Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38685.t1 | XP_004506876.1 | 55.6 | 151 | 28 | 2 | 103 | 215 | 83 | 232 | 7.00E-30 | 141 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38685.t1 | Q8H151 | 81.1 | 53 | 10 | 0 | 124 | 176 | 124 | 176 | 3.8e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38685.t1 | A0A1S2YM65 | 55.6 | 151 | 28 | 2 | 103 | 215 | 83 | 232 | 5.1e-30 | 141.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055864 | MS.gene38685 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene38685 | 0.826613 | 2.46E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38685.t1 | MTR_4g011790 | 62.500 | 128 | 10 | 1 | 126 | 215 | 111 | 238 | 1.14e-39 | 144 |
| MS.gene38685.t1 | MTR_4g011790 | 62.500 | 128 | 10 | 1 | 126 | 215 | 111 | 238 | 1.32e-39 | 144 |
| MS.gene38685.t1 | MTR_4g011790 | 62.500 | 128 | 10 | 1 | 126 | 215 | 111 | 238 | 1.90e-39 | 143 |
| MS.gene38685.t1 | MTR_4g013210 | 50.993 | 151 | 36 | 1 | 103 | 215 | 83 | 233 | 3.26e-35 | 130 |
| MS.gene38685.t1 | MTR_4g013210 | 50.993 | 151 | 36 | 1 | 103 | 215 | 83 | 233 | 5.36e-35 | 130 |
| MS.gene38685.t1 | MTR_4g013210 | 50.993 | 151 | 36 | 1 | 103 | 215 | 83 | 233 | 8.13e-35 | 130 |
| MS.gene38685.t1 | MTR_4g013210 | 50.993 | 151 | 36 | 1 | 103 | 215 | 83 | 233 | 1.36e-34 | 129 |
| MS.gene38685.t1 | MTR_2g013350 | 45.985 | 137 | 56 | 5 | 63 | 197 | 85 | 205 | 9.29e-25 | 102 |
| MS.gene38685.t1 | MTR_2g013350 | 45.985 | 137 | 56 | 5 | 63 | 197 | 140 | 260 | 9.41e-25 | 102 |
| MS.gene38685.t1 | MTR_2g013350 | 45.985 | 137 | 56 | 5 | 63 | 197 | 63 | 183 | 1.15e-24 | 101 |
| MS.gene38685.t1 | MTR_4g089085 | 82.692 | 52 | 9 | 0 | 63 | 114 | 151 | 202 | 1.84e-23 | 98.6 |
| MS.gene38685.t1 | MTR_2g104475 | 87.879 | 33 | 4 | 0 | 56 | 88 | 68 | 100 | 1.85e-12 | 62.4 |
| MS.gene38685.t1 | MTR_7g111940 | 73.333 | 45 | 8 | 1 | 57 | 101 | 13 | 53 | 1.18e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38685.t1 | AT4G21660 | 64.935 | 77 | 19 | 2 | 63 | 139 | 156 | 224 | 1.52e-23 | 98.6 |
| MS.gene38685.t1 | AT4G21660 | 84.615 | 52 | 8 | 0 | 63 | 114 | 156 | 207 | 1.88e-23 | 98.6 |
| MS.gene38685.t1 | AT4G21660 | 66.667 | 69 | 23 | 0 | 63 | 131 | 156 | 224 | 3.09e-23 | 97.8 |
| MS.gene38685.t1 | AT3G16170 | 46.154 | 130 | 25 | 3 | 124 | 215 | 124 | 246 | 3.35e-21 | 92.0 |
Find 46 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATGTCAATGAGTTATT+TGG | 0.185955 | 3.3:+84628585 | MS.gene38685:CDS |
| AGAATTGGACATTCACAAAA+TGG | 0.255854 | 3.3:+84630413 | MS.gene38685:CDS |
| TTCTTGCAGGGGAGCGGCTT+TGG | 0.257739 | 3.3:+84629385 | MS.gene38685:intron |
| TCCTCTTAGAAGAGTAGAAT+TGG | 0.345365 | 3.3:+84630398 | MS.gene38685:intron |
| TCAAATGTACCGTCGAATTC+AGG | 0.346423 | 3.3:+84628422 | MS.gene38685:CDS |
| CCGTCTGCTGAATTTGTTGC+TGG | 0.348843 | 3.3:+84629936 | MS.gene38685:CDS |
| TTTGAGGACACTGCTGCTTC+AGG | 0.350191 | 3.3:+84628627 | MS.gene38685:CDS |
| CTTCCAACAATTGCAGGTTA+TGG | 0.369594 | 3.3:-84628726 | None:intergenic |
| ATGATGTCAATGAGTTATTT+GGG | 0.370649 | 3.3:+84628586 | MS.gene38685:CDS |
| CGACGGTACATTTGAATCTT+CGG | 0.385027 | 3.3:-84628414 | None:intergenic |
| TGCAGCAGATCCTAAGTTGC+TGG | 0.399151 | 3.3:+84629150 | MS.gene38685:CDS |
| TCATACCTTCCAACAATTGC+AGG | 0.410987 | 3.3:-84628732 | None:intergenic |
| GAATTGGACATTCACAAAAT+GGG | 0.421927 | 3.3:+84630414 | MS.gene38685:CDS |
| CTTTGGATTAGGTGAAGATT+CGG | 0.431233 | 3.3:+84630583 | MS.gene38685:intron |
| ATTGAAATCCAGGGAAATCT+TGG | 0.431539 | 3.3:+84629885 | MS.gene38685:intron |
| AATGCAACATGTGGGAATAT+TGG | 0.431829 | 3.3:+84630871 | MS.gene38685:CDS |
| ATACTCGCGACTTGGTTTAG+TGG | 0.453344 | 3.3:+84629960 | MS.gene38685:CDS |
| TCTCTATGTGATGAAGAATT+CGG | 0.459964 | 3.3:+84630028 | MS.gene38685:CDS |
| TTGTACACTAGCGGGACAAC+AGG | 0.468065 | 3.3:+84630614 | MS.gene38685:CDS |
| GCTTTGGCAATCACCAATCC+TGG | 0.472204 | 3.3:+84629401 | MS.gene38685:CDS |
| TAGCCATAACCTGCAATTGT+TGG | 0.488861 | 3.3:+84628723 | MS.gene38685:intron |
| AATCTTGGTGGAGCTCGAAT+AGG | 0.490823 | 3.3:+84629900 | MS.gene38685:CDS |
| TTGCTGGAATACTCGCGACT+TGG | 0.497836 | 3.3:+84629952 | MS.gene38685:CDS |
| TTCCAAACACCTACCAGTCC+AGG | 0.501998 | 3.3:-84629419 | None:intergenic |
| ATGTGGTTCTTGCAGGGGAG+CGG | 0.504014 | 3.3:+84629379 | MS.gene38685:intron |
| ACTCCTACCACAACAACATC+AGG | 0.506236 | 3.3:-84629023 | None:intergenic |
| TGATGTTGATAATGAATTTG+AGG | 0.521778 | 3.3:+84628611 | MS.gene38685:CDS |
| TACCCTTAGGGATGGATGGA+TGG | 0.529376 | 3.3:+84628369 | None:intergenic |
| TGTGACCAATGCCTAGGTGC+AGG | 0.530298 | 3.3:-84629202 | None:intergenic |
| AACACCTACCAGTCCAGGAT+TGG | 0.539428 | 3.3:-84629414 | None:intergenic |
| CCAATGCCTAGGTGCAGGTA+CGG | 0.548490 | 3.3:-84629197 | None:intergenic |
| GACATACCCTTAGGGATGGA+TGG | 0.550867 | 3.3:+84628365 | None:intergenic |
| GGCAATCACCAATCCTGGAC+TGG | 0.554841 | 3.3:+84629406 | MS.gene38685:CDS |
| TCTGCATAGCTGAGTGCAAG+TGG | 0.559278 | 3.3:-84629996 | None:intergenic |
| CCAGCAACAAATTCAGCAGA+CGG | 0.563226 | 3.3:-84629936 | None:intergenic |
| TCTCTATTATTACAGTTGGA+GGG | 0.566642 | 3.3:+84630842 | MS.gene38685:intron |
| GAAATCCAGGGAAATCTTGG+TGG | 0.568219 | 3.3:+84629888 | MS.gene38685:intron |
| CTCAAGACCTGATGTTGTTG+TGG | 0.574621 | 3.3:+84629016 | MS.gene38685:CDS |
| CCGTACCTGCACCTAGGCAT+TGG | 0.578210 | 3.3:+84629197 | MS.gene38685:CDS |
| CATAACCTGCAATTGTTGGA+AGG | 0.584273 | 3.3:+84628727 | MS.gene38685:CDS |
| GGGCTTCTTAATGCAACATG+TGG | 0.594840 | 3.3:+84630862 | MS.gene38685:CDS |
| AATTGGACATTCACAAAATG+GGG | 0.610443 | 3.3:+84630415 | MS.gene38685:CDS |
| CTCGCGACTTGGTTTAGTGG+AGG | 0.621339 | 3.3:+84629963 | MS.gene38685:CDS |
| GGCTTCTTAATGCAACATGT+GGG | 0.624011 | 3.3:+84630863 | MS.gene38685:CDS |
| GTAACACCGTACCTGCACCT+AGG | 0.692657 | 3.3:+84629191 | MS.gene38685:CDS |
| TGATGTCAATGAGTTATTTG+GGG | 0.714769 | 3.3:+84628587 | MS.gene38685:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAATTTCATATAAA+AGG | - | chr3.3:84630176-84630195 | None:intergenic | 10.0% |
| !!! | TAGTAATATCATTTTCAAAT+TGG | + | chr3.3:84628827-84628846 | MS.gene38685:intron | 15.0% |
| !! | AGGTTTATCTTATATATGTA+TGG | + | chr3.3:84629356-84629375 | MS.gene38685:intron | 20.0% |
| !! | ATCAATCTGCTAAAAATTTA+AGG | + | chr3.3:84629759-84629778 | MS.gene38685:intron | 20.0% |
| !!! | AATATCATTTTCAAATTGGT+TGG | + | chr3.3:84628831-84628850 | MS.gene38685:intron | 20.0% |
| !!! | ACATTTTCAGCTTTTAAAAA+TGG | + | chr3.3:84630494-84630513 | MS.gene38685:intron | 20.0% |
| !!! | AGAATTAGTTTCAAATTGTT+GGG | + | chr3.3:84629058-84629077 | MS.gene38685:intron | 20.0% |
| !!! | ATAATTTCATTTTCAGGTTT+GGG | + | chr3.3:84629120-84629139 | MS.gene38685:intron | 20.0% |
| !!! | ATATGAAATTTTCAAATAGC+TGG | + | chr3.3:84630179-84630198 | MS.gene38685:intron | 20.0% |
| !!! | ATTATCTTTGTTATATTGAG+TGG | + | chr3.3:84629470-84629489 | MS.gene38685:intron | 20.0% |
| !!! | TGTTTCATAATTTCATTTTC+AGG | + | chr3.3:84629114-84629133 | MS.gene38685:intron | 20.0% |
| !!! | TTATCTTTGTTATATTGAGT+GGG | + | chr3.3:84629471-84629490 | MS.gene38685:intron | 20.0% |
| !!! | TTGAAGTTTAAAATGCTTTT+CGG | + | chr3.3:84628666-84628685 | MS.gene38685:intron | 20.0% |
| !!! | TTTGTTTGGTGTTTTTATTT+TGG | + | chr3.3:84629596-84629615 | MS.gene38685:intron | 20.0% |
| ! | AATAAAAGAGAAACAACTCA+AGG | - | chr3.3:84629453-84629472 | None:intergenic | 25.0% |
| ! | AATGATGTCAATGAGTTATT+TGG | + | chr3.3:84628585-84628604 | MS.gene38685:CDS | 25.0% |
| ! | ACATTAAACAGACAAAAGAA+AGG | - | chr3.3:84630092-84630111 | None:intergenic | 25.0% |
| ! | ATCTTATATATGTATGGATG+TGG | + | chr3.3:84629362-84629381 | MS.gene38685:intron | 25.0% |
| ! | ATGAAACATCATTTGCATAA+CGG | - | chr3.3:84629102-84629121 | None:intergenic | 25.0% |
| ! | ATGATGTCAATGAGTTATTT+GGG | + | chr3.3:84628586-84628605 | MS.gene38685:CDS | 25.0% |
| ! | ATTACTACTTCTGATAAAAG+TGG | - | chr3.3:84628814-84628833 | None:intergenic | 25.0% |
| ! | ATTGAATACTTAGTCTATGA+TGG | + | chr3.3:84629785-84629804 | MS.gene38685:intron | 25.0% |
| ! | CCTATAATAACTATCAAGTT+AGG | - | chr3.3:84629259-84629278 | None:intergenic | 25.0% |
| ! | GTATTCTCTATTATTACAGT+TGG | + | chr3.3:84630838-84630857 | MS.gene38685:intron | 25.0% |
| ! | TCATTAGTGAACACTATAAT+TGG | + | chr3.3:84628499-84628518 | MS.gene38685:intron | 25.0% |
| ! | TCGTTTAGTCAAATTATGTA+TGG | + | chr3.3:84629861-84629880 | MS.gene38685:intron | 25.0% |
| ! | TGAAATTGATGAAGTCAATA+AGG | + | chr3.3:84629336-84629355 | MS.gene38685:intron | 25.0% |
| ! | TTCAAAATGAAACTTACCTA+AGG | + | chr3.3:84630255-84630274 | MS.gene38685:intron | 25.0% |
| ! | TTGAATACTTAGTCTATGAT+GGG | + | chr3.3:84629786-84629805 | MS.gene38685:intron | 25.0% |
| !! | ATCATATATACTTTTCACGA+AGG | - | chr3.3:84630225-84630244 | None:intergenic | 25.0% |
| !! | ATTTTCCATTGACATTATCT+TGG | + | chr3.3:84630148-84630167 | MS.gene38685:intron | 25.0% |
| !! | CAGAATTAGTTTCAAATTGT+TGG | + | chr3.3:84629057-84629076 | MS.gene38685:intron | 25.0% |
| !! | CCTAACTTGATAGTTATTAT+AGG | + | chr3.3:84629256-84629275 | MS.gene38685:intron | 25.0% |
| !! | GAACAATTTTATATACGTGT+AGG | - | chr3.3:84630715-84630734 | None:intergenic | 25.0% |
| !! | TAGCAATTTTTCTCTGAATT+TGG | + | chr3.3:84629667-84629686 | MS.gene38685:intron | 25.0% |
| !! | TCAGCTTTTATATATAACGA+TGG | - | chr3.3:84628479-84628498 | None:intergenic | 25.0% |
| !! | TTTTTCATATCCTTTGGATT+AGG | + | chr3.3:84630572-84630591 | MS.gene38685:intron | 25.0% |
| !!! | ACAAAAGAGAAATTTTTTGC+AGG | + | chr3.3:84629222-84629241 | MS.gene38685:intron | 25.0% |
| !!! | CATAATTTCATTTTCAGGTT+TGG | + | chr3.3:84629119-84629138 | MS.gene38685:intron | 25.0% |
| !!! | CATTTGTTTTTCATATCCTT+TGG | + | chr3.3:84630566-84630585 | MS.gene38685:intron | 25.0% |
| !!! | TAATGCACAAGATATTTTTG+TGG | + | chr3.3:84629631-84629650 | MS.gene38685:intron | 25.0% |
| !!! | TGATGTTGATAATGAATTTG+AGG | + | chr3.3:84628611-84628630 | MS.gene38685:CDS | 25.0% |
| AAAAACATACCTGAATTCGA+CGG | - | chr3.3:84628434-84628453 | None:intergenic | 30.0% | |
| AATATGGAAAAACTGAGAAG+AGG | - | chr3.3:84630360-84630379 | None:intergenic | 30.0% | |
| AATGATGTAAACATGTCTGA+TGG | + | chr3.3:84629281-84629300 | MS.gene38685:intron | 30.0% | |
| AATTGGACATTCACAAAATG+GGG | + | chr3.3:84630415-84630434 | MS.gene38685:CDS | 30.0% | |
| AGAATTGGACATTCACAAAA+TGG | + | chr3.3:84630413-84630432 | MS.gene38685:CDS | 30.0% | |
| AGGAAAGCAGTTATCAAAAA+AGG | - | chr3.3:84629546-84629565 | None:intergenic | 30.0% | |
| ATTGAGGAGAATAAAAGTTG+AGG | + | chr3.3:84629723-84629742 | MS.gene38685:intron | 30.0% | |
| CAGAGAAAAATTGCTATATC+TGG | - | chr3.3:84629663-84629682 | None:intergenic | 30.0% | |
| CTTGTGAACATTAAGAATTC+AGG | + | chr3.3:84630116-84630135 | MS.gene38685:intron | 30.0% | |
| GAATTGGACATTCACAAAAT+GGG | + | chr3.3:84630414-84630433 | MS.gene38685:CDS | 30.0% | |
| TAAGAGGAATTATTAGGAAC+AGG | - | chr3.3:84630386-84630405 | None:intergenic | 30.0% | |
| TACCTAAGGAAGAAAAAAGT+TGG | + | chr3.3:84630269-84630288 | MS.gene38685:intron | 30.0% | |
| TCTCTATGTGATGAAGAATT+CGG | + | chr3.3:84630028-84630047 | MS.gene38685:CDS | 30.0% | |
| TCTCTATTATTACAGTTGGA+GGG | + | chr3.3:84630842-84630861 | MS.gene38685:intron | 30.0% | |
| TGATGTCAATGAGTTATTTG+GGG | + | chr3.3:84628587-84628606 | MS.gene38685:CDS | 30.0% | |
| TGTGTCTTGAATTTATGTTG+TGG | + | chr3.3:84629519-84629538 | MS.gene38685:intron | 30.0% | |
| TGTTATATTGAGTGGGAATA+TGG | + | chr3.3:84629478-84629497 | MS.gene38685:intron | 30.0% | |
| TTCTCTATTATTACAGTTGG+AGG | + | chr3.3:84630841-84630860 | MS.gene38685:intron | 30.0% | |
| ! | CTCTTCTAAGAGGAATTATT+AGG | - | chr3.3:84630392-84630411 | None:intergenic | 30.0% |
| ! | GAATTTGGTTCATTTAACTG+AGG | + | chr3.3:84629682-84629701 | MS.gene38685:intron | 30.0% |
| ! | TTGATCTTTCGACATTTTTC+AGG | - | chr3.3:84630463-84630482 | None:intergenic | 30.0% |
| !! | AAACTGAGAAGAGGTTTTAT+TGG | - | chr3.3:84630351-84630370 | None:intergenic | 30.0% |
| !! | ATATTGAGTACTGAAGATCA+TGG | + | chr3.3:84630305-84630324 | MS.gene38685:intron | 30.0% |
| !! | TTGATAACTGCTTTCCTTTT+TGG | + | chr3.3:84629549-84629568 | MS.gene38685:intron | 30.0% |
| !!! | CAGGTATGTTTTTAGTCTAT+AGG | + | chr3.3:84628441-84628460 | MS.gene38685:intron | 30.0% |
| !!! | TTCATTGCATCTTTTTTTGC+AGG | + | chr3.3:84628926-84628945 | MS.gene38685:intron | 30.0% |
| AAAATTGCTATATCTGGCCA+AGG | - | chr3.3:84629657-84629676 | None:intergenic | 35.0% | |
| AATGCAACATGTGGGAATAT+TGG | + | chr3.3:84630871-84630890 | MS.gene38685:CDS | 35.0% | |
| AGACAAATTGTCTTCTTCAC+TGG | + | chr3.3:84630688-84630707 | MS.gene38685:intron | 35.0% | |
| AGGTACCAAGATAATGTCAA+TGG | - | chr3.3:84630156-84630175 | None:intergenic | 35.0% | |
| AGTCGAAACACAATGTATTG+AGG | + | chr3.3:84629707-84629726 | MS.gene38685:intron | 35.0% | |
| ATGATGAGAAAGAATTGCCT+TGG | - | chr3.3:84630549-84630568 | None:intergenic | 35.0% | |
| ATTGAAATCCAGGGAAATCT+TGG | + | chr3.3:84629885-84629904 | MS.gene38685:intron | 35.0% | |
| ATTGCCTTGGAAAACTGATA+CGG | - | chr3.3:84630536-84630555 | None:intergenic | 35.0% | |
| CAAGAAACCTCATTCCAAAA+AGG | - | chr3.3:84629566-84629585 | None:intergenic | 35.0% | |
| TAATGATGCTAGCAACTCTA+TGG | + | chr3.3:84628689-84628708 | MS.gene38685:intron | 35.0% | |
| TATTAGGAACAGGCAGAATA+TGG | - | chr3.3:84630376-84630395 | None:intergenic | 35.0% | |
| TCCAATTCTACTCTTCTAAG+AGG | - | chr3.3:84630402-84630421 | None:intergenic | 35.0% | |
| TCCTCTTAGAAGAGTAGAAT+TGG | + | chr3.3:84630398-84630417 | MS.gene38685:intron | 35.0% | |
| TTCAAAAACACCAGCAACTT+AGG | - | chr3.3:84629163-84629182 | None:intergenic | 35.0% | |
| ! | ATGTATGGCATTGAAATCCA+GGG | + | chr3.3:84629876-84629895 | MS.gene38685:intron | 35.0% |
| ! | CGTTGTCTAATTTTGCGAAT+TGG | - | chr3.3:84628963-84628982 | None:intergenic | 35.0% |
| ! | CTTTGGATTAGGTGAAGATT+CGG | + | chr3.3:84630583-84630602 | MS.gene38685:intron | 35.0% |
| ! | TATGTATGGCATTGAAATCC+AGG | + | chr3.3:84629875-84629894 | MS.gene38685:intron | 35.0% |
| !! | ACAAGATATTTTTGTGGCCT+TGG | + | chr3.3:84629637-84629656 | MS.gene38685:intron | 35.0% |
| !!! | CACCAACTTTTTTCTTCCTT+AGG | - | chr3.3:84630274-84630293 | None:intergenic | 35.0% |
| !!! | CTTTTTGGAATGAGGTTTCT+TGG | + | chr3.3:84629564-84629583 | MS.gene38685:intron | 35.0% |
| !!! | GGTGTTTTTATTTTGGAGTG+AGG | + | chr3.3:84629603-84629622 | MS.gene38685:intron | 35.0% |
| !!! | TTTTTTAGGCGTCGAAATTG+AGG | + | chr3.3:84628560-84628579 | MS.gene38685:intron | 35.0% |
| ACTGGTAGGTGTTTGGAAAT+GGG | + | chr3.3:84629424-84629443 | MS.gene38685:intron | 40.0% | |
| CATAACCTGCAATTGTTGGA+AGG | + | chr3.3:84628727-84628746 | MS.gene38685:CDS | 40.0% | |
| CGAATCTTCACCTAATCCAA+AGG | - | chr3.3:84630585-84630604 | None:intergenic | 40.0% | |
| CGACGGTACATTTGAATCTT+CGG | - | chr3.3:84628417-84628436 | None:intergenic | 40.0% | |
| CTTCCAACAATTGCAGGTTA+TGG | - | chr3.3:84628729-84628748 | None:intergenic | 40.0% | |
| GGCTTCTTAATGCAACATGT+GGG | + | chr3.3:84630863-84630882 | MS.gene38685:CDS | 40.0% | |
| TAGCAACTCTATGGAGTCAT+TGG | + | chr3.3:84628698-84628717 | MS.gene38685:intron | 40.0% | |
| TAGCCATAACCTGCAATTGT+TGG | + | chr3.3:84628723-84628742 | MS.gene38685:intron | 40.0% | |
| TCAAATGTACCGTCGAATTC+AGG | + | chr3.3:84628422-84628441 | MS.gene38685:CDS | 40.0% | |
| TCATACCTTCCAACAATTGC+AGG | - | chr3.3:84628735-84628754 | None:intergenic | 40.0% | |
| ! | ATCTCCGTATCAGTTTTCCA+AGG | + | chr3.3:84630529-84630548 | MS.gene38685:intron | 40.0% |
| ! | CTTGGTGCACAAGATTTGTT+TGG | + | chr3.3:84629582-84629601 | MS.gene38685:intron | 40.0% |
| ! | GCAATTGTTGGAAGGTATGA+TGG | + | chr3.3:84628735-84628754 | MS.gene38685:intron | 40.0% |
| !!! | CACTGATTTTGTACACTAGC+GGG | + | chr3.3:84630606-84630625 | MS.gene38685:CDS | 40.0% |
| !!! | CTGCTTTCCTTTTTGGAATG+AGG | + | chr3.3:84629556-84629575 | MS.gene38685:intron | 40.0% |
| !!! | GCACTGATTTTGTACACTAG+CGG | + | chr3.3:84630605-84630624 | MS.gene38685:CDS | 40.0% |
| AATCTTGGTGGAGCTCGAAT+AGG | + | chr3.3:84629900-84629919 | MS.gene38685:CDS | 45.0% | |
| ACTCCTACCACAACAACATC+AGG | - | chr3.3:84629026-84629045 | None:intergenic | 45.0% | |
| AGACCTGATGTTGTTGTGGT+AGG | + | chr3.3:84629020-84629039 | MS.gene38685:intron | 45.0% | |
| ATTAGTACATCACGCACGCA+AGG | - | chr3.3:84629312-84629331 | None:intergenic | 45.0% | |
| CATAACGGCCTCAAAAGAAG+CGG | - | chr3.3:84629087-84629106 | None:intergenic | 45.0% | |
| CCAGCAACAAATTCAGCAGA+CGG | - | chr3.3:84629939-84629958 | None:intergenic | 45.0% | |
| CTCAAGACCTGATGTTGTTG+TGG | + | chr3.3:84629016-84629035 | MS.gene38685:CDS | 45.0% | |
| GAAATCCAGGGAAATCTTGG+TGG | + | chr3.3:84629888-84629907 | MS.gene38685:intron | 45.0% | |
| GACTGGTAGGTGTTTGGAAA+TGG | + | chr3.3:84629423-84629442 | MS.gene38685:intron | 45.0% | |
| GGGCTTCTTAATGCAACATG+TGG | + | chr3.3:84630862-84630881 | MS.gene38685:CDS | 45.0% | |
| GTATGGATGTGGTTCTTGCA+GGG | + | chr3.3:84629373-84629392 | MS.gene38685:intron | 45.0% | |
| TATGGATGTGGTTCTTGCAG+GGG | + | chr3.3:84629374-84629393 | MS.gene38685:intron | 45.0% | |
| TGCGTGCGTGATGTACTAAT+GGG | + | chr3.3:84629312-84629331 | MS.gene38685:intron | 45.0% | |
| TGTATGGATGTGGTTCTTGC+AGG | + | chr3.3:84629372-84629391 | MS.gene38685:intron | 45.0% | |
| TTGCGTGCGTGATGTACTAA+TGG | + | chr3.3:84629311-84629330 | MS.gene38685:intron | 45.0% | |
| ! | CTCTTTTGTGACCAATGCCT+AGG | - | chr3.3:84629211-84629230 | None:intergenic | 45.0% |
| ! | TTGGGTATCCGCTTCTTTTG+AGG | + | chr3.3:84629076-84629095 | MS.gene38685:intron | 45.0% |
| !! | ATACTCGCGACTTGGTTTAG+TGG | + | chr3.3:84629960-84629979 | MS.gene38685:CDS | 45.0% |
| !!! | TAATTAGATATTATTTTTTT+AGG | + | chr3.3:84628546-84628565 | MS.gene38685:intron | 5.0% |
| AACACCTACCAGTCCAGGAT+TGG | - | chr3.3:84629417-84629436 | None:intergenic | 50.0% | |
| GCGTGCGTGATGTACTAATG+GGG | + | chr3.3:84629313-84629332 | MS.gene38685:intron | 50.0% | |
| GCTTTGGCAATCACCAATCC+TGG | + | chr3.3:84629401-84629420 | MS.gene38685:CDS | 50.0% | |
| TCTGCATAGCTGAGTGCAAG+TGG | - | chr3.3:84629999-84630018 | None:intergenic | 50.0% | |
| TGCAGCAGATCCTAAGTTGC+TGG | + | chr3.3:84629150-84629169 | MS.gene38685:CDS | 50.0% | |
| TTCCAAACACCTACCAGTCC+AGG | - | chr3.3:84629422-84629441 | None:intergenic | 50.0% | |
| TTGCTGGAATACTCGCGACT+TGG | + | chr3.3:84629952-84629971 | MS.gene38685:CDS | 50.0% | |
| TTGTACACTAGCGGGACAAC+AGG | + | chr3.3:84630614-84630633 | MS.gene38685:CDS | 50.0% | |
| ! | TTTGAGGACACTGCTGCTTC+AGG | + | chr3.3:84628627-84628646 | MS.gene38685:CDS | 50.0% |
| !! | ATCACCAATCCTGGACTGGT+AGG | + | chr3.3:84629410-84629429 | MS.gene38685:intron | 50.0% |
| !! | ATCCTGGACTGGTAGGTGTT+TGG | + | chr3.3:84629417-84629436 | MS.gene38685:intron | 50.0% |
| !! | CCGTCTGCTGAATTTGTTGC+TGG | + | chr3.3:84629936-84629955 | MS.gene38685:CDS | 50.0% |
| ATGTGGTTCTTGCAGGGGAG+CGG | + | chr3.3:84629379-84629398 | MS.gene38685:intron | 55.0% | |
| CCAATGCCTAGGTGCAGGTA+CGG | - | chr3.3:84629200-84629219 | None:intergenic | 55.0% | |
| GAGCTCCACCAAGATTTCCC+TGG | - | chr3.3:84629896-84629915 | None:intergenic | 55.0% | |
| GGCAATCACCAATCCTGGAC+TGG | + | chr3.3:84629406-84629425 | MS.gene38685:CDS | 55.0% | |
| GTAACACCGTACCTGCACCT+AGG | + | chr3.3:84629191-84629210 | MS.gene38685:CDS | 55.0% | |
| TGTGACCAATGCCTAGGTGC+AGG | - | chr3.3:84629205-84629224 | None:intergenic | 55.0% | |
| !! | CTCGCGACTTGGTTTAGTGG+AGG | + | chr3.3:84629963-84629982 | MS.gene38685:CDS | 55.0% |
| CCGTACCTGCACCTAGGCAT+TGG | + | chr3.3:84629197-84629216 | MS.gene38685:CDS | 60.0% | |
| TTCTTGCAGGGGAGCGGCTT+TGG | + | chr3.3:84629385-84629404 | MS.gene38685:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84628380 | 84630900 | 84628380 | ID=MS.gene38685 |
| chr3.3 | mRNA | 84628380 | 84630900 | 84628380 | ID=MS.gene38685.t1;Parent=MS.gene38685 |
| chr3.3 | exon | 84628380 | 84628443 | 84628380 | ID=MS.gene38685.t1.exon1;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84628380 | 84628443 | 84628380 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84628568 | 84628648 | 84628568 | ID=MS.gene38685.t1.exon2;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84628568 | 84628648 | 84628568 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84628726 | 84628748 | 84628726 | ID=MS.gene38685.t1.exon3;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84628726 | 84628748 | 84628726 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84628948 | 84629037 | 84628948 | ID=MS.gene38685.t1.exon4;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84628948 | 84629037 | 84628948 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84629136 | 84629218 | 84629136 | ID=MS.gene38685.t1.exon5;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84629136 | 84629218 | 84629136 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84629394 | 84629427 | 84629394 | ID=MS.gene38685.t1.exon6;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84629394 | 84629427 | 84629394 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84629897 | 84630049 | 84629897 | ID=MS.gene38685.t1.exon7;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84629897 | 84630049 | 84629897 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84630407 | 84630482 | 84630407 | ID=MS.gene38685.t1.exon8;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84630407 | 84630482 | 84630407 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84630594 | 84630635 | 84630594 | ID=MS.gene38685.t1.exon9;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84630594 | 84630635 | 84630594 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| chr3.3 | exon | 84630857 | 84630900 | 84630857 | ID=MS.gene38685.t1.exon10;Parent=MS.gene38685.t1 |
| chr3.3 | CDS | 84630857 | 84630900 | 84630857 | ID=cds.MS.gene38685.t1;Parent=MS.gene38685.t1 |
| Gene Sequence |
| Protein sequence |
