Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050376.t1 | XP_003611115.1 | 91.3 | 1062 | 92 | 0 | 1 | 1062 | 1 | 1062 | 0.00E+00 | 1521.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050376.t1 | G7KDD8 | 91.3 | 1062 | 92 | 0 | 1 | 1062 | 1 | 1062 | 0.0e+00 | 1521.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050376 | MS.gene052665 | 0.803609 | 3.21E-49 | -1.69E-46 |
MS.gene050376 | MS.gene065908 | 0.808955 | 2.40E-50 | -1.69E-46 |
MS.gene050376 | MS.gene066433 | 0.822684 | 2.08E-53 | -1.69E-46 |
MS.gene050376 | MS.gene072801 | 0.896141 | 4.90E-76 | -1.69E-46 |
MS.gene050376 | MS.gene31879 | 0.812527 | 4.05E-51 | -1.69E-46 |
MS.gene050376 | MS.gene35631 | 0.800715 | 1.27E-48 | -1.69E-46 |
MS.gene050376 | MS.gene38268 | 0.807596 | 4.68E-50 | -1.69E-46 |
MS.gene050376 | MS.gene50708 | 0.816619 | 5.04E-52 | -1.69E-46 |
MS.gene050376 | MS.gene59404 | 0.806801 | 6.90E-50 | -1.69E-46 |
MS.gene050376 | MS.gene69794 | 0.833668 | 4.67E-56 | -1.69E-46 |
MS.gene050376 | MS.gene72557 | 0.815102 | 1.10E-51 | -1.69E-46 |
MS.gene050376 | MS.gene79092 | 0.803775 | 2.97E-49 | -1.69E-46 |
MS.gene050376 | MS.gene81294 | 0.803851 | 2.86E-49 | -1.69E-46 |
MS.gene050376 | MS.gene82929 | 0.815727 | 7.97E-52 | -1.69E-46 |
MS.gene050376 | MS.gene84326 | 0.800461 | 1.43E-48 | -1.69E-46 |
MS.gene050376 | MS.gene91965 | 0.800078 | 1.71E-48 | -1.69E-46 |
MS.gene050376 | MS.gene94683 | 0.801615 | 8.28E-49 | -1.69E-46 |
MS.gene050376 | MS.gene95624 | 0.802724 | 4.90E-49 | -1.69E-46 |
MS.gene050376 | MS.gene96598 | 0.814218 | 1.72E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene050376 | MS.gene34485 | PPI |
MS.gene050376 | MS.gene91501 | PPI |
MS.gene050376 | MS.gene41427 | PPI |
MS.gene050376 | MS.gene43975 | PPI |
MS.gene050376 | MS.gene033776 | PPI |
MS.gene93915 | MS.gene050376 | PPI |
MS.gene050376 | MS.gene073110 | PPI |
MS.gene050376 | MS.gene005105 | PPI |
MS.gene050376 | MS.gene67841 | PPI |
MS.gene050376 | MS.gene00106 | PPI |
MS.gene050376 | MS.gene49082 | PPI |
MS.gene050376 | MS.gene93913 | PPI |
MS.gene050376 | MS.gene48616 | PPI |
MS.gene050376 | MS.gene35346 | PPI |
MS.gene050376 | MS.gene94636 | PPI |
MS.gene050376 | MS.gene94379 | PPI |
MS.gene050376 | MS.gene55940 | PPI |
MS.gene050376 | MS.gene043158 | PPI |
MS.gene050376 | MS.gene036437 | PPI |
MS.gene050376 | MS.gene058289 | PPI |
MS.gene050376 | MS.gene93911 | PPI |
MS.gene050376 | MS.gene006300 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050376.t1 | MTR_5g010520 | 95.574 | 1062 | 47 | 0 | 1 | 1062 | 1 | 1062 | 0.0 | 2005 |
MS.gene050376.t1 | MTR_5g010520 | 95.192 | 936 | 45 | 0 | 1 | 936 | 1 | 936 | 0.0 | 1760 |
MS.gene050376.t1 | MTR_8g097350 | 63.417 | 1077 | 334 | 9 | 1 | 1062 | 1 | 1032 | 0.0 | 1269 |
MS.gene050376.t1 | MTR_8g097350 | 64.379 | 991 | 316 | 8 | 1 | 976 | 1 | 969 | 0.0 | 1198 |
MS.gene050376.t1 | MTR_0415s0020 | 68.098 | 326 | 104 | 0 | 539 | 864 | 16 | 341 | 7.29e-139 | 422 |
MS.gene050376.t1 | MTR_1g100633 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 1.98e-135 | 428 |
MS.gene050376.t1 | MTR_1g100633 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 3.40e-135 | 428 |
MS.gene050376.t1 | MTR_1g100633 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 3.93e-135 | 429 |
MS.gene050376.t1 | MTR_1g100633 | 70.909 | 55 | 16 | 0 | 1007 | 1061 | 798 | 852 | 1.08e-14 | 79.3 |
MS.gene050376.t1 | MTR_0415s0010 | 59.794 | 291 | 107 | 2 | 183 | 463 | 1 | 291 | 6.00e-96 | 306 |
MS.gene050376.t1 | MTR_3g073620 | 25.997 | 727 | 432 | 20 | 1 | 670 | 1 | 678 | 6.18e-46 | 181 |
MS.gene050376.t1 | MTR_1g062200 | 25.370 | 473 | 274 | 14 | 1 | 434 | 1 | 433 | 3.54e-25 | 114 |
MS.gene050376.t1 | MTR_1g062200 | 25.370 | 473 | 274 | 14 | 1 | 434 | 1 | 433 | 3.55e-25 | 114 |
MS.gene050376.t1 | MTR_1g062200 | 25.505 | 545 | 313 | 17 | 566 | 1058 | 776 | 1279 | 2.21e-11 | 68.9 |
MS.gene050376.t1 | MTR_1g090807 | 23.176 | 466 | 309 | 14 | 1 | 436 | 25 | 471 | 9.53e-18 | 89.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050376.t1 | AT1G63300 | 47.579 | 1074 | 506 | 16 | 1 | 1062 | 1 | 1029 | 0.0 | 840 |
MS.gene050376.t1 | AT5G41140 | 45.446 | 1076 | 478 | 18 | 1 | 1061 | 1 | 982 | 0.0 | 789 |
MS.gene050376.t1 | AT5G41140 | 45.345 | 1074 | 475 | 17 | 1 | 1061 | 1 | 975 | 0.0 | 785 |
MS.gene050376.t1 | AT5G52280 | 36.282 | 893 | 445 | 17 | 1 | 886 | 1 | 776 | 1.55e-138 | 439 |
MS.gene050376.t1 | AT5G52280 | 63.492 | 63 | 23 | 0 | 999 | 1061 | 790 | 852 | 3.31e-14 | 77.8 |
MS.gene050376.t1 | AT1G22060 | 26.352 | 721 | 425 | 21 | 1 | 671 | 1 | 665 | 3.32e-43 | 172 |
MS.gene050376.t1 | AT1G22060 | 26.352 | 721 | 425 | 21 | 1 | 671 | 1 | 665 | 3.32e-43 | 172 |
Find 188 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCCTCTAATCTTCTGATA+TGG | 0.200984 | 5.2:+3652385 | None:intergenic |
CAGTTTCCTTTGACTTTATC+AGG | 0.217694 | 5.2:+3651179 | None:intergenic |
CTGTATCGCCGTTGCTGAAT+TGG | 0.249416 | 5.2:+3653875 | None:intergenic |
CTCAGAGCTCGGGTTAAGTA+TGG | 0.260393 | 5.2:-3653336 | MS.gene050376:CDS |
CTCAAGCAAGTGTGTCTCTT+TGG | 0.267898 | 5.2:+3652707 | None:intergenic |
CCAGCATTGAGAAGAGATTC+AGG | 0.288948 | 5.2:-3651489 | MS.gene050376:CDS |
CTCCTCTAATCTTCTGATAT+GGG | 0.296135 | 5.2:+3652386 | None:intergenic |
ATGGGTTTCTAGTACCTTAA+TGG | 0.298162 | 5.2:+3652404 | None:intergenic |
TCTTTATTTCACTCTTTAGC+TGG | 0.301119 | 5.2:+3651530 | None:intergenic |
CAAAGCTGAACTTGCTGCTT+TGG | 0.315649 | 5.2:-3653234 | MS.gene050376:CDS |
GTTGATACTCCCTGCGAAAT+TGG | 0.316541 | 5.2:-3653503 | MS.gene050376:CDS |
TAGTTGACTGAAGCTCTTCT+TGG | 0.317857 | 5.2:+3652082 | None:intergenic |
CAGAAGATTAGAGGAGGAAA+TGG | 0.318237 | 5.2:-3652379 | MS.gene050376:CDS |
GGAACTCCAGAGCAGAATTA+TGG | 0.323324 | 5.2:-3651116 | MS.gene050376:CDS |
CGTTCTGTTGTTTATTGCTT+TGG | 0.325606 | 5.2:+3653574 | None:intergenic |
TGTATCGCGTTCGTGTCTAT+TGG | 0.326142 | 5.2:+3652827 | None:intergenic |
AGCTTGGGGAACAAGTTAAT+AGG | 0.327660 | 5.2:-3651939 | MS.gene050376:CDS |
AGATGTTTCGTTCTTCAAAA+TGG | 0.329139 | 5.2:-3655194 | MS.gene050376:CDS |
GCAAGAATCAAATGCTGAAT+TGG | 0.334048 | 5.2:-3652913 | MS.gene050376:CDS |
CTCCAATGGGGATGCCTCTT+GGG | 0.337850 | 5.2:+3653268 | None:intergenic |
TGCCTCTTGGGAACTTTCCT+TGG | 0.342709 | 5.2:+3653280 | None:intergenic |
GCTTTCTCTAATCTCTTTGT+TGG | 0.351234 | 5.2:+3654580 | None:intergenic |
TTCGCAATGCTTCCTCGGCT+TGG | 0.354438 | 5.2:+3652280 | None:intergenic |
TGAAACTCACATTGAGAATC+TGG | 0.362265 | 5.2:-3652475 | MS.gene050376:CDS |
CGAAACAGTCAAGTATTATC+AGG | 0.373302 | 5.2:-3654515 | MS.gene050376:CDS |
TCTGCGGCACGAGCCATAAC+TGG | 0.374717 | 5.2:+3653437 | None:intergenic |
AATGGAGGAGTGAGAAGAAT+AGG | 0.381314 | 5.2:-3655176 | MS.gene050376:CDS |
AAACCAGTTTGTTCCAGTTA+TGG | 0.383737 | 5.2:-3653450 | MS.gene050376:CDS |
TCGAAAATCAGAAGAAGCTT+GGG | 0.384283 | 5.2:-3651954 | MS.gene050376:CDS |
GCTTGGGGAACAAGTTAATA+GGG | 0.389725 | 5.2:-3651938 | MS.gene050376:CDS |
GAGAAAACTCTCAGCCCTTA+TGG | 0.392278 | 5.2:+3650600 | None:intergenic |
CAATGCTTCCTCGGCTTGGA+TGG | 0.396921 | 5.2:+3652284 | None:intergenic |
GAGGCATTAACAGCAGCATT+TGG | 0.397470 | 5.2:+3653410 | None:intergenic |
TCATTTGCATTGAGAGTCTC+TGG | 0.397576 | 5.2:+3652208 | None:intergenic |
AGAGTTTCATCTCTAACTCT+TGG | 0.402659 | 5.2:+3652799 | None:intergenic |
TCTCCAATGGGGATGCCTCT+TGG | 0.408869 | 5.2:+3653267 | None:intergenic |
AAATTCTCTAGCTACCATTA+AGG | 0.413944 | 5.2:-3652418 | MS.gene050376:CDS |
AGAAGAAGTAAGAAATAGAT+TGG | 0.415538 | 5.2:-3650807 | MS.gene050376:CDS |
TCCTCAGCATTCAAAAGAAA+TGG | 0.416016 | 5.2:-3651395 | MS.gene050376:CDS |
TTCCTTCAATGACGACAATT+CGG | 0.418972 | 5.2:+3650751 | None:intergenic |
AGACAGAATGTGACAATATC+AGG | 0.419878 | 5.2:-3653085 | MS.gene050376:CDS |
GACCGAATTGTCGTCATTGA+AGG | 0.423001 | 5.2:-3650753 | MS.gene050376:CDS |
AAATTGTCGGTGGGAGAATT+CGG | 0.427835 | 5.2:-3654542 | MS.gene050376:CDS |
CTGTGACCTGTTTCTCACTT+TGG | 0.434319 | 5.2:+3653037 | None:intergenic |
ATATTTCAGGTGTTACAATC+AGG | 0.434804 | 5.2:-3654649 | MS.gene050376:intron |
ACAAAGTGGAAGAATTTAAT+CGG | 0.441106 | 5.2:-3651084 | MS.gene050376:CDS |
AACCCATATCAGAAGATTAG+AGG | 0.442026 | 5.2:-3652388 | MS.gene050376:CDS |
TTGGGAACTTTCCTTGGAAA+GGG | 0.444214 | 5.2:+3653286 | None:intergenic |
CTCATGTCTCTCTTCCCATC+AGG | 0.446018 | 5.2:-3654275 | MS.gene050376:CDS |
CTCGAAAATCAGAAGAAGCT+TGG | 0.447142 | 5.2:-3651955 | MS.gene050376:CDS |
TAGACGCAGTTCACTTGCTT+CGG | 0.447539 | 5.2:+3652140 | None:intergenic |
TCTGCTCCAACATTTCTTCG+AGG | 0.449328 | 5.2:+3652874 | None:intergenic |
TATCAAAAGCTAGCGCCGTC+GGG | 0.449925 | 5.2:-3654344 | MS.gene050376:CDS |
CTTGGGAACTTTCCTTGGAA+AGG | 0.451320 | 5.2:+3653285 | None:intergenic |
AGACTATGAGATATTAAAAC+AGG | 0.454104 | 5.2:-3652598 | MS.gene050376:CDS |
GAGGAGATGAACACTCATAT+TGG | 0.455757 | 5.2:+3652517 | None:intergenic |
ACGATGCCAAAGTGAGAAAC+AGG | 0.457175 | 5.2:-3653043 | MS.gene050376:CDS |
TGTTTAACTGTTCCTGCAGT+TGG | 0.458017 | 5.2:+3652541 | None:intergenic |
GACACTCTTGAGGTTTCTTA+CGG | 0.459347 | 5.2:+3650622 | None:intergenic |
CCAGCTCCATAATTCTGCTC+TGG | 0.462993 | 5.2:+3651110 | None:intergenic |
TGAGTCTCTCAATCTCCAAT+GGG | 0.465745 | 5.2:+3653255 | None:intergenic |
AAACCTCAAGAGTGTCCATA+AGG | 0.465783 | 5.2:-3650615 | MS.gene050376:CDS |
CCTTTACAATTTGCTTCCTG+AGG | 0.465895 | 5.2:+3653174 | None:intergenic |
GGTCTTTCGCAATGCTTCCT+CGG | 0.468804 | 5.2:+3652275 | None:intergenic |
CTTTATTTCACTCTTTAGCT+GGG | 0.470948 | 5.2:+3651531 | None:intergenic |
CTCTTAAATGAACAAGTAGA+AGG | 0.471330 | 5.2:-3651853 | MS.gene050376:CDS |
AGAGACATGAGAGGGCTTTG+TGG | 0.474075 | 5.2:+3654287 | None:intergenic |
TGGCATCGTCCATGCGTTTG+TGG | 0.475881 | 5.2:+3653057 | None:intergenic |
CTAGCTTATGTACAAGCTTG+TGG | 0.476951 | 5.2:+3652571 | None:intergenic |
TACATAATCAGCAAAGTTCA+CGG | 0.477014 | 5.2:+3654314 | None:intergenic |
GCTTCAATTCAATGCTACTA+AGG | 0.477435 | 5.2:-3655136 | MS.gene050376:intron |
GAGTTTCATCTCTAACTCTT+GGG | 0.477504 | 5.2:+3652800 | None:intergenic |
CACGCGGACAATAGTCTTAG+TGG | 0.488677 | 5.2:-3650782 | MS.gene050376:CDS |
GAGCCATAACTGGAACAAAC+TGG | 0.492152 | 5.2:+3653447 | None:intergenic |
TCAAGTTCTGATGACAGCTC+TGG | 0.494881 | 5.2:-3653527 | MS.gene050376:CDS |
TGAATTGGTTCTTGCCGTGC+AGG | 0.496687 | 5.2:-3652898 | MS.gene050376:CDS |
CCTGAATCTCTTCTCAATGC+TGG | 0.497104 | 5.2:+3651489 | None:intergenic |
TTGTCTTTCACCTTCGACCT+CGG | 0.497897 | 5.2:+3650658 | None:intergenic |
CACAATTGCGTCATTGAAGA+AGG | 0.500768 | 5.2:-3651728 | MS.gene050376:CDS |
TCAATGTCATTCATAGCAGC+AGG | 0.501038 | 5.2:+3652495 | None:intergenic |
AACAACTTCATCTATGAAGA+AGG | 0.501525 | 5.2:-3651143 | MS.gene050376:CDS |
AGCCCTTATGGACACTCTTG+AGG | 0.501555 | 5.2:+3650612 | None:intergenic |
AAGAGTGAAATAAAGAAGAA+AGG | 0.501656 | 5.2:-3651523 | MS.gene050376:CDS |
AGTATGGGTGATTCAACAAA+CGG | 0.501745 | 5.2:-3653320 | MS.gene050376:CDS |
CTTTACAATTTGCTTCCTGA+GGG | 0.502149 | 5.2:+3653175 | None:intergenic |
CATTATCTTGAAAGATGAAA+GGG | 0.502436 | 5.2:-3653117 | MS.gene050376:CDS |
ATGGCGAAATTGAAATGTAT+AGG | 0.502483 | 5.2:-3652665 | MS.gene050376:CDS |
TGCTGCTTTGGCGAGGCACA+TGG | 0.503620 | 5.2:-3653222 | MS.gene050376:CDS |
TTCATCTATGAAGAAGGAAA+AGG | 0.506959 | 5.2:-3651137 | MS.gene050376:CDS |
TTGGTGTTGTCAATAGTTCC+TGG | 0.507047 | 5.2:-3654616 | MS.gene050376:CDS |
CTCAAATTTGCCGAGGTCGA+AGG | 0.512604 | 5.2:-3650668 | MS.gene050376:CDS |
TCAATAGTTCCTGGTGACAT+TGG | 0.514235 | 5.2:-3654607 | MS.gene050376:CDS |
TTTACATCAGAAATCACAAT+GGG | 0.515966 | 5.2:-3653372 | MS.gene050376:CDS |
TTGAGTCTCTCAATCTCCAA+TGG | 0.520575 | 5.2:+3653254 | None:intergenic |
GAAGGAAAGAAACAAATCAA+TGG | 0.521587 | 5.2:-3650735 | MS.gene050376:CDS |
AAAGTCAAAGGAAACTGCAT+TGG | 0.521988 | 5.2:-3651173 | MS.gene050376:CDS |
TTCTCAAAATGCCCTTTCCA+AGG | 0.530388 | 5.2:-3653297 | MS.gene050376:CDS |
GCGAAATTGAAATGTATAGG+AGG | 0.530634 | 5.2:-3652662 | MS.gene050376:CDS |
CGTCATCTAGCTCAGAGCTC+GGG | 0.531611 | 5.2:-3653346 | MS.gene050376:CDS |
ATTGTAAAGGAAAGCAAAAG+AGG | 0.532163 | 5.2:-3653161 | MS.gene050376:CDS |
CCTCAGGAAGCAAATTGTAA+AGG | 0.534111 | 5.2:-3653174 | MS.gene050376:CDS |
TACCTTTGATGAAAATGAGA+AGG | 0.534206 | 5.2:-3652181 | MS.gene050376:CDS |
TTCCCAAGAGGCATCCCCAT+TGG | 0.536163 | 5.2:-3653270 | MS.gene050376:CDS |
ATAAACAACAGAACGTCTAG+TGG | 0.536249 | 5.2:-3653566 | MS.gene050376:CDS |
TGCTTCGGTCAATGCTCTCA+TGG | 0.536262 | 5.2:+3652155 | None:intergenic |
AACAGGTCACAGTTGGAAAG+TGG | 0.538483 | 5.2:-3653026 | MS.gene050376:CDS |
ACAATCAGGGGTAGATGCAT+TGG | 0.538961 | 5.2:-3654635 | MS.gene050376:CDS |
TTATCAAAAGCTAGCGCCGT+CGG | 0.542147 | 5.2:-3654345 | MS.gene050376:CDS |
TATTTCAGGTGTTACAATCA+GGG | 0.542788 | 5.2:-3654648 | MS.gene050376:intron |
AGAAATCTTAAGAACTGACT+TGG | 0.543909 | 5.2:-3651827 | MS.gene050376:CDS |
CGGTTCAAGATGGAAATTGT+CGG | 0.544548 | 5.2:-3654555 | MS.gene050376:CDS |
TCTGAAACATTGTTACATCA+AGG | 0.545037 | 5.2:-3651778 | MS.gene050376:CDS |
TCGTCATCTAGCTCAGAGCT+CGG | 0.545721 | 5.2:-3653347 | MS.gene050376:CDS |
TTGTATCTATTTGATTGCAA+AGG | 0.545922 | 5.2:+3652031 | None:intergenic |
GCAGGACCTCGAAGAAATGT+TGG | 0.547824 | 5.2:-3652880 | MS.gene050376:CDS |
TAGACTATTGAAGTCAGAGT+TGG | 0.550029 | 5.2:-3651638 | MS.gene050376:CDS |
GAGAAAGCTACGGTTCAAGA+TGG | 0.550233 | 5.2:-3654565 | MS.gene050376:CDS |
CAGCATTGAGAAGAGATTCA+GGG | 0.550761 | 5.2:-3651488 | MS.gene050376:CDS |
AACTGGAACAAACTGGTTTG+TGG | 0.550964 | 5.2:+3653454 | None:intergenic |
CCAGAGCAGAATTATGGAGC+TGG | 0.551430 | 5.2:-3651110 | MS.gene050376:CDS |
TCAGATACAGCAGATGTTGG+TGG | 0.553151 | 5.2:-3652001 | MS.gene050376:CDS |
TATTATCAGGATCCAAAGAC+CGG | 0.553668 | 5.2:-3654502 | MS.gene050376:CDS |
GTTGGTCTTCCAATGTCACC+AGG | 0.557975 | 5.2:+3654598 | None:intergenic |
GGAACAAACTGGTTTGTGGT+GGG | 0.559149 | 5.2:+3653458 | None:intergenic |
GGCGAGGCACATGGATGTGT+CGG | 0.560632 | 5.2:-3653213 | MS.gene050376:CDS |
AACCTCAAGAGTGTCCATAA+GGG | 0.560828 | 5.2:-3650614 | MS.gene050376:CDS |
CTGAACTTGCTGCTTTGGCG+AGG | 0.561486 | 5.2:-3653229 | MS.gene050376:CDS |
GCACATGGATGTGTCGGACA+TGG | 0.564836 | 5.2:-3653207 | MS.gene050376:CDS |
TCATTATCTTGAAAGATGAA+AGG | 0.568558 | 5.2:-3653118 | MS.gene050376:CDS |
ACTTATGAAGAAATCAATTG+AGG | 0.571259 | 5.2:-3651803 | MS.gene050376:CDS |
ACATGGAACTACAGACCCTC+AGG | 0.571689 | 5.2:-3653190 | MS.gene050376:CDS |
AAGAGATTCAGGGATAGTAA+TGG | 0.571784 | 5.2:-3651478 | MS.gene050376:CDS |
GCTAGAGCAAAGCCAACTGC+AGG | 0.575549 | 5.2:-3652553 | MS.gene050376:CDS |
GGACGCAACCAACTTTCTGA+TGG | 0.575833 | 5.2:-3651457 | MS.gene050376:CDS |
TGAAGCTGATATAGAAGCAA+TGG | 0.579079 | 5.2:-3652337 | MS.gene050376:CDS |
AGTGAGAAACAGGTCACAGT+TGG | 0.580096 | 5.2:-3653033 | MS.gene050376:CDS |
TCAGAGCTCGGGTTAAGTAT+GGG | 0.581632 | 5.2:-3653335 | MS.gene050376:CDS |
TGCGTCATTGAAGAAGGAAG+CGG | 0.583079 | 5.2:-3651722 | MS.gene050376:CDS |
CTTCCCATCAGGAATTCTCA+TGG | 0.584077 | 5.2:-3654264 | MS.gene050376:CDS |
AAAGGAAAGCAAAAGAGGGC+AGG | 0.588422 | 5.2:-3653156 | MS.gene050376:CDS |
TAAATCATGCATCGGTGTCG+AGG | 0.589755 | 5.2:+3653391 | None:intergenic |
ATTTCAGGTGTTACAATCAG+GGG | 0.591987 | 5.2:-3654647 | MS.gene050376:intron |
AATTCGATGATAAGAGCTCA+AGG | 0.592445 | 5.2:-3653900 | MS.gene050376:CDS |
AGTTCAGATACAGCAGATGT+TGG | 0.594949 | 5.2:-3652004 | MS.gene050376:CDS |
CGAAATTGAAATGTATAGGA+GGG | 0.599599 | 5.2:-3652661 | MS.gene050376:CDS |
AGAACTCAAGGAGCAGTCAG+AGG | 0.599935 | 5.2:-3652448 | MS.gene050376:CDS |
TACAGCTGAAAGGCTTCAAG+AGG | 0.600122 | 5.2:-3652235 | MS.gene050376:CDS |
TTCAAGATGGAAATTGTCGG+TGG | 0.600830 | 5.2:-3654552 | MS.gene050376:CDS |
AGCATTGGATGATCTTGTCA+AGG | 0.603938 | 5.2:-3652742 | MS.gene050376:CDS |
TGTTTCGTTCTTCAAAATGG+AGG | 0.604012 | 5.2:-3655191 | MS.gene050376:CDS |
AATGTATAGGAGGGACAAAG+AGG | 0.604042 | 5.2:-3652652 | MS.gene050376:CDS |
GAACAAACTGGTTTGTGGTG+GGG | 0.604811 | 5.2:+3653459 | None:intergenic |
TTTCTCAGTCCAATTTCGCA+GGG | 0.605119 | 5.2:+3653494 | None:intergenic |
AAGTAAAATGAGAAATCTCA+AGG | 0.605138 | 5.2:-3651680 | MS.gene050376:CDS |
CATTTCTTCGAGGTCCTGCA+CGG | 0.609463 | 5.2:+3652884 | None:intergenic |
AGCAGCATTTGGAGATTCTG+CGG | 0.610316 | 5.2:+3653421 | None:intergenic |
TGGAACAAACTGGTTTGTGG+TGG | 0.614538 | 5.2:+3653457 | None:intergenic |
AAGAGGGCAGGATCTCATGA+AGG | 0.615741 | 5.2:-3653144 | MS.gene050376:CDS |
CAGGTCTTTCCACAAACGCA+TGG | 0.619359 | 5.2:-3653066 | MS.gene050376:CDS |
GCAGGGCCTGATAAAGTCAA+AGG | 0.619605 | 5.2:-3651185 | MS.gene050376:intron |
TTGTAAAGGAAAGCAAAAGA+GGG | 0.620965 | 5.2:-3653160 | MS.gene050376:CDS |
TTCTGATGTAAATCATGCAT+CGG | 0.622397 | 5.2:+3653383 | None:intergenic |
AAAATGCTAATACAGCTGAA+AGG | 0.622552 | 5.2:-3652245 | MS.gene050376:CDS |
GCAAAGAGCCATCCAAGCCG+AGG | 0.624482 | 5.2:-3652292 | MS.gene050376:CDS |
ATGGGAAGAGAGACATGAGA+GGG | 0.634288 | 5.2:+3654279 | None:intergenic |
TCAAGATGGAAATTGTCGGT+GGG | 0.636130 | 5.2:-3654551 | MS.gene050376:CDS |
ATCACCATGAGAATTCCTGA+TGG | 0.636391 | 5.2:+3654260 | None:intergenic |
TCACCATGAGAATTCCTGAT+GGG | 0.636505 | 5.2:+3654261 | None:intergenic |
ATCAAAAGCTAGCGCCGTCG+GGG | 0.639118 | 5.2:-3654343 | MS.gene050376:CDS |
TATGGAGCTGGAGAACAAAG+TGG | 0.639915 | 5.2:-3651098 | MS.gene050376:CDS |
AAAGAGATTAGAGAAAGCTA+CGG | 0.643270 | 5.2:-3654575 | MS.gene050376:CDS |
GTCAACTAAAGCCGATTACG+AGG | 0.650363 | 5.2:-3652067 | MS.gene050376:CDS |
TCAAGGAACCAATTCAGCAA+CGG | 0.650410 | 5.2:-3653883 | MS.gene050376:CDS |
ATTGTTACATCAAGGAACTG+TGG | 0.651765 | 5.2:-3651770 | MS.gene050376:CDS |
CCATATCAGAAGATTAGAGG+AGG | 0.652060 | 5.2:-3652385 | MS.gene050376:CDS |
CGAAAATCAGAAGAAGCTTG+GGG | 0.658269 | 5.2:-3651953 | MS.gene050376:CDS |
TAAACAACAGAACGTCTAGT+GGG | 0.662018 | 5.2:-3653565 | MS.gene050376:CDS |
TTCCAAGGAAAGTTCCCAAG+AGG | 0.662303 | 5.2:-3653282 | MS.gene050376:CDS |
ATTTACATCAGAAATCACAA+TGG | 0.664555 | 5.2:-3653373 | MS.gene050376:CDS |
GATGGGAAGAGAGACATGAG+AGG | 0.665257 | 5.2:+3654278 | None:intergenic |
TCGGAATGTTACTTTACACG+AGG | 0.681478 | 5.2:-3651065 | MS.gene050376:intron |
AATGAGTCTCAAATTTGCCG+AGG | 0.681950 | 5.2:-3650675 | MS.gene050376:CDS |
ATGTCATTCATAGCAGCAGG+AGG | 0.682334 | 5.2:+3652498 | None:intergenic |
AGTTAATAGGGATTTCTCTG+AGG | 0.682694 | 5.2:-3651926 | MS.gene050376:CDS |
GAGTCTCTCAATCTCCAATG+GGG | 0.705362 | 5.2:+3653256 | None:intergenic |
AGAACTTGACAATGTAACGT+CGG | 0.708038 | 5.2:+3653541 | None:intergenic |
AAGAAATAGATTGGAACACG+CGG | 0.713897 | 5.2:-3650798 | MS.gene050376:CDS |
GTTCACGGAAACATCCCCGA+CGG | 0.727244 | 5.2:+3654329 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATATTATTATTGAAATCT+AGG | + | chr5.2:3650951-3650970 | None:intergenic | 10.0% |
!! | AAAAAAATGATCAAATTCAA+AGG | - | chr5.2:3651731-3651750 | MS.gene050376:CDS | 15.0% |
!! | AAAAAAATTATAGACTTGTA+TGG | - | chr5.2:3653118-3653137 | MS.gene050376:CDS | 15.0% |
!! | CCTTTATATTAACATAAAAA+GGG | + | chr5.2:3654587-3654606 | None:intergenic | 15.0% |
!! | CTTTATATTAACATAAAAAG+GGG | + | chr5.2:3654586-3654605 | None:intergenic | 15.0% |
!! | TCCTTTATATTAACATAAAA+AGG | + | chr5.2:3654588-3654607 | None:intergenic | 15.0% |
!!! | GTCATTGTTATATAATTTTT+GGG | - | chr5.2:3651419-3651438 | MS.gene050376:CDS | 15.0% |
!!! | TCATTGTTATATAATTTTTG+GGG | - | chr5.2:3651420-3651439 | MS.gene050376:CDS | 15.0% |
!!! | TGTCATTGTTATATAATTTT+TGG | - | chr5.2:3651418-3651437 | MS.gene050376:CDS | 15.0% |
!!! | TTTTTATTCTTAATGGTATT+AGG | - | chr5.2:3651068-3651087 | MS.gene050376:CDS | 15.0% |
!! | CAAGAAAATTGAAATATGAT+AGG | + | chr5.2:3650998-3651017 | None:intergenic | 20.0% |
!! | GAATGAATAATCTAATGTAT+TGG | - | chr5.2:3650807-3650826 | MS.gene050376:CDS | 20.0% |
!! | TTTGTTTGTATATATTCAAC+TGG | - | chr5.2:3652064-3652083 | MS.gene050376:CDS | 20.0% |
!!! | AAGCAATTTTTTTGTTGATT+GGG | + | chr5.2:3654383-3654402 | None:intergenic | 20.0% |
!!! | AATTTTCTTGGAAATGAAAA+TGG | - | chr5.2:3651008-3651027 | MS.gene050376:intron | 20.0% |
!!! | CCCTTTTTATGTTAATATAA+AGG | - | chr5.2:3654584-3654603 | MS.gene050376:CDS | 20.0% |
!!! | CTATCATATTTCAATTTTCT+TGG | - | chr5.2:3650996-3651015 | MS.gene050376:intron | 20.0% |
!!! | TGATTTTTTGCTTAATAAAC+AGG | - | chr5.2:3651687-3651706 | MS.gene050376:CDS | 20.0% |
! | AAAATTCTTGTGACTTCTTA+CGG | - | chr5.2:3652004-3652023 | MS.gene050376:CDS | 25.0% |
! | AAACTTTCATTGTTGAAATG+TGG | - | chr5.2:3654866-3654885 | MS.gene050376:intron | 25.0% |
! | AAGAGTGAAATAAAGAAGAA+AGG | - | chr5.2:3654279-3654298 | MS.gene050376:CDS | 25.0% |
! | AAGTAAAATGAGAAATCTCA+AGG | - | chr5.2:3654122-3654141 | MS.gene050376:intron | 25.0% |
! | ACAAAGTGGAAGAATTTAAT+CGG | - | chr5.2:3654718-3654737 | MS.gene050376:intron | 25.0% |
! | ACTTATGAAGAAATCAATTG+AGG | - | chr5.2:3653999-3654018 | MS.gene050376:intron | 25.0% |
! | AGAAGAAGTAAGAAATAGAT+TGG | - | chr5.2:3654995-3655014 | MS.gene050376:intron | 25.0% |
! | AGACTATGAGATATTAAAAC+AGG | - | chr5.2:3653204-3653223 | MS.gene050376:CDS | 25.0% |
! | AGAGAAAATAAAAATGCTTG+AGG | - | chr5.2:3654440-3654459 | MS.gene050376:intron | 25.0% |
! | ATTTACATCAGAAATCACAA+TGG | - | chr5.2:3652429-3652448 | MS.gene050376:CDS | 25.0% |
! | CATTATCTTGAAAGATGAAA+GGG | - | chr5.2:3652685-3652704 | MS.gene050376:CDS | 25.0% |
! | TATTCTTAATGGTATTAGGT+TGG | - | chr5.2:3651072-3651091 | MS.gene050376:CDS | 25.0% |
! | TCATTATCTTGAAAGATGAA+AGG | - | chr5.2:3652684-3652703 | MS.gene050376:CDS | 25.0% |
! | TTGTATCTATTTGATTGCAA+AGG | + | chr5.2:3653774-3653793 | None:intergenic | 25.0% |
! | TTTACATCAGAAATCACAAT+GGG | - | chr5.2:3652430-3652449 | MS.gene050376:CDS | 25.0% |
!!! | AAATTCAAAGGTACTACAAA+GGG | - | chr5.2:3651743-3651762 | MS.gene050376:CDS | 25.0% |
!!! | AGCAATTTTTTTGTTGATTG+GGG | + | chr5.2:3654382-3654401 | None:intergenic | 25.0% |
!!! | ATATCATTTTTTGCTCTCAA+CGG | - | chr5.2:3651341-3651360 | MS.gene050376:intron | 25.0% |
!!! | CATTATTAGTTTTCCATTTC+AGG | - | chr5.2:3651772-3651791 | MS.gene050376:CDS | 25.0% |
!!! | GAAGCAATTTTTTTGTTGAT+TGG | + | chr5.2:3654384-3654403 | None:intergenic | 25.0% |
!!! | GCATCTTTTTTAACTGTAAT+CGG | + | chr5.2:3652871-3652890 | None:intergenic | 25.0% |
!!! | TATTTTGTCGTTGATTTTTC+CGG | + | chr5.2:3651322-3651341 | None:intergenic | 25.0% |
!!! | TTTGAAAAAGTCACTTTTTG+AGG | - | chr5.2:3654212-3654231 | MS.gene050376:intron | 25.0% |
AAAATGCTAATACAGCTGAA+AGG | - | chr5.2:3653557-3653576 | MS.gene050376:CDS | 30.0% | |
AAAGAGATTAGAGAAAGCTA+CGG | - | chr5.2:3651227-3651246 | MS.gene050376:intron | 30.0% | |
AAATTCTCTAGCTACCATTA+AGG | - | chr5.2:3653384-3653403 | MS.gene050376:CDS | 30.0% | |
AACAACTTCATCTATGAAGA+AGG | - | chr5.2:3654659-3654678 | MS.gene050376:intron | 30.0% | |
AACATAAAAAGGGGAAATGA+AGG | + | chr5.2:3654577-3654596 | None:intergenic | 30.0% | |
AATTTCAAGCAACTTCACAT+CGG | + | chr5.2:3651602-3651621 | None:intergenic | 30.0% | |
AGAAATCTTAAGAACTGACT+TGG | - | chr5.2:3653975-3653994 | MS.gene050376:intron | 30.0% | |
ATACTAGCATCAATGATATG+AGG | - | chr5.2:3654468-3654487 | MS.gene050376:CDS | 30.0% | |
ATGAGATGAGAAATTGTGTT+TGG | - | chr5.2:3651123-3651142 | MS.gene050376:CDS | 30.0% | |
ATGGCGAAATTGAAATGTAT+AGG | - | chr5.2:3653137-3653156 | MS.gene050376:CDS | 30.0% | |
ATTCAATAACATTTGCAGAG+AGG | - | chr5.2:3651852-3651871 | MS.gene050376:CDS | 30.0% | |
ATTGTAAAGGAAAGCAAAAG+AGG | - | chr5.2:3652641-3652660 | MS.gene050376:CDS | 30.0% | |
CAAGACTAAGTTTGTAATTC+AGG | + | chr5.2:3654825-3654844 | None:intergenic | 30.0% | |
CAATCTTGTATAACCTGAAA+TGG | + | chr5.2:3651788-3651807 | None:intergenic | 30.0% | |
CGAAATTGAAATGTATAGGA+GGG | - | chr5.2:3653141-3653160 | MS.gene050376:CDS | 30.0% | |
CTCTTAAATGAACAAGTAGA+AGG | - | chr5.2:3653949-3653968 | MS.gene050376:intron | 30.0% | |
GAAATGGAAAAACAAGTACA+GGG | - | chr5.2:3653439-3653458 | MS.gene050376:CDS | 30.0% | |
GAAGGAAAGAAACAAATCAA+TGG | - | chr5.2:3655067-3655086 | MS.gene050376:intron | 30.0% | |
TACATAATCAGCAAAGTTCA+CGG | + | chr5.2:3651491-3651510 | None:intergenic | 30.0% | |
TACCTTTGATGAAAATGAGA+AGG | - | chr5.2:3653621-3653640 | MS.gene050376:intron | 30.0% | |
TGAAGTTGCTTGAAATTTCA+GGG | - | chr5.2:3651605-3651624 | MS.gene050376:CDS | 30.0% | |
TTCATCTATGAAGAAGGAAA+AGG | - | chr5.2:3654665-3654684 | MS.gene050376:intron | 30.0% | |
TTCTGATGTAAATCATGCAT+CGG | + | chr5.2:3652422-3652441 | None:intergenic | 30.0% | |
TTGTAAAGGAAAGCAAAAGA+GGG | - | chr5.2:3652642-3652661 | MS.gene050376:CDS | 30.0% | |
! | AGTTTGTAATTCAGGTTTCA+TGG | + | chr5.2:3654817-3654836 | None:intergenic | 30.0% |
! | ATATTTCAGGTGTTACAATC+AGG | - | chr5.2:3651153-3651172 | MS.gene050376:CDS | 30.0% |
! | CTGAAGAGTTTTTAATGATG+TGG | - | chr5.2:3651820-3651839 | MS.gene050376:CDS | 30.0% |
! | CTTTATTTCACTCTTTAGCT+GGG | + | chr5.2:3654274-3654293 | None:intergenic | 30.0% |
! | TATTTCAGGTGTTACAATCA+GGG | - | chr5.2:3651154-3651173 | MS.gene050376:CDS | 30.0% |
! | TCTGAAACATTGTTACATCA+AGG | - | chr5.2:3654024-3654043 | MS.gene050376:intron | 30.0% |
! | TCTTTATTTCACTCTTTAGC+TGG | + | chr5.2:3654275-3654294 | None:intergenic | 30.0% |
! | TGATGAAGATCAAAAAGCAT+TGG | - | chr5.2:3653045-3653064 | MS.gene050376:CDS | 30.0% |
! | TTTTAGATCCATCAGAAAGT+TGG | + | chr5.2:3654356-3654375 | None:intergenic | 30.0% |
!! | ATTACAAACTTAGTCTTGCT+TGG | - | chr5.2:3654827-3654846 | MS.gene050376:intron | 30.0% |
!! | CAAATTCAAAGGTACTACAA+AGG | - | chr5.2:3651742-3651761 | MS.gene050376:CDS | 30.0% |
!! | CATTTCAGGTTATACAAGAT+TGG | - | chr5.2:3651786-3651805 | MS.gene050376:CDS | 30.0% |
!! | CTTCACTCAAAATTTTGAGT+AGG | + | chr5.2:3651634-3651653 | None:intergenic | 30.0% |
!! | GTTTGGTGATGTAATATTTC+AGG | - | chr5.2:3651140-3651159 | MS.gene050376:CDS | 30.0% |
!! | TCTAATGTATTGGTTCTGTT+AGG | - | chr5.2:3650817-3650836 | MS.gene050376:CDS | 30.0% |
!! | TGTATTAGCATTTTTCAGTC+TGG | + | chr5.2:3653551-3653570 | None:intergenic | 30.0% |
!!! | AATTTTTTTGTTGATTGGGG+TGG | + | chr5.2:3654379-3654398 | None:intergenic | 30.0% |
!!! | CATTTTTTTCTTGCATTCTC+TGG | + | chr5.2:3651720-3651739 | None:intergenic | 30.0% |
!!! | CTTCACGTGTTTTTTACTTT+CGG | + | chr5.2:3652160-3652179 | None:intergenic | 30.0% |
AAAGTCAAAGGAAACTGCAT+TGG | - | chr5.2:3654629-3654648 | MS.gene050376:CDS | 35.0% | |
AACCCATATCAGAAGATTAG+AGG | - | chr5.2:3653414-3653433 | MS.gene050376:CDS | 35.0% | |
AAGAAATAGATTGGAACACG+CGG | - | chr5.2:3655004-3655023 | MS.gene050376:intron | 35.0% | |
AAGAGATTCAGGGATAGTAA+TGG | - | chr5.2:3654324-3654343 | MS.gene050376:CDS | 35.0% | |
AATTCGATGATAAGAGCTCA+AGG | - | chr5.2:3651902-3651921 | MS.gene050376:CDS | 35.0% | |
AGAACTTGACAATGTAACGT+CGG | + | chr5.2:3652264-3652283 | None:intergenic | 35.0% | |
AGACAGAATGTGACAATATC+AGG | - | chr5.2:3652717-3652736 | MS.gene050376:CDS | 35.0% | |
AGAGTTTCATCTCTAACTCT+TGG | + | chr5.2:3653006-3653025 | None:intergenic | 35.0% | |
AGTAAGCATTTCACTCATTC+AGG | - | chr5.2:3651978-3651997 | MS.gene050376:CDS | 35.0% | |
AGTATGGGTGATTCAACAAA+CGG | - | chr5.2:3652482-3652501 | MS.gene050376:CDS | 35.0% | |
AGTTAATAGGGATTTCTCTG+AGG | - | chr5.2:3653876-3653895 | MS.gene050376:CDS | 35.0% | |
ATAAACAACAGAACGTCTAG+TGG | - | chr5.2:3652236-3652255 | MS.gene050376:CDS | 35.0% | |
ATCCTGAACAACCAATTTGA+AGG | + | chr5.2:3654946-3654965 | None:intergenic | 35.0% | |
ATTGTTACATCAAGGAACTG+TGG | - | chr5.2:3654032-3654051 | MS.gene050376:intron | 35.0% | |
CAAGGAAGAAAAAGAAGAAG+AGG | - | chr5.2:3654140-3654159 | MS.gene050376:intron | 35.0% | |
CAATTCAATGCTACTAAGGT+AGG | - | chr5.2:3650670-3650689 | MS.gene050376:CDS | 35.0% | |
CATCAATGATATGAGGACAT+AGG | - | chr5.2:3654475-3654494 | MS.gene050376:CDS | 35.0% | |
CATTAACATGCCCTTCAAAT+TGG | - | chr5.2:3654932-3654951 | MS.gene050376:intron | 35.0% | |
CGAAACAGTCAAGTATTATC+AGG | - | chr5.2:3651287-3651306 | MS.gene050376:intron | 35.0% | |
CTACAGAAAAATCTAGTGGA+AGG | - | chr5.2:3653682-3653701 | MS.gene050376:intron | 35.0% | |
CTCCTCTAATCTTCTGATAT+GGG | + | chr5.2:3653419-3653438 | None:intergenic | 35.0% | |
GAATCTGGAAAAAGAACTCA+AGG | - | chr5.2:3653342-3653361 | MS.gene050376:CDS | 35.0% | |
GAGTTTCATCTCTAACTCTT+GGG | + | chr5.2:3653005-3653024 | None:intergenic | 35.0% | |
GCAAGAATCAAATGCTGAAT+TGG | - | chr5.2:3652889-3652908 | MS.gene050376:CDS | 35.0% | |
GCGAAATTGAAATGTATAGG+AGG | - | chr5.2:3653140-3653159 | MS.gene050376:CDS | 35.0% | |
GCTTCAATTCAATGCTACTA+AGG | - | chr5.2:3650666-3650685 | MS.gene050376:CDS | 35.0% | |
GCTTTCTCTAATCTCTTTGT+TGG | + | chr5.2:3651225-3651244 | None:intergenic | 35.0% | |
GGAAATGGAAAAACAAGTAC+AGG | - | chr5.2:3653438-3653457 | MS.gene050376:CDS | 35.0% | |
GTGAAGTTGCTTGAAATTTC+AGG | - | chr5.2:3651604-3651623 | MS.gene050376:CDS | 35.0% | |
TAAACAACAGAACGTCTAGT+GGG | - | chr5.2:3652237-3652256 | MS.gene050376:CDS | 35.0% | |
TACAAGAGAAAACAGCATTC+AGG | + | chr5.2:3654529-3654548 | None:intergenic | 35.0% | |
TAGACTATTGAAGTCAGAGT+TGG | - | chr5.2:3654164-3654183 | MS.gene050376:intron | 35.0% | |
TATTATCAGGATCCAAAGAC+CGG | - | chr5.2:3651300-3651319 | MS.gene050376:intron | 35.0% | |
TCCTCAGCATTCAAAAGAAA+TGG | - | chr5.2:3654407-3654426 | MS.gene050376:intron | 35.0% | |
TCCTGAACAACCAATTTGAA+GGG | + | chr5.2:3654945-3654964 | None:intergenic | 35.0% | |
TCGAAAATCAGAAGAAGCTT+GGG | - | chr5.2:3653848-3653867 | MS.gene050376:CDS | 35.0% | |
TGAAACTCACATTGAGAATC+TGG | - | chr5.2:3653327-3653346 | MS.gene050376:CDS | 35.0% | |
TGAAGCTGATATAGAAGCAA+TGG | - | chr5.2:3653465-3653484 | MS.gene050376:CDS | 35.0% | |
TGTTTCGTTCTTCAAAATGG+AGG | - | chr5.2:3650611-3650630 | MS.gene050376:CDS | 35.0% | |
TTCCTTCAATGACGACAATT+CGG | + | chr5.2:3655054-3655073 | None:intergenic | 35.0% | |
! | AAACCAGTTTGTTCCAGTTA+TGG | - | chr5.2:3652352-3652371 | MS.gene050376:CDS | 35.0% |
! | AGCCTTCTCATTTTCATCAA+AGG | + | chr5.2:3653626-3653645 | None:intergenic | 35.0% |
! | ATTTCAGGTGTTACAATCAG+GGG | - | chr5.2:3651155-3651174 | MS.gene050376:CDS | 35.0% |
! | CAGTTTCCTTTGACTTTATC+AGG | + | chr5.2:3654626-3654645 | None:intergenic | 35.0% |
! | CGTTCTGTTGTTTATTGCTT+TGG | + | chr5.2:3652231-3652250 | None:intergenic | 35.0% |
! | CTTTACAATTTGCTTCCTGA+GGG | + | chr5.2:3652630-3652649 | None:intergenic | 35.0% |
! | GTTCAGTTTTACCTCGTAAT+CGG | + | chr5.2:3653749-3653768 | None:intergenic | 35.0% |
!! | AAAGGTACTACAAAGGGAAT+TGG | - | chr5.2:3651749-3651768 | MS.gene050376:CDS | 35.0% |
!! | ATGGGTTTCTAGTACCTTAA+TGG | + | chr5.2:3653401-3653420 | None:intergenic | 35.0% |
!!! | AAAGTCACTTTTTGAGGATG+AGG | - | chr5.2:3654218-3654237 | MS.gene050376:intron | 35.0% |
!!! | AATTTTTGGGGTTATATGCC+AGG | - | chr5.2:3651432-3651451 | MS.gene050376:CDS | 35.0% |
!!! | ATTTTTGGGGTTATATGCCA+GGG | - | chr5.2:3651433-3651452 | MS.gene050376:CDS | 35.0% |
AAATTGTCGGTGGGAGAATT+CGG | - | chr5.2:3651260-3651279 | MS.gene050376:intron | 40.0% | |
AATGAGTCTCAAATTTGCCG+AGG | - | chr5.2:3655127-3655146 | MS.gene050376:intron | 40.0% | |
AATGGAGGAGTGAGAAGAAT+AGG | - | chr5.2:3650626-3650645 | MS.gene050376:CDS | 40.0% | |
AATGTATAGGAGGGACAAAG+AGG | - | chr5.2:3653150-3653169 | MS.gene050376:CDS | 40.0% | |
AGCTTGGGGAACAAGTTAAT+AGG | - | chr5.2:3653863-3653882 | MS.gene050376:CDS | 40.0% | |
AGTTCAGATACAGCAGATGT+TGG | - | chr5.2:3653798-3653817 | MS.gene050376:intron | 40.0% | |
ATCACCATGAGAATTCCTGA+TGG | + | chr5.2:3651545-3651564 | None:intergenic | 40.0% | |
ATCCTGTTAAGCAGAGAAAC+AGG | + | chr5.2:3652201-3652220 | None:intergenic | 40.0% | |
CACAATTGCGTCATTGAAGA+AGG | - | chr5.2:3654074-3654093 | MS.gene050376:CDS | 40.0% | |
CAGAAGATTAGAGGAGGAAA+TGG | - | chr5.2:3653423-3653442 | MS.gene050376:CDS | 40.0% | |
CCATATCAGAAGATTAGAGG+AGG | - | chr5.2:3653417-3653436 | MS.gene050376:CDS | 40.0% | |
CCTCAGGAAGCAAATTGTAA+AGG | - | chr5.2:3652628-3652647 | MS.gene050376:CDS | 40.0% | |
CCTCCTCTAATCTTCTGATA+TGG | + | chr5.2:3653420-3653439 | None:intergenic | 40.0% | |
CGAAAATCAGAAGAAGCTTG+GGG | - | chr5.2:3653849-3653868 | MS.gene050376:CDS | 40.0% | |
CGGTTCAAGATGGAAATTGT+CGG | - | chr5.2:3651247-3651266 | MS.gene050376:intron | 40.0% | |
CTAGCTTATGTACAAGCTTG+TGG | + | chr5.2:3653234-3653253 | None:intergenic | 40.0% | |
CTCGAAAATCAGAAGAAGCT+TGG | - | chr5.2:3653847-3653866 | MS.gene050376:CDS | 40.0% | |
GACACTCTTGAGGTTTCTTA+CGG | + | chr5.2:3655183-3655202 | None:intergenic | 40.0% | |
GAGGAGATGAACACTCATAT+TGG | + | chr5.2:3653288-3653307 | None:intergenic | 40.0% | |
GATAGATTGCGTACTGAGTA+AGG | + | chr5.2:3652095-3652114 | None:intergenic | 40.0% | |
GCGTCTACAGAAAAATCTAG+TGG | - | chr5.2:3653678-3653697 | MS.gene050376:intron | 40.0% | |
GCTTGGGGAACAAGTTAATA+GGG | - | chr5.2:3653864-3653883 | MS.gene050376:CDS | 40.0% | |
TAGTTGACTGAAGCTCTTCT+TGG | + | chr5.2:3653723-3653742 | None:intergenic | 40.0% | |
TCAAGATGGAAATTGTCGGT+GGG | - | chr5.2:3651251-3651270 | MS.gene050376:intron | 40.0% | |
TCAAGGAACCAATTCAGCAA+CGG | - | chr5.2:3651919-3651938 | MS.gene050376:CDS | 40.0% | |
TCAATAGTTCCTGGTGACAT+TGG | - | chr5.2:3651195-3651214 | MS.gene050376:intron | 40.0% | |
TCAATGTCATTCATAGCAGC+AGG | + | chr5.2:3653310-3653329 | None:intergenic | 40.0% | |
TCACCATGAGAATTCCTGAT+GGG | + | chr5.2:3651544-3651563 | None:intergenic | 40.0% | |
TCATTTGCATTGAGAGTCTC+TGG | + | chr5.2:3653597-3653616 | None:intergenic | 40.0% | |
TGAGTCTCTCAATCTCCAAT+GGG | + | chr5.2:3652550-3652569 | None:intergenic | 40.0% | |
TGTTTAACTGTTCCTGCAGT+TGG | + | chr5.2:3653264-3653283 | None:intergenic | 40.0% | |
TTCAAGATGGAAATTGTCGG+TGG | - | chr5.2:3651250-3651269 | MS.gene050376:intron | 40.0% | |
TTCTCAAAATGCCCTTTCCA+AGG | - | chr5.2:3652505-3652524 | MS.gene050376:CDS | 40.0% | |
TTGAGTCTCTCAATCTCCAA+TGG | + | chr5.2:3652551-3652570 | None:intergenic | 40.0% | |
TTGGGAACTTTCCTTGGAAA+GGG | + | chr5.2:3652519-3652538 | None:intergenic | 40.0% | |
TTTCTCAGTCCAATTTCGCA+GGG | + | chr5.2:3652311-3652330 | None:intergenic | 40.0% | |
! | AGCATTGGATGATCTTGTCA+AGG | - | chr5.2:3653060-3653079 | MS.gene050376:CDS | 40.0% |
! | CAGCATTGAGAAGAGATTCA+GGG | - | chr5.2:3654314-3654333 | MS.gene050376:CDS | 40.0% |
! | CCTTTACAATTTGCTTCCTG+AGG | + | chr5.2:3652631-3652650 | None:intergenic | 40.0% |
! | GCCATTTCTTTTGAATGCTG+AGG | + | chr5.2:3654411-3654430 | None:intergenic | 40.0% |
! | TTCCTGTTTCTCTGCTTAAC+AGG | - | chr5.2:3652196-3652215 | MS.gene050376:CDS | 40.0% |
! | TTCTTTTGAATGCTGAGGAC+TGG | + | chr5.2:3654406-3654425 | None:intergenic | 40.0% |
! | TTTTCTCAGTCCAATTTCGC+AGG | + | chr5.2:3652312-3652331 | None:intergenic | 40.0% |
!! | AAACCTCAAGAGTGTCCATA+AGG | - | chr5.2:3655187-3655206 | MS.gene050376:CDS | 40.0% |
!! | AACCTCAAGAGTGTCCATAA+GGG | - | chr5.2:3655188-3655207 | MS.gene050376:CDS | 40.0% |
!! | AACTGGAACAAACTGGTTTG+TGG | + | chr5.2:3652351-3652370 | None:intergenic | 40.0% |
!! | ATTGGTTCTGTTAGGTTCTG+AGG | - | chr5.2:3650825-3650844 | MS.gene050376:CDS | 40.0% |
!! | TCGGAATGTTACTTTACACG+AGG | - | chr5.2:3654737-3654756 | MS.gene050376:intron | 40.0% |
!! | TTGGTGTTGTCAATAGTTCC+TGG | - | chr5.2:3651186-3651205 | MS.gene050376:intron | 40.0% |
!! | TTGGTTCTGTTAGGTTCTGA+GGG | - | chr5.2:3650826-3650845 | MS.gene050376:CDS | 40.0% |
!!! | CTTCTGATTTTCGAGTTGCA+TGG | + | chr5.2:3653842-3653861 | None:intergenic | 40.0% |
!!! | TCGTTGATTTTTCCGGTCTT+TGG | + | chr5.2:3651315-3651334 | None:intergenic | 40.0% |
!!! | TTTTTGGGGTTATATGCCAG+GGG | - | chr5.2:3651434-3651453 | MS.gene050376:CDS | 40.0% |
AAAGGAAAGCAAAAGAGGGC+AGG | - | chr5.2:3652646-3652665 | MS.gene050376:CDS | 45.0% | |
AACAGGTCACAGTTGGAAAG+TGG | - | chr5.2:3652776-3652795 | MS.gene050376:CDS | 45.0% | |
ACAATCAGGGGTAGATGCAT+TGG | - | chr5.2:3651167-3651186 | MS.gene050376:CDS | 45.0% | |
ACGATGCCAAAGTGAGAAAC+AGG | - | chr5.2:3652759-3652778 | MS.gene050376:CDS | 45.0% | |
AGCAGCATTTGGAGATTCTG+CGG | + | chr5.2:3652384-3652403 | None:intergenic | 45.0% | |
AGTGAGAAACAGGTCACAGT+TGG | - | chr5.2:3652769-3652788 | MS.gene050376:CDS | 45.0% | |
ATGGGAAGAGAGACATGAGA+GGG | + | chr5.2:3651526-3651545 | None:intergenic | 45.0% | |
ATGTCATTCATAGCAGCAGG+AGG | + | chr5.2:3653307-3653326 | None:intergenic | 45.0% | |
CCTGAATCTCTTCTCAATGC+TGG | + | chr5.2:3654316-3654335 | None:intergenic | 45.0% | |
CTCAAGCAAGTGTGTCTCTT+TGG | + | chr5.2:3653098-3653117 | None:intergenic | 45.0% | |
CTTCCCATCAGGAATTCTCA+TGG | - | chr5.2:3651538-3651557 | MS.gene050376:CDS | 45.0% | |
CTTGGGAACTTTCCTTGGAA+AGG | + | chr5.2:3652520-3652539 | None:intergenic | 45.0% | |
GACCGAATTGTCGTCATTGA+AGG | - | chr5.2:3655049-3655068 | MS.gene050376:intron | 45.0% | |
GAGAAAGCTACGGTTCAAGA+TGG | - | chr5.2:3651237-3651256 | MS.gene050376:intron | 45.0% | |
GAGCCATAACTGGAACAAAC+TGG | + | chr5.2:3652358-3652377 | None:intergenic | 45.0% | |
GAGTCTCTCAATCTCCAATG+GGG | + | chr5.2:3652549-3652568 | None:intergenic | 45.0% | |
GCCCTTCAAATTGGTTGTTC+AGG | - | chr5.2:3654941-3654960 | MS.gene050376:intron | 45.0% | |
GGAACTCCAGAGCAGAATTA+TGG | - | chr5.2:3654686-3654705 | MS.gene050376:intron | 45.0% | |
GTCAACTAAAGCCGATTACG+AGG | - | chr5.2:3653735-3653754 | MS.gene050376:intron | 45.0% | |
GTTGATACTCCCTGCGAAAT+TGG | - | chr5.2:3652299-3652318 | MS.gene050376:CDS | 45.0% | |
TACAGCTGAAAGGCTTCAAG+AGG | - | chr5.2:3653567-3653586 | MS.gene050376:CDS | 45.0% | |
TAGACGCAGTTCACTTGCTT+CGG | + | chr5.2:3653665-3653684 | None:intergenic | 45.0% | |
TATGGAGCTGGAGAACAAAG+TGG | - | chr5.2:3654704-3654723 | MS.gene050376:intron | 45.0% | |
TCAGAGCTCGGGTTAAGTAT+GGG | - | chr5.2:3652467-3652486 | MS.gene050376:CDS | 45.0% | |
TCAGATACAGCAGATGTTGG+TGG | - | chr5.2:3653801-3653820 | MS.gene050376:intron | 45.0% | |
TCTGCTCCAACATTTCTTCG+AGG | + | chr5.2:3652931-3652950 | None:intergenic | 45.0% | |
TGCGTCATTGAAGAAGGAAG+CGG | - | chr5.2:3654080-3654099 | MS.gene050376:CDS | 45.0% | |
TGTATCGCGTTCGTGTCTAT+TGG | + | chr5.2:3652978-3652997 | None:intergenic | 45.0% | |
TTATCAAAAGCTAGCGCCGT+CGG | - | chr5.2:3651457-3651476 | MS.gene050376:CDS | 45.0% | |
TTCCAAGGAAAGTTCCCAAG+AGG | - | chr5.2:3652520-3652539 | MS.gene050376:CDS | 45.0% | |
TTGTCTTTCACCTTCGACCT+CGG | + | chr5.2:3655147-3655166 | None:intergenic | 45.0% | |
! | CCAGCATTGAGAAGAGATTC+AGG | - | chr5.2:3654313-3654332 | MS.gene050376:CDS | 45.0% |
! | CTGTGACCTGTTTCTCACTT+TGG | + | chr5.2:3652768-3652787 | None:intergenic | 45.0% |
! | GAGGCATTAACAGCAGCATT+TGG | + | chr5.2:3652395-3652414 | None:intergenic | 45.0% |
! | TCAAGTTCTGATGACAGCTC+TGG | - | chr5.2:3652275-3652294 | MS.gene050376:CDS | 45.0% |
!! | CAAAGCTGAACTTGCTGCTT+TGG | - | chr5.2:3652568-3652587 | MS.gene050376:CDS | 45.0% |
!! | GAACAAACTGGTTTGTGGTG+GGG | + | chr5.2:3652346-3652365 | None:intergenic | 45.0% |
!! | GGAACAAACTGGTTTGTGGT+GGG | + | chr5.2:3652347-3652366 | None:intergenic | 45.0% |
!! | TAAATCATGCATCGGTGTCG+AGG | + | chr5.2:3652414-3652433 | None:intergenic | 45.0% |
!! | TGGAACAAACTGGTTTGTGG+TGG | + | chr5.2:3652348-3652367 | None:intergenic | 45.0% |
!! | AAAAAAACTATTATTAATAA+AGG | + | chr5.2:3650925-3650944 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTATTCTTAA+TGG | - | chr5.2:3651061-3651080 | MS.gene050376:intron | 5.0% |
AAGAGGGCAGGATCTCATGA+AGG | - | chr5.2:3652658-3652677 | MS.gene050376:CDS | 50.0% | |
ACATGGAACTACAGACCCTC+AGG | - | chr5.2:3652612-3652631 | MS.gene050376:CDS | 50.0% | |
AGAACTCAAGGAGCAGTCAG+AGG | - | chr5.2:3653354-3653373 | MS.gene050376:CDS | 50.0% | |
AGAGACATGAGAGGGCTTTG+TGG | + | chr5.2:3651518-3651537 | None:intergenic | 50.0% | |
AGCCCTTATGGACACTCTTG+AGG | + | chr5.2:3655193-3655212 | None:intergenic | 50.0% | |
CAGGTCTTTCCACAAACGCA+TGG | - | chr5.2:3652736-3652755 | MS.gene050376:CDS | 50.0% | |
CATTTCTTCGAGGTCCTGCA+CGG | + | chr5.2:3652921-3652940 | None:intergenic | 50.0% | |
CCAGAGCAGAATTATGGAGC+TGG | - | chr5.2:3654692-3654711 | MS.gene050376:intron | 50.0% | |
CCAGCTCCATAATTCTGCTC+TGG | + | chr5.2:3654695-3654714 | None:intergenic | 50.0% | |
CTCAAATTTGCCGAGGTCGA+AGG | - | chr5.2:3655134-3655153 | MS.gene050376:intron | 50.0% | |
CTCAGAGCTCGGGTTAAGTA+TGG | - | chr5.2:3652466-3652485 | MS.gene050376:CDS | 50.0% | |
CTCATGTCTCTCTTCCCATC+AGG | - | chr5.2:3651527-3651546 | MS.gene050376:CDS | 50.0% | |
CTGTATCGCCGTTGCTGAAT+TGG | + | chr5.2:3651930-3651949 | None:intergenic | 50.0% | |
GATGGGAAGAGAGACATGAG+AGG | + | chr5.2:3651527-3651546 | None:intergenic | 50.0% | |
GCAGGACCTCGAAGAAATGT+TGG | - | chr5.2:3652922-3652941 | MS.gene050376:CDS | 50.0% | |
GCAGGGCCTGATAAAGTCAA+AGG | - | chr5.2:3654617-3654636 | MS.gene050376:CDS | 50.0% | |
GGACGCAACCAACTTTCTGA+TGG | - | chr5.2:3654345-3654364 | MS.gene050376:CDS | 50.0% | |
GGTCTTTCGCAATGCTTCCT+CGG | + | chr5.2:3653530-3653549 | None:intergenic | 50.0% | |
TATCAAAAGCTAGCGCCGTC+GGG | - | chr5.2:3651458-3651477 | MS.gene050376:CDS | 50.0% | |
TGCCTCTTGGGAACTTTCCT+TGG | + | chr5.2:3652525-3652544 | None:intergenic | 50.0% | |
TGCTTCGGTCAATGCTCTCA+TGG | + | chr5.2:3653650-3653669 | None:intergenic | 50.0% | |
! | CACGCGGACAATAGTCTTAG+TGG | - | chr5.2:3655020-3655039 | MS.gene050376:intron | 50.0% |
! | TCGTCATCTAGCTCAGAGCT+CGG | - | chr5.2:3652455-3652474 | MS.gene050376:CDS | 50.0% |
! | TGAATTGGTTCTTGCCGTGC+AGG | - | chr5.2:3652904-3652923 | MS.gene050376:CDS | 50.0% |
!! | GTTGGTCTTCCAATGTCACC+AGG | + | chr5.2:3651207-3651226 | None:intergenic | 50.0% |
!!! | CGCTAGCTTTTGATAACCCC+TGG | + | chr5.2:3651453-3651472 | None:intergenic | 50.0% |
ATCAAAAGCTAGCGCCGTCG+GGG | - | chr5.2:3651459-3651478 | MS.gene050376:CDS | 55.0% | |
CTCCAATGGGGATGCCTCTT+GGG | + | chr5.2:3652537-3652556 | None:intergenic | 55.0% | |
GCACATGGATGTGTCGGACA+TGG | - | chr5.2:3652595-3652614 | MS.gene050376:CDS | 55.0% | |
GCTAGAGCAAAGCCAACTGC+AGG | - | chr5.2:3653249-3653268 | MS.gene050376:CDS | 55.0% | |
GTTCACGGAAACATCCCCGA+CGG | + | chr5.2:3651476-3651495 | None:intergenic | 55.0% | |
TCTCCAATGGGGATGCCTCT+TGG | + | chr5.2:3652538-3652557 | None:intergenic | 55.0% | |
TGGCATCGTCCATGCGTTTG+TGG | + | chr5.2:3652748-3652767 | None:intergenic | 55.0% | |
TTCGCAATGCTTCCTCGGCT+TGG | + | chr5.2:3653525-3653544 | None:intergenic | 55.0% | |
! | CGTCATCTAGCTCAGAGCTC+GGG | - | chr5.2:3652456-3652475 | MS.gene050376:CDS | 55.0% |
!! | CAATGCTTCCTCGGCTTGGA+TGG | + | chr5.2:3653521-3653540 | None:intergenic | 55.0% |
!! | CTGAACTTGCTGCTTTGGCG+AGG | - | chr5.2:3652573-3652592 | MS.gene050376:CDS | 55.0% |
!! | TTCCCAAGAGGCATCCCCAT+TGG | - | chr5.2:3652532-3652551 | MS.gene050376:CDS | 55.0% |
GCAAAGAGCCATCCAAGCCG+AGG | - | chr5.2:3653510-3653529 | MS.gene050376:CDS | 60.0% | |
GGCGAGGCACATGGATGTGT+CGG | - | chr5.2:3652589-3652608 | MS.gene050376:CDS | 60.0% | |
TCTGCGGCACGAGCCATAAC+TGG | + | chr5.2:3652368-3652387 | None:intergenic | 60.0% | |
!! | TGCTGCTTTGGCGAGGCACA+TGG | - | chr5.2:3652580-3652599 | MS.gene050376:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 3650610 | 3655214 | 3650610 | ID=MS.gene050376 |
chr5.2 | mRNA | 3650610 | 3655214 | 3650610 | ID=MS.gene050376.t1;Parent=MS.gene050376 |
chr5.2 | exon | 3655137 | 3655214 | 3655137 | ID=MS.gene050376.t1.exon1;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3655137 | 3655214 | 3655137 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3654462 | 3654662 | 3654462 | ID=MS.gene050376.t1.exon2;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3654462 | 3654662 | 3654462 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3654248 | 3654370 | 3654248 | ID=MS.gene050376.t1.exon3;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3654248 | 3654370 | 3654248 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3654072 | 3654115 | 3654072 | ID=MS.gene050376.t1.exon4;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3654072 | 3654115 | 3654072 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3653846 | 3653954 | 3653846 | ID=MS.gene050376.t1.exon5;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3653846 | 3653954 | 3653846 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3651363 | 3653606 | 3651363 | ID=MS.gene050376.t1.exon6;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3651363 | 3653606 | 3651363 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3651066 | 3651203 | 3651066 | ID=MS.gene050376.t1.exon7;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3651066 | 3651203 | 3651066 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
chr5.2 | exon | 3650610 | 3650861 | 3650610 | ID=MS.gene050376.t1.exon8;Parent=MS.gene050376.t1 |
chr5.2 | CDS | 3650610 | 3650861 | 3650610 | ID=cds.MS.gene050376.t1;Parent=MS.gene050376.t1 |
Gene Sequence |
Protein sequence |