Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38565.t1 | XP_003602873.2 | 86 | 867 | 48 | 4 | 3 | 810 | 41 | 893 | 0.00E+00 | 1354 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38565.t1 | Q6IMT1 | 51.0 | 870 | 348 | 7 | 9 | 810 | 43 | 902 | 9.6e-232 | 804.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38565.t1 | G7J4I8 | 86.0 | 867 | 48 | 4 | 3 | 810 | 41 | 893 | 0.0e+00 | 1354.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051795 | MS.gene38565 | 0.848592 | 5.56E-60 | -1.69E-46 |
| MS.gene051826 | MS.gene38565 | 0.845204 | 4.70E-59 | -1.69E-46 |
| MS.gene056301 | MS.gene38565 | 0.853942 | 1.71E-61 | -1.69E-46 |
| MS.gene056302 | MS.gene38565 | 0.894799 | 1.76E-75 | -1.69E-46 |
| MS.gene060347 | MS.gene38565 | 0.869835 | 2.30E-66 | -1.69E-46 |
| MS.gene060349 | MS.gene38565 | 0.851442 | 8.85E-61 | -1.69E-46 |
| MS.gene060350 | MS.gene38565 | 0.805772 | 1.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38565.t1 | MTR_3g099880 | 85.484 | 868 | 53 | 6 | 2 | 810 | 40 | 893 | 0.0 | 1414 |
| MS.gene38565.t1 | MTR_5g066650 | 59.854 | 548 | 196 | 10 | 2 | 539 | 40 | 573 | 0.0 | 592 |
| MS.gene38565.t1 | MTR_5g066650 | 72.549 | 306 | 77 | 2 | 510 | 810 | 603 | 906 | 9.67e-135 | 443 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38565.t1 | AT1G58250 | 48.454 | 873 | 366 | 12 | 9 | 810 | 47 | 906 | 0.0 | 759 |
| MS.gene38565.t1 | AT1G58250 | 48.454 | 873 | 366 | 12 | 9 | 810 | 47 | 906 | 0.0 | 758 |
| MS.gene38565.t1 | AT5G49680 | 45.528 | 861 | 394 | 9 | 20 | 810 | 48 | 903 | 0.0 | 675 |
Find 186 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCGATCTCCTGTGAATT+TGG | 0.157662 | 3.2:+82901114 | MS.gene38565:CDS |
| TTGATTTCAACAGTATATTT+TGG | 0.207630 | 3.2:-82900883 | None:intergenic |
| AGTGTTTGCTGCTGCTTTGA+TGG | 0.239581 | 3.2:-82901786 | None:intergenic |
| TGTCCTGCAGCTGAAGTTAT+TGG | 0.244072 | 3.2:+82908141 | MS.gene38565:CDS |
| AACAATGCCACCTTTGTTAC+TGG | 0.248409 | 3.2:-82907989 | None:intergenic |
| TGTGACCAGTTATCTAATTT+AGG | 0.265616 | 3.2:+82901012 | MS.gene38565:CDS |
| GGACTGTTTCTCTTTGTTCA+TGG | 0.286030 | 3.2:-82907906 | None:intergenic |
| ACTCGAAAATCCCGGGCTTC+GGG | 0.289183 | 3.2:+82900535 | MS.gene38565:CDS |
| TGTAGAAATGTTAAGTATTT+CGG | 0.291514 | 3.2:+82908294 | MS.gene38565:CDS |
| TCTGCTCTAACCGACGAAAT+TGG | 0.295173 | 3.2:-82906351 | None:intergenic |
| AACTCGAAAATCCCGGGCTT+CGG | 0.297924 | 3.2:+82900534 | MS.gene38565:CDS |
| CTAACTCCGTCAGTGTTATT+AGG | 0.299402 | 3.2:+82901736 | MS.gene38565:CDS |
| CTCATGGTCGAGATGCTAAT+TGG | 0.299813 | 3.2:+82908200 | MS.gene38565:CDS |
| GACCCCAAGCGTGTTAATTA+TGG | 0.314948 | 3.2:+82907746 | MS.gene38565:CDS |
| CAGATTAACACTTGGAGCTT+TGG | 0.316417 | 3.2:-82900460 | None:intergenic |
| ATCTGTCTATCAGGAATATA+TGG | 0.316572 | 3.2:+82907955 | MS.gene38565:CDS |
| TTGATATTACAGCTTCTTAG+AGG | 0.320359 | 3.2:+82904961 | MS.gene38565:intron |
| GGAGATATTAAAGTTGGATT+TGG | 0.320903 | 3.2:+82905002 | MS.gene38565:CDS |
| AGACAGAGTACTTGAGCTTC+TGG | 0.335772 | 3.2:-82907856 | None:intergenic |
| TGTAAATAATTTACCTGTAC+AGG | 0.337721 | 3.2:-82905042 | None:intergenic |
| CAAGAAACTACCACTGAATC+AGG | 0.339057 | 3.2:+82908226 | MS.gene38565:CDS |
| CTCGATCTACTGAGGATGTT+GGG | 0.339437 | 3.2:+82904797 | MS.gene38565:CDS |
| AGAGGTGTTCTGTATATGTT+TGG | 0.341123 | 3.2:+82907690 | MS.gene38565:CDS |
| GACTTACGCTTAGCTTCAAC+GGG | 0.348493 | 3.2:+82908401 | MS.gene38565:CDS |
| GGGCGTTTAACAAAATCTTC+AGG | 0.355352 | 3.2:+82907635 | MS.gene38565:CDS |
| GCTAAATTTGTACGGCGATC+AGG | 0.374589 | 3.2:+82908025 | MS.gene38565:CDS |
| TAATTAACACGCTTGGGGTC+TGG | 0.378320 | 3.2:-82907743 | None:intergenic |
| CCTCAGTAGAATATAAATAA+AGG | 0.380647 | 3.2:-82900263 | None:intergenic |
| TGCAAACAACATTTCGAATA+CGG | 0.382602 | 3.2:+82907289 | MS.gene38565:CDS |
| AGAGGGAAGTGGATGATTAT+AGG | 0.383442 | 3.2:+82900559 | MS.gene38565:CDS |
| GAGCCATAATTAACACGCTT+GGG | 0.384517 | 3.2:-82907749 | None:intergenic |
| AACCTTTGCAATGTGCATAA+TGG | 0.387499 | 3.2:-82907417 | None:intergenic |
| CAGTTCTATGTTTCCCGAAA+AGG | 0.387682 | 3.2:+82901827 | MS.gene38565:CDS |
| CATCCTGGAGATATTAAAGT+TGG | 0.392873 | 3.2:+82904996 | MS.gene38565:CDS |
| CACCACCTAAATTAGATAAC+TGG | 0.393765 | 3.2:-82901017 | None:intergenic |
| ACTTCCCTCTTCCCGAAGCC+CGG | 0.396459 | 3.2:-82900546 | None:intergenic |
| AAGAGCCAGATCTGTCTATC+AGG | 0.398627 | 3.2:+82907946 | MS.gene38565:CDS |
| TTCTCTGAAAATGCTCGTAT+AGG | 0.413108 | 3.2:+82908364 | MS.gene38565:CDS |
| TGGTTAAATACAGGCTGATC+TGG | 0.414713 | 3.2:+82900668 | MS.gene38565:intron |
| ATAATAGATGTCTCAGTAGA+TGG | 0.415516 | 3.2:+82907788 | MS.gene38565:CDS |
| CGCTTAGCTTCAACGGGGCT+AGG | 0.424551 | 3.2:+82908407 | MS.gene38565:CDS |
| ACCACTGAATCAGGGCATCT+TGG | 0.430625 | 3.2:+82908235 | MS.gene38565:CDS |
| TGGAGTTGATGGTATGGTTC+AGG | 0.436166 | 3.2:+82908330 | MS.gene38565:CDS |
| TGCAAAATGCTAAATTTGTA+CGG | 0.436479 | 3.2:+82908017 | MS.gene38565:CDS |
| ATCCTCAGTAGATCGAGATT+TGG | 0.436824 | 3.2:-82904791 | None:intergenic |
| GTACATCAGGCTCCCACCTA+AGG | 0.437822 | 3.2:-82908099 | None:intergenic |
| CGCCAGTCGCTGGTCAAACT+TGG | 0.443547 | 3.2:+82900415 | MS.gene38565:CDS |
| CTATGGCAGCAAAGGATGCC+TGG | 0.443912 | 3.2:-82901059 | None:intergenic |
| CTTCCCTCTTCCCGAAGCCC+GGG | 0.444397 | 3.2:-82900545 | None:intergenic |
| TGGTATTCGTTGGAAGTAGT+AGG | 0.446179 | 3.2:-82907836 | None:intergenic |
| TTACAGCTTCTTAGAGGAGC+TGG | 0.446237 | 3.2:+82904967 | MS.gene38565:intron |
| AAGAAGAAATATACCTATCA+TGG | 0.446600 | 3.2:-82901137 | None:intergenic |
| AGGAATATATGGAGGAAAAT+CGG | 0.449792 | 3.2:+82907966 | MS.gene38565:CDS |
| GAGGTGTTCTGTATATGTTT+GGG | 0.451812 | 3.2:+82907691 | MS.gene38565:CDS |
| GTATATGTTTGGGGCGAGGT+AGG | 0.453882 | 3.2:+82907701 | MS.gene38565:CDS |
| ACAAAATTCACATCCAACTT+TGG | 0.454248 | 3.2:-82904709 | None:intergenic |
| TTAAGTATTTCGGCTGGGCT+AGG | 0.456743 | 3.2:+82908304 | MS.gene38565:CDS |
| GGGCTAGGAGATGGAGTTGA+TGG | 0.458150 | 3.2:+82908319 | MS.gene38565:CDS |
| TGTGGTCACAACATGGGATT+GGG | 0.458191 | 3.2:+82908504 | MS.gene38565:CDS |
| AAAATATACTGTTGAAATCA+AGG | 0.458535 | 3.2:+82900885 | MS.gene38565:CDS |
| GCAAACAACATTTCGAATAC+GGG | 0.460103 | 3.2:+82907290 | MS.gene38565:CDS |
| GGGCTTCGGGAAGAGGGAAG+TGG | 0.461128 | 3.2:+82900548 | MS.gene38565:CDS |
| CAACTTCGATCTACCAAAGT+TGG | 0.465789 | 3.2:+82904696 | MS.gene38565:CDS |
| AGGAGCTGGTTCTTCCATCC+TGG | 0.468219 | 3.2:+82904981 | MS.gene38565:CDS |
| CGAATTCCCAGTGTCTCTGC+TGG | 0.468448 | 3.2:+82908460 | MS.gene38565:CDS |
| ACAGTACTTACATGATATAC+AGG | 0.472146 | 3.2:-82906591 | None:intergenic |
| ATTAGTGATAGATGTACATC+AGG | 0.476942 | 3.2:-82908112 | None:intergenic |
| TCACCAATGTGAACAAGAAT+AGG | 0.480304 | 3.2:-82900976 | None:intergenic |
| TGTGACTGATCTGGTTCTGA+AGG | 0.480396 | 3.2:+82900609 | MS.gene38565:CDS |
| AGGGGCAGAAGACCTTTCTA+TGG | 0.480497 | 3.2:-82901076 | None:intergenic |
| GGGAAACATAGAACTGTACT+TGG | 0.481331 | 3.2:-82901820 | None:intergenic |
| GGACTTACGCTTAGCTTCAA+CGG | 0.485857 | 3.2:+82908400 | MS.gene38565:CDS |
| CCTATCATGGCCAAATTCAC+AGG | 0.487680 | 3.2:-82901124 | None:intergenic |
| GGCATTATGTGGGCATTGCG+TGG | 0.487894 | 3.2:-82907815 | None:intergenic |
| AAAAGCACTATTGTCATCTC+AGG | 0.487960 | 3.2:-82906552 | None:intergenic |
| GGCGTTTAACAAAATCTTCA+GGG | 0.490572 | 3.2:+82907636 | MS.gene38565:CDS |
| TCTCGATCTACTGAGGATGT+TGG | 0.491308 | 3.2:+82904796 | MS.gene38565:CDS |
| AGCTAAGCGTAAGTCCTTCA+AGG | 0.494156 | 3.2:-82908393 | None:intergenic |
| TATATGTTTGGGGCGAGGTA+GGG | 0.496125 | 3.2:+82907702 | MS.gene38565:CDS |
| TGAGCCATAATTAACACGCT+TGG | 0.497993 | 3.2:-82907750 | None:intergenic |
| CGTATAGGAGTACTCCTTGA+AGG | 0.499049 | 3.2:+82908379 | MS.gene38565:CDS |
| CTTGAGCTTCTGGTATTCGT+TGG | 0.499469 | 3.2:-82907846 | None:intergenic |
| CATCCTTTGCTGCCATAGAA+AGG | 0.501274 | 3.2:+82901064 | MS.gene38565:CDS |
| AGGATGCAGTTCTTCGTGCC+AGG | 0.501644 | 3.2:+82901041 | MS.gene38565:CDS |
| ATGTGGTCACAACATGGGAT+TGG | 0.501907 | 3.2:+82908503 | MS.gene38565:CDS |
| GAAATGTTAAGTATTTCGGC+TGG | 0.502782 | 3.2:+82908298 | MS.gene38565:CDS |
| AAATCCCGGGCTTCGGGAAG+AGG | 0.503059 | 3.2:+82900541 | MS.gene38565:CDS |
| ATTTAACGTGACCTCTCCAC+TGG | 0.503144 | 3.2:-82901664 | None:intergenic |
| CTTGATATTCATCCGCTAAG+TGG | 0.505074 | 3.2:-82907349 | None:intergenic |
| TGTTCACATTGGTGAGCCAC+GGG | 0.506766 | 3.2:+82900984 | MS.gene38565:CDS |
| TCTTTCAAGTTCAATTTGTG+TGG | 0.508730 | 3.2:-82907927 | None:intergenic |
| CAGTTATCTAATTTAGGTGG+TGG | 0.510161 | 3.2:+82901018 | MS.gene38565:CDS |
| AATCCAACTTTAATATCTCC+AGG | 0.510183 | 3.2:-82904999 | None:intergenic |
| AGATGGACCAGCAGAGACAC+TGG | 0.513793 | 3.2:-82908467 | None:intergenic |
| TGGAAGTAGTAGGCATTATG+TGG | 0.514618 | 3.2:-82907826 | None:intergenic |
| CCTGTGAATTTGGCCATGAT+AGG | 0.514926 | 3.2:+82901124 | MS.gene38565:CDS |
| TTCTGTATATGTTTGGGGCG+AGG | 0.515080 | 3.2:+82907697 | MS.gene38565:CDS |
| ATTTCGGCTGGGCTAGGAGA+TGG | 0.515174 | 3.2:+82908310 | MS.gene38565:CDS |
| GCATTATGTGGGCATTGCGT+GGG | 0.520178 | 3.2:-82907814 | None:intergenic |
| TAATGAGCCGGCTAAAGCCT+TGG | 0.521637 | 3.2:+82906412 | MS.gene38565:CDS |
| GTCGCTGGTCAAACTTGGTG+TGG | 0.523244 | 3.2:+82900420 | MS.gene38565:CDS |
| TGTTTGGGGCGAGGTAGGGT+TGG | 0.527224 | 3.2:+82907706 | MS.gene38565:CDS |
| ATATTCCTGATAGACAGATC+TGG | 0.527234 | 3.2:-82907951 | None:intergenic |
| TTATCTAATTTAGGTGGTGG+AGG | 0.529342 | 3.2:+82901021 | MS.gene38565:CDS |
| AGCCACAATCAATTGATAGC+AGG | 0.530246 | 3.2:+82906499 | MS.gene38565:CDS |
| GTGCTACTGACATCACCCTT+AGG | 0.532606 | 3.2:+82908083 | MS.gene38565:CDS |
| AGAAGAAAACTCGAAAATCC+CGG | 0.536501 | 3.2:+82900527 | MS.gene38565:CDS |
| AGGCCTTCAAATAAAAGCCC+AGG | 0.536599 | 3.2:+82900502 | MS.gene38565:CDS |
| CACCAAGTTTGACCAGCGAC+TGG | 0.538555 | 3.2:-82900417 | None:intergenic |
| AGACCTTTCTATGGCAGCAA+AGG | 0.541091 | 3.2:-82901067 | None:intergenic |
| GGAGAAGCCAAGGCTTTAGC+CGG | 0.541453 | 3.2:-82906419 | None:intergenic |
| CTCCATTATGCACATTGCAA+AGG | 0.541853 | 3.2:+82907415 | MS.gene38565:CDS |
| TCGCTGGTCAAACTTGGTGT+GGG | 0.543274 | 3.2:+82900421 | MS.gene38565:CDS |
| CGTGTTAATTATGGCTCACA+AGG | 0.545720 | 3.2:+82907755 | MS.gene38565:CDS |
| CTGCCTATTCTTGTTCACAT+TGG | 0.546384 | 3.2:+82900973 | MS.gene38565:CDS |
| TAAACTCCAGTTGAAAATCA+AGG | 0.546838 | 3.2:-82904831 | None:intergenic |
| ACTACAGTACATGTTGAACT+TGG | 0.547519 | 3.2:+82907314 | MS.gene38565:CDS |
| TTTAACAAAATCTTCAGGGA+AGG | 0.548805 | 3.2:+82907640 | MS.gene38565:CDS |
| TCTATTGAAAACAACATCAC+AGG | 0.551350 | 3.2:+82904751 | MS.gene38565:CDS |
| TTTGGTGTGGAATCAAATTG+TGG | 0.551688 | 3.2:+82907392 | MS.gene38565:CDS |
| TTTGCATTCGACTACTCTTG+AGG | 0.553381 | 3.2:-82908432 | None:intergenic |
| TCCAAGATGCCCTGATTCAG+TGG | 0.553820 | 3.2:-82908236 | None:intergenic |
| CTAAGTCACAGATTAACACT+TGG | 0.555823 | 3.2:-82900468 | None:intergenic |
| GTACCAATAACTTCAGCTGC+AGG | 0.557783 | 3.2:-82908144 | None:intergenic |
| GCTGTTGAATCTGTATCTGT+TGG | 0.562563 | 3.2:+82900373 | MS.gene38565:CDS |
| CAACTTTAATATCTCCAGGA+TGG | 0.563608 | 3.2:-82904995 | None:intergenic |
| AAGAGCATGTGGTCACAACA+TGG | 0.564168 | 3.2:+82908497 | MS.gene38565:CDS |
| GCTCAGCTTACGCCAGTCGC+TGG | 0.565637 | 3.2:+82900405 | MS.gene38565:CDS |
| AGGAGATGGAGTTGATGGTA+TGG | 0.568901 | 3.2:+82908324 | MS.gene38565:CDS |
| TTGTTCACATTGGTGAGCCA+CGG | 0.569087 | 3.2:+82900983 | MS.gene38565:CDS |
| AATCCCGGGCTTCGGGAAGA+GGG | 0.569390 | 3.2:+82900542 | MS.gene38565:CDS |
| TGTAAAATGTGCAGTGTGGG+GGG | 0.569958 | 3.2:+82900054 | None:intergenic |
| GCAGAAACTGAAATCAAGCT+AGG | 0.571770 | 3.2:+82906369 | MS.gene38565:CDS |
| GTGTAAAATGTGCAGTGTGG+GGG | 0.573950 | 3.2:+82900053 | None:intergenic |
| CCTTTATTTATATTCTACTG+AGG | 0.574422 | 3.2:+82900263 | MS.gene38565:CDS |
| TCTGCATCAGCCAATTTCGT+CGG | 0.574768 | 3.2:+82906341 | MS.gene38565:intron |
| TAACAGCAAGCTTGAACACA+TGG | 0.581975 | 3.2:+82908168 | MS.gene38565:CDS |
| GAGTGTAAAATGTGCAGTGT+GGG | 0.583565 | 3.2:+82900051 | None:intergenic |
| CACATGGGAGATGCGTCTCA+TGG | 0.583863 | 3.2:+82908184 | MS.gene38565:CDS |
| CATAGAACTGTACTTGGAGA+AGG | 0.583911 | 3.2:-82901814 | None:intergenic |
| GACCAGTTATCTAATTTAGG+TGG | 0.584856 | 3.2:+82901015 | MS.gene38565:CDS |
| TACATCAGGCTCCCACCTAA+GGG | 0.584897 | 3.2:-82908098 | None:intergenic |
| GAAGAAAACTCGAAAATCCC+GGG | 0.588107 | 3.2:+82900528 | MS.gene38565:CDS |
| AAATGTTAAGTATTTCGGCT+GGG | 0.588776 | 3.2:+82908299 | MS.gene38565:CDS |
| TACTGACATCACCCTTAGGT+GGG | 0.588998 | 3.2:+82908087 | MS.gene38565:CDS |
| ATCCTGCTATCAATTGATTG+TGG | 0.591820 | 3.2:-82906501 | None:intergenic |
| TTAACAAAATCTTCAGGGAA+GGG | 0.592817 | 3.2:+82907641 | MS.gene38565:CDS |
| TCGATCTACTGAGGATGTTG+GGG | 0.597312 | 3.2:+82904798 | MS.gene38565:CDS |
| GATGGACCAGCAGAGACACT+GGG | 0.599291 | 3.2:-82908466 | None:intergenic |
| TGTTGAAATTCAATCTTGAG+AGG | 0.599411 | 3.2:+82907672 | MS.gene38565:CDS |
| GACAGATGAAGGAGAAGCCA+AGG | 0.608589 | 3.2:-82906429 | None:intergenic |
| AGTGCAACATCATAATGAGC+CGG | 0.608789 | 3.2:+82906400 | MS.gene38565:CDS |
| CAAACAACATTTCGAATACG+GGG | 0.609620 | 3.2:+82907291 | MS.gene38565:CDS |
| AGAGTTAAATCTCCACTTAG+CGG | 0.609642 | 3.2:+82907337 | MS.gene38565:CDS |
| AATGTGGATATATCTAAAGA+TGG | 0.611149 | 3.2:+82900913 | MS.gene38565:CDS |
| GTGGATATATCTAAAGATGG+TGG | 0.615590 | 3.2:+82900916 | MS.gene38565:CDS |
| ATCTGATGCAAAAGAGCATG+TGG | 0.615726 | 3.2:+82908486 | MS.gene38565:CDS |
| GGGTATAGTTATCAAGAGTG+TGG | 0.615857 | 3.2:+82901635 | MS.gene38565:CDS |
| CTACTGACATCACCCTTAGG+TGG | 0.619529 | 3.2:+82908086 | MS.gene38565:CDS |
| GGAAAATCGGCCAGTAACAA+AGG | 0.619655 | 3.2:+82907979 | MS.gene38565:CDS |
| GTAAATAATTTACCTGTACA+GGG | 0.622153 | 3.2:-82905041 | None:intergenic |
| AAATTTGTACGGCGATCAGG+TGG | 0.624167 | 3.2:+82908028 | MS.gene38565:CDS |
| GTTAATTATGGCTCACAAGG+TGG | 0.624909 | 3.2:+82907758 | MS.gene38565:CDS |
| AAGAAACTACCACTGAATCA+GGG | 0.631107 | 3.2:+82908227 | MS.gene38565:CDS |
| AGAGCATGTGGTCACAACAT+GGG | 0.634893 | 3.2:+82908498 | MS.gene38565:CDS |
| GGAAGTAGTAGGCATTATGT+GGG | 0.637932 | 3.2:-82907825 | None:intergenic |
| GGCCTTCAAATAAAAGCCCA+GGG | 0.639736 | 3.2:+82900503 | MS.gene38565:CDS |
| TGAAATCAAGGAATTGAATG+TGG | 0.639968 | 3.2:+82900897 | MS.gene38565:CDS |
| CATTATGTGGGCATTGCGTG+GGG | 0.639998 | 3.2:-82907813 | None:intergenic |
| TGTGGACATTTCCAGTGGAG+AGG | 0.644836 | 3.2:+82901653 | MS.gene38565:CDS |
| AGTGTAAAATGTGCAGTGTG+GGG | 0.646277 | 3.2:+82900052 | None:intergenic |
| AGCCATAATTAACACGCTTG+GGG | 0.649060 | 3.2:-82907748 | None:intergenic |
| AGGTGTTCTGTATATGTTTG+GGG | 0.656272 | 3.2:+82907692 | MS.gene38565:CDS |
| TTGTGACCTAATAACACTGA+CGG | 0.661306 | 3.2:-82901742 | None:intergenic |
| AACAGCAAGCTTGAACACAT+GGG | 0.662644 | 3.2:+82908169 | MS.gene38565:CDS |
| AGAGTGTAAAATGTGCAGTG+TGG | 0.664544 | 3.2:+82900050 | None:intergenic |
| TTGATAGCAGGATCATCATG+TGG | 0.667977 | 3.2:+82906511 | MS.gene38565:CDS |
| AACTGGTCACAACTATCCCG+TGG | 0.670538 | 3.2:-82901000 | None:intergenic |
| CACCAAATCTCGATCTACTG+AGG | 0.673181 | 3.2:+82904789 | MS.gene38565:CDS |
| AAGAGTGTGGACATTTCCAG+TGG | 0.674444 | 3.2:+82901648 | MS.gene38565:CDS |
| TGTCTATCAGGAATATATGG+AGG | 0.675217 | 3.2:+82907958 | MS.gene38565:CDS |
| AAATCGGCCAGTAACAAAGG+TGG | 0.681253 | 3.2:+82907982 | MS.gene38565:CDS |
| GAAACTGAAATCAAGCTAGG+AGG | 0.681474 | 3.2:+82906372 | MS.gene38565:CDS |
| GTGACTTAGAAGTTGTGATG+AGG | 0.703035 | 3.2:+82900482 | MS.gene38565:CDS |
| GGTCACGTTAAATTTAAACG+AGG | 0.732610 | 3.2:+82901674 | MS.gene38565:CDS |
| ACTTACGCTTAGCTTCAACG+GGG | 0.847040 | 3.2:+82908402 | MS.gene38565:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82900060 | 82908525 | 82900060 | ID=MS.gene38565 |
| chr3.2 | mRNA | 82900060 | 82908525 | 82900060 | ID=MS.gene38565.t1;Parent=MS.gene38565 |
| chr3.2 | exon | 82900060 | 82900099 | 82900060 | ID=MS.gene38565.t1.exon1;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82900060 | 82900099 | 82900060 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82900238 | 82900284 | 82900238 | ID=MS.gene38565.t1.exon2;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82900238 | 82900284 | 82900238 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82900370 | 82900630 | 82900370 | ID=MS.gene38565.t1.exon3;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82900370 | 82900630 | 82900370 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82900681 | 82900689 | 82900681 | ID=MS.gene38565.t1.exon4;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82900681 | 82900689 | 82900681 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82900880 | 82901145 | 82900880 | ID=MS.gene38565.t1.exon5;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82900880 | 82901145 | 82900880 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82901629 | 82901848 | 82901629 | ID=MS.gene38565.t1.exon6;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82901629 | 82901848 | 82901629 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82904694 | 82904864 | 82904694 | ID=MS.gene38565.t1.exon7;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82904694 | 82904864 | 82904694 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82904973 | 82905050 | 82904973 | ID=MS.gene38565.t1.exon8;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82904973 | 82905050 | 82904973 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82906351 | 82906602 | 82906351 | ID=MS.gene38565.t1.exon9;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82906351 | 82906602 | 82906351 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82907263 | 82907436 | 82907263 | ID=MS.gene38565.t1.exon10;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82907263 | 82907436 | 82907263 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| chr3.2 | exon | 82907614 | 82908525 | 82907614 | ID=MS.gene38565.t1.exon11;Parent=MS.gene38565.t1 |
| chr3.2 | CDS | 82907614 | 82908525 | 82907614 | ID=cds.MS.gene38565.t1;Parent=MS.gene38565.t1 |
| Gene Sequence |
| Protein sequence |
