AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055864


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055864.t1 MTR_8g056030 97.923 674 14 0 1 674 58 731 0.0 1374
MS.gene055864.t1 MTR_5g039880 81.454 674 125 0 1 674 59 732 0.0 1157
MS.gene055864.t1 MTR_7g039690 77.893 674 125 1 1 674 59 708 0.0 1093
MS.gene055864.t1 MTR_7g039660 77.893 674 138 2 1 674 58 720 0.0 1089
MS.gene055864.t1 MTR_6g011700 74.926 674 145 1 1 674 56 705 0.0 1037
MS.gene055864.t1 MTR_6g011770 71.810 674 166 1 1 674 56 705 0.0 989
MS.gene055864.t1 MTR_1g040925 75.753 598 127 2 79 674 360 941 0.0 932
MS.gene055864.t1 MTR_1g040925 72.881 295 80 0 1 295 65 359 1.21e-146 450
MS.gene055864.t1 MTR_1g040995 77.586 522 115 1 79 598 360 881 0.0 838
MS.gene055864.t1 MTR_1g040995 72.881 295 80 0 1 295 65 359 5.17e-147 449
MS.gene055864.t1 MTR_5g039770 56.490 678 267 6 1 674 1 654 0.0 763
MS.gene055864.t1 MTR_7g039790 56.765 680 261 7 1 674 65 717 0.0 760
MS.gene055864.t1 MTR_7g445240 55.030 676 263 6 1 674 65 701 0.0 728
MS.gene055864.t1 MTR_5g040040 64.773 528 79 5 147 674 166 586 0.0 657
MS.gene055864.t1 MTR_5g039890 69.853 408 78 2 1 363 56 463 0.0 569
MS.gene055864.t1 MTR_2g019260 41.194 687 371 14 1 674 126 792 8.39e-168 500
MS.gene055864.t1 MTR_5g040180 71.885 313 87 1 1 313 48 359 1.11e-162 472
MS.gene055864.t1 MTR_7g039680 71.207 323 69 3 1 322 56 355 1.56e-158 461
MS.gene055864.t1 MTR_2g019260 40.553 651 356 13 1 638 126 758 2.44e-154 465
MS.gene055864.t1 MTR_7g039440 71.622 296 83 1 18 313 1 295 2.78e-153 445
MS.gene055864.t1 MTR_7g039430 71.886 281 78 1 1 281 48 327 1.06e-142 420
MS.gene055864.t1 MTR_5g040190 68.683 281 87 1 1 281 48 327 3.37e-135 401
MS.gene055864.t1 MTR_7g108340 35.878 655 392 11 38 674 91 735 1.83e-130 402
MS.gene055864.t1 MTR_2g437390 34.564 677 409 12 22 674 76 742 1.40e-129 400
MS.gene055864.t1 MTR_4g119413 35.000 660 397 11 38 674 94 744 8.47e-127 393
MS.gene055864.t1 MTR_1g040965 81.019 216 41 0 459 674 3 218 1.43e-122 363
MS.gene055864.t1 MTR_4g119413 33.065 496 306 9 38 510 94 586 1.26e-85 281
MS.gene055864.t1 MTR_5g040230 72.956 159 43 0 1 159 109 267 7.83e-77 247
MS.gene055864.t1 MTR_7g039380 71.698 159 45 0 1 159 48 206 1.59e-76 244
MS.gene055864.t1 MTR_7g039770 59.434 106 41 1 406 509 1 106 3.37e-37 137
MS.gene055864.t1 MTR_7g039770 64.130 92 33 0 583 674 105 196 1.52e-30 119
MS.gene055864.t1 MTR_7g445230 59.434 106 41 1 406 509 1 106 3.37e-37 137
MS.gene055864.t1 MTR_7g445230 64.130 92 33 0 583 674 105 196 1.52e-30 119
MS.gene055864.t1 MTR_5g039820 44.512 164 51 2 511 674 1 124 7.54e-32 120
MS.gene055864.t1 MTR_1g099430 40.870 115 30 2 560 674 19 95 8.00e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055864.t1 AT1G26830 81.602 674 124 0 1 674 59 732 0.0 1177
MS.gene055864.t1 AT1G69670 80.564 674 131 0 1 674 59 732 0.0 1163
MS.gene055864.t1 AT1G69670 80.564 674 131 0 1 674 59 732 0.0 1163
MS.gene055864.t1 AT5G46210 40.703 683 380 13 1 674 126 792 1.90e-159 479
MS.gene055864.t1 AT4G02570 35.258 658 395 11 38 674 91 738 5.05e-132 406
MS.gene055864.t1 AT4G02570 35.258 658 395 11 38 674 91 738 5.05e-132 406
MS.gene055864.t1 AT4G02570 35.258 658 395 11 38 674 91 738 5.05e-132 406
MS.gene055864.t1 AT4G02570 35.258 658 395 11 38 674 91 738 5.05e-132 406
MS.gene055864.t1 AT1G02980 33.234 674 416 12 25 674 79 742 5.11e-116 365
MS.gene055864.t1 AT1G02980 33.234 674 416 12 25 674 79 742 5.11e-116 365
MS.gene055864.t1 AT1G43140 32.263 685 418 16 6 674 67 721 1.10e-103 332
MS.gene055864.t1 AT1G59790 26.962 293 201 6 22 308 79 364 3.93e-29 120
MS.gene055864.t1 AT1G59790 27.530 247 170 5 22 262 79 322 1.38e-26 112
MS.gene055864.t1 AT1G59800 29.775 178 120 2 22 196 72 247 3.78e-22 97.1
MS.gene055864.t1 AT4G12100 22.388 268 181 8 6 259 118 372 1.89e-12 70.5

Find 139 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGATCCTTCAATCTTTC+AGG 0.166080 8.3:-42958526 None:intergenic
AATATGGTGCTTCACAAATT+TGG 0.198790 8.3:+42957731 None:intergenic
CACAACACTCAATGAATCTT+TGG 0.228824 8.3:-42958195 None:intergenic
TACTCATCGGCTCCTTTCTA+AGG 0.269735 8.3:-42959383 None:intergenic
TTAATCCATATGGAGAATTC+TGG 0.298338 8.3:+42958358 MS.gene055864:CDS
AAACTATACAAGGTTAAAAT+AGG 0.302125 8.3:+42959456 MS.gene055864:CDS
ACAATCATTGGCTTTAGTTA+AGG 0.303291 8.3:+42959350 MS.gene055864:CDS
TGATGATAAATATGAAGATT+TGG 0.316741 8.3:+42958399 MS.gene055864:CDS
CAATCATTGGCTTTAGTTAA+GGG 0.333046 8.3:+42959351 MS.gene055864:CDS
ACGAGGAATTCAAAGCATTC+TGG 0.343800 8.3:-42958630 None:intergenic
GCAGACTTAAAAGCAACCTT+TGG 0.354772 8.3:+42959189 MS.gene055864:CDS
CTGCACTTTGCGAGAAGTTT+CGG 0.357858 8.3:+42959106 MS.gene055864:CDS
TCGGCTACTGAACACACTTC+TGG 0.360939 8.3:+42958018 MS.gene055864:CDS
TAAGAGATGTCTACAATCAT+TGG 0.371194 8.3:+42959338 MS.gene055864:CDS
TCAGTTTACATCAAAATTAG+AGG 0.377339 8.3:+42958924 MS.gene055864:CDS
ATGCGTTTCTTGACCTCTGT+TGG 0.385513 8.3:-42959663 None:intergenic
AGTTTCCTGTTTCTCAGGTT+CGG 0.385761 8.3:-42959502 None:intergenic
TGCCGAGTTTCCTGTTTCTC+AGG 0.386423 8.3:-42959507 None:intergenic
TGGAAGAACTGAACAGGAAA+TGG 0.387376 8.3:+42957846 MS.gene055864:CDS
ACTGTCCAGGTTCTTACAAC+AGG 0.395150 8.3:+42959033 MS.gene055864:CDS
TGAAATGAACTCTGGAGAAC+GGG 0.408147 8.3:-42958677 None:intergenic
GTAGGACCGTCGCCTAAGTC+AGG 0.411159 8.3:-42959006 None:intergenic
GGAATCCGAACCTGAGAAAC+AGG 0.414007 8.3:+42959497 MS.gene055864:CDS
TCATTTATTCCAACCAGATC+AGG 0.420558 8.3:+42957993 MS.gene055864:CDS
TATTACCTTGGCACACATAC+TGG 0.423807 8.3:+42959132 MS.gene055864:CDS
ACAACACTCAATGAATCTTT+GGG 0.423919 8.3:-42958194 None:intergenic
CAGCATTATTGAAAAGCATA+AGG 0.426039 8.3:-42959260 None:intergenic
GATGATAAATATGAAGATTT+GGG 0.429458 8.3:+42958400 MS.gene055864:CDS
AGCCTCTGCACAAACTCAAC+TGG 0.433380 8.3:-42958544 None:intergenic
CATGCTCAGATTAATCCATA+TGG 0.434059 8.3:+42958348 MS.gene055864:CDS
ACTTCACACATAAGGGAATC+TGG 0.436605 8.3:+42958484 MS.gene055864:CDS
AGGAACTGTAGTTGCACAAA+AGG 0.436933 8.3:+42959476 MS.gene055864:CDS
GTCGCCTAAGTCAGGGTGGC+TGG 0.440169 8.3:-42958998 None:intergenic
TACTGATCCTGAAAGATTGA+AGG 0.441993 8.3:+42958519 MS.gene055864:CDS
ACTTGTCATTGTTGAATGCC+AGG 0.444070 8.3:-42958603 None:intergenic
AACTCGGCAGCGAGTGGAGG+AGG 0.446158 8.3:+42959521 MS.gene055864:CDS
AAAGCATAAGGACACACATT+TGG 0.448174 8.3:-42959248 None:intergenic
GGCAGCGAGTGGAGGAGGAC+AGG 0.448240 8.3:+42959526 MS.gene055864:CDS
GAAGTATTATAAACAGCATC+TGG 0.448249 8.3:+42958819 MS.gene055864:CDS
CTAAACCAGAATTCTCCATA+TGG 0.453764 8.3:-42958363 None:intergenic
TAGTGAGGATCATGAAATCT+AGG 0.463511 8.3:+42959571 MS.gene055864:CDS
TATGCCAGCCACCCTGACTT+AGG 0.464316 8.3:+42958994 MS.gene055864:CDS
TGCTTCACAAATTTGGTGAT+AGG 0.469912 8.3:+42957738 MS.gene055864:CDS
TGTAGATGATAAACTTCGTA+AGG 0.470956 8.3:+42958705 MS.gene055864:CDS
AGCAACTGAGATTCCTGCTC+CGG 0.471327 8.3:+42959311 MS.gene055864:CDS
AGGTGATGACTTCACACATA+AGG 0.478646 8.3:+42958476 MS.gene055864:CDS
CAGTCTCGGGATCCATGTAA+TGG 0.479832 8.3:-42958279 None:intergenic
ACTGGTGAAGTTATTGATAG+AGG 0.485538 8.3:+42958061 MS.gene055864:CDS
AACCTCTCAGGACACAATGC+AGG 0.487006 8.3:+42958966 MS.gene055864:CDS
TGAAAAGAAGATTAATAAAG+TGG 0.488330 8.3:+42958300 MS.gene055864:CDS
TCAGTAGCCGAGTCCTGATC+TGG 0.488597 8.3:-42958006 None:intergenic
AGGTTCTTACAACAGGGTCT+TGG 0.488962 8.3:+42959040 MS.gene055864:CDS
TTCATTGAGTGTTGTGATTG+TGG 0.489826 8.3:+42958202 MS.gene055864:CDS
TTCAGCCCGAGTTCATGAAC+AGG 0.490428 8.3:-42957953 None:intergenic
GAGGCGTCTGAATGAGGAAA+TGG 0.490900 8.3:+42958246 MS.gene055864:CDS
CGGTCCTACGCTTACTGTCC+AGG 0.496060 8.3:+42959020 MS.gene055864:CDS
AACTTCGTAAGGGTCTGAAA+GGG 0.499438 8.3:+42958716 MS.gene055864:CDS
GGTGATGACTTCACACATAA+GGG 0.500163 8.3:+42958477 MS.gene055864:CDS
CAGACTTAAAAGCAACCTTT+GGG 0.500900 8.3:+42959190 MS.gene055864:CDS
TGATAGGTTGTACTCAGGAT+TGG 0.503047 8.3:+42957754 MS.gene055864:CDS
AAGACTCCTGTTCATGAACT+CGG 0.516778 8.3:+42957947 MS.gene055864:CDS
TGACCTCTGTTGGATTTGCA+AGG 0.526865 8.3:-42959653 None:intergenic
AAACTTCGTAAGGGTCTGAA+AGG 0.527114 8.3:+42958715 MS.gene055864:CDS
GGGAAGAAATGTCCTTAGAA+AGG 0.527346 8.3:+42959371 MS.gene055864:CDS
ACAAATAGTGAAATGAACTC+TGG 0.529442 8.3:-42958685 None:intergenic
AGCTGAGAGGCGTCTGAATG+AGG 0.532045 8.3:+42958240 MS.gene055864:CDS
TGTAGACATCTCTTAAGATC+CGG 0.532519 8.3:-42959330 None:intergenic
GTGCAGATATTTCCACCGGC+AGG 0.534110 8.3:-42959089 None:intergenic
GAGTATTACGTGCAACCTGC+CGG 0.536343 8.3:+42959074 MS.gene055864:CDS
CTGGTGAAGTTATTGATAGA+GGG 0.538344 8.3:+42958062 MS.gene055864:CDS
ATTGTCGTGGCAAACTAACA+TGG 0.547488 8.3:+42959161 MS.gene055864:CDS
TACAGACATGAAAACCTCTC+AGG 0.548291 8.3:+42958954 MS.gene055864:CDS
GGACAGGAAGCCTCAGATTG+AGG 0.548487 8.3:+42959542 MS.gene055864:CDS
ATGAACTCGGGCTGAATCTG+TGG 0.550756 8.3:+42957960 MS.gene055864:CDS
GGATAGAGTTAGCCATTACA+TGG 0.551642 8.3:+42958267 MS.gene055864:CDS
AAGTTTCGGTCTTATTACCT+TGG 0.552048 8.3:+42959120 MS.gene055864:CDS
AAGACCCTGTTGTAAGAACC+TGG 0.553834 8.3:-42959038 None:intergenic
TTTGGTGATAGGTTGTACTC+AGG 0.562234 8.3:+42957749 MS.gene055864:CDS
CTTAAAAGCAACCTTTGGGA+AGG 0.563218 8.3:+42959194 MS.gene055864:CDS
TGTAAACTGATAGCCACATT+CGG 0.563890 8.3:-42958911 None:intergenic
AAATCTATTGAAGCAGCTCA+AGG 0.568181 8.3:+42957812 MS.gene055864:CDS
TGCTGATAAACTTAGCTACA+AGG 0.569495 8.3:+42959278 MS.gene055864:CDS
AGACTCCTGTTCATGAACTC+GGG 0.571232 8.3:+42957948 MS.gene055864:CDS
CATCTCTTAAGATCCGGAGC+AGG 0.571367 8.3:-42959324 None:intergenic
ACCTTGGCACACATACTGGC+AGG 0.571727 8.3:+42959136 MS.gene055864:CDS
GTGAAATGAACTCTGGAGAA+CGG 0.575403 8.3:-42958678 None:intergenic
ACAGGAAACTCGGCAGCGAG+TGG 0.580836 8.3:+42959515 MS.gene055864:CDS
AGCCACCCTGACTTAGGCGA+CGG 0.585562 8.3:+42959000 MS.gene055864:CDS
TTAAAAGCAACCTTTGGGAA+GGG 0.586426 8.3:+42959195 MS.gene055864:CDS
ACTATCGCCGCCTCAATCTG+AGG 0.586727 8.3:-42959552 None:intergenic
ATAAATATGAAGATTTGGGT+AGG 0.586773 8.3:+42958404 MS.gene055864:CDS
TCCTGCCAGTATGTGTGCCA+AGG 0.587792 8.3:-42959137 None:intergenic
ATACGACAAGATTATAAACC+TGG 0.588266 8.3:+42958585 MS.gene055864:CDS
GGATGATGTAGAGGTTACTC+TGG 0.590036 8.3:+42958747 MS.gene055864:CDS
CATAAGGACACACATTTGGT+AGG 0.591138 8.3:-42959244 None:intergenic
CAGTTTACATCAAAATTAGA+GGG 0.591739 8.3:+42958925 MS.gene055864:CDS
AACCTGAGAAACAGGAAACT+CGG 0.594659 8.3:+42959505 MS.gene055864:CDS
CAAAGTGCAGATATTTCCAC+CGG 0.598009 8.3:-42959093 None:intergenic
ATTCCAACCAGATCAGGACT+CGG 0.601328 8.3:+42957999 MS.gene055864:CDS
ATGCTTCTGACCCTTCCCAA+AGG 0.602178 8.3:-42959205 None:intergenic
CTTAACAATGAGACTTCTCT+CGG 0.603477 8.3:-42958881 None:intergenic
TCACCAACATCTTTACTCAT+CGG 0.604309 8.3:-42959396 None:intergenic
TAGAGATATACTGATGTACA+TGG 0.604770 8.3:+42957898 MS.gene055864:CDS
AATTCTTGAGCATAAACAGA+TGG 0.606533 8.3:-42958124 None:intergenic
GTAGATGATAAACTTCGTAA+GGG 0.607058 8.3:+42958706 MS.gene055864:CDS
CACGTAATACTCGACTGAGT+TGG 0.607158 8.3:-42959063 None:intergenic
CTGTCCAGGTTCTTACAACA+GGG 0.608852 8.3:+42959034 MS.gene055864:CDS
ACCTCTCAGGACACAATGCA+GGG 0.612857 8.3:+42958967 MS.gene055864:CDS
TAGGACCGTCGCCTAAGTCA+GGG 0.612941 8.3:-42959005 None:intergenic
GGAAACTCGGCAGCGAGTGG+AGG 0.615424 8.3:+42959518 MS.gene055864:CDS
GTTAAGCTCAAGACCGAATG+TGG 0.616613 8.3:+42958898 MS.gene055864:CDS
AAAGAAGATTAATAAAGTGG+TGG 0.620743 8.3:+42958303 MS.gene055864:CDS
TAGCCGAGTCCTGATCTGGT+TGG 0.622232 8.3:-42958002 None:intergenic
AGATTGAGGCGGCGATAGTG+AGG 0.627417 8.3:+42959556 MS.gene055864:CDS
GAAATGAACTCTGGAGAACG+GGG 0.628544 8.3:-42958676 None:intergenic
ATAAACAGCATCTGGCAAAG+AGG 0.630265 8.3:+42958827 MS.gene055864:CDS
GTTCAGTAGTAAACTATACA+AGG 0.638422 8.3:+42959446 MS.gene055864:CDS
CAGGAAGCCTCAGATTGAGG+CGG 0.640359 8.3:+42959545 MS.gene055864:CDS
GGTCAACGAGGATGATGTAG+AGG 0.645668 8.3:+42958738 MS.gene055864:CDS
GAGCCGATGAGTAAAGATGT+TGG 0.646356 8.3:+42959393 MS.gene055864:CDS
ACTTCGTAAGGGTCTGAAAG+GGG 0.649523 8.3:+42958717 MS.gene055864:CDS
TTGTCGTGGCAAACTAACAT+GGG 0.652331 8.3:+42959162 MS.gene055864:CDS
GCCCTGCATTGTGTCCTGAG+AGG 0.655976 8.3:-42958968 None:intergenic
TTAGTACATAGTGAACGCAC+TGG 0.661997 8.3:+42958043 MS.gene055864:CDS
TATTACGTGCAACCTGCCGG+TGG 0.663897 8.3:+42959077 MS.gene055864:CDS
TTGTTCCGTCGTGTAACCGA+CGG 0.664584 8.3:+42958436 MS.gene055864:CDS
TGTAGAGGTTACTCTGGACA+AGG 0.664682 8.3:+42958753 MS.gene055864:CDS
ATCCAGTTGAGTTTGTGCAG+AGG 0.670411 8.3:+42958542 MS.gene055864:CDS
GACCGTCGCCTAAGTCAGGG+TGG 0.696070 8.3:-42959002 None:intergenic
TTTCCTTGCAAATCCAACAG+AGG 0.698003 8.3:+42959650 MS.gene055864:CDS
AGAACCTGGACAGTAAGCGT+AGG 0.706663 8.3:-42959024 None:intergenic
TCTATTGAAGCAGCTCAAGG+AGG 0.716304 8.3:+42957815 MS.gene055864:CDS
GGGTCTGAAAGGGGTCAACG+AGG 0.729389 8.3:+42958726 MS.gene055864:CDS
GTTAATGAAATATTCAAACG+AGG 0.733246 8.3:-42958647 None:intergenic
GATGAGTAAAGATGTTGGTG+AGG 0.734708 8.3:+42959398 MS.gene055864:CDS
AAATGAACTCTGGAGAACGG+GGG 0.742959 8.3:-42958675 None:intergenic
ATACTGGCAGGAGATTGTCG+TGG 0.746214 8.3:+42959148 MS.gene055864:CDS
AAAGACCGTCGGTTACACGA+CGG 0.749089 8.3:-42958441 None:intergenic
ATTATCTTAAGAAAGCTGAG+AGG 0.761790 8.3:+42958227 MS.gene055864:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAACAAAAATGCTAA+TGG + chr8.3:42958093-42958112 MS.gene055864:CDS 15.0%
!! AAACTATACAAGGTTAAAAT+AGG + chr8.3:42959456-42959475 MS.gene055864:CDS 20.0%
!! GATGATAAATATGAAGATTT+GGG + chr8.3:42958400-42958419 MS.gene055864:CDS 20.0%
!! TGAAAAGAAGATTAATAAAG+TGG + chr8.3:42958300-42958319 MS.gene055864:CDS 20.0%
!! TGATGATAAATATGAAGATT+TGG + chr8.3:42958399-42958418 MS.gene055864:CDS 20.0%
! AAAGAAGATTAATAAAGTGG+TGG + chr8.3:42958303-42958322 MS.gene055864:CDS 25.0%
! ATAAATATGAAGATTTGGGT+AGG + chr8.3:42958404-42958423 MS.gene055864:CDS 25.0%
! ATAACGACAGAAAAATGTAT+CGG + chr8.3:42959724-42959743 MS.gene055864:CDS 25.0%
! CAGTTTACATCAAAATTAGA+GGG + chr8.3:42958925-42958944 MS.gene055864:CDS 25.0%
! GTTAATGAAATATTCAAACG+AGG - chr8.3:42958650-42958669 None:intergenic 25.0%
! TCAGTTTACATCAAAATTAG+AGG + chr8.3:42958924-42958943 MS.gene055864:CDS 25.0%
!! ATTAATCTTCTTTTCAGTCT+CGG - chr8.3:42958296-42958315 None:intergenic 25.0%
!!! ACAAAAATGCTAATGGATTT+AGG + chr8.3:42958100-42958119 MS.gene055864:CDS 25.0%
AATTCTTGAGCATAAACAGA+TGG - chr8.3:42958127-42958146 None:intergenic 30.0%
ACAAATAGTGAAATGAACTC+TGG - chr8.3:42958688-42958707 None:intergenic 30.0%
ACAACACTCAATGAATCTTT+GGG - chr8.3:42958197-42958216 None:intergenic 30.0%
ATACGACAAGATTATAAACC+TGG + chr8.3:42958585-42958604 MS.gene055864:CDS 30.0%
ATTATCTTAAGAAAGCTGAG+AGG + chr8.3:42958227-42958246 MS.gene055864:CDS 30.0%
GTAGATGATAAACTTCGTAA+GGG + chr8.3:42958706-42958725 MS.gene055864:CDS 30.0%
GTTCAGTAGTAAACTATACA+AGG + chr8.3:42959446-42959465 MS.gene055864:CDS 30.0%
TAAGAGATGTCTACAATCAT+TGG + chr8.3:42959338-42959357 MS.gene055864:CDS 30.0%
TAGAGATATACTGATGTACA+TGG + chr8.3:42957898-42957917 MS.gene055864:CDS 30.0%
TGTAGATGATAAACTTCGTA+AGG + chr8.3:42958705-42958724 MS.gene055864:CDS 30.0%
TTAATCCATATGGAGAATTC+TGG + chr8.3:42958358-42958377 MS.gene055864:CDS 30.0%
! CAGCATTATTGAAAAGCATA+AGG - chr8.3:42959263-42959282 None:intergenic 30.0%
! CATCTTTTTCTTGCAAGTAT+CGG - chr8.3:42958792-42958811 None:intergenic 30.0%
! GAAGTATTATAAACAGCATC+TGG + chr8.3:42958819-42958838 MS.gene055864:CDS 30.0%
! TTAATCTTCTTTTCAGTCTC+GGG - chr8.3:42958295-42958314 None:intergenic 30.0%
!! ACAATCATTGGCTTTAGTTA+AGG + chr8.3:42959350-42959369 MS.gene055864:CDS 30.0%
!! CAATCATTGGCTTTAGTTAA+GGG + chr8.3:42959351-42959370 MS.gene055864:CDS 30.0%
AAAGCATAAGGACACACATT+TGG - chr8.3:42959251-42959270 None:intergenic 35.0%
AAATCTATTGAAGCAGCTCA+AGG + chr8.3:42957812-42957831 MS.gene055864:CDS 35.0%
ACTGGTGAAGTTATTGATAG+AGG + chr8.3:42958061-42958080 MS.gene055864:CDS 35.0%
CACAACACTCAATGAATCTT+TGG - chr8.3:42958198-42958217 None:intergenic 35.0%
CAGACTTAAAAGCAACCTTT+GGG + chr8.3:42959190-42959209 MS.gene055864:CDS 35.0%
CATGCTCAGATTAATCCATA+TGG + chr8.3:42958348-42958367 MS.gene055864:CDS 35.0%
CTAAACCAGAATTCTCCATA+TGG - chr8.3:42958366-42958385 None:intergenic 35.0%
CTGGTGAAGTTATTGATAGA+GGG + chr8.3:42958062-42958081 MS.gene055864:CDS 35.0%
CTTAACAATGAGACTTCTCT+CGG - chr8.3:42958884-42958903 None:intergenic 35.0%
TACTGATCCTGAAAGATTGA+AGG + chr8.3:42958519-42958538 MS.gene055864:CDS 35.0%
TAGTGAGGATCATGAAATCT+AGG + chr8.3:42959571-42959590 MS.gene055864:CDS 35.0%
TCACCAACATCTTTACTCAT+CGG - chr8.3:42959399-42959418 None:intergenic 35.0%
TCATTTATTCCAACCAGATC+AGG + chr8.3:42957993-42958012 MS.gene055864:CDS 35.0%
TGCTGATAAACTTAGCTACA+AGG + chr8.3:42959278-42959297 MS.gene055864:CDS 35.0%
TGTAAACTGATAGCCACATT+CGG - chr8.3:42958914-42958933 None:intergenic 35.0%
TGTAGACATCTCTTAAGATC+CGG - chr8.3:42959333-42959352 None:intergenic 35.0%
! TCGTATTTTCAAAAGACCGT+CGG - chr8.3:42958455-42958474 None:intergenic 35.0%
! TGCTTCACAAATTTGGTGAT+AGG + chr8.3:42957738-42957757 MS.gene055864:CDS 35.0%
! TTAAAAGCAACCTTTGGGAA+GGG + chr8.3:42959195-42959214 MS.gene055864:CDS 35.0%
! TTCATGAACAGGAGTCTTTT+TGG - chr8.3:42957945-42957964 None:intergenic 35.0%
! TTCATTGAGTGTTGTGATTG+TGG + chr8.3:42958202-42958221 MS.gene055864:CDS 35.0%
!! AAGTTTCGGTCTTATTACCT+TGG + chr8.3:42959120-42959139 MS.gene055864:CDS 35.0%
!! AGTTTCAGCTGAGTTTTATC+AGG + chr8.3:42958165-42958184 MS.gene055864:CDS 35.0%
AAACTTCGTAAGGGTCTGAA+AGG + chr8.3:42958715-42958734 MS.gene055864:CDS 40.0%
AACCTGAGAAACAGGAAACT+CGG + chr8.3:42959505-42959524 MS.gene055864:CDS 40.0%
AACTTCGTAAGGGTCTGAAA+GGG + chr8.3:42958716-42958735 MS.gene055864:CDS 40.0%
AAGACTCCTGTTCATGAACT+CGG + chr8.3:42957947-42957966 MS.gene055864:CDS 40.0%
ACTGGATCCTTCAATCTTTC+AGG - chr8.3:42958529-42958548 None:intergenic 40.0%
ACTTCACACATAAGGGAATC+TGG + chr8.3:42958484-42958503 MS.gene055864:CDS 40.0%
ACTTGTCATTGTTGAATGCC+AGG - chr8.3:42958606-42958625 None:intergenic 40.0%
AGGAACTGTAGTTGCACAAA+AGG + chr8.3:42959476-42959495 MS.gene055864:CDS 40.0%
AGGTGATGACTTCACACATA+AGG + chr8.3:42958476-42958495 MS.gene055864:CDS 40.0%
ATAAACAGCATCTGGCAAAG+AGG + chr8.3:42958827-42958846 MS.gene055864:CDS 40.0%
ATTGTCGTGGCAAACTAACA+TGG + chr8.3:42959161-42959180 MS.gene055864:CDS 40.0%
CAAAGTGCAGATATTTCCAC+CGG - chr8.3:42959096-42959115 None:intergenic 40.0%
CATAAGGACACACATTTGGT+AGG - chr8.3:42959247-42959266 None:intergenic 40.0%
GATGAGTAAAGATGTTGGTG+AGG + chr8.3:42959398-42959417 MS.gene055864:CDS 40.0%
GCAGACTTAAAAGCAACCTT+TGG + chr8.3:42959189-42959208 MS.gene055864:CDS 40.0%
GGATAGAGTTAGCCATTACA+TGG + chr8.3:42958267-42958286 MS.gene055864:CDS 40.0%
GGGAAGAAATGTCCTTAGAA+AGG + chr8.3:42959371-42959390 MS.gene055864:CDS 40.0%
GGTGATGACTTCACACATAA+GGG + chr8.3:42958477-42958496 MS.gene055864:CDS 40.0%
TACAGACATGAAAACCTCTC+AGG + chr8.3:42958954-42958973 MS.gene055864:CDS 40.0%
TATTACCTTGGCACACATAC+TGG + chr8.3:42959132-42959151 MS.gene055864:CDS 40.0%
TGATAGGTTGTACTCAGGAT+TGG + chr8.3:42957754-42957773 MS.gene055864:CDS 40.0%
TGGAAGAACTGAACAGGAAA+TGG + chr8.3:42957846-42957865 MS.gene055864:CDS 40.0%
TTAGTACATAGTGAACGCAC+TGG + chr8.3:42958043-42958062 MS.gene055864:CDS 40.0%
TTGTCGTGGCAAACTAACAT+GGG + chr8.3:42959162-42959181 MS.gene055864:CDS 40.0%
TTTCCTTGCAAATCCAACAG+AGG + chr8.3:42959650-42959669 MS.gene055864:CDS 40.0%
! ACGAGGAATTCAAAGCATTC+TGG - chr8.3:42958633-42958652 None:intergenic 40.0%
! AGTTTCCTGTTTCTCAGGTT+CGG - chr8.3:42959505-42959524 None:intergenic 40.0%
! CTTAAAAGCAACCTTTGGGA+AGG + chr8.3:42959194-42959213 MS.gene055864:CDS 40.0%
! GAGGCTTTTGTCTGGAAAAA+CGG + chr8.3:42958846-42958865 MS.gene055864:CDS 40.0%
! GTGAAATGAACTCTGGAGAA+CGG - chr8.3:42958681-42958700 None:intergenic 40.0%
! TCTCATTGAGCGAGACTTTT+TGG + chr8.3:42959692-42959711 MS.gene055864:CDS 40.0%
! TGAAATGAACTCTGGAGAAC+GGG - chr8.3:42958680-42958699 None:intergenic 40.0%
! TTTGGTGATAGGTTGTACTC+AGG + chr8.3:42957749-42957768 MS.gene055864:CDS 40.0%
!! CGGTCTTTTGAAAATACGAG+AGG + chr8.3:42958456-42958475 MS.gene055864:CDS 40.0%
!! CTTTTCTGGAAGAACTGAAC+AGG + chr8.3:42957840-42957859 MS.gene055864:CDS 40.0%
AAGACCCTGTTGTAAGAACC+TGG - chr8.3:42959041-42959060 None:intergenic 45.0%
ACTGTCCAGGTTCTTACAAC+AGG + chr8.3:42959033-42959052 MS.gene055864:CDS 45.0%
ACTTCGTAAGGGTCTGAAAG+GGG + chr8.3:42958717-42958736 MS.gene055864:CDS 45.0%
AGACTCCTGTTCATGAACTC+GGG + chr8.3:42957948-42957967 MS.gene055864:CDS 45.0%
AGGTTCTTACAACAGGGTCT+TGG + chr8.3:42959040-42959059 MS.gene055864:CDS 45.0%
ATCCAGTTGAGTTTGTGCAG+AGG + chr8.3:42958542-42958561 MS.gene055864:CDS 45.0%
ATGCGTTTCTTGACCTCTGT+TGG - chr8.3:42959666-42959685 None:intergenic 45.0%
ATTCCAACCAGATCAGGACT+CGG + chr8.3:42957999-42958018 MS.gene055864:CDS 45.0%
CACGTAATACTCGACTGAGT+TGG - chr8.3:42959066-42959085 None:intergenic 45.0%
CTGCACTTTGCGAGAAGTTT+CGG + chr8.3:42959106-42959125 MS.gene055864:CDS 45.0%
CTGTCCAGGTTCTTACAACA+GGG + chr8.3:42959034-42959053 MS.gene055864:CDS 45.0%
GAGCCGATGAGTAAAGATGT+TGG + chr8.3:42959393-42959412 MS.gene055864:CDS 45.0%
GGATGATGTAGAGGTTACTC+TGG + chr8.3:42958747-42958766 MS.gene055864:CDS 45.0%
GTTAAGCTCAAGACCGAATG+TGG + chr8.3:42958898-42958917 MS.gene055864:CDS 45.0%
TCTATTGAAGCAGCTCAAGG+AGG + chr8.3:42957815-42957834 MS.gene055864:CDS 45.0%
TGACCTCTGTTGGATTTGCA+AGG - chr8.3:42959656-42959675 None:intergenic 45.0%
TGTAGAGGTTACTCTGGACA+AGG + chr8.3:42958753-42958772 MS.gene055864:CDS 45.0%
! AAATGAACTCTGGAGAACGG+GGG - chr8.3:42958678-42958697 None:intergenic 45.0%
! AGCTCAAGGAGGATCTTTTC+TGG + chr8.3:42957826-42957845 MS.gene055864:CDS 45.0%
! GAAATGAACTCTGGAGAACG+GGG - chr8.3:42958679-42958698 None:intergenic 45.0%
!! ACAGGAGTCTTTTTGGCACT+TGG - chr8.3:42957938-42957957 None:intergenic 45.0%
!! TACTCATCGGCTCCTTTCTA+AGG - chr8.3:42959386-42959405 None:intergenic 45.0%
!! TGAGCGAGACTTTTTGGAGA+GGG + chr8.3:42959698-42959717 MS.gene055864:CDS 45.0%
!! TTGAGCGAGACTTTTTGGAG+AGG + chr8.3:42959697-42959716 MS.gene055864:CDS 45.0%
AACCTCTCAGGACACAATGC+AGG + chr8.3:42958966-42958985 MS.gene055864:CDS 50.0%
ACCTCTCAGGACACAATGCA+GGG + chr8.3:42958967-42958986 MS.gene055864:CDS 50.0%
AGAACCTGGACAGTAAGCGT+AGG - chr8.3:42959027-42959046 None:intergenic 50.0%
AGCAACTGAGATTCCTGCTC+CGG + chr8.3:42959311-42959330 MS.gene055864:CDS 50.0%
AGCCTCTGCACAAACTCAAC+TGG - chr8.3:42958547-42958566 None:intergenic 50.0%
ATACTGGCAGGAGATTGTCG+TGG + chr8.3:42959148-42959167 MS.gene055864:CDS 50.0%
ATGAACTCGGGCTGAATCTG+TGG + chr8.3:42957960-42957979 MS.gene055864:CDS 50.0%
ATGCTTCTGACCCTTCCCAA+AGG - chr8.3:42959208-42959227 None:intergenic 50.0%
CAGTCTCGGGATCCATGTAA+TGG - chr8.3:42958282-42958301 None:intergenic 50.0%
CATCTCTTAAGATCCGGAGC+AGG - chr8.3:42959327-42959346 None:intergenic 50.0%
GAGTATTACGTGCAACCTGC+CGG + chr8.3:42959074-42959093 MS.gene055864:CDS 50.0%
GGAATCCGAACCTGAGAAAC+AGG + chr8.3:42959497-42959516 MS.gene055864:CDS 50.0%
GGTCAACGAGGATGATGTAG+AGG + chr8.3:42958738-42958757 MS.gene055864:CDS 50.0%
TCGGCTACTGAACACACTTC+TGG + chr8.3:42958018-42958037 MS.gene055864:CDS 50.0%
TTCAGCCCGAGTTCATGAAC+AGG - chr8.3:42957956-42957975 None:intergenic 50.0%
TTGTTCCGTCGTGTAACCGA+CGG + chr8.3:42958436-42958455 MS.gene055864:CDS 50.0%
! AAAGACCGTCGGTTACACGA+CGG - chr8.3:42958444-42958463 None:intergenic 50.0%
! CTGGCAAAGAGGCTTTTGTC+TGG + chr8.3:42958838-42958857 MS.gene055864:CDS 50.0%
! GAGGCGTCTGAATGAGGAAA+TGG + chr8.3:42958246-42958265 MS.gene055864:CDS 50.0%
! TGCCGAGTTTCCTGTTTCTC+AGG - chr8.3:42959510-42959529 None:intergenic 50.0%
ACCTTGGCACACATACTGGC+AGG + chr8.3:42959136-42959155 MS.gene055864:CDS 55.0%
ACTATCGCCGCCTCAATCTG+AGG - chr8.3:42959555-42959574 None:intergenic 55.0%
AGATTGAGGCGGCGATAGTG+AGG + chr8.3:42959556-42959575 MS.gene055864:CDS 55.0%
CAGGAAGCCTCAGATTGAGG+CGG + chr8.3:42959545-42959564 MS.gene055864:CDS 55.0%
GGACAGGAAGCCTCAGATTG+AGG + chr8.3:42959542-42959561 MS.gene055864:CDS 55.0%
GTGCAGATATTTCCACCGGC+AGG - chr8.3:42959092-42959111 None:intergenic 55.0%
TAGCCGAGTCCTGATCTGGT+TGG - chr8.3:42958005-42958024 None:intergenic 55.0%
TAGGACCGTCGCCTAAGTCA+GGG - chr8.3:42959008-42959027 None:intergenic 55.0%
TATGCCAGCCACCCTGACTT+AGG + chr8.3:42958994-42959013 MS.gene055864:CDS 55.0%
TATTACGTGCAACCTGCCGG+TGG + chr8.3:42959077-42959096 MS.gene055864:CDS 55.0%
TCAGTAGCCGAGTCCTGATC+TGG - chr8.3:42958009-42958028 None:intergenic 55.0%
TCCTGCCAGTATGTGTGCCA+AGG - chr8.3:42959140-42959159 None:intergenic 55.0%
!! AGCTGAGAGGCGTCTGAATG+AGG + chr8.3:42958240-42958259 MS.gene055864:CDS 55.0%
ACAGGAAACTCGGCAGCGAG+TGG + chr8.3:42959515-42959534 MS.gene055864:CDS 60.0%
AGCCACCCTGACTTAGGCGA+CGG + chr8.3:42959000-42959019 MS.gene055864:CDS 60.0%
CGGTCCTACGCTTACTGTCC+AGG + chr8.3:42959020-42959039 MS.gene055864:CDS 60.0%
GCCCTGCATTGTGTCCTGAG+AGG - chr8.3:42958971-42958990 None:intergenic 60.0%
GGGTCTGAAAGGGGTCAACG+AGG + chr8.3:42958726-42958745 MS.gene055864:CDS 60.0%
GTAGGACCGTCGCCTAAGTC+AGG - chr8.3:42959009-42959028 None:intergenic 60.0%
AACTCGGCAGCGAGTGGAGG+AGG + chr8.3:42959521-42959540 MS.gene055864:CDS 65.0%
GACCGTCGCCTAAGTCAGGG+TGG - chr8.3:42959005-42959024 None:intergenic 65.0%
GGAAACTCGGCAGCGAGTGG+AGG + chr8.3:42959518-42959537 MS.gene055864:CDS 65.0%
GTCGCCTAAGTCAGGGTGGC+TGG - chr8.3:42959001-42959020 None:intergenic 65.0%
GGCAGCGAGTGGAGGAGGAC+AGG + chr8.3:42959526-42959545 MS.gene055864:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 42957734 42959758 42957734 ID=MS.gene055864
chr8.3 mRNA 42957734 42959758 42957734 ID=MS.gene055864.t1;Parent=MS.gene055864
chr8.3 exon 42957734 42959758 42957734 ID=MS.gene055864.t1.exon1;Parent=MS.gene055864.t1
chr8.3 CDS 42957734 42959758 42957734 ID=cds.MS.gene055864.t1;Parent=MS.gene055864.t1
Gene Sequence

>MS.gene055864

ATGGTGCTTCACAAATTTGGTGATAGGTTGTACTCAGGATTGGTTGCGACTATGACTGCGCATCTCAAAGAAATAGCTAAATCTATTGAAGCAGCTCAAGGAGGATCTTTTCTGGAAGAACTGAACAGGAAATGGAATGATCATAACAAAGCATTGCAAATGATTAGAGATATACTGATGTACATGGACAGAACTTTCATTCCAAGTGCCAAAAAGACTCCTGTTCATGAACTCGGGCTGAATCTGTGGAAAGAAAATGTCATTTATTCCAACCAGATCAGGACTCGGCTACTGAACACACTTCTGGAATTAGTACATAGTGAACGCACTGGTGAAGTTATTGATAGAGGGATAATGAGAAATATAACAAAAATGCTAATGGATTTAGGTCCATCTGTTTATGCTCAAGAATTTGAGACTCATTTTCTTCAAGTTTCAGCTGAGTTTTATCAGGTAGAGTCCCAAAGATTCATTGAGTGTTGTGATTGTGGTGATTATCTTAAGAAAGCTGAGAGGCGTCTGAATGAGGAAATGGATAGAGTTAGCCATTACATGGATCCCGAGACTGAAAAGAAGATTAATAAAGTGGTGGAGACGCAGATGATTGAAAATCACATGCTCAGATTAATCCATATGGAGAATTCTGGTTTAGTCAACATGCTTTGTGATGATAAATATGAAGATTTGGGTAGGATGTATAACTTGTTCCGTCGTGTAACCGACGGTCTTTTGAAAATACGAGAGGTGATGACTTCACACATAAGGGAATCTGGTAAACAGCTTGTTACTGATCCTGAAAGATTGAAGGATCCAGTTGAGTTTGTGCAGAGGCTCTTAGATGAGAAAGACAAATACGACAAGATTATAAACCTGGCATTCAACAATGACAAGTCTTTCCAGAATGCTTTGAATTCCTCGTTTGAATATTTCATTAACTTGAACCCCCGTTCTCCAGAGTTCATTTCACTATTTGTAGATGATAAACTTCGTAAGGGTCTGAAAGGGGTCAACGAGGATGATGTAGAGGTTACTCTGGACAAGGTGATGATGCTGTTCCGATACTTGCAAGAAAAAGATGTTTTTGAGAAGTATTATAAACAGCATCTGGCAAAGAGGCTTTTGTCTGGAAAAACGGTTTCTGATGATGCCGAGAGAAGTCTCATTGTTAAGCTCAAGACCGAATGTGGCTATCAGTTTACATCAAAATTAGAGGGAATGTTTACAGACATGAAAACCTCTCAGGACACAATGCAGGGCTTTTATGCCAGCCACCCTGACTTAGGCGACGGTCCTACGCTTACTGTCCAGGTTCTTACAACAGGGTCTTGGCCAACTCAGTCGAGTATTACGTGCAACCTGCCGGTGGAAATATCTGCACTTTGCGAGAAGTTTCGGTCTTATTACCTTGGCACACATACTGGCAGGAGATTGTCGTGGCAAACTAACATGGGCTTTGCAGACTTAAAAGCAACCTTTGGGAAGGGTCAGAAGCATGAGTTAAACGTCTCTACCTACCAAATGTGTGTCCTTATGCTTTTCAATAATGCTGATAAACTTAGCTACAAGGAGATTGAGCAAGCAACTGAGATTCCTGCTCCGGATCTTAAGAGATGTCTACAATCATTGGCTTTAGTTAAGGGAAGAAATGTCCTTAGAAAGGAGCCGATGAGTAAAGATGTTGGTGAGGATGACGCTTTCTCTGTTAATGACAAGTTCAGTAGTAAACTATACAAGGTTAAAATAGGAACTGTAGTTGCACAAAAGGAATCCGAACCTGAGAAACAGGAAACTCGGCAGCGAGTGGAGGAGGACAGGAAGCCTCAGATTGAGGCGGCGATAGTGAGGATCATGAAATCTAGGAAGCAACTTGATCATAACAATCTTATAGCTGAAGTCACAAAGCAGTTGCAGTCACGTTTCCTTGCAAATCCAACAGAGGTCAAGAAACGCATTGAGTCTCTCATTGAGCGAGACTTTTTGGAGAGGGATGATAACGACAGAAAAATGTATCGGTATCTTGCATAG

Protein sequence

>MS.gene055864.t1

MVLHKFGDRLYSGLVATMTAHLKEIAKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTFIPSAKKTPVHELGLNLWKENVIYSNQIRTRLLNTLLELVHSERTGEVIDRGIMRNITKMLMDLGPSVYAQEFETHFLQVSAEFYQVESQRFIECCDCGDYLKKAERRLNEEMDRVSHYMDPETEKKINKVVETQMIENHMLRLIHMENSGLVNMLCDDKYEDLGRMYNLFRRVTDGLLKIREVMTSHIRESGKQLVTDPERLKDPVEFVQRLLDEKDKYDKIINLAFNNDKSFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVNEDDVEVTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASHPDLGDGPTLTVQVLTTGSWPTQSSITCNLPVEISALCEKFRSYYLGTHTGRRLSWQTNMGFADLKATFGKGQKHELNVSTYQMCVLMLFNNADKLSYKEIEQATEIPAPDLKRCLQSLALVKGRNVLRKEPMSKDVGEDDAFSVNDKFSSKLYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIERDFLERDDNDRKMYRYLA