Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38707.t1 | XP_003603058.1 | 96 | 373 | 14 | 1 | 1 | 372 | 1 | 373 | 4.40E-207 | 730.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38707.t1 | Q9C635 | 50.4 | 389 | 133 | 11 | 1 | 371 | 1 | 347 | 5.6e-78 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38707.t1 | G7J6F2 | 96.0 | 373 | 14 | 1 | 1 | 372 | 1 | 373 | 3.2e-207 | 730.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38707.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053348 | MS.gene38707 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene058128 | MS.gene38707 | 0.820518 | 6.57E-53 | -1.69E-46 |
| MS.gene058853 | MS.gene38707 | 0.810539 | 1.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38707.t1 | MTR_3g101870 | 95.979 | 373 | 14 | 1 | 1 | 372 | 1 | 373 | 0.0 | 741 |
| MS.gene38707.t1 | MTR_5g089170 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 2.06e-87 | 265 |
| MS.gene38707.t1 | MTR_5g010680 | 43.542 | 271 | 129 | 6 | 1 | 269 | 1 | 249 | 6.33e-59 | 195 |
| MS.gene38707.t1 | MTR_0020s0020 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 3.75e-55 | 184 |
| MS.gene38707.t1 | MTR_5g017470 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 5.88e-51 | 172 |
| MS.gene38707.t1 | MTR_1g100777 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 8.55e-51 | 172 |
| MS.gene38707.t1 | MTR_7g091370 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.69e-47 | 161 |
| MS.gene38707.t1 | MTR_6g043060 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 3.30e-46 | 161 |
| MS.gene38707.t1 | MTR_5g029680 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 3.34e-44 | 159 |
| MS.gene38707.t1 | MTR_7g095680 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 4.14e-43 | 154 |
| MS.gene38707.t1 | MTR_8g083100 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.95e-41 | 152 |
| MS.gene38707.t1 | MTR_1g102860 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 1.02e-40 | 146 |
| MS.gene38707.t1 | MTR_1g061170 | 66.667 | 99 | 33 | 0 | 24 | 122 | 49 | 147 | 9.91e-40 | 147 |
| MS.gene38707.t1 | MTR_8g087540 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 2.27e-39 | 144 |
| MS.gene38707.t1 | MTR_4g077970 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 1.15e-38 | 144 |
| MS.gene38707.t1 | MTR_1g071360 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 4.63e-38 | 139 |
| MS.gene38707.t1 | MTR_2g100680 | 65.957 | 94 | 32 | 0 | 22 | 115 | 29 | 122 | 6.93e-38 | 141 |
| MS.gene38707.t1 | MTR_1g071360 | 64.078 | 103 | 36 | 1 | 22 | 123 | 27 | 129 | 8.36e-38 | 139 |
| MS.gene38707.t1 | MTR_6g086805 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 1.34e-36 | 135 |
| MS.gene38707.t1 | MTR_3g104550 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 2.22e-36 | 136 |
| MS.gene38707.t1 | MTR_2g100670 | 65.957 | 94 | 32 | 0 | 22 | 115 | 31 | 124 | 2.23e-36 | 134 |
| MS.gene38707.t1 | MTR_2g017890 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 6.39e-36 | 135 |
| MS.gene38707.t1 | MTR_2g100670 | 65.957 | 94 | 32 | 0 | 22 | 115 | 139 | 232 | 2.37e-35 | 134 |
| MS.gene38707.t1 | MTR_4g088900 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 1.94e-34 | 126 |
| MS.gene38707.t1 | MTR_8g105780 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 5.57e-33 | 127 |
| MS.gene38707.t1 | MTR_4g045757 | 56.923 | 65 | 28 | 0 | 17 | 81 | 7 | 71 | 1.75e-18 | 79.7 |
| MS.gene38707.t1 | MTR_5g047190 | 40.217 | 92 | 48 | 2 | 32 | 116 | 1 | 92 | 2.85e-15 | 71.2 |
| MS.gene38707.t1 | MTR_4g011850 | 87.879 | 33 | 4 | 0 | 84 | 116 | 9 | 41 | 6.26e-15 | 71.6 |
| MS.gene38707.t1 | MTR_4g011850 | 78.378 | 37 | 8 | 0 | 193 | 229 | 63 | 99 | 5.97e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38707.t1 | AT1G46264 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.63e-120 | 352 |
| MS.gene38707.t1 | AT4G11660 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.76e-60 | 197 |
| MS.gene38707.t1 | AT5G62020 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.16e-58 | 191 |
| MS.gene38707.t1 | AT4G36990 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.88e-54 | 179 |
| MS.gene38707.t1 | AT1G32330 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.10e-45 | 163 |
| MS.gene38707.t1 | AT1G32330 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.13e-45 | 163 |
| MS.gene38707.t1 | AT2G41690 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.25e-45 | 155 |
| MS.gene38707.t1 | AT4G17750 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.91e-45 | 162 |
| MS.gene38707.t1 | AT3G22830 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.23e-42 | 152 |
| MS.gene38707.t1 | AT3G02990 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.36e-40 | 149 |
| MS.gene38707.t1 | AT5G03720 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 3.35e-40 | 147 |
| MS.gene38707.t1 | AT5G03720 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 3.35e-40 | 147 |
| MS.gene38707.t1 | AT5G16820 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.46e-39 | 147 |
| MS.gene38707.t1 | AT5G16820 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.46e-39 | 147 |
| MS.gene38707.t1 | AT5G43840 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.76e-39 | 141 |
| MS.gene38707.t1 | AT2G26150 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 2.03e-38 | 140 |
| MS.gene38707.t1 | AT2G26150 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 2.03e-38 | 140 |
| MS.gene38707.t1 | AT3G24520 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 5.84e-38 | 139 |
| MS.gene38707.t1 | AT4G13980 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.10e-37 | 141 |
| MS.gene38707.t1 | AT3G51910 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 3.26e-37 | 135 |
| MS.gene38707.t1 | AT3G63350 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.14e-35 | 132 |
| MS.gene38707.t1 | AT5G54070 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.06e-34 | 129 |
| MS.gene38707.t1 | AT4G18880 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.80e-31 | 123 |
| MS.gene38707.t1 | AT1G67970 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.98e-31 | 121 |
| MS.gene38707.t1 | AT5G45710 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 3.21e-30 | 119 |
| MS.gene38707.t1 | AT5G45710 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 3.21e-30 | 119 |
| MS.gene38707.t1 | AT4G18870 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.27e-20 | 91.3 |
| MS.gene38707.t1 | AT4G18870 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.55e-16 | 78.6 |
| MS.gene38707.t1 | AT1G77570 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.37e-12 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3.3:+84309822 | None:intergenic |
| AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3.3:-84309805 | MS.gene38707:CDS |
| GGATTATTAGATCCACATTC+AGG | 0.261808 | 3.3:+84309843 | None:intergenic |
| TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3.3:+84310017 | None:intergenic |
| CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3.3:+84310425 | None:intergenic |
| AAGCCAATGAACCTGCTTTC+GGG | 0.275559 | 3.3:-84310056 | MS.gene38707:CDS |
| ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3.3:+84310925 | None:intergenic |
| TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3.3:-84310341 | MS.gene38707:CDS |
| TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3.3:+84310344 | None:intergenic |
| AAAGCCAATGAACCTGCTTT+CGG | 0.315104 | 3.3:-84310057 | MS.gene38707:CDS |
| TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3.3:+84310812 | None:intergenic |
| ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3.3:-84309832 | MS.gene38707:CDS |
| AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3.3:+84310836 | None:intergenic |
| ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3.3:-84310865 | MS.gene38707:CDS |
| TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3.3:+84310311 | None:intergenic |
| TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3.3:+84310813 | None:intergenic |
| CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3.3:-84310894 | MS.gene38707:CDS |
| GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3.3:-84309811 | MS.gene38707:CDS |
| GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3.3:+84309954 | None:intergenic |
| GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3.3:+84310018 | None:intergenic |
| TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3.3:+84310155 | None:intergenic |
| ACATTACCACCACCATTCAT+AGG | 0.425778 | 3.3:+84310092 | None:intergenic |
| TAGCCCGAAAGCAGGTTCAT+TGG | 0.431377 | 3.3:+84310053 | None:intergenic |
| CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3.3:-84310895 | MS.gene38707:CDS |
| TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3.3:+84310391 | None:intergenic |
| CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3.3:+84310098 | None:intergenic |
| CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3.3:-84310379 | MS.gene38707:CDS |
| AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3.3:-84309936 | MS.gene38707:CDS |
| ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3.3:-84310500 | MS.gene38707:CDS |
| GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3.3:+84310146 | None:intergenic |
| TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3.3:+84310578 | None:intergenic |
| GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3.3:+84310440 | None:intergenic |
| GATTATTAGATCCACATTCA+GGG | 0.505417 | 3.3:+84309844 | None:intergenic |
| GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3.3:+84310459 | None:intergenic |
| TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3.3:+84310816 | None:intergenic |
| TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3.3:+84310395 | None:intergenic |
| GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3.3:-84310589 | MS.gene38707:CDS |
| GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3.3:+84310819 | None:intergenic |
| TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3.3:-84310104 | MS.gene38707:CDS |
| AATTGTAATAGCCCGAAAGC+AGG | 0.542396 | 3.3:+84310045 | None:intergenic |
| TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3.3:+84310437 | None:intergenic |
| TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3.3:-84310084 | MS.gene38707:CDS |
| ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3.3:-84310338 | MS.gene38707:CDS |
| CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3.3:-84309993 | MS.gene38707:CDS |
| AGTTCACATTCATACCATGA+TGG | 0.552494 | 3.3:+84309979 | None:intergenic |
| ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3.3:+84310491 | None:intergenic |
| AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3.3:-84309855 | MS.gene38707:CDS |
| ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3.3:+84310347 | None:intergenic |
| GTTCACATTCATACCATGAT+GGG | 0.572426 | 3.3:+84309980 | None:intergenic |
| CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3.3:-84310098 | MS.gene38707:CDS |
| AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3.3:-84310588 | MS.gene38707:CDS |
| GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3.3:-84309935 | MS.gene38707:CDS |
| GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3.3:+84310113 | None:intergenic |
| AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3.3:+84309741 | None:intergenic |
| TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3.3:+84310915 | None:intergenic |
| ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3.3:-84310893 | MS.gene38707:CDS |
| ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3.3:-84309943 | MS.gene38707:CDS |
| GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3.3:+84310899 | None:intergenic |
| AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3.3:-84309820 | MS.gene38707:CDS |
| AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3.3:+84310859 | None:intergenic |
| AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3.3:-84310101 | MS.gene38707:CDS |
| ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3.3:+84309744 | None:intergenic |
| CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3.3:-84310998 | MS.gene38707:CDS |
| AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3.3:+84310839 | None:intergenic |
| TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3.3:+84310856 | None:intergenic |
| CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3.3:+84310895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3.3:84310136-84310155 | MS.gene38707:CDS | 10.0% |
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3.3:84310135-84310154 | MS.gene38707:CDS | 10.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3.3:84310921-84310940 | MS.gene38707:CDS | 20.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3.3:84310193-84310212 | MS.gene38707:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3.3:84310412-84310431 | None:intergenic | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3.3:84310972-84310991 | MS.gene38707:CDS | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3.3:84310973-84310992 | MS.gene38707:CDS | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3.3:84310412-84310431 | MS.gene38707:CDS | 20.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3.3:84310933-84310952 | MS.gene38707:CDS | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3.3:84310934-84310953 | None:intergenic | 25.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3.3:84310319-84310338 | None:intergenic | 25.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3.3:84310409-84310428 | None:intergenic | 30.0% | |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3.3:84310810-84310829 | MS.gene38707:CDS | 30.0% | |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3.3:84310331-84310350 | None:intergenic | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3.3:84310912-84310931 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3.3:84310415-84310434 | MS.gene38707:CDS | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3.3:84309943-84309962 | None:intergenic | 30.0% |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3.3:84310365-84310384 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3.3:84309944-84309963 | None:intergenic | 30.0% |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3.3:84309831-84309850 | None:intergenic | 30.0% |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3.3:84310165-84310184 | MS.gene38707:CDS | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3.3:84310817-84310836 | MS.gene38707:CDS | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3.3:84310777-84310796 | None:intergenic | 35.0% | |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3.3:84310316-84310335 | None:intergenic | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3.3:84310738-84310757 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3.3:84309996-84310015 | None:intergenic | 35.0% | |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3.3:84310610-84310629 | None:intergenic | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3.3:84310818-84310837 | MS.gene38707:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3.3:84310913-84310932 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3.3:84310776-84310795 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3.3:84310649-84310668 | MS.gene38707:intron | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3.3:84310739-84310758 | None:intergenic | 35.0% | |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3.3:84310445-84310464 | None:intergenic | 35.0% |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3.3:84310361-84310380 | None:intergenic | 35.0% |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3.3:84310265-84310284 | None:intergenic | 35.0% |
| AAAGCCAATGAACCTGCTTT+CGG | - | chr3.3:84310696-84310715 | MS.gene38707:intron | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3.3:84310652-84310671 | MS.gene38707:intron | 40.0% | |
| AATTGTAATAGCCCGAAAGC+AGG | + | chr3.3:84310711-84310730 | None:intergenic | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3.3:84310664-84310683 | None:intergenic | 40.0% | |
| CCACAAAATCAATCCCATCA+TGG | - | chr3.3:84310760-84310779 | MS.gene38707:intron | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3.3:84310374-84310393 | MS.gene38707:CDS | 40.0% | |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3.3:84309755-84309774 | MS.gene38707:CDS | 40.0% | |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3.3:84310164-84310183 | MS.gene38707:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3.3:84310802-84310821 | None:intergenic | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3.3:84310601-84310620 | None:intergenic | 40.0% | |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3.3:84309841-84309860 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3.3:84310856-84310875 | MS.gene38707:CDS | 40.0% |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3.3:84309940-84309959 | None:intergenic | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3.3:84310948-84310967 | MS.gene38707:CDS | 40.0% |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3.3:84310763-84310782 | None:intergenic | 40.0% |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3.3:84310669-84310688 | MS.gene38707:intron | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3.3:84309826-84309845 | None:intergenic | 40.0% |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3.3:84309821-84309840 | None:intergenic | 40.0% |
| AAGCCAATGAACCTGCTTTC+GGG | - | chr3.3:84310697-84310716 | MS.gene38707:intron | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3.3:84309860-84309879 | MS.gene38707:CDS | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3.3:84310253-84310272 | MS.gene38707:CDS | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3.3:84309920-84309939 | None:intergenic | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3.3:84309917-84309936 | None:intergenic | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3.3:84309888-84309907 | MS.gene38707:CDS | 45.0% | |
| CACAGATCACATCGTCTCTT+GGG | - | chr3.3:84309859-84309878 | MS.gene38707:CDS | 45.0% | |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3.3:84310942-84310961 | MS.gene38707:CDS | 45.0% | |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3.3:84310065-84310084 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3.3:84310178-84310197 | None:intergenic | 45.0% | |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3.3:84310898-84310917 | MS.gene38707:CDS | 45.0% |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3.3:84310643-84310662 | None:intergenic | 45.0% |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3.3:84309937-84309956 | None:intergenic | 45.0% |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3.3:84310896-84310915 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3.3:84309814-84309833 | None:intergenic | 45.0% |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3.3:84310655-84310674 | MS.gene38707:intron | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3.3:84309861-84309880 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3.3:84309858-84309877 | MS.gene38707:CDS | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3.3:84310658-84310677 | None:intergenic | 50.0% | |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3.3:84309857-84309876 | None:intergenic | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3.3:84310297-84310316 | None:intergenic | 50.0% | |
| TAGCCCGAAAGCAGGTTCAT+TGG | + | chr3.3:84310703-84310722 | None:intergenic | 50.0% | |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3.3:84309815-84309834 | None:intergenic | 50.0% |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3.3:84309897-84309916 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3.3:84309900-84309919 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84309749 | 84311026 | 84309749 | ID=MS.gene38707 |
| chr3.3 | mRNA | 84309749 | 84311026 | 84309749 | ID=MS.gene38707.t1;Parent=MS.gene38707 |
| chr3.3 | exon | 84310778 | 84311026 | 84310778 | ID=MS.gene38707.t1.exon1;Parent=MS.gene38707.t1 |
| chr3.3 | CDS | 84310778 | 84311026 | 84310778 | ID=cds.MS.gene38707.t1;Parent=MS.gene38707.t1 |
| chr3.3 | exon | 84309749 | 84310618 | 84309749 | ID=MS.gene38707.t1.exon2;Parent=MS.gene38707.t1 |
| chr3.3 | CDS | 84309749 | 84310618 | 84309749 | ID=cds.MS.gene38707.t1;Parent=MS.gene38707.t1 |
| Gene Sequence |
| Protein sequence |
