Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38329.t1 | XP_013448322.1 | 77.3 | 198 | 42 | 1 | 1 | 198 | 1 | 195 | 1.40E-77 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38329.t1 | A2YGR5 | 48.4 | 95 | 49 | 0 | 104 | 198 | 132 | 226 | 8.1e-18 | 92.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38329.t1 | A0A072TXZ6 | 77.3 | 198 | 42 | 1 | 1 | 198 | 1 | 195 | 1.0e-77 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38329.t1 | TF | SBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053383 | MS.gene38329 | 0.807294 | 5.42E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38329.t1 | MTR_7g444860 | 87.940 | 199 | 21 | 1 | 1 | 199 | 1 | 196 | 7.11e-112 | 322 |
| MS.gene38329.t1 | MTR_3g085180 | 50.000 | 102 | 47 | 2 | 98 | 199 | 115 | 212 | 1.33e-24 | 100 |
| MS.gene38329.t1 | MTR_1g053715 | 46.465 | 99 | 50 | 1 | 104 | 199 | 23 | 121 | 1.26e-19 | 85.5 |
| MS.gene38329.t1 | MTR_3g099080 | 56.716 | 67 | 28 | 1 | 134 | 199 | 79 | 145 | 1.44e-19 | 85.9 |
| MS.gene38329.t1 | MTR_7g092930 | 43.434 | 99 | 53 | 1 | 104 | 199 | 17 | 115 | 2.45e-19 | 84.7 |
| MS.gene38329.t1 | MTR_8g005960 | 62.712 | 59 | 22 | 0 | 145 | 203 | 180 | 238 | 1.69e-18 | 82.4 |
| MS.gene38329.t1 | MTR_2g078770 | 53.521 | 71 | 32 | 1 | 129 | 199 | 36 | 105 | 3.00e-18 | 78.6 |
| MS.gene38329.t1 | MTR_4g088555 | 66.667 | 48 | 16 | 0 | 152 | 199 | 63 | 110 | 4.20e-18 | 77.8 |
| MS.gene38329.t1 | MTR_7g110320 | 52.439 | 82 | 31 | 2 | 119 | 199 | 118 | 192 | 5.21e-18 | 82.0 |
| MS.gene38329.t1 | MTR_7g110320 | 52.439 | 82 | 31 | 2 | 119 | 199 | 118 | 192 | 6.69e-18 | 81.6 |
| MS.gene38329.t1 | MTR_4g109770 | 44.000 | 100 | 52 | 2 | 101 | 199 | 74 | 170 | 8.27e-18 | 81.3 |
| MS.gene38329.t1 | MTR_2g461920 | 61.111 | 54 | 21 | 0 | 146 | 199 | 165 | 218 | 1.43e-17 | 80.5 |
| MS.gene38329.t1 | MTR_8g463140 | 68.750 | 48 | 15 | 0 | 152 | 199 | 65 | 112 | 1.47e-17 | 77.0 |
| MS.gene38329.t1 | MTR_8g080670 | 41.284 | 109 | 41 | 2 | 99 | 199 | 116 | 209 | 2.23e-17 | 79.7 |
| MS.gene38329.t1 | MTR_5g046670 | 41.905 | 105 | 55 | 2 | 98 | 199 | 190 | 291 | 2.94e-17 | 79.7 |
| MS.gene38329.t1 | MTR_8g080690 | 41.176 | 102 | 58 | 1 | 98 | 199 | 99 | 198 | 4.56e-17 | 78.6 |
| MS.gene38329.t1 | MTR_8g096780 | 53.226 | 62 | 29 | 0 | 138 | 199 | 85 | 146 | 7.66e-17 | 78.2 |
| MS.gene38329.t1 | MTR_2g014200 | 56.452 | 62 | 26 | 1 | 138 | 199 | 51 | 111 | 9.40e-17 | 73.9 |
| MS.gene38329.t1 | MTR_8g080680 | 35.338 | 133 | 55 | 4 | 87 | 199 | 58 | 179 | 1.98e-16 | 77.0 |
| MS.gene38329.t1 | MTR_2g046550 | 51.282 | 78 | 31 | 2 | 122 | 199 | 116 | 186 | 6.16e-16 | 76.3 |
| MS.gene38329.t1 | MTR_7g028740 | 64.583 | 48 | 17 | 0 | 152 | 199 | 77 | 124 | 1.05e-15 | 74.7 |
| MS.gene38329.t1 | MTR_1g035010 | 64.583 | 48 | 17 | 0 | 152 | 199 | 104 | 151 | 3.31e-14 | 71.2 |
| MS.gene38329.t1 | MTR_1g086250 | 48.000 | 75 | 30 | 1 | 125 | 199 | 129 | 194 | 6.75e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 1.20e-23 | 96.7 |
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 2.60e-23 | 96.3 |
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 2.60e-23 | 96.3 |
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 2.60e-23 | 96.3 |
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 2.60e-23 | 96.3 |
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 2.60e-23 | 96.3 |
| MS.gene38329.t1 | AT1G27370 | 48.980 | 98 | 49 | 1 | 103 | 199 | 126 | 223 | 2.60e-23 | 96.3 |
| MS.gene38329.t1 | AT1G27360 | 49.485 | 97 | 49 | 0 | 103 | 199 | 126 | 222 | 2.03e-22 | 94.0 |
| MS.gene38329.t1 | AT1G27360 | 49.485 | 97 | 49 | 0 | 103 | 199 | 126 | 222 | 2.03e-22 | 94.0 |
| MS.gene38329.t1 | AT1G27360 | 49.485 | 97 | 49 | 0 | 103 | 199 | 126 | 222 | 2.03e-22 | 94.0 |
| MS.gene38329.t1 | AT1G27360 | 49.485 | 97 | 49 | 0 | 103 | 199 | 126 | 222 | 2.03e-22 | 94.0 |
| MS.gene38329.t1 | AT5G43270 | 47.115 | 104 | 48 | 2 | 104 | 203 | 120 | 220 | 3.32e-22 | 93.6 |
| MS.gene38329.t1 | AT5G43270 | 47.115 | 104 | 48 | 2 | 104 | 203 | 120 | 220 | 3.32e-22 | 93.6 |
| MS.gene38329.t1 | AT5G43270 | 47.115 | 104 | 48 | 2 | 104 | 203 | 120 | 220 | 3.32e-22 | 93.6 |
| MS.gene38329.t1 | AT1G02065 | 44.231 | 104 | 45 | 3 | 104 | 205 | 149 | 241 | 3.41e-20 | 85.5 |
| MS.gene38329.t1 | AT1G02065 | 67.308 | 52 | 17 | 0 | 148 | 199 | 184 | 235 | 9.49e-19 | 83.2 |
| MS.gene38329.t1 | AT3G57920 | 45.833 | 96 | 36 | 2 | 104 | 199 | 27 | 106 | 3.80e-18 | 81.6 |
| MS.gene38329.t1 | AT2G42200 | 64.706 | 51 | 18 | 0 | 149 | 199 | 71 | 121 | 1.06e-17 | 80.5 |
| MS.gene38329.t1 | AT2G33810 | 60.417 | 48 | 19 | 0 | 152 | 199 | 54 | 101 | 6.65e-17 | 74.3 |
| MS.gene38329.t1 | AT3G60030 | 55.224 | 67 | 29 | 1 | 134 | 199 | 108 | 174 | 7.51e-17 | 79.0 |
| MS.gene38329.t1 | AT1G53160 | 64.583 | 48 | 17 | 0 | 152 | 199 | 54 | 101 | 4.28e-16 | 73.2 |
| MS.gene38329.t1 | AT1G53160 | 64.583 | 48 | 17 | 0 | 152 | 199 | 54 | 101 | 5.49e-16 | 72.8 |
| MS.gene38329.t1 | AT1G53160 | 64.583 | 48 | 17 | 0 | 152 | 199 | 54 | 101 | 5.49e-16 | 72.8 |
| MS.gene38329.t1 | AT3G15270 | 62.500 | 48 | 18 | 0 | 152 | 199 | 63 | 110 | 6.19e-16 | 72.8 |
| MS.gene38329.t1 | AT1G69170 | 42.529 | 87 | 37 | 1 | 113 | 199 | 98 | 171 | 1.05e-15 | 75.1 |
| MS.gene38329.t1 | AT5G50670 | 54.545 | 55 | 25 | 0 | 145 | 199 | 94 | 148 | 2.07e-15 | 73.9 |
| MS.gene38329.t1 | AT5G50670 | 54.545 | 55 | 25 | 0 | 145 | 199 | 94 | 148 | 2.07e-15 | 73.9 |
| MS.gene38329.t1 | AT5G50570 | 54.545 | 55 | 25 | 0 | 145 | 199 | 94 | 148 | 2.07e-15 | 73.9 |
| MS.gene38329.t1 | AT5G50570 | 54.545 | 55 | 25 | 0 | 145 | 199 | 94 | 148 | 2.07e-15 | 73.9 |
| MS.gene38329.t1 | AT2G47070 | 62.500 | 48 | 18 | 0 | 152 | 199 | 106 | 153 | 3.21e-15 | 73.9 |
| MS.gene38329.t1 | AT1G76580 | 62.264 | 53 | 20 | 0 | 151 | 203 | 113 | 165 | 3.91e-15 | 73.6 |
| MS.gene38329.t1 | AT1G76580 | 65.306 | 49 | 17 | 0 | 151 | 199 | 113 | 161 | 4.01e-15 | 73.9 |
| MS.gene38329.t1 | AT1G20980 | 63.462 | 52 | 19 | 0 | 152 | 203 | 120 | 171 | 4.51e-15 | 73.6 |
| MS.gene38329.t1 | AT1G76580 | 65.306 | 49 | 17 | 0 | 151 | 199 | 113 | 161 | 7.27e-15 | 72.8 |
Find 72 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGACGGCGGCGGTGG+TGG | 0.238002 | 7.3:+57647050 | MS.gene38329:CDS |
| GATGTGAGTGGTGGTGGTGG+GGG | 0.246735 | 7.3:+57646982 | MS.gene38329:CDS |
| ATGTGAGTGGTGGTGGTGGG+GGG | 0.286741 | 7.3:+57646983 | MS.gene38329:CDS |
| GGATGTGAGTGGTGGTGGTG+GGG | 0.287064 | 7.3:+57646981 | MS.gene38329:CDS |
| AAACCCAACACCACAACTTT+TGG | 0.295801 | 7.3:-57647183 | None:intergenic |
| AGGATGTGAGTGGTGGTGGT+GGG | 0.362480 | 7.3:+57646980 | MS.gene38329:CDS |
| TGGTGGGAAGACGGCGGCGG+TGG | 0.367065 | 7.3:+57647047 | MS.gene38329:CDS |
| GAGGATGTGAGTGGTGGTGG+TGG | 0.374532 | 7.3:+57646979 | MS.gene38329:CDS |
| CACCTCACATGTTTGAAGTT+GGG | 0.387603 | 7.3:+57646940 | MS.gene38329:CDS |
| GGCGGTGGTGGGTGGTTATA+CGG | 0.389810 | 7.3:+57647062 | MS.gene38329:CDS |
| GGAGGATATTGTGGTGGTGG+TGG | 0.392988 | 7.3:+57647030 | MS.gene38329:CDS |
| AAGACGGCGGCGGTGGTGGG+TGG | 0.396016 | 7.3:+57647054 | MS.gene38329:CDS |
| AAAAGTTGTGGTGTTGGGTT+TGG | 0.400118 | 7.3:+57647185 | MS.gene38329:CDS |
| GTGACAAGGTGTCAGGTGGA+TGG | 0.400175 | 7.3:+57647087 | MS.gene38329:CDS |
| TTTGAGGATGTGAGTGGTGG+TGG | 0.427873 | 7.3:+57646976 | MS.gene38329:CDS |
| GGGAAGACGGCGGCGGTGGT+GGG | 0.428096 | 7.3:+57647051 | MS.gene38329:CDS |
| GCACCAAAAGTTGTGGTGTT+GGG | 0.429036 | 7.3:+57647180 | MS.gene38329:CDS |
| CGTCGCCTTCGTTCTGAGGC+AGG | 0.441947 | 7.3:-57646855 | None:intergenic |
| AAACATGTGAGGTGTGGATC+AGG | 0.445259 | 7.3:-57646931 | None:intergenic |
| CGTTATTGCTAGTATTACTT+TGG | 0.445973 | 7.3:-57646684 | None:intergenic |
| ATACGGTGGAGGTGTGTCTC+GGG | 0.452355 | 7.3:+57646897 | MS.gene38329:CDS |
| ACACCTCACATGTTTGAAGT+TGG | 0.453165 | 7.3:+57646939 | MS.gene38329:CDS |
| CATGTTTGAAGTTGGGGAAG+AGG | 0.460346 | 7.3:+57646947 | MS.gene38329:CDS |
| CATACGGTGGAGGTGTGTCT+CGG | 0.463683 | 7.3:+57646896 | MS.gene38329:CDS |
| ATATAAACAAACATGGACTT+TGG | 0.464767 | 7.3:+57646631 | None:intergenic |
| TAGCTAGACCTGCCTCGTTA+CGG | 0.470096 | 7.3:-57646819 | None:intergenic |
| GGGCTGGCTGGGGAGAAGAA+AGG | 0.471082 | 7.3:+57647003 | MS.gene38329:CDS |
| GATTCTGTCAACAGTGTAGC+AGG | 0.478919 | 7.3:+57647214 | MS.gene38329:CDS |
| GGCACCAAAAGTTGTGGTGT+TGG | 0.478965 | 7.3:+57647179 | MS.gene38329:CDS |
| GGCTGGCTGGGGAGAAGAAA+GGG | 0.481722 | 7.3:+57647004 | MS.gene38329:CDS |
| TACGGCGGTGACAAGGTGTC+AGG | 0.483370 | 7.3:+57647080 | MS.gene38329:CDS |
| ACCTGCCTCGTTACGGTTGG+CGG | 0.491349 | 7.3:-57646812 | None:intergenic |
| CAAAGTAATACTAGCAATAA+CGG | 0.492833 | 7.3:+57646685 | MS.gene38329:CDS |
| ACCTCACATGTTTGAAGTTG+GGG | 0.495007 | 7.3:+57646941 | MS.gene38329:CDS |
| TGGTGGTGGGAAGACGGCGG+CGG | 0.500366 | 7.3:+57647044 | MS.gene38329:CDS |
| GCCGCCAACCGTAACGAGGC+AGG | 0.504436 | 7.3:+57646811 | MS.gene38329:CDS |
| TGAATGCTAAGGAGTATCAT+AGG | 0.506629 | 7.3:+57647127 | MS.gene38329:CDS |
| GGAGTATCATAGGAGACATA+AGG | 0.511196 | 7.3:+57647137 | MS.gene38329:CDS |
| GGTTTGTGAGATTCATTCAA+AGG | 0.515124 | 7.3:+57647158 | MS.gene38329:CDS |
| TTGTGGTGGTGGTGGGAAGA+CGG | 0.516504 | 7.3:+57647038 | MS.gene38329:CDS |
| CGTCCGTCGCCTTCGTTCTG+AGG | 0.519896 | 7.3:-57646859 | None:intergenic |
| GAGGATATTGTGGTGGTGGT+GGG | 0.521993 | 7.3:+57647031 | MS.gene38329:CDS |
| TGACAAGGTGTCAGGTGGAT+GGG | 0.531625 | 7.3:+57647088 | MS.gene38329:CDS |
| TAAACAAACATGGACTTTGG+AGG | 0.536667 | 7.3:+57646634 | None:intergenic |
| GGGGAGAAGAAAGGGAAAGG+AGG | 0.540943 | 7.3:+57647012 | MS.gene38329:CDS |
| AAAGGAGGATATTGTGGTGG+TGG | 0.543034 | 7.3:+57647027 | MS.gene38329:CDS |
| AAAGGGAAAGGAGGATATTG+TGG | 0.551862 | 7.3:+57647021 | MS.gene38329:CDS |
| TGCCTCGTTACGGTTGGCGG+CGG | 0.558232 | 7.3:-57646809 | None:intergenic |
| CGACAGTATCGGAGTGCATA+CGG | 0.565269 | 7.3:+57646880 | MS.gene38329:CDS |
| TTCAAAGGCACCAAAAGTTG+TGG | 0.566183 | 7.3:+57647173 | MS.gene38329:CDS |
| TATCGGAGTGCATACGGTGG+AGG | 0.569830 | 7.3:+57646886 | MS.gene38329:CDS |
| GTGGTTATACGGCGGTGACA+AGG | 0.572879 | 7.3:+57647073 | MS.gene38329:CDS |
| AAACAAACATGGACTTTGGA+GGG | 0.586271 | 7.3:+57646635 | None:intergenic |
| AGCAATAACGGTAACAGTAA+CGG | 0.588128 | 7.3:+57646697 | MS.gene38329:CDS |
| TACGGTGGAGGTGTGTCTCG+GGG | 0.588358 | 7.3:+57646898 | MS.gene38329:CDS |
| CGTGGCATTGATGAATGCTA+AGG | 0.590898 | 7.3:+57647116 | MS.gene38329:CDS |
| AACTTCAAACATGTGAGGTG+TGG | 0.592893 | 7.3:-57646937 | None:intergenic |
| CTCCGCCGCCAACCGTAACG+AGG | 0.600437 | 7.3:+57646807 | MS.gene38329:CDS |
| AAGGCGACGGACGACAGTAT+CGG | 0.601886 | 7.3:+57646869 | MS.gene38329:CDS |
| AGTAGTGGTAGTACTACTAC+TGG | 0.602278 | 7.3:+57646733 | MS.gene38329:CDS |
| GGCGGTGACAAGGTGTCAGG+TGG | 0.614891 | 7.3:+57647083 | MS.gene38329:CDS |
| GTACTACTACTGGTACTGCA+TGG | 0.620845 | 7.3:+57646743 | MS.gene38329:CDS |
| TAGACCTGCCTCGTTACGGT+TGG | 0.627426 | 7.3:-57646815 | None:intergenic |
| TGGTGGTGGTGGGAAGACGG+CGG | 0.632124 | 7.3:+57647041 | MS.gene38329:CDS |
| CTGCCTCAGAACGAAGGCGA+CGG | 0.639717 | 7.3:+57646856 | MS.gene38329:CDS |
| TCCCCAACTTCAAACATGTG+AGG | 0.641757 | 7.3:-57646942 | None:intergenic |
| GCTGGGGAGAAGAAAGGGAA+AGG | 0.645912 | 7.3:+57647009 | MS.gene38329:CDS |
| GGGAAAGGAGGATATTGTGG+TGG | 0.654744 | 7.3:+57647024 | MS.gene38329:CDS |
| TCAGGTGGATGGGTGTAACG+TGG | 0.655827 | 7.3:+57647098 | MS.gene38329:CDS |
| ATGTACCTGCCTCAGAACGA+AGG | 0.668073 | 7.3:+57646850 | MS.gene38329:CDS |
| CAGTATCGGAGTGCATACGG+TGG | 0.746660 | 7.3:+57646883 | MS.gene38329:CDS |
| GGTGGTGGGTGGTTATACGG+CGG | 0.751778 | 7.3:+57647065 | MS.gene38329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATACTTTTAATGTTAATG+AGG | + | chr7.3:57646771-57646790 | MS.gene38329:CDS | 20.0% |
| ! | CAAAGTAATACTAGCAATAA+CGG | + | chr7.3:57646685-57646704 | MS.gene38329:CDS | 25.0% |
| CGTTATTGCTAGTATTACTT+TGG | - | chr7.3:57646687-57646706 | None:intergenic | 30.0% | |
| AGCAATAACGGTAACAGTAA+CGG | + | chr7.3:57646697-57646716 | MS.gene38329:CDS | 35.0% | |
| GGTTTGTGAGATTCATTCAA+AGG | + | chr7.3:57647158-57647177 | MS.gene38329:CDS | 35.0% | |
| ! | GTAACAGTAACGGTTTTACT+TGG | + | chr7.3:57646707-57646726 | MS.gene38329:CDS | 35.0% |
| !! | TGAATGCTAAGGAGTATCAT+AGG | + | chr7.3:57647127-57647146 | MS.gene38329:CDS | 35.0% |
| !!! | CATTATTTTGAGGATGTGAG+TGG | + | chr7.3:57646970-57646989 | MS.gene38329:CDS | 35.0% |
| AAAGGGAAAGGAGGATATTG+TGG | + | chr7.3:57647021-57647040 | MS.gene38329:CDS | 40.0% | |
| AACTTCAAACATGTGAGGTG+TGG | - | chr7.3:57646940-57646959 | None:intergenic | 40.0% | |
| AGTAGTGGTAGTACTACTAC+TGG | + | chr7.3:57646733-57646752 | MS.gene38329:CDS | 40.0% | |
| ! | AAAAGTTGTGGTGTTGGGTT+TGG | + | chr7.3:57647185-57647204 | MS.gene38329:CDS | 40.0% |
| ! | AAACCCAACACCACAACTTT+TGG | - | chr7.3:57647186-57647205 | None:intergenic | 40.0% |
| ! | ACACCTCACATGTTTGAAGT+TGG | + | chr7.3:57646939-57646958 | MS.gene38329:CDS | 40.0% |
| ! | ACCTCACATGTTTGAAGTTG+GGG | + | chr7.3:57646941-57646960 | MS.gene38329:CDS | 40.0% |
| ! | CACCTCACATGTTTGAAGTT+GGG | + | chr7.3:57646940-57646959 | MS.gene38329:CDS | 40.0% |
| ! | GGAGTATCATAGGAGACATA+AGG | + | chr7.3:57647137-57647156 | MS.gene38329:CDS | 40.0% |
| !! | TATTTTGAGGATGTGAGTGG+TGG | + | chr7.3:57646973-57646992 | MS.gene38329:CDS | 40.0% |
| !! | TTCAAAGGCACCAAAAGTTG+TGG | + | chr7.3:57647173-57647192 | MS.gene38329:CDS | 40.0% |
| !!! | GGTTTTACTTGGTGTAGTAG+TGG | + | chr7.3:57646718-57646737 | MS.gene38329:CDS | 40.0% |
| AAACATGTGAGGTGTGGATC+AGG | - | chr7.3:57646934-57646953 | None:intergenic | 45.0% | |
| AAAGGAGGATATTGTGGTGG+TGG | + | chr7.3:57647027-57647046 | MS.gene38329:CDS | 45.0% | |
| GATTCTGTCAACAGTGTAGC+AGG | + | chr7.3:57647214-57647233 | MS.gene38329:CDS | 45.0% | |
| GCACCAAAAGTTGTGGTGTT+GGG | + | chr7.3:57647180-57647199 | MS.gene38329:CDS | 45.0% | |
| GTACTACTACTGGTACTGCA+TGG | + | chr7.3:57646743-57646762 | MS.gene38329:CDS | 45.0% | |
| TCCCCAACTTCAAACATGTG+AGG | - | chr7.3:57646945-57646964 | None:intergenic | 45.0% | |
| ! | CATGTTTGAAGTTGGGGAAG+AGG | + | chr7.3:57646947-57646966 | MS.gene38329:CDS | 45.0% |
| !! | CGTGGCATTGATGAATGCTA+AGG | + | chr7.3:57647116-57647135 | MS.gene38329:CDS | 45.0% |
| !!! | GGGGAAGAGGCATTATTTTG+AGG | + | chr7.3:57646960-57646979 | MS.gene38329:CDS | 45.0% |
| ATGTACCTGCCTCAGAACGA+AGG | + | chr7.3:57646850-57646869 | MS.gene38329:CDS | 50.0% | |
| GGCACCAAAAGTTGTGGTGT+TGG | + | chr7.3:57647179-57647198 | MS.gene38329:CDS | 50.0% | |
| GGGAAAGGAGGATATTGTGG+TGG | + | chr7.3:57647024-57647043 | MS.gene38329:CDS | 50.0% | |
| TAGCTAGACCTGCCTCGTTA+CGG | - | chr7.3:57646822-57646841 | None:intergenic | 50.0% | |
| TTTGAGGATGTGAGTGGTGG+TGG | + | chr7.3:57646976-57646995 | MS.gene38329:CDS | 50.0% | |
| ! | CGACAGTATCGGAGTGCATA+CGG | + | chr7.3:57646880-57646899 | MS.gene38329:CDS | 50.0% |
| ! | TGACAAGGTGTCAGGTGGAT+GGG | + | chr7.3:57647088-57647107 | MS.gene38329:CDS | 50.0% |
| !! | GAGGATATTGTGGTGGTGGT+GGG | + | chr7.3:57647031-57647050 | MS.gene38329:CDS | 50.0% |
| AAGGCGACGGACGACAGTAT+CGG | + | chr7.3:57646869-57646888 | MS.gene38329:CDS | 55.0% | |
| GCTGGGGAGAAGAAAGGGAA+AGG | + | chr7.3:57647009-57647028 | MS.gene38329:CDS | 55.0% | |
| GGGGAGAAGAAAGGGAAAGG+AGG | + | chr7.3:57647012-57647031 | MS.gene38329:CDS | 55.0% | |
| GTGGTTATACGGCGGTGACA+AGG | + | chr7.3:57647073-57647092 | MS.gene38329:CDS | 55.0% | |
| TAGACCTGCCTCGTTACGGT+TGG | - | chr7.3:57646818-57646837 | None:intergenic | 55.0% | |
| TATCGGAGTGCATACGGTGG+AGG | + | chr7.3:57646886-57646905 | MS.gene38329:CDS | 55.0% | |
| TCAGGTGGATGGGTGTAACG+TGG | + | chr7.3:57647098-57647117 | MS.gene38329:CDS | 55.0% | |
| ! | ATACGGTGGAGGTGTGTCTC+GGG | + | chr7.3:57646897-57646916 | MS.gene38329:CDS | 55.0% |
| ! | CAGTATCGGAGTGCATACGG+TGG | + | chr7.3:57646883-57646902 | MS.gene38329:CDS | 55.0% |
| ! | CATACGGTGGAGGTGTGTCT+CGG | + | chr7.3:57646896-57646915 | MS.gene38329:CDS | 55.0% |
| ! | GTGACAAGGTGTCAGGTGGA+TGG | + | chr7.3:57647087-57647106 | MS.gene38329:CDS | 55.0% |
| !! | AGGATGTGAGTGGTGGTGGT+GGG | + | chr7.3:57646980-57646999 | MS.gene38329:CDS | 55.0% |
| !! | GGAGGATATTGTGGTGGTGG+TGG | + | chr7.3:57647030-57647049 | MS.gene38329:CDS | 55.0% |
| !! | TTGTGGTGGTGGTGGGAAGA+CGG | + | chr7.3:57647038-57647057 | MS.gene38329:CDS | 55.0% |
| ACCTGCCTCGTTACGGTTGG+CGG | - | chr7.3:57646815-57646834 | None:intergenic | 60.0% | |
| CTGCCTCAGAACGAAGGCGA+CGG | + | chr7.3:57646856-57646875 | MS.gene38329:CDS | 60.0% | |
| ! | GGCTGGCTGGGGAGAAGAAA+GGG | + | chr7.3:57647004-57647023 | MS.gene38329:CDS | 60.0% |
| ! | TACGGCGGTGACAAGGTGTC+AGG | + | chr7.3:57647080-57647099 | MS.gene38329:CDS | 60.0% |
| ! | TACGGTGGAGGTGTGTCTCG+GGG | + | chr7.3:57646898-57646917 | MS.gene38329:CDS | 60.0% |
| !! | ATGTGAGTGGTGGTGGTGGG+GGG | + | chr7.3:57646983-57647002 | MS.gene38329:CDS | 60.0% |
| !! | GAGGATGTGAGTGGTGGTGG+TGG | + | chr7.3:57646979-57646998 | MS.gene38329:CDS | 60.0% |
| !! | GATGTGAGTGGTGGTGGTGG+GGG | + | chr7.3:57646982-57647001 | MS.gene38329:CDS | 60.0% |
| !! | GGATGTGAGTGGTGGTGGTG+GGG | + | chr7.3:57646981-57647000 | MS.gene38329:CDS | 60.0% |
| !! | GGCGGTGGTGGGTGGTTATA+CGG | + | chr7.3:57647062-57647081 | MS.gene38329:CDS | 60.0% |
| !! | GGTGGTGGGTGGTTATACGG+CGG | + | chr7.3:57647065-57647084 | MS.gene38329:CDS | 60.0% |
| CGTCCGTCGCCTTCGTTCTG+AGG | - | chr7.3:57646862-57646881 | None:intergenic | 65.0% | |
| TGCCTCGTTACGGTTGGCGG+CGG | - | chr7.3:57646812-57646831 | None:intergenic | 65.0% | |
| ! | GGCGGTGACAAGGTGTCAGG+TGG | + | chr7.3:57647083-57647102 | MS.gene38329:CDS | 65.0% |
| !! | CGTCGCCTTCGTTCTGAGGC+AGG | - | chr7.3:57646858-57646877 | None:intergenic | 65.0% |
| !! | GGGCTGGCTGGGGAGAAGAA+AGG | + | chr7.3:57647003-57647022 | MS.gene38329:CDS | 65.0% |
| !! | TGGTGGTGGTGGGAAGACGG+CGG | + | chr7.3:57647041-57647060 | MS.gene38329:CDS | 65.0% |
| CTCCGCCGCCAACCGTAACG+AGG | + | chr7.3:57646807-57646826 | MS.gene38329:CDS | 70.0% | |
| GCCGCCAACCGTAACGAGGC+AGG | + | chr7.3:57646811-57646830 | MS.gene38329:CDS | 70.0% | |
| !! | TGGTGGTGGGAAGACGGCGG+CGG | + | chr7.3:57647044-57647063 | MS.gene38329:CDS | 70.0% |
| GGGAAGACGGCGGCGGTGGT+GGG | + | chr7.3:57647051-57647070 | MS.gene38329:CDS | 75.0% | |
| TGGGAAGACGGCGGCGGTGG+TGG | + | chr7.3:57647050-57647069 | MS.gene38329:CDS | 75.0% | |
| TGGTGGGAAGACGGCGGCGG+TGG | + | chr7.3:57647047-57647066 | MS.gene38329:CDS | 75.0% | |
| !! | AAGACGGCGGCGGTGGTGGG+TGG | + | chr7.3:57647054-57647073 | MS.gene38329:CDS | 75.0% |
| !! | GAGTGGTGGTGGTGGGGGGC+TGG | + | chr7.3:57646987-57647006 | MS.gene38329:CDS | 75.0% |
| !! | GTGGTGGTGGGGGGCTGGCT+GGG | + | chr7.3:57646992-57647011 | MS.gene38329:CDS | 75.0% |
| !! | TGGTGGTGGGGGGCTGGCTG+GGG | + | chr7.3:57646993-57647012 | MS.gene38329:CDS | 75.0% |
| !!! | GGTGGTGGTGGGGGGCTGGC+TGG | + | chr7.3:57646991-57647010 | MS.gene38329:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 57646643 | 57647266 | 57646643 | ID=MS.gene38329 |
| chr7.3 | mRNA | 57646643 | 57647266 | 57646643 | ID=MS.gene38329.t1;Parent=MS.gene38329 |
| chr7.3 | exon | 57646643 | 57647266 | 57646643 | ID=MS.gene38329.t1.exon1;Parent=MS.gene38329.t1 |
| chr7.3 | CDS | 57646643 | 57647266 | 57646643 | ID=cds.MS.gene38329.t1;Parent=MS.gene38329.t1 |
| Gene Sequence |
| Protein sequence |
