Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053383.t1 | XP_013467094.1 | 92.6 | 189 | 14 | 0 | 1 | 189 | 1 | 189 | 1.90E-69 | 272.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053383.t1 | Q9LW68 | 89.5 | 124 | 13 | 0 | 66 | 189 | 49 | 172 | 1.2e-61 | 237.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053383.t1 | A0A072VGF5 | 92.6 | 189 | 14 | 0 | 1 | 189 | 1 | 189 | 1.4e-69 | 272.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene053383 | 0.834839 | 2.38E-56 | -1.69E-46 |
| MS.gene050100 | MS.gene053383 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene050298 | MS.gene053383 | 0.838138 | 3.44E-57 | -1.69E-46 |
| MS.gene050563 | MS.gene053383 | 0.898841 | 3.57E-77 | -1.69E-46 |
| MS.gene050584 | MS.gene053383 | 0.841391 | 4.89E-58 | -1.69E-46 |
| MS.gene050585 | MS.gene053383 | 0.843996 | 9.94E-59 | -1.69E-46 |
| MS.gene050587 | MS.gene053383 | 0.835504 | 1.62E-56 | -1.69E-46 |
| MS.gene05143 | MS.gene053383 | 0.832826 | 7.58E-56 | -1.69E-46 |
| MS.gene051789 | MS.gene053383 | 0.828052 | 1.11E-54 | -1.69E-46 |
| MS.gene052142 | MS.gene053383 | 0.874771 | 5.20E-68 | -1.69E-46 |
| MS.gene052187 | MS.gene053383 | 0.804492 | 2.10E-49 | -1.69E-46 |
| MS.gene052456 | MS.gene053383 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene052698 | MS.gene053383 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene053074 | MS.gene053383 | 0.813743 | 2.19E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene05456 | 0.86055 | 1.91E-63 | -1.69E-46 |
| MS.gene053383 | MS.gene054791 | 0.805634 | 1.21E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene055359 | 0.904639 | 9.94E-80 | -1.69E-46 |
| MS.gene053383 | MS.gene057022 | 0.812228 | 4.71E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene058918 | 0.842028 | 3.32E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene059006 | 0.849613 | 2.89E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene059632 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene059768 | 0.86682 | 2.16E-65 | -1.69E-46 |
| MS.gene053383 | MS.gene060513 | 0.821069 | 4.91E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene060691 | 0.864062 | 1.59E-64 | -1.69E-46 |
| MS.gene053383 | MS.gene061336 | 0.882677 | 8.53E-71 | -1.69E-46 |
| MS.gene053383 | MS.gene061337 | 0.876894 | 9.71E-69 | -1.69E-46 |
| MS.gene053383 | MS.gene061879 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene061880 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene061947 | 0.841429 | 4.78E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene063207 | 0.871929 | 4.70E-67 | -1.69E-46 |
| MS.gene053383 | MS.gene063566 | 0.917566 | 4.54E-86 | -1.69E-46 |
| MS.gene053383 | MS.gene064719 | 0.810997 | 8.72E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene064944 | 0.810727 | 9.98E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene065358 | 0.840468 | 8.54E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene065369 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene053383 | MS.gene066296 | 0.804008 | 2.65E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene067101 | 0.824583 | 7.46E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene067103 | 0.807734 | 4.37E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene067305 | 0.870017 | 2.00E-66 | -1.69E-46 |
| MS.gene053383 | MS.gene067409 | 0.820666 | 6.08E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene068818 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene069330 | 0.917614 | 4.28E-86 | -1.69E-46 |
| MS.gene053383 | MS.gene070489 | 0.899129 | 2.69E-77 | -1.69E-46 |
| MS.gene053383 | MS.gene070499 | 0.845459 | 4.01E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene072320 | 0.81546 | 9.14E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene073225 | 0.817946 | 2.53E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene074125 | 0.82855 | 8.45E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene074520 | 0.829203 | 5.87E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene07830 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene08896 | 0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene09437 | 0.851047 | 1.14E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene09868 | 0.843257 | 1.57E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene20964 | 0.869491 | 2.98E-66 | -1.69E-46 |
| MS.gene053383 | MS.gene21082 | 0.83759 | 4.75E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene22109 | 0.914997 | 9.93E-85 | -1.69E-46 |
| MS.gene053383 | MS.gene22410 | 0.885845 | 5.72E-72 | -1.69E-46 |
| MS.gene053383 | MS.gene22855 | 0.836742 | 7.83E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene22856 | 0.83374 | 4.48E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene22900 | 0.920694 | 9.25E-88 | -1.69E-46 |
| MS.gene053383 | MS.gene22934 | 0.837739 | 4.35E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene23012 | 0.825656 | 4.16E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene23849 | 0.811711 | 6.11E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene24114 | 0.809953 | 1.47E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene24698 | 0.840121 | 1.05E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene26076 | 0.801844 | 7.43E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene27096 | 0.81879 | 1.63E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene28281 | 0.848524 | 5.80E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene29449 | 0.817748 | 2.81E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene29954 | 0.830813 | 2.38E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene31254 | 0.828281 | 9.81E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene31359 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene31360 | 0.822809 | 1.94E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene33324 | 0.833075 | 6.57E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene33515 | 0.846413 | 2.21E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene33516 | 0.846921 | 1.60E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene33517 | 0.849666 | 2.79E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene33518 | 0.844491 | 7.32E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene35373 | 0.802186 | 6.32E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene35428 | 0.809122 | 2.21E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene35695 | 0.826561 | 2.54E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene36181 | 0.83254 | 8.92E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene37909 | 0.904958 | 7.12E-80 | -1.69E-46 |
| MS.gene053383 | MS.gene38329 | 0.807294 | 5.42E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene38771 | 0.816321 | 5.87E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene40346 | 0.808757 | 2.65E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene40442 | 0.823582 | 1.28E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene41357 | 0.829796 | 4.21E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene42294 | 0.828912 | 6.90E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene43114 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene47108 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene48835 | 0.825233 | 5.24E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene49634 | 0.817849 | 2.66E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene51424 | 0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene51580 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene53244 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene53275 | 0.851341 | 9.45E-61 | -1.69E-46 |
| MS.gene053383 | MS.gene53287 | 0.816515 | 5.32E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene53305 | 0.820085 | 8.27E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene53586 | 0.806416 | 8.32E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene53694 | 0.818525 | 1.87E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene54033 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene54133 | 0.868225 | 7.65E-66 | -1.69E-46 |
| MS.gene053383 | MS.gene54531 | 0.823073 | 1.69E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene55468 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene56128 | 0.815479 | 9.05E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene56232 | 0.8311 | 2.02E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene58364 | 0.823776 | 1.15E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene59848 | 0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene60080 | 0.837751 | 4.32E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene60245 | 0.890938 | 6.26E-74 | -1.69E-46 |
| MS.gene053383 | MS.gene60986 | 0.806494 | 8.01E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene61338 | 0.801101 | 1.06E-48 | -1.69E-46 |
| MS.gene053383 | MS.gene61665 | 0.895478 | 9.23E-76 | -1.69E-46 |
| MS.gene053383 | MS.gene62049 | 0.885048 | 1.14E-71 | -1.69E-46 |
| MS.gene053383 | MS.gene64052 | 0.831424 | 1.68E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene64101 | 0.849159 | 3.87E-60 | -1.69E-46 |
| MS.gene053383 | MS.gene64425 | 0.804129 | 2.51E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene64427 | 0.821652 | 3.60E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene65481 | 0.919991 | 2.25E-87 | -1.69E-46 |
| MS.gene053383 | MS.gene65661 | 0.842448 | 2.57E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene66966 | 0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene68922 | 0.867303 | 1.51E-65 | -1.69E-46 |
| MS.gene053383 | MS.gene69587 | 0.917937 | 2.88E-86 | -1.69E-46 |
| MS.gene053383 | MS.gene71875 | 0.805071 | 1.59E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene72869 | 0.826547 | 2.56E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene73229 | 0.883435 | 4.50E-71 | -1.69E-46 |
| MS.gene053383 | MS.gene74448 | 0.816976 | 4.19E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene75494 | 0.825876 | 3.69E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene76613 | 0.812955 | 3.27E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene76705 | 0.872677 | 2.65E-67 | -1.69E-46 |
| MS.gene053383 | MS.gene79672 | 0.826507 | 2.61E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene80411 | 0.805301 | 1.43E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene80724 | 0.80346 | 3.45E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene80842 | 0.875355 | 3.29E-68 | -1.69E-46 |
| MS.gene053383 | MS.gene81601 | 0.898953 | 3.20E-77 | -1.69E-46 |
| MS.gene053383 | MS.gene81612 | 0.837104 | 6.33E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene81695 | 0.817728 | 2.84E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene81735 | 0.813408 | 2.60E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene81958 | 0.843144 | 1.68E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene81959 | 0.83857 | 2.66E-57 | -1.69E-46 |
| MS.gene053383 | MS.gene82214 | 0.8405 | 8.38E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene82571 | 0.870362 | 1.55E-66 | -1.69E-46 |
| MS.gene053383 | MS.gene82810 | 0.813628 | 2.32E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene83221 | 0.871454 | 6.75E-67 | -1.69E-46 |
| MS.gene053383 | MS.gene83537 | 0.830304 | 3.17E-55 | -1.69E-46 |
| MS.gene053383 | MS.gene84142 | 0.812436 | 4.24E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene84726 | 0.845877 | 3.09E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene84833 | 0.868593 | 5.82E-66 | -1.69E-46 |
| MS.gene053383 | MS.gene86406 | 0.811935 | 5.46E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene87985 | 0.83262 | 8.52E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene88180 | 0.824348 | 8.47E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene88188 | 0.813984 | 1.94E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene89011 | 0.808292 | 3.33E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene90152 | 0.865464 | 5.80E-65 | -1.69E-46 |
| MS.gene053383 | MS.gene90334 | 0.841336 | 5.05E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene90649 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene91762 | 0.823461 | 1.37E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene91764 | 0.8067 | 7.24E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene91805 | 0.893853 | 4.27E-75 | -1.69E-46 |
| MS.gene053383 | MS.gene92329 | 0.823424 | 1.40E-53 | -1.69E-46 |
| MS.gene053383 | MS.gene92495 | 0.816365 | 5.74E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene92551 | 0.853864 | 1.80E-61 | -1.69E-46 |
| MS.gene053383 | MS.gene93760 | 0.847441 | 1.15E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene94555 | 0.847527 | 1.09E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene95738 | 0.808935 | 2.43E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene95739 | 0.834792 | 2.44E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene96021 | 0.808382 | 3.18E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene98787 | 0.828062 | 1.11E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene98837 | 0.8837 | 3.59E-71 | -1.69E-46 |
| MS.gene053383 | MS.gene99922 | 0.815592 | 8.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053383.t1 | MTR_1g442860 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 2.46e-155 | 429 |
| MS.gene053383.t1 | MTR_1g075990 | 79.474 | 190 | 33 | 2 | 19 | 208 | 13 | 196 | 1.73e-91 | 266 |
| MS.gene053383.t1 | MTR_5g072510 | 80.282 | 142 | 28 | 0 | 55 | 196 | 27 | 168 | 7.40e-88 | 258 |
| MS.gene053383.t1 | MTR_4g094428 | 83.704 | 135 | 22 | 0 | 64 | 198 | 45 | 179 | 7.47e-87 | 256 |
| MS.gene053383.t1 | MTR_7g097030 | 75.385 | 195 | 47 | 1 | 1 | 195 | 1 | 194 | 1.14e-86 | 255 |
| MS.gene053383.t1 | MTR_1g069825 | 72.308 | 195 | 41 | 1 | 1 | 195 | 1 | 182 | 1.59e-84 | 250 |
| MS.gene053383.t1 | MTR_3g031830 | 70.760 | 171 | 39 | 2 | 37 | 196 | 3 | 173 | 2.96e-76 | 229 |
| MS.gene053383.t1 | MTR_2g092950 | 71.724 | 145 | 41 | 0 | 44 | 188 | 2 | 146 | 4.05e-75 | 224 |
| MS.gene053383.t1 | MTR_4g079930 | 74.436 | 133 | 34 | 0 | 56 | 188 | 20 | 152 | 1.21e-74 | 223 |
| MS.gene053383.t1 | MTR_2g076400 | 65.644 | 163 | 55 | 1 | 34 | 195 | 1 | 163 | 1.27e-73 | 221 |
| MS.gene053383.t1 | MTR_2g016110 | 72.662 | 139 | 38 | 0 | 57 | 195 | 27 | 165 | 7.42e-72 | 216 |
| MS.gene053383.t1 | MTR_7g115700 | 63.924 | 158 | 55 | 2 | 40 | 196 | 2 | 158 | 4.31e-71 | 214 |
| MS.gene053383.t1 | MTR_1g080210 | 78.378 | 148 | 32 | 0 | 42 | 189 | 17 | 164 | 5.85e-71 | 214 |
| MS.gene053383.t1 | MTR_8g086350 | 72.800 | 125 | 34 | 0 | 64 | 188 | 30 | 154 | 7.47e-58 | 181 |
| MS.gene053383.t1 | MTR_1g114020 | 78.431 | 51 | 11 | 0 | 58 | 108 | 64 | 114 | 8.06e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053383.t1 | AT2G31160 | 84.277 | 159 | 25 | 0 | 38 | 196 | 27 | 185 | 6.70e-88 | 258 |
| MS.gene053383.t1 | AT1G07090 | 77.551 | 147 | 28 | 1 | 51 | 197 | 22 | 163 | 9.40e-87 | 254 |
| MS.gene053383.t1 | AT3G23290 | 95.238 | 126 | 6 | 0 | 64 | 189 | 47 | 172 | 5.41e-82 | 243 |
| MS.gene053383.t1 | AT5G58500 | 80.741 | 135 | 25 | 1 | 63 | 196 | 17 | 151 | 9.47e-82 | 241 |
| MS.gene053383.t1 | AT5G28490 | 80.405 | 148 | 23 | 1 | 47 | 194 | 13 | 154 | 1.99e-75 | 226 |
| MS.gene053383.t1 | AT2G42610 | 77.344 | 128 | 29 | 0 | 61 | 188 | 21 | 148 | 7.17e-73 | 219 |
| MS.gene053383.t1 | AT2G42610 | 77.344 | 128 | 29 | 0 | 61 | 188 | 21 | 148 | 7.17e-73 | 219 |
| MS.gene053383.t1 | AT3G04510 | 75.168 | 149 | 37 | 0 | 46 | 194 | 14 | 162 | 6.17e-72 | 217 |
| MS.gene053383.t1 | AT1G78815 | 62.585 | 147 | 55 | 0 | 64 | 210 | 39 | 185 | 1.69e-66 | 203 |
| MS.gene053383.t1 | AT4G18610 | 64.138 | 145 | 51 | 1 | 45 | 188 | 17 | 161 | 5.39e-64 | 197 |
| MS.gene053383.t1 | AT1G16910 | 57.419 | 155 | 61 | 1 | 39 | 193 | 2 | 151 | 6.24e-62 | 191 |
Find 48 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCGTTACCTCGACCAATT+TGG | 0.269006 | 1.4:+27086408 | MS.gene053383:CDS |
| TGGATTTGGATGTCCATAAA+AGG | 0.277270 | 1.4:-27086460 | None:intergenic |
| GGACATGGTGCAGGTGGATT+TGG | 0.320133 | 1.4:-27086474 | None:intergenic |
| GACTTTACCTTCGCGAAGTT+AGG | 0.323181 | 1.4:+27086613 | MS.gene053383:CDS |
| GTTGTTGTTGATGTTGTTGA+TGG | 0.340470 | 1.4:-27086267 | None:intergenic |
| GGGTTTGTTATGTTGATCAT+AGG | 0.347871 | 1.4:-27086165 | None:intergenic |
| AAGCCAGAAGCTAATCCTTT+TGG | 0.361490 | 1.4:+27086576 | MS.gene053383:CDS |
| AGAAGAGATTGGAACACATT+TGG | 0.367128 | 1.4:+27086315 | MS.gene053383:CDS |
| GTGGTGGTCTATGGTTTCTT+AGG | 0.368488 | 1.4:-27086344 | None:intergenic |
| GGTGGTGGTGGTGGCGGCTG+AGG | 0.370057 | 1.4:-27086693 | None:intergenic |
| AAATTCTTGAAGAGAATTCA+TGG | 0.377394 | 1.4:-27086103 | None:intergenic |
| ACTTTACCTTCGCGAAGTTA+GGG | 0.398859 | 1.4:+27086614 | MS.gene053383:CDS |
| GTTGTAGTTGTATTATTTGA+TGG | 0.403549 | 1.4:-27086714 | None:intergenic |
| GCACCAAAAGGATTAGCTTC+TGG | 0.418214 | 1.4:-27086579 | None:intergenic |
| GGTTTGTTATGTTGATCATA+GGG | 0.430093 | 1.4:-27086164 | None:intergenic |
| GGTAGTCTTGATGCACTCAT+TGG | 0.434097 | 1.4:+27086519 | MS.gene053383:CDS |
| GTTGTATTATTTGATGGTGG+TGG | 0.443442 | 1.4:-27086708 | None:intergenic |
| TTATTTGATGGTGGTGGTGG+TGG | 0.448714 | 1.4:-27086702 | None:intergenic |
| AGAATCAAAAGAGAAGAGAT+TGG | 0.459394 | 1.4:+27086304 | MS.gene053383:CDS |
| CTTGTCCTCTTCGCCAAGCG+TGG | 0.459831 | 1.4:+27086496 | MS.gene053383:CDS |
| GGTGGTGGTGGCGGCTGAGG+CGG | 0.465046 | 1.4:-27086690 | None:intergenic |
| GTATTATTTGATGGTGGTGG+TGG | 0.481872 | 1.4:-27086705 | None:intergenic |
| TTGTCCTCTTCGCCAAGCGT+GGG | 0.488923 | 1.4:+27086497 | MS.gene053383:CDS |
| CGAGGTAACGCAAGAATTCA+AGG | 0.492274 | 1.4:-27086398 | None:intergenic |
| AGAGTGAAAGTGGTGGTCTA+TGG | 0.493036 | 1.4:-27086353 | None:intergenic |
| GTCATCGTCATCGATGATGA+TGG | 0.500415 | 1.4:-27086186 | None:intergenic |
| GTAGTCTTGATGCACTCATT+GGG | 0.507513 | 1.4:+27086520 | MS.gene053383:CDS |
| TGATGTTGTTGTTGTGGACG+AGG | 0.512727 | 1.4:-27086241 | None:intergenic |
| CGAACAGCACGAGCACCAAA+AGG | 0.514487 | 1.4:-27086591 | None:intergenic |
| GTTGTTGATGTTGTTGATGG+TGG | 0.518465 | 1.4:-27086264 | None:intergenic |
| TGGTGGTGATGTTGTTGTTG+TGG | 0.519070 | 1.4:-27086247 | None:intergenic |
| CACGCTTGGCGAAGAGGACA+AGG | 0.527749 | 1.4:-27086495 | None:intergenic |
| CTTTCACTCTCACGTTGTAG+TGG | 0.531680 | 1.4:+27086366 | MS.gene053383:CDS |
| GGATTTGGATGTCCATAAAA+GGG | 0.532805 | 1.4:-27086459 | None:intergenic |
| CATCAAGACTACCCCACGCT+TGG | 0.543485 | 1.4:-27086509 | None:intergenic |
| GTAGTTGTATTATTTGATGG+TGG | 0.549591 | 1.4:-27086711 | None:intergenic |
| AGAGGACAAGGACATGGTGC+AGG | 0.565916 | 1.4:-27086483 | None:intergenic |
| CTACCCCACGCTTGGCGAAG+AGG | 0.567363 | 1.4:-27086501 | None:intergenic |
| CTACAACGTGAGAGTGAAAG+TGG | 0.580478 | 1.4:-27086363 | None:intergenic |
| GGACAAGGACATGGTGCAGG+TGG | 0.588264 | 1.4:-27086480 | None:intergenic |
| TCATCGTCATCGATGATGAT+GGG | 0.604263 | 1.4:-27086185 | None:intergenic |
| TGTCCTCTTCGCCAAGCGTG+GGG | 0.612011 | 1.4:+27086498 | MS.gene053383:CDS |
| TGTTGTAGATGACGATGGTA+TGG | 0.613461 | 1.4:-27086208 | None:intergenic |
| GATTCTCAAGCTAAAGCTAG+AGG | 0.620882 | 1.4:+27086636 | MS.gene053383:CDS |
| TGGCGAAGAGGACAAGGACA+TGG | 0.629659 | 1.4:-27086489 | None:intergenic |
| GAGAATCCCTAACTTCGCGA+AGG | 0.649287 | 1.4:-27086620 | None:intergenic |
| GCTGATGTTGTAGATGACGA+TGG | 0.727039 | 1.4:-27086213 | None:intergenic |
| CAACGTGAGAGTGAAAGTGG+TGG | 0.746060 | 1.4:-27086360 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTGTAGTTGTATTATTTGA+TGG | - | chr1.4:27086717-27086736 | None:intergenic | 25.0% |
| AGAATCAAAAGAGAAGAGAT+TGG | + | chr1.4:27086304-27086323 | MS.gene053383:CDS | 30.0% | |
| GTAGTTGTATTATTTGATGG+TGG | - | chr1.4:27086714-27086733 | None:intergenic | 30.0% | |
| !! | GGTTTGTTATGTTGATCATA+GGG | - | chr1.4:27086167-27086186 | None:intergenic | 30.0% |
| !! | TTTTGATTCTCGTATCTACT+TGG | - | chr1.4:27086294-27086313 | None:intergenic | 30.0% |
| !!! | GAACCTTTGTTTTTCCAAAT+TGG | - | chr1.4:27086425-27086444 | None:intergenic | 30.0% |
| !!! | GTTCATCATGTCTTTGTTTT+TGG | - | chr1.4:27086139-27086158 | None:intergenic | 30.0% |
| AGAAGAGATTGGAACACATT+TGG | + | chr1.4:27086315-27086334 | MS.gene053383:CDS | 35.0% | |
| CGACCAATTTGGAAAAACAA+AGG | + | chr1.4:27086419-27086438 | MS.gene053383:CDS | 35.0% | |
| GGATTTGGATGTCCATAAAA+GGG | - | chr1.4:27086462-27086481 | None:intergenic | 35.0% | |
| TGGATTTGGATGTCCATAAA+AGG | - | chr1.4:27086463-27086482 | None:intergenic | 35.0% | |
| ! | ACTCAGATTTGTCCCTTTTA+TGG | + | chr1.4:27086447-27086466 | MS.gene053383:CDS | 35.0% |
| ! | GTTGTTGTTGATGTTGTTGA+TGG | - | chr1.4:27086270-27086289 | None:intergenic | 35.0% |
| !! | CTGCTTTTGAAGAAAATGGT+GGG | + | chr1.4:27086553-27086572 | MS.gene053383:CDS | 35.0% |
| !! | GGGTTTGTTATGTTGATCAT+AGG | - | chr1.4:27086168-27086187 | None:intergenic | 35.0% |
| !! | GTTGTATTATTTGATGGTGG+TGG | - | chr1.4:27086711-27086730 | None:intergenic | 35.0% |
| !! | TTGTTTTTCCAAATTGGTCG+AGG | - | chr1.4:27086419-27086438 | None:intergenic | 35.0% |
| !!! | AGAGCTGCTTTTGAAGAAAA+TGG | + | chr1.4:27086549-27086568 | MS.gene053383:CDS | 35.0% |
| ACTTTACCTTCGCGAAGTTA+GGG | + | chr1.4:27086614-27086633 | MS.gene053383:CDS | 40.0% | |
| GATTCTCAAGCTAAAGCTAG+AGG | + | chr1.4:27086636-27086655 | MS.gene053383:CDS | 40.0% | |
| TCATCGTCATCGATGATGAT+GGG | - | chr1.4:27086188-27086207 | None:intergenic | 40.0% | |
| TGTTGTAGATGACGATGGTA+TGG | - | chr1.4:27086211-27086230 | None:intergenic | 40.0% | |
| ! | AAGCCAGAAGCTAATCCTTT+TGG | + | chr1.4:27086576-27086595 | MS.gene053383:CDS | 40.0% |
| ! | GTAGTCTTGATGCACTCATT+GGG | + | chr1.4:27086520-27086539 | MS.gene053383:CDS | 40.0% |
| ! | GTTGTTGATGTTGTTGATGG+TGG | - | chr1.4:27086267-27086286 | None:intergenic | 40.0% |
| !! | GTATTATTTGATGGTGGTGG+TGG | - | chr1.4:27086708-27086727 | None:intergenic | 40.0% |
| !!! | GCTGCTTTTGAAGAAAATGG+TGG | + | chr1.4:27086552-27086571 | MS.gene053383:CDS | 40.0% |
| AGAGTGAAAGTGGTGGTCTA+TGG | - | chr1.4:27086356-27086375 | None:intergenic | 45.0% | |
| CGAGGTAACGCAAGAATTCA+AGG | - | chr1.4:27086401-27086420 | None:intergenic | 45.0% | |
| CTACAACGTGAGAGTGAAAG+TGG | - | chr1.4:27086366-27086385 | None:intergenic | 45.0% | |
| CTTTCACTCTCACGTTGTAG+TGG | + | chr1.4:27086366-27086385 | MS.gene053383:CDS | 45.0% | |
| GACTTTACCTTCGCGAAGTT+AGG | + | chr1.4:27086613-27086632 | MS.gene053383:CDS | 45.0% | |
| GCTGATGTTGTAGATGACGA+TGG | - | chr1.4:27086216-27086235 | None:intergenic | 45.0% | |
| GTCATCGTCATCGATGATGA+TGG | - | chr1.4:27086189-27086208 | None:intergenic | 45.0% | |
| GTGGTGGTCTATGGTTTCTT+AGG | - | chr1.4:27086347-27086366 | None:intergenic | 45.0% | |
| TTGCGTTACCTCGACCAATT+TGG | + | chr1.4:27086408-27086427 | MS.gene053383:CDS | 45.0% | |
| ! | GGTAGTCTTGATGCACTCAT+TGG | + | chr1.4:27086519-27086538 | MS.gene053383:CDS | 45.0% |
| ! | TGATGTTGTTGTTGTGGACG+AGG | - | chr1.4:27086244-27086263 | None:intergenic | 45.0% |
| ! | TGGTGGTGATGTTGTTGTTG+TGG | - | chr1.4:27086250-27086269 | None:intergenic | 45.0% |
| !! | GCACCAAAAGGATTAGCTTC+TGG | - | chr1.4:27086582-27086601 | None:intergenic | 45.0% |
| !! | TTATTTGATGGTGGTGGTGG+TGG | - | chr1.4:27086705-27086724 | None:intergenic | 45.0% |
| CAACGTGAGAGTGAAAGTGG+TGG | - | chr1.4:27086363-27086382 | None:intergenic | 50.0% | |
| GAGAATCCCTAACTTCGCGA+AGG | - | chr1.4:27086623-27086642 | None:intergenic | 50.0% | |
| AGAGGACAAGGACATGGTGC+AGG | - | chr1.4:27086486-27086505 | None:intergenic | 55.0% | |
| CATCAAGACTACCCCACGCT+TGG | - | chr1.4:27086512-27086531 | None:intergenic | 55.0% | |
| CGAACAGCACGAGCACCAAA+AGG | - | chr1.4:27086594-27086613 | None:intergenic | 55.0% | |
| TGGCGAAGAGGACAAGGACA+TGG | - | chr1.4:27086492-27086511 | None:intergenic | 55.0% | |
| TTGTCCTCTTCGCCAAGCGT+GGG | + | chr1.4:27086497-27086516 | MS.gene053383:CDS | 55.0% | |
| ! | GGACATGGTGCAGGTGGATT+TGG | - | chr1.4:27086477-27086496 | None:intergenic | 55.0% |
| !! | TTTGATGGTGGTGGTGGTGG+CGG | - | chr1.4:27086702-27086721 | None:intergenic | 55.0% |
| CACGCTTGGCGAAGAGGACA+AGG | - | chr1.4:27086498-27086517 | None:intergenic | 60.0% | |
| CTTGTCCTCTTCGCCAAGCG+TGG | + | chr1.4:27086496-27086515 | MS.gene053383:CDS | 60.0% | |
| GGACAAGGACATGGTGCAGG+TGG | - | chr1.4:27086483-27086502 | None:intergenic | 60.0% | |
| TGTCCTCTTCGCCAAGCGTG+GGG | + | chr1.4:27086498-27086517 | MS.gene053383:CDS | 60.0% | |
| CTACCCCACGCTTGGCGAAG+AGG | - | chr1.4:27086504-27086523 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGGCGGCTGAGG+CGG | - | chr1.4:27086693-27086712 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGTGGCGGCTG+AGG | - | chr1.4:27086696-27086715 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 27086105 | 27086749 | 27086105 | ID=MS.gene053383 |
| chr1.4 | mRNA | 27086105 | 27086749 | 27086105 | ID=MS.gene053383.t1;Parent=MS.gene053383 |
| chr1.4 | exon | 27086105 | 27086749 | 27086105 | ID=MS.gene053383.t1.exon1;Parent=MS.gene053383.t1 |
| chr1.4 | CDS | 27086105 | 27086749 | 27086105 | ID=cds.MS.gene053383.t1;Parent=MS.gene053383.t1 |
| Gene Sequence |
| Protein sequence |
