Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38670.t1 | XP_024634225.1 | 91.2 | 329 | 24 | 1 | 1 | 324 | 1 | 329 | 8.10E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38670.t1 | Q9FMH5 | 50.7 | 341 | 146 | 5 | 4 | 324 | 12 | 350 | 6.4e-86 | 318.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38670.t1 | A0A396IXB1 | 91.2 | 329 | 24 | 1 | 1 | 324 | 1 | 329 | 5.8e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056041 | MS.gene38670 | 0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene060473 | MS.gene38670 | 0.800267 | 1.56E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38670.t1 | MTR_3g102560 | 88.754 | 329 | 27 | 3 | 1 | 324 | 1 | 324 | 0.0 | 566 |
| MS.gene38670.t1 | MTR_3g102540 | 67.816 | 261 | 78 | 2 | 64 | 324 | 14 | 268 | 2.38e-126 | 362 |
| MS.gene38670.t1 | MTR_3g102510 | 56.598 | 341 | 126 | 6 | 2 | 324 | 1 | 337 | 3.19e-125 | 362 |
| MS.gene38670.t1 | MTR_3g102520 | 53.352 | 358 | 130 | 7 | 2 | 324 | 1 | 356 | 2.03e-122 | 356 |
| MS.gene38670.t1 | MTR_1g018680 | 52.770 | 343 | 139 | 4 | 5 | 324 | 14 | 356 | 6.75e-121 | 352 |
| MS.gene38670.t1 | MTR_3g102530 | 52.991 | 351 | 135 | 5 | 2 | 324 | 1 | 349 | 2.78e-117 | 342 |
| MS.gene38670.t1 | MTR_3g088415 | 52.490 | 261 | 122 | 1 | 64 | 324 | 245 | 503 | 3.39e-90 | 278 |
| MS.gene38670.t1 | MTR_3g088405 | 43.030 | 330 | 174 | 5 | 1 | 324 | 187 | 508 | 1.51e-82 | 259 |
| MS.gene38670.t1 | MTR_3g107970 | 46.250 | 320 | 151 | 4 | 12 | 317 | 157 | 469 | 2.15e-82 | 257 |
| MS.gene38670.t1 | MTR_1g011470 | 45.578 | 294 | 154 | 2 | 28 | 317 | 126 | 417 | 1.60e-80 | 251 |
| MS.gene38670.t1 | MTR_2g102550 | 46.743 | 261 | 136 | 2 | 64 | 324 | 172 | 429 | 1.40e-73 | 233 |
| MS.gene38670.t1 | MTR_2g102520 | 47.059 | 255 | 131 | 2 | 64 | 316 | 220 | 472 | 8.72e-73 | 233 |
| MS.gene38670.t1 | MTR_3g088415 | 55.224 | 201 | 88 | 1 | 64 | 264 | 245 | 443 | 2.98e-71 | 228 |
| MS.gene38670.t1 | MTR_3g088415 | 63.309 | 139 | 49 | 1 | 64 | 202 | 245 | 381 | 1.53e-54 | 183 |
| MS.gene38670.t1 | MTR_8g074000 | 36.522 | 230 | 130 | 3 | 87 | 311 | 201 | 419 | 4.17e-43 | 154 |
| MS.gene38670.t1 | MTR_5g088980 | 35.769 | 260 | 157 | 5 | 44 | 302 | 150 | 400 | 2.94e-42 | 151 |
| MS.gene38670.t1 | MTR_5g023790 | 34.902 | 255 | 157 | 4 | 57 | 311 | 170 | 415 | 6.06e-42 | 150 |
| MS.gene38670.t1 | MTR_7g089080 | 31.024 | 332 | 211 | 8 | 1 | 319 | 129 | 455 | 1.47e-40 | 151 |
| MS.gene38670.t1 | MTR_5g023790 | 37.500 | 216 | 122 | 4 | 57 | 267 | 170 | 377 | 3.14e-36 | 134 |
| MS.gene38670.t1 | MTR_5g023790 | 41.781 | 146 | 82 | 2 | 57 | 202 | 170 | 312 | 8.63e-28 | 111 |
| MS.gene38670.t1 | MTR_3g060770 | 32.719 | 217 | 136 | 7 | 90 | 300 | 56 | 268 | 1.88e-20 | 89.7 |
| MS.gene38670.t1 | MTR_3g060410 | 32.836 | 201 | 126 | 6 | 90 | 285 | 131 | 327 | 4.58e-20 | 90.1 |
| MS.gene38670.t1 | MTR_3g060400 | 31.674 | 221 | 139 | 7 | 90 | 305 | 52 | 265 | 1.44e-19 | 87.4 |
| MS.gene38670.t1 | MTR_3g460990 | 31.674 | 221 | 139 | 7 | 90 | 305 | 52 | 265 | 1.44e-19 | 87.4 |
| MS.gene38670.t1 | MTR_3g060820 | 33.333 | 216 | 119 | 8 | 90 | 288 | 46 | 253 | 1.56e-19 | 87.0 |
| MS.gene38670.t1 | MTR_3g061680 | 34.673 | 199 | 113 | 7 | 90 | 279 | 46 | 236 | 4.09e-19 | 85.9 |
| MS.gene38670.t1 | MTR_5g044040 | 37.500 | 72 | 45 | 0 | 116 | 187 | 7 | 78 | 4.27e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38670.t1 | AT5G43080 | 49.853 | 341 | 149 | 4 | 4 | 324 | 12 | 350 | 2.36e-115 | 338 |
| MS.gene38670.t1 | AT1G47230 | 48.276 | 348 | 150 | 3 | 6 | 324 | 14 | 360 | 1.44e-113 | 333 |
| MS.gene38670.t1 | AT5G43080 | 49.267 | 341 | 146 | 5 | 4 | 324 | 12 | 345 | 2.82e-113 | 332 |
| MS.gene38670.t1 | AT1G47230 | 48.138 | 349 | 150 | 4 | 6 | 324 | 14 | 361 | 1.10e-111 | 329 |
| MS.gene38670.t1 | AT1G47210 | 46.176 | 353 | 154 | 5 | 4 | 320 | 11 | 363 | 1.07e-107 | 319 |
| MS.gene38670.t1 | AT1G47220 | 51.056 | 284 | 134 | 1 | 42 | 320 | 34 | 317 | 1.58e-97 | 291 |
| MS.gene38670.t1 | AT1G44110 | 46.645 | 313 | 157 | 3 | 12 | 324 | 155 | 457 | 9.97e-86 | 265 |
| MS.gene38670.t1 | AT5G11300 | 53.012 | 249 | 117 | 0 | 73 | 321 | 184 | 432 | 1.18e-81 | 254 |
| MS.gene38670.t1 | AT5G25380 | 49.615 | 260 | 129 | 1 | 60 | 319 | 174 | 431 | 3.91e-79 | 248 |
| MS.gene38670.t1 | AT5G25380 | 49.615 | 260 | 129 | 1 | 60 | 319 | 174 | 431 | 3.91e-79 | 248 |
| MS.gene38670.t1 | AT5G25380 | 49.615 | 260 | 129 | 1 | 60 | 319 | 180 | 437 | 5.18e-79 | 248 |
| MS.gene38670.t1 | AT1G15570 | 50.000 | 244 | 122 | 0 | 73 | 316 | 200 | 443 | 1.73e-77 | 244 |
| MS.gene38670.t1 | AT1G80370 | 50.000 | 252 | 125 | 1 | 73 | 324 | 209 | 459 | 1.08e-76 | 242 |
| MS.gene38670.t1 | AT1G77390 | 46.743 | 261 | 137 | 1 | 64 | 324 | 183 | 441 | 1.11e-74 | 236 |
| MS.gene38670.t1 | AT5G25380 | 49.393 | 247 | 123 | 1 | 60 | 306 | 174 | 418 | 4.18e-74 | 234 |
| MS.gene38670.t1 | AT5G11300 | 55.208 | 192 | 86 | 0 | 73 | 264 | 184 | 375 | 1.50e-64 | 209 |
| MS.gene38670.t1 | AT3G11520 | 41.304 | 230 | 128 | 3 | 87 | 316 | 183 | 405 | 1.74e-45 | 160 |
| MS.gene38670.t1 | AT5G06150 | 35.689 | 283 | 163 | 5 | 29 | 311 | 161 | 424 | 4.58e-45 | 159 |
| MS.gene38670.t1 | AT3G11520 | 44.444 | 198 | 104 | 2 | 87 | 284 | 183 | 374 | 3.73e-43 | 153 |
| MS.gene38670.t1 | AT4G37490 | 36.364 | 286 | 162 | 9 | 38 | 314 | 142 | 416 | 6.92e-43 | 153 |
| MS.gene38670.t1 | AT2G26760 | 39.300 | 257 | 146 | 5 | 60 | 315 | 131 | 378 | 1.09e-41 | 149 |
| MS.gene38670.t1 | AT1G76310 | 37.447 | 235 | 137 | 5 | 81 | 313 | 197 | 423 | 5.33e-40 | 145 |
| MS.gene38670.t1 | AT1G20610 | 35.398 | 226 | 138 | 3 | 87 | 311 | 202 | 420 | 4.76e-39 | 143 |
| MS.gene38670.t1 | AT2G17620 | 37.643 | 263 | 155 | 5 | 60 | 322 | 172 | 425 | 1.20e-38 | 142 |
| MS.gene38670.t1 | AT4G35620 | 38.912 | 239 | 139 | 3 | 81 | 319 | 192 | 423 | 3.59e-38 | 140 |
| MS.gene38670.t1 | AT1G16330 | 35.047 | 214 | 133 | 2 | 89 | 302 | 422 | 629 | 7.90e-36 | 137 |
| MS.gene38670.t1 | AT1G47210 | 41.209 | 182 | 71 | 5 | 4 | 149 | 11 | 192 | 5.58e-35 | 126 |
| MS.gene38670.t1 | AT1G76310 | 39.896 | 193 | 106 | 5 | 81 | 271 | 197 | 381 | 1.49e-34 | 130 |
| MS.gene38670.t1 | AT1G76310 | 33.460 | 263 | 137 | 6 | 81 | 313 | 197 | 451 | 3.68e-34 | 130 |
| MS.gene38670.t1 | AT4G35620 | 42.347 | 196 | 106 | 3 | 81 | 276 | 192 | 380 | 4.52e-33 | 126 |
| MS.gene38670.t1 | AT5G06150 | 39.080 | 174 | 93 | 3 | 29 | 202 | 161 | 321 | 6.11e-30 | 116 |
| MS.gene38670.t1 | AT1G76310 | 46.341 | 123 | 64 | 2 | 81 | 202 | 197 | 318 | 8.11e-27 | 108 |
| MS.gene38670.t1 | AT1G20590 | 35.669 | 157 | 95 | 2 | 123 | 279 | 66 | 216 | 1.30e-23 | 98.2 |
| MS.gene38670.t1 | AT1G14750 | 29.911 | 224 | 142 | 6 | 65 | 280 | 184 | 400 | 5.11e-15 | 75.9 |
| MS.gene38670.t1 | AT1G14750 | 29.515 | 227 | 146 | 6 | 65 | 283 | 352 | 572 | 7.12e-15 | 75.9 |
| MS.gene38670.t1 | AT1G14750 | 30.928 | 194 | 121 | 5 | 65 | 250 | 184 | 372 | 8.80e-15 | 75.1 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 236 | 391 | 1.11e-14 | 75.1 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 222 | 377 | 1.12e-14 | 75.1 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 236 | 391 | 1.21e-14 | 74.7 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 236 | 391 | 1.21e-14 | 74.7 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 236 | 391 | 1.21e-14 | 74.7 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 236 | 391 | 1.21e-14 | 74.7 |
| MS.gene38670.t1 | AT1G14750 | 29.911 | 224 | 143 | 6 | 65 | 280 | 352 | 569 | 1.36e-14 | 74.7 |
| MS.gene38670.t1 | AT1G34460 | 30.526 | 190 | 98 | 5 | 13 | 202 | 236 | 391 | 1.67e-14 | 74.3 |
| MS.gene38670.t1 | AT1G34460 | 31.609 | 174 | 86 | 4 | 29 | 202 | 248 | 388 | 7.50e-14 | 72.4 |
| MS.gene38670.t1 | AT1G34460 | 31.609 | 174 | 86 | 4 | 29 | 202 | 248 | 388 | 7.50e-14 | 72.4 |
Find 60 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCTGAGCTAAGTTTAT+TGG | 0.148419 | 3.3:+84758448 | MS.gene38670:CDS |
| CACGTTTATTCATGTGATTT+TGG | 0.168414 | 3.3:-84757112 | None:intergenic |
| TGTGAGATTCTTGCCTTCTT+TGG | 0.236242 | 3.3:+84758481 | MS.gene38670:CDS |
| ACTTGCCCAGGGATAAGTTT+TGG | 0.267661 | 3.3:-84758546 | None:intergenic |
| TGCTTGCTAGATTCATTGTT+TGG | 0.311037 | 3.3:+84758522 | MS.gene38670:CDS |
| TCGCTGTTTCTTACATAGAT+AGG | 0.328623 | 3.3:+84757513 | MS.gene38670:CDS |
| TGAGAGGAATATTGATTGAT+TGG | 0.331773 | 3.3:+84757441 | MS.gene38670:CDS |
| CAAGACCCTAGATAATGATA+TGG | 0.336031 | 3.3:+84758117 | MS.gene38670:CDS |
| TGAAGCTTGACCCTATTGAT+AGG | 0.352654 | 3.3:-84757551 | None:intergenic |
| AATGAGATTGGTTGGTGAAT+TGG | 0.355919 | 3.3:-84757153 | None:intergenic |
| ATGAGATTGGTTGGTGAATT+GGG | 0.379474 | 3.3:-84757152 | None:intergenic |
| TATACCCAGAGTATTCTTGC+AGG | 0.389030 | 3.3:-84758690 | None:intergenic |
| ACGCATTCCTTCAACTCAAC+TGG | 0.389273 | 3.3:-84758715 | None:intergenic |
| CGATTGAGAAACAATGAGAT+TGG | 0.404565 | 3.3:-84757165 | None:intergenic |
| GACTGCCCATATCATTATCT+AGG | 0.425727 | 3.3:-84758123 | None:intergenic |
| TAGGGTCAAGCTTCAATTGT+TGG | 0.434090 | 3.3:+84757559 | MS.gene38670:CDS |
| GAGATTCTTGCCTTCTTTGG+TGG | 0.445209 | 3.3:+84758484 | MS.gene38670:CDS |
| ATCTCCATGTAATCCTTCAT+TGG | 0.446797 | 3.3:-84757392 | None:intergenic |
| TTATAAGCACTAGAAACAAC+TGG | 0.474116 | 3.3:-84757242 | None:intergenic |
| AGGGTCAAGCTTCAATTGTT+GGG | 0.475156 | 3.3:+84757560 | MS.gene38670:CDS |
| TTTGGCCCAAAACTTATCCC+TGG | 0.483015 | 3.3:+84758540 | MS.gene38670:CDS |
| GTATAAACCAGTTGAGTTGA+AGG | 0.485366 | 3.3:+84758708 | MS.gene38670:CDS |
| ATGAATAAACGTGTCGTGTT+GGG | 0.485891 | 3.3:+84757122 | MS.gene38670:CDS |
| ATCGACGCAGCCACCAAAGA+AGG | 0.504235 | 3.3:-84758494 | None:intergenic |
| AAAGCATAATTCTTCGACAT+GGG | 0.505661 | 3.3:-84757728 | None:intergenic |
| AACAGATCACTTGGTAAATG+AGG | 0.505822 | 3.3:-84758922 | None:intergenic |
| AAGGGTCATTTGAAGCTACT+CGG | 0.518059 | 3.3:+84758773 | MS.gene38670:CDS |
| TCAGCCCTGCAAGAATACTC+TGG | 0.519125 | 3.3:+84758685 | MS.gene38670:CDS |
| CATAATTCTTCGACATGGGG+TGG | 0.521855 | 3.3:-84757724 | None:intergenic |
| GGCTTACGATGCAATGTACA+TGG | 0.535999 | 3.3:-84757591 | None:intergenic |
| TTGGCCCAAAACTTATCCCT+GGG | 0.540302 | 3.3:+84758541 | MS.gene38670:CDS |
| GACAAAGAGAAGACCAATGA+AGG | 0.540350 | 3.3:+84757379 | MS.gene38670:CDS |
| GAAGCTTGACCCTATTGATA+GGG | 0.540822 | 3.3:-84757550 | None:intergenic |
| AAGACCCTAGATAATGATAT+GGG | 0.542783 | 3.3:+84758118 | MS.gene38670:CDS |
| AAGACCAATGAAGGATTACA+TGG | 0.547107 | 3.3:+84757388 | MS.gene38670:CDS |
| CTTGGTAAATGAGGAGGCGA+AGG | 0.552246 | 3.3:-84758913 | None:intergenic |
| GACCCATAAGATTACCTCCA+TGG | 0.557990 | 3.3:-84757276 | None:intergenic |
| CTGTATATGTCAAGACGGGA+AGG | 0.561150 | 3.3:+84758754 | MS.gene38670:CDS |
| TCAAATTAAAACAGATCACT+TGG | 0.561830 | 3.3:-84758931 | None:intergenic |
| CATGAATAAACGTGTCGTGT+TGG | 0.569019 | 3.3:+84757121 | MS.gene38670:CDS |
| CAGCCCTGCAAGAATACTCT+GGG | 0.579144 | 3.3:+84758686 | MS.gene38670:CDS |
| TGAGAAACAATGAGATTGGT+TGG | 0.581513 | 3.3:-84757161 | None:intergenic |
| TTATAACTATCTTCGATCCA+TGG | 0.584174 | 3.3:+84757259 | MS.gene38670:CDS |
| ATAATTCTTCGACATGGGGT+GGG | 0.585139 | 3.3:-84757723 | None:intergenic |
| AGGGTCATTTGAAGCTACTC+GGG | 0.585830 | 3.3:+84758774 | MS.gene38670:CDS |
| ATGATCTGTATATGTCAAGA+CGG | 0.591093 | 3.3:+84758749 | MS.gene38670:CDS |
| TGATCTGTATATGTCAAGAC+GGG | 0.596030 | 3.3:+84758750 | MS.gene38670:CDS |
| ATACCCAGAGTATTCTTGCA+GGG | 0.596799 | 3.3:-84758689 | None:intergenic |
| ACTGCCCATATCATTATCTA+GGG | 0.603439 | 3.3:-84758122 | None:intergenic |
| GGAGAAATACAAGCAGTACA+AGG | 0.603442 | 3.3:+84758795 | MS.gene38670:CDS |
| TAAAGCATAATTCTTCGACA+TGG | 0.621082 | 3.3:-84757729 | None:intergenic |
| AAGCATAATTCTTCGACATG+GGG | 0.631386 | 3.3:-84757727 | None:intergenic |
| AGATCACTTGGTAAATGAGG+AGG | 0.642418 | 3.3:-84758919 | None:intergenic |
| TTGGTAAATGAGGAGGCGAA+GGG | 0.642726 | 3.3:-84758912 | None:intergenic |
| TTGAGACTCGCTCTGCAAAG+AGG | 0.648697 | 3.3:+84757075 | MS.gene38670:CDS |
| TGTATATGTCAAGACGGGAA+GGG | 0.652672 | 3.3:+84758755 | MS.gene38670:CDS |
| GTAAATGAGGAGGCGAAGGG+AGG | 0.656266 | 3.3:-84758909 | None:intergenic |
| ATTGTAACAGTTCAAATACG+TGG | 0.709700 | 3.3:+84758882 | MS.gene38670:intron |
| TAACTATCTTCGATCCATGG+AGG | 0.713647 | 3.3:+84757262 | MS.gene38670:CDS |
| TAATACATACAACAGAGACG+AGG | 0.764399 | 3.3:+84757759 | MS.gene38670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTAAAAAAAAAA+AGG | - | chr3.3:84757326-84757345 | None:intergenic | 0.0% |
| !! | AAGTAATTAATAAACAGATT+TGG | - | chr3.3:84758182-84758201 | None:intergenic | 15.0% |
| !! | ATTATTTGCAAAATTCAAAT+CGG | - | chr3.3:84757625-84757644 | None:intergenic | 15.0% |
| !!! | AACAAATTTAAATCTTCTTT+TGG | - | chr3.3:84758013-84758032 | None:intergenic | 15.0% |
| !!! | CTTATTTTTTCGATTATAAA+AGG | + | chr3.3:84757683-84757702 | MS.gene38670:intron | 15.0% |
| !! | GTATTTGATCATATAGTTAA+TGG | + | chr3.3:84758567-84758586 | MS.gene38670:intron | 20.0% |
| !! | TATTACCAAATTAACATAGA+TGG | + | chr3.3:84758615-84758634 | MS.gene38670:intron | 20.0% |
| !!! | ATATAATTGAGATCCTTTTT+AGG | - | chr3.3:84757945-84757964 | None:intergenic | 20.0% |
| !!! | GAGATTTGATTTTTTTTAGA+TGG | + | chr3.3:84757355-84757374 | MS.gene38670:intron | 20.0% |
| !!! | TATAATTGAGATCCTTTTTA+GGG | - | chr3.3:84757944-84757963 | None:intergenic | 20.0% |
| !!! | TTTCAGATCATAAAAAGTAT+CGG | - | chr3.3:84757802-84757821 | None:intergenic | 20.0% |
| ! | AAACAAGAGAAGCAAAATAA+GGG | - | chr3.3:84758055-84758074 | None:intergenic | 25.0% |
| ! | AAATTAACATAGATGGTTGA+TGG | + | chr3.3:84758622-84758641 | MS.gene38670:intron | 25.0% |
| ! | AATAGCCAAAATAAAGTCTA+AGG | - | chr3.3:84758841-84758860 | None:intergenic | 25.0% |
| ! | AGTGAAATTATCAACATAGT+GGG | + | chr3.3:84757823-84757842 | MS.gene38670:intron | 25.0% |
| ! | ATCAACCATCTATGTTAATT+TGG | - | chr3.3:84758623-84758642 | None:intergenic | 25.0% |
| ! | CTTAAAAAAGTCTTAACAGT+GGG | - | chr3.3:84758148-84758167 | None:intergenic | 25.0% |
| ! | GACATAAGTGTTATATGTTT+GGG | + | chr3.3:84757845-84757864 | MS.gene38670:intron | 25.0% |
| ! | TAAACAAGAGAAGCAAAATA+AGG | - | chr3.3:84758056-84758075 | None:intergenic | 25.0% |
| ! | TAAGAAGAAAAATGTGAGTT+AGG | + | chr3.3:84758298-84758317 | MS.gene38670:intron | 25.0% |
| ! | TAGTGAAATTATCAACATAG+TGG | + | chr3.3:84757822-84757841 | MS.gene38670:intron | 25.0% |
| ! | TATTGATAGGGTAAAAAGAT+AGG | - | chr3.3:84757541-84757560 | None:intergenic | 25.0% |
| ! | TTGTTTATTGCTATCAATAC+AGG | + | chr3.3:84758069-84758088 | MS.gene38670:intron | 25.0% |
| !! | AATCTTCTTTTGGTAAACTA+AGG | - | chr3.3:84758003-84758022 | None:intergenic | 25.0% |
| !! | ACGTTTATTCATGTGATTTT+GGG | - | chr3.3:84757114-84757133 | None:intergenic | 25.0% |
| !! | ATAATTGAGATCCTTTTTAG+GGG | - | chr3.3:84757943-84757962 | None:intergenic | 25.0% |
| !! | ATCAATATTCCTCTCATTTT+TGG | - | chr3.3:84757437-84757456 | None:intergenic | 25.0% |
| !! | ATCTTTTTACCCTATCAATA+GGG | + | chr3.3:84757541-84757560 | MS.gene38670:CDS | 25.0% |
| !! | TATCTTTTTACCCTATCAAT+AGG | + | chr3.3:84757540-84757559 | MS.gene38670:CDS | 25.0% |
| !! | TTATTTTCCTTCTTTCTTTC+AGG | + | chr3.3:84758391-84758410 | MS.gene38670:intron | 25.0% |
| !!! | ACATTCCTTAGACTTTATTT+TGG | + | chr3.3:84758833-84758852 | MS.gene38670:intron | 25.0% |
| AAAGCATAATTCTTCGACAT+GGG | - | chr3.3:84757731-84757750 | None:intergenic | 30.0% | |
| AAATTCAAATCGGACATAGA+AGG | - | chr3.3:84757615-84757634 | None:intergenic | 30.0% | |
| AAGACCCTAGATAATGATAT+GGG | + | chr3.3:84758118-84758137 | MS.gene38670:CDS | 30.0% | |
| ATGATCTGTATATGTCAAGA+CGG | + | chr3.3:84758749-84758768 | MS.gene38670:CDS | 30.0% | |
| ATTGTAACAGTTCAAATACG+TGG | + | chr3.3:84758882-84758901 | MS.gene38670:intron | 30.0% | |
| CCTTAAAAAAGTCTTAACAG+TGG | - | chr3.3:84758149-84758168 | None:intergenic | 30.0% | |
| GGACATAAGTGTTATATGTT+TGG | + | chr3.3:84757844-84757863 | MS.gene38670:intron | 30.0% | |
| TAAAGCATAATTCTTCGACA+TGG | - | chr3.3:84757732-84757751 | None:intergenic | 30.0% | |
| TATTGTAGTTTCTGTGATAC+AGG | + | chr3.3:84758255-84758274 | MS.gene38670:intron | 30.0% | |
| TCTCAATTATATCGAGAGAT+TGG | + | chr3.3:84757953-84757972 | MS.gene38670:intron | 30.0% | |
| TTATAACTATCTTCGATCCA+TGG | + | chr3.3:84757259-84757278 | MS.gene38670:CDS | 30.0% | |
| TTATAAGCACTAGAAACAAC+TGG | - | chr3.3:84757245-84757264 | None:intergenic | 30.0% | |
| TTCATTGTCTATCTATGCTT+TGG | + | chr3.3:84758325-84758344 | MS.gene38670:intron | 30.0% | |
| ! | CACGTTTATTCATGTGATTT+TGG | - | chr3.3:84757115-84757134 | None:intergenic | 30.0% |
| ! | TGAGAGGAATATTGATTGAT+TGG | + | chr3.3:84757441-84757460 | MS.gene38670:CDS | 30.0% |
| ! | TTGATGGTTCAATGCATTTA+TGG | + | chr3.3:84758638-84758657 | MS.gene38670:intron | 30.0% |
| ! | TTTAAAGCCTGAAAGAAAGA+AGG | - | chr3.3:84758401-84758420 | None:intergenic | 30.0% |
| !! | GATCATAAAAAGTATCGGAA+TGG | - | chr3.3:84757797-84757816 | None:intergenic | 30.0% |
| !! | TTTTGGCTATTTCAATGACA+TGG | + | chr3.3:84758850-84758869 | MS.gene38670:intron | 30.0% |
| !!! | ATCAATACAGGTTTTAGAGA+TGG | + | chr3.3:84758081-84758100 | MS.gene38670:intron | 30.0% |
| !!! | CCACTGTTAAGACTTTTTTA+AGG | + | chr3.3:84758146-84758165 | MS.gene38670:CDS | 30.0% |
| AACAGATCACTTGGTAAATG+AGG | - | chr3.3:84758925-84758944 | None:intergenic | 35.0% | |
| AAGACCAATGAAGGATTACA+TGG | + | chr3.3:84757388-84757407 | MS.gene38670:CDS | 35.0% | |
| AAGCATAATTCTTCGACATG+GGG | - | chr3.3:84757730-84757749 | None:intergenic | 35.0% | |
| AATTCCTGCCCAAACTATTA+AGG | - | chr3.3:84757873-84757892 | None:intergenic | 35.0% | |
| ACTGCCCATATCATTATCTA+GGG | - | chr3.3:84758125-84758144 | None:intergenic | 35.0% | |
| ATATGATCAAATACTTGCCC+AGG | - | chr3.3:84758561-84758580 | None:intergenic | 35.0% | |
| ATCCATGGAGGTAATCTTAT+GGG | + | chr3.3:84757274-84757293 | MS.gene38670:intron | 35.0% | |
| ATCTCCATGTAATCCTTCAT+TGG | - | chr3.3:84757395-84757414 | None:intergenic | 35.0% | |
| ATGAATAAACGTGTCGTGTT+GGG | + | chr3.3:84757122-84757141 | MS.gene38670:CDS | 35.0% | |
| CAAGACCCTAGATAATGATA+TGG | + | chr3.3:84758117-84758136 | MS.gene38670:CDS | 35.0% | |
| CGATTGAGAAACAATGAGAT+TGG | - | chr3.3:84757168-84757187 | None:intergenic | 35.0% | |
| GACATTGATCCAAAAATGAG+AGG | + | chr3.3:84757425-84757444 | MS.gene38670:CDS | 35.0% | |
| TAATACATACAACAGAGACG+AGG | + | chr3.3:84757759-84757778 | MS.gene38670:CDS | 35.0% | |
| TATGATCAAATACTTGCCCA+GGG | - | chr3.3:84758560-84758579 | None:intergenic | 35.0% | |
| TCTTGCTGAGCTAAGTTTAT+TGG | + | chr3.3:84758448-84758467 | MS.gene38670:CDS | 35.0% | |
| TGAGAAACAATGAGATTGGT+TGG | - | chr3.3:84757164-84757183 | None:intergenic | 35.0% | |
| TGATCTGTATATGTCAAGAC+GGG | + | chr3.3:84758750-84758769 | MS.gene38670:CDS | 35.0% | |
| TGATTCCTTGTTAGTGTGTA+TGG | + | chr3.3:84757893-84757912 | MS.gene38670:intron | 35.0% | |
| TTTGGGTGCCTTAATAGTTT+GGG | + | chr3.3:84757862-84757881 | MS.gene38670:intron | 35.0% | |
| ! | GTTTTCCATACACACTAACA+AGG | - | chr3.3:84757901-84757920 | None:intergenic | 35.0% |
| ! | TGCTTGCTAGATTCATTGTT+TGG | + | chr3.3:84758522-84758541 | MS.gene38670:CDS | 35.0% |
| !! | AATGAGATTGGTTGGTGAAT+TGG | - | chr3.3:84757156-84757175 | None:intergenic | 35.0% |
| !! | ATGAGATTGGTTGGTGAATT+GGG | - | chr3.3:84757155-84757174 | None:intergenic | 35.0% |
| !! | GTATAAACCAGTTGAGTTGA+AGG | + | chr3.3:84758708-84758727 | MS.gene38670:CDS | 35.0% |
| !! | TCGCTGTTTCTTACATAGAT+AGG | + | chr3.3:84757513-84757532 | MS.gene38670:CDS | 35.0% |
| !! | TGGAGCATCAAAGTTTTCAT+GGG | - | chr3.3:84757225-84757244 | None:intergenic | 35.0% |
| AGAGAGATCAACCCCTAAAA+AGG | + | chr3.3:84757929-84757948 | MS.gene38670:intron | 40.0% | |
| AGATCACTTGGTAAATGAGG+AGG | - | chr3.3:84758922-84758941 | None:intergenic | 40.0% | |
| AGGGTCAAGCTTCAATTGTT+GGG | + | chr3.3:84757560-84757579 | MS.gene38670:CDS | 40.0% | |
| ATAATTCTTCGACATGGGGT+GGG | - | chr3.3:84757726-84757745 | None:intergenic | 40.0% | |
| CATGAATAAACGTGTCGTGT+TGG | + | chr3.3:84757121-84757140 | MS.gene38670:CDS | 40.0% | |
| GAAGCTTGACCCTATTGATA+GGG | - | chr3.3:84757553-84757572 | None:intergenic | 40.0% | |
| GACAAAGAGAAGACCAATGA+AGG | + | chr3.3:84757379-84757398 | MS.gene38670:CDS | 40.0% | |
| GACTGCCCATATCATTATCT+AGG | - | chr3.3:84758126-84758145 | None:intergenic | 40.0% | |
| GATCCATGGAGGTAATCTTA+TGG | + | chr3.3:84757273-84757292 | MS.gene38670:intron | 40.0% | |
| GGAGAAATACAAGCAGTACA+AGG | + | chr3.3:84758795-84758814 | MS.gene38670:CDS | 40.0% | |
| GTTTGGGTGCCTTAATAGTT+TGG | + | chr3.3:84757861-84757880 | MS.gene38670:intron | 40.0% | |
| TAACTATCTTCGATCCATGG+AGG | + | chr3.3:84757262-84757281 | MS.gene38670:CDS | 40.0% | |
| TAGGGTCAAGCTTCAATTGT+TGG | + | chr3.3:84757559-84757578 | MS.gene38670:CDS | 40.0% | |
| TGAAGCTTGACCCTATTGAT+AGG | - | chr3.3:84757554-84757573 | None:intergenic | 40.0% | |
| TGTAGTTTCTGTGATACAGG+AGG | + | chr3.3:84758258-84758277 | MS.gene38670:intron | 40.0% | |
| TGTATATGTCAAGACGGGAA+GGG | + | chr3.3:84758755-84758774 | MS.gene38670:CDS | 40.0% | |
| TGTGAGATTCTTGCCTTCTT+TGG | + | chr3.3:84758481-84758500 | MS.gene38670:CDS | 40.0% | |
| ! | AAGGGTCATTTGAAGCTACT+CGG | + | chr3.3:84758773-84758792 | MS.gene38670:CDS | 40.0% |
| ! | ATACCCAGAGTATTCTTGCA+GGG | - | chr3.3:84758692-84758711 | None:intergenic | 40.0% |
| ! | TATACCCAGAGTATTCTTGC+AGG | - | chr3.3:84758693-84758712 | None:intergenic | 40.0% |
| !! | CTGGAGCATCAAAGTTTTCA+TGG | - | chr3.3:84757226-84757245 | None:intergenic | 40.0% |
| !! | GACATTTCGAAAGCGTTGTT+AGG | + | chr3.3:84758347-84758366 | MS.gene38670:intron | 40.0% |
| !!! | CATGTGATTTTGGGTTTCGT+TGG | - | chr3.3:84757105-84757124 | None:intergenic | 40.0% |
| ACGCATTCCTTCAACTCAAC+TGG | - | chr3.3:84758718-84758737 | None:intergenic | 45.0% | |
| CATAATTCTTCGACATGGGG+TGG | - | chr3.3:84757727-84757746 | None:intergenic | 45.0% | |
| CTGTATATGTCAAGACGGGA+AGG | + | chr3.3:84758754-84758773 | MS.gene38670:CDS | 45.0% | |
| GACCCATAAGATTACCTCCA+TGG | - | chr3.3:84757279-84757298 | None:intergenic | 45.0% | |
| GAGATTCTTGCCTTCTTTGG+TGG | + | chr3.3:84758484-84758503 | MS.gene38670:CDS | 45.0% | |
| GGCTTACGATGCAATGTACA+TGG | - | chr3.3:84757594-84757613 | None:intergenic | 45.0% | |
| TGGTCTCAGTAGTTGCGTTT+GGG | + | chr3.3:84757973-84757992 | MS.gene38670:intron | 45.0% | |
| TTGGCCCAAAACTTATCCCT+GGG | + | chr3.3:84758541-84758560 | MS.gene38670:CDS | 45.0% | |
| TTGGTAAATGAGGAGGCGAA+GGG | - | chr3.3:84758915-84758934 | None:intergenic | 45.0% | |
| TTGGTCTCAGTAGTTGCGTT+TGG | + | chr3.3:84757972-84757991 | MS.gene38670:intron | 45.0% | |
| TTTGGCCCAAAACTTATCCC+TGG | + | chr3.3:84758540-84758559 | MS.gene38670:CDS | 45.0% | |
| ! | ACTTGCCCAGGGATAAGTTT+TGG | - | chr3.3:84758549-84758568 | None:intergenic | 45.0% |
| ! | AGGGTCATTTGAAGCTACTC+GGG | + | chr3.3:84758774-84758793 | MS.gene38670:CDS | 45.0% |
| ! | CTTGCCCAGGGATAAGTTTT+GGG | - | chr3.3:84758548-84758567 | None:intergenic | 45.0% |
| CAGCCCTGCAAGAATACTCT+GGG | + | chr3.3:84758686-84758705 | MS.gene38670:CDS | 50.0% | |
| CTTGGTAAATGAGGAGGCGA+AGG | - | chr3.3:84758916-84758935 | None:intergenic | 50.0% | |
| GGTCTCAGTAGTTGCGTTTG+GGG | + | chr3.3:84757974-84757993 | MS.gene38670:intron | 50.0% | |
| GGTGCCTTAATAGTTTGGGC+AGG | + | chr3.3:84757866-84757885 | MS.gene38670:intron | 50.0% | |
| TCAGCCCTGCAAGAATACTC+TGG | + | chr3.3:84758685-84758704 | MS.gene38670:CDS | 50.0% | |
| TTGAGACTCGCTCTGCAAAG+AGG | + | chr3.3:84757075-84757094 | MS.gene38670:CDS | 50.0% | |
| ATCGACGCAGCCACCAAAGA+AGG | - | chr3.3:84758497-84758516 | None:intergenic | 55.0% | |
| GTAAATGAGGAGGCGAAGGG+AGG | - | chr3.3:84758912-84758931 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84757071 | 84758948 | 84757071 | ID=MS.gene38670 |
| chr3.3 | mRNA | 84757071 | 84758948 | 84757071 | ID=MS.gene38670.t1;Parent=MS.gene38670 |
| chr3.3 | exon | 84757071 | 84757283 | 84757071 | ID=MS.gene38670.t1.exon1;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84757071 | 84757283 | 84757071 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84757374 | 84757606 | 84757374 | ID=MS.gene38670.t1.exon2;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84757374 | 84757606 | 84757374 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84757705 | 84757780 | 84757705 | ID=MS.gene38670.t1.exon3;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84757705 | 84757780 | 84757705 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84758091 | 84758167 | 84758091 | ID=MS.gene38670.t1.exon4;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84758091 | 84758167 | 84758091 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84758277 | 84758310 | 84758277 | ID=MS.gene38670.t1.exon5;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84758277 | 84758310 | 84758277 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84758413 | 84758562 | 84758413 | ID=MS.gene38670.t1.exon6;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84758413 | 84758562 | 84758413 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84758682 | 84758816 | 84758682 | ID=MS.gene38670.t1.exon7;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84758682 | 84758816 | 84758682 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| chr3.3 | exon | 84758892 | 84758948 | 84758892 | ID=MS.gene38670.t1.exon8;Parent=MS.gene38670.t1 |
| chr3.3 | CDS | 84758892 | 84758948 | 84758892 | ID=cds.MS.gene38670.t1;Parent=MS.gene38670.t1 |
| Gene Sequence |
| Protein sequence |
