AlfalfaGEDB | MS.gene053383

M. sativa cultivar XinJiangDaYe / MS.gene053383

KEGG: -
GO: -
PFAM: PF04852.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053383.t1	XP_013467094.1	92.6	189	14	0	1	189	1	189	1.90E-69	272.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053383.t1	Q9LW68	89.5	124	13	0	66	189	49	172	1.2e-61	237.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053383.t1	A0A072VGF5	92.6	189	14	0	1	189	1	189	1.4e-69	272.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene053383	0.834839	2.38E-56	-1.69E-46
MS.gene050100	MS.gene053383	0.804012	2.65E-49	-1.69E-46
MS.gene050298	MS.gene053383	0.838138	3.44E-57	-1.69E-46
MS.gene050563	MS.gene053383	0.898841	3.57E-77	-1.69E-46
MS.gene050584	MS.gene053383	0.841391	4.89E-58	-1.69E-46
MS.gene050585	MS.gene053383	0.843996	9.94E-59	-1.69E-46
MS.gene050587	MS.gene053383	0.835504	1.62E-56	-1.69E-46
MS.gene05143	MS.gene053383	0.832826	7.58E-56	-1.69E-46
MS.gene051789	MS.gene053383	0.828052	1.11E-54	-1.69E-46
MS.gene052142	MS.gene053383	0.874771	5.20E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053383.t1	MTR_1g442860	97.196	214	6	0	1	214	1	214	2.46e-155	429
MS.gene053383.t1	MTR_1g075990	79.474	190	33	2	19	208	13	196	1.73e-91	266
MS.gene053383.t1	MTR_5g072510	80.282	142	28	0	55	196	27	168	7.40e-88	258
MS.gene053383.t1	MTR_4g094428	83.704	135	22	0	64	198	45	179	7.47e-87	256
MS.gene053383.t1	MTR_7g097030	75.385	195	47	1	1	195	1	194	1.14e-86	255
MS.gene053383.t1	MTR_1g069825	72.308	195	41	1	1	195	1	182	1.59e-84	250
MS.gene053383.t1	MTR_3g031830	70.760	171	39	2	37	196	3	173	2.96e-76	229
MS.gene053383.t1	MTR_2g092950	71.724	145	41	0	44	188	2	146	4.05e-75	224
MS.gene053383.t1	MTR_4g079930	74.436	133	34	0	56	188	20	152	1.21e-74	223
MS.gene053383.t1	MTR_2g076400	65.644	163	55	1	34	195	1	163	1.27e-73	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053383.t1	AT2G31160	84.277	159	25	0	38	196	27	185	6.70e-88	258
MS.gene053383.t1	AT1G07090	77.551	147	28	1	51	197	22	163	9.40e-87	254
MS.gene053383.t1	AT3G23290	95.238	126	6	0	64	189	47	172	5.41e-82	243
MS.gene053383.t1	AT5G58500	80.741	135	25	1	63	196	17	151	9.47e-82	241
MS.gene053383.t1	AT5G28490	80.405	148	23	1	47	194	13	154	1.99e-75	226
MS.gene053383.t1	AT2G42610	77.344	128	29	0	61	188	21	148	7.17e-73	219
MS.gene053383.t1	AT2G42610	77.344	128	29	0	61	188	21	148	7.17e-73	219
MS.gene053383.t1	AT3G04510	75.168	149	37	0	46	194	14	162	6.17e-72	217
MS.gene053383.t1	AT1G78815	62.585	147	55	0	64	210	39	185	1.69e-66	203
MS.gene053383.t1	AT4G18610	64.138	145	51	1	45	188	17	161	5.39e-64	197

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Find 48 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTTGAAGAGAATTCA+TGG	0.377394	1.4:-27086103	None:intergenic
AAGCCAGAAGCTAATCCTTT+TGG	0.361490	1.4:+27086576	MS.gene053383:CDS
ACTTTACCTTCGCGAAGTTA+GGG	0.398859	1.4:+27086614	MS.gene053383:CDS
AGAAGAGATTGGAACACATT+TGG	0.367128	1.4:+27086315	MS.gene053383:CDS
AGAATCAAAAGAGAAGAGAT+TGG	0.459394	1.4:+27086304	MS.gene053383:CDS
AGAGGACAAGGACATGGTGC+AGG	0.565916	1.4:-27086483	None:intergenic
AGAGTGAAAGTGGTGGTCTA+TGG	0.493036	1.4:-27086353	None:intergenic
CAACGTGAGAGTGAAAGTGG+TGG	0.746060	1.4:-27086360	None:intergenic
CACGCTTGGCGAAGAGGACA+AGG	0.527749	1.4:-27086495	None:intergenic
CATCAAGACTACCCCACGCT+TGG	0.543485	1.4:-27086509	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATCAAAAGAGAAGAGAT+TGG	+	chr1.4:27086304-27086323	MS.gene053383:CDS	30.0%
GTAGTTGTATTATTTGATGG+TGG	-	chr1.4:27086714-27086733	None:intergenic	30.0%
AGAAGAGATTGGAACACATT+TGG	+	chr1.4:27086315-27086334	MS.gene053383:CDS	35.0%
CGACCAATTTGGAAAAACAA+AGG	+	chr1.4:27086419-27086438	MS.gene053383:CDS	35.0%
GGATTTGGATGTCCATAAAA+GGG	-	chr1.4:27086462-27086481	None:intergenic	35.0%
TGGATTTGGATGTCCATAAA+AGG	-	chr1.4:27086463-27086482	None:intergenic	35.0%
ACTTTACCTTCGCGAAGTTA+GGG	+	chr1.4:27086614-27086633	MS.gene053383:CDS	40.0%
GATTCTCAAGCTAAAGCTAG+AGG	+	chr1.4:27086636-27086655	MS.gene053383:CDS	40.0%
TCATCGTCATCGATGATGAT+GGG	-	chr1.4:27086188-27086207	None:intergenic	40.0%
TGTTGTAGATGACGATGGTA+TGG	-	chr1.4:27086211-27086230	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	27086105	27086749	27086105	ID=MS.gene053383
chr1.4	mRNA	27086105	27086749	27086105	ID=MS.gene053383.t1;Parent=MS.gene053383
chr1.4	exon	27086105	27086749	27086105	ID=MS.gene053383.t1.exon1;Parent=MS.gene053383.t1
chr1.4	CDS	27086105	27086749	27086105	ID=cds.MS.gene053383.t1;Parent=MS.gene053383.t1

Gene Sequence

>MS.gene053383

ATGAATTCTCTTCAAGAATTTGAATCATCAACCAAAAACAAAGACATGATGAACACAAACCCTATGATCAACATAACAAACCCATCATCATCGATGACGATGACCATACCATCGTCATCTACAACATCAGCATCATCCTCGTCCACAACAACAACATCACCACCATCAACAACATCAACAACAACACCAAGTAGATACGAGAATCAAAAGAGAAGAGATTGGAACACATTTGGACAATACCTAAGAAACCATAGACCACCACTTTCACTCTCACGTTGTAGTGGAGCTCATGTCCTTGAATTCTTGCGTTACCTCGACCAATTTGGAAAAACAAAGGTTCACACTCAGATTTGTCCCTTTTATGGACATCCAAATCCACCTGCACCATGTCCTTGTCCTCTTCGCCAAGCGTGGGGTAGTCTTGATGCACTCATTGGGAGACTTAGAGCTGCTTTTGAAGAAAATGGTGGGAAGCCAGAAGCTAATCCTTTTGGTGCTCGTGCTGTTCGACTTTACCTTCGCGAAGTTAGGGATTCTCAAGCTAAAGCTAGAGGAATTAGTTATGAGAAAAAGAAGCGCAAGCGTCCGCCTCAGCCGCCACCACCACCACCATCAAATAATACAACTACAACTGATCTTCACTAG

Protein sequence

>MS.gene053383.t1

MNSLQEFESSTKNKDMMNTNPMINITNPSSSMTMTIPSSSTTSASSSSTTTTSPPSTTSTTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQPPPPPPSNNTTTTDLH