRNA 3650610 3655214 3650610 ID=MS.gene050376.t1;Parent=MS.gene050376
chr5.2 exon 3655137 3655214 3655137 ID=MS.gene050376.t1.exon1;Parent=MS.gene050376.t1
chr5.2 CDS 3655137 3655214 3655137 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3654462 3654662 3654462 ID=MS.gene050376.t1.exon2;Parent=MS.gene050376.t1
chr5.2 CDS 3654462 3654662 3654462 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3654248 3654370 3654248 ID=MS.gene050376.t1.exon3;Parent=MS.gene050376.t1
chr5.2 CDS 3654248 3654370 3654248 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3654072 3654115 3654072 ID=MS.gene050376.t1.exon4;Parent=MS.gene050376.t1
chr5.2 CDS 3654072 3654115 3654072 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3653846 3653954 3653846 ID=MS.gene050376.t1.exon5;Parent=MS.gene050376.t1
chr5.2 CDS 3653846 3653954 3653846 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3651363 3653606 3651363 ID=MS.gene050376.t1.exon6;Parent=MS.gene050376.t1
chr5.2 CDS 3651363 3653606 3651363 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3651066 3651203 3651066 ID=MS.gene050376.t1.exon7;Parent=MS.gene050376.t1
chr5.2 CDS 3651066 3651203 3651066 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
chr5.2 exon 3650610 3650861 3650610 ID=MS.gene050376.t1.exon8;Parent=MS.gene050376.t1
chr5.2 CDS 3650610 3650861 3650610 ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1
Gene Sequence

>MS.gene050376

ATGTTTCGTTCTTCAAAATGGAGGAGTGAGAAGAATAGGATTAAAGCTGTTTTTAAGCTTCAATTCAATGCTACTAAGGTAGGTTCATCTCAGAATTTTTGTATTCATTTTCTTCACTTTCATATTTCTCTGAATTTTTATTTTTTAATCATTTTAATTTCAATTGCATATTTCATTAAACACTGAGTTATATTGAAGAATGAATAATCTAATGTATTGGTTCTGTTAGGTTCTGAGGGTTTTGATAATCTTTTATGATCAAATTTGATCTGATTAAATTAAAAGAGAGTTGTAAATTAGTCACTAGTGCTACCTTTATTAATAATAGTTTTTTTTTTCCTAGATTTCAATAATAATATAAAGTGAAAAAAGTAACATTTCTTAACCTATCATATTTCAATTTTCTTGGAAATGAAAATGGATTTTGCAATAGTGTGAATTATGATGATCATTTTTTTTTTTTATTCTTAATGGTATTAGGTTGGAAATTTTAAATTAACATAACAAGATGAGATGAGATGAGAAATTGTGTTTGGTGATGTAATATTTCAGGTGTTACAATCAGGGGTAGATGCATTGGTGTTGTCAATAGTTCCTGGTGACATTGGAAGACCAACAAAGAGATTAGAGAAAGCTACGGTTCAAGATGGAAATTGTCGGTGGGAGAATTCGGTATACGAAACAGTCAAGTATTATCAGGATCCAAAGACCGGAAAAATCAACGACAAAATATATCATTTTTTGCTCTCAACGGTATATAAAATTTTCTCTCTTCATAAGTACTAGTAATTGTTAATTTGCTTACTTTTGTCATTGTTATATAATTTTTGGGGTTATATGCCAGGGGTTATCAAAAGCTAGCGCCGTCGGGGATGTTTCCGTGAACTTTGCTGATTATGTAGATGCCACAAAGCCCTCTCATGTCTCTCTTCCCATCAGGAATTCTCATGGTGATGCTGTTTTGCATGTTAGTATATTTTTTTTTTGTTCCGATGTGAAGTTGCTTGAAATTTCAGGGAAACCTACTCAAAATTTTGAGTGAAGCATAAGTCAAAGCAATGTTGATGTGATTGAATTTGATTTTTTGCTTAATAAACAGGTATCTATCCAGAGAATGCAAGAAAAAAATGATCAAATTCAAAGGTACTACAAAGGGAATTGGCATTATTAGTTTTCCATTTCAGGTTATACAAGATTGGATTTGTTATGACTGAAGAGTTTTTAATGATGTGGTTTTATTGTATTCAATAACATTTGCAGAGAGGAAGATGAATGTGAAGATAGAAAACTAAAATTCGATGATAAGAGCTCAAGGAACCAATTCAGCAACGGCGATACAGATGAAAGCACTAAAAGTTATTTTTCTGAAGTAAGCATTTCACTCATTCAGGCTAAAAATTCTTGTGACTTCTTACGGTGTATTGTTTTTTTGCACATTTTGAATTTTTCTGAAATTTGTTTGTATATATTCAACTGGCTTGTCCTTACTCAGTACGCAATCTATCTGTTTCTTTTGTTCTTTTGCACTTTTCTTTTGTTCTTTTGTGCCGAAAGTAAAAAACACGTGAAGATGAAAATGATTAAGTTTCCTGTTTCTCTGCTTAACAGGATGTCTCTTCCAAAGCAATAAACAACAGAACGTCTAGTGGGTCCGACGTTACATTGTCAAGTTCTGATGACAGCTCTGGAGTTGATACTCCCTGCGAAATTGGACTGAGAAAAACAAACATTCACCCCACCACAAACCAGTTTGTTCCAGTTATGGCTCGTGCCGCAGAATCTCCAAATGCTGCTGTTAATGCCTCGACACCGATGCATGATTTACATCAGAAATCACAATGGGATTCGTCATCTAGCTCAGAGCTCGGGTTAAGTATGGGTGATTCAACAAACGGTTCTCAAAATGCCCTTTCCAAGGAAAGTTCCCAAGAGGCATCCCCATTGGAGATTGAGAGACTCAAAGCTGAACTTGCTGCTTTGGCGAGGCACATGGATGTGTCGGACATGGAACTACAGACCCTCAGGAAGCAAATTGTAAAGGAAAGCAAAAGAGGGCAGGATCTCATGAAGGAAATCATTATCTTGAAAGATGAAAGGGATGCACTCAAGACAGAATGTGACAATATCAGGTCTTTCCACAAACGCATGGACGATGCCAAAGTGAGAAACAGGTCACAGTTGGAAAGTGGAGATCATCATGCTTTTGTCGAAGAAATCAGACAAGAATTGAATTATGAGAAAGACACGAATGCAAATCTCCGATTACAGTTAAAAAAGATGCAAGAATCAAATGCTGAATTGGTTCTTGCCGTGCAGGACCTCGAAGAAATGTTGGAGCAGAAAAATATGAATATGTCTAAAGATTCCAATAGACACGAACGCGATACAAATTCCCAAGAGTTAGAGATGAAACTCTCACAGTGTGAAACAAGTGATGATGAAGATCAAAAAGCATTGGATGATCTTGTCAAGGAGAAAAGTGACGCCAAAGAGACACACTTGCTTGAGAAAAAAATTATAGACTTGTATGGCGAAATTGAAATGTATAGGAGGGACAAAGAGGAGTTAGAGATGCAAATAGAGCAGATTGCACTAGACTATGAGATATTAAAACAGGAAAACCACAAGCTTGTACATAAGCTAGAGCAAAGCCAACTGCAGGAACAGTTAAACATCCAATATGAGTGTTCATCTCCTCCTGCTGCTATGAATGACATTGAAACTCACATTGAGAATCTGGAAAAAGAACTCAAGGAGCAGTCAGAGGATTTCTCAAATTCTCTAGCTACCATTAAGGTACTAGAAACCCATATCAGAAGATTAGAGGAGGAAATGGAAAAACAAGTACAGGGATTTGAAGCTGATATAGAAGCAATGGCACGTGAAAAAGTCGAGCAAGAGCAAAGAGCCATCCAAGCCGAGGAAGCATTGCGAAAGACCAGACTGAAAAATGCTAATACAGCTGAAAGGCTTCAAGAGGAATTCCAGAGACTCTCAATGCAAATGACTTCTACCTTTGATGAAAATGAGAAGGCTACCATGAGAGCATTGACCGAAGCAAGTGAACTGCGTCTACAGAAAAATCTAGTGGAAGGAATGCTACAAAAAGTCCAAGAAGAGCTTCAGTCAACTAAAGCCGATTACGAGGTAAAACTGAACGACCTTTGCAATCAAATAGATACAATGAAAGTTCAGATACAGCAGATGTTGGTGGAAATCGAAGACAAGTCCATGCAACTCGAAAATCAGAAGAAGCTTGGGGAACAAGTTAATAGGGATTTCTCTGAGGAGTTTGATATGCTAAAAGCTGAGAATGAAAAGCTTAAACTAGAGATTTCGCTCTTAAATGAACAAGTAGAAGGAAAAGAAATCTTAAGAACTGACTTGGAACTTATGAAGAAATCAATTGAGGAATCTGAAACATTGTTACATCAAGGAACTGTGGAAAGAGATGAACTTGTGAGCACAATTGCGTCATTGAAGAAGGAAGCGGAACATTCGCTTAACGAGCTAAGTAAAATGAGAAATCTCAAGGAAGAAAAAGAAGAAGAGGCTAGACTATTGAAGTCAGAGTTGGAAGCTATTAGAGTTCAATGCAGTGATTTGAAAAAGTCACTTTTTGAGGATGAGGCTGAGAAAGAAAAACTAAGAAAGCAAATTTCCCAGCTAAAGAGTGAAATAAAGAAGAAAGGTGATGCATTAACCAGCATTGAGAAGAGATTCAGGGATAGTAATGGACGCAACCAACTTTCTGATGGATCTAAAACCACCCCAATCAACAAAAAAATTGCTTCCAGTCCTCAGCATTCAAAAGAAATGGCAAGTCTGAGAGAGAAAATAAAAATGCTTGAGGTAACTATACTAGCATCAATGATATGAGGACATAGGTTGTTTTGTTTGAGAAAATTTATTGCTACCTGAATGCTGTTTTCTCTTGTAATATTTCACAGCATATACTATATATCCTTCATTTCCCCTTTTTATGTTAATATAAAGGATTGTTTATGGCAGGGCCTGATAAAGTCAAAGGAAACTGCATTGGAAACTTCAACAACTTCATCTATGAAGAAGGAAAAGGAACTCCAGAGCAGAATTATGGAGCTGGAGAACAAAGTGGAAGAATTTAATCGGAATGTTACTTTACACGAGGTAAACTCATACTGATGTACATCAACGCTAGAACTATTGCAAACGCATTTTTGTTCCATGAAACCTGAATTACAAACTTAGTCTTGCTTGGAAATAGCATCTAGATCAAACTTTCATTGTTGAAATGTGGATTGATAATGAAGCAATTGAATTACATATCTTCAATAAATTGACATTAACATGCCCTTCAAATTGGTTGTTCAGGATAGAAGTATTAAAAGTTCAAATGAGATATCAGAAGAAGTAAGAAATAGATTGGAACACGCGGACAATAGTCTTAGTGGCGTAATGACCGAATTGTCGTCATTGAAGGAAAGAAACAAATCAATGGAAAGCGAGCTCAAAGAGATGCAAGAGAGATACTCAGAAATGAGTCTCAAATTTGCCGAGGTCGAAGGTGAAAGACAAATTCTTGTTATGACCGTAAGAAACCTCAAGAGTGTCCATAAGGGCTGA

Protein sequence

>MS.gene050376.t1

MFRSSKWRSEKNRIKAVFKLQFNATKVLQSGVDALVLSIVPGDIGRPTKRLEKATVQDGNCRWENSVYETVKYYQDPKTGKINDKIYHFLLSTGLSKASAVGDVSVNFADYVDATKPSHVSLPIRNSHGDAVLHVSIQRMQEKNDQIQREEDECEDRKLKFDDKSSRNQFSNGDTDESTKSYFSEDVSSKAINNRTSSGSDVTLSSSDDSSGVDTPCEIGLRKTNIHPTTNQFVPVMARAAESPNAAVNASTPMHDLHQKSQWDSSSSSELGLSMGDSTNGSQNALSKESSQEASPLEIERLKAELAALARHMDVSDMELQTLRKQIVKESKRGQDLMKEIIILKDERDALKTECDNIRSFHKRMDDAKVRNRSQLESGDHHAFVEEIRQELNYEKDTNANLRLQLKKMQESNAELVLAVQDLEEMLEQKNMNMSKDSNRHERDTNSQELEMKLSQCETSDDEDQKALDDLVKEKSDAKETHLLEKKIIDLYGEIEMYRRDKEELEMQIEQIALDYEILKQENHKLVHKLEQSQLQEQLNIQYECSSPPAAMNDIETHIENLEKELKEQSEDFSNSLATIKVLETHIRRLEEEMEKQVQGFEADIEAMAREKVEQEQRAIQAEEALRKTRLKNANTAERLQEEFQRLSMQMTSTFDENEKATMRALTEASELRLQKNLVEGMLQKVQEELQSTKADYEVKLNDLCNQIDTMKVQIQQMLVEIEDKSMQLENQKKLGEQVNRDFSEEFDMLKAENEKLKLEISLLNEQVEGKEILRTDLELMKKSIEESETLLHQGTVERDELVSTIASLKKEAEHSLNELSKMRNLKEEKEEEARLLKSELEAIRVQCSDLKKSLFEDEAEKEKLRKQISQLKSEIKKKGDALTSIEKRFRDSNGRNQLSDGSKTTPINKKIASSPQHSKEMASLREKIKMLEGLIKSKETALETSTTSSMKKEKELQSRIMELENKVEEFNRNVTLHEDRSIKSSNEISEEVRNRLEHADNSLSGVMTELSSLKERNKSMESELKEMQERYSEMSLKFAEVEGERQILVMTVRNLKSVHKG