Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38736.t1 | XP_003603015.1 | 96.6 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 1.80E-225 | 791.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38736.t1 | O48723 | 63.9 | 402 | 141 | 2 | 1 | 402 | 3 | 400 | 4.5e-145 | 515.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38736.t1 | G7J6A9 | 96.6 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 1.3e-225 | 791.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054623 | MS.gene38736 | 0.907076 | 7.49E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38736.t1 | MTR_3g101410 | 96.577 | 409 | 13 | 1 | 1 | 408 | 1 | 409 | 0.0 | 818 |
| MS.gene38736.t1 | MTR_3g101400 | 91.176 | 408 | 36 | 0 | 1 | 408 | 1 | 408 | 0.0 | 753 |
| MS.gene38736.t1 | MTR_1g019940 | 78.272 | 405 | 86 | 2 | 4 | 406 | 5 | 409 | 0.0 | 674 |
| MS.gene38736.t1 | MTR_1g019940 | 78.025 | 405 | 85 | 3 | 4 | 406 | 5 | 407 | 0.0 | 666 |
| MS.gene38736.t1 | MTR_1g019940 | 78.276 | 290 | 62 | 1 | 118 | 406 | 1 | 290 | 3.58e-175 | 491 |
| MS.gene38736.t1 | MTR_5g017670 | 54.523 | 398 | 173 | 4 | 4 | 399 | 3 | 394 | 6.85e-156 | 446 |
| MS.gene38736.t1 | MTR_5g017680 | 55.614 | 383 | 166 | 3 | 18 | 397 | 8 | 389 | 2.24e-155 | 444 |
| MS.gene38736.t1 | MTR_8g007040 | 44.472 | 398 | 188 | 11 | 10 | 396 | 22 | 397 | 4.11e-102 | 310 |
| MS.gene38736.t1 | MTR_8g007095 | 43.687 | 396 | 194 | 11 | 10 | 396 | 22 | 397 | 4.44e-99 | 302 |
| MS.gene38736.t1 | MTR_8g007090 | 43.434 | 396 | 195 | 11 | 10 | 396 | 22 | 397 | 4.79e-98 | 299 |
| MS.gene38736.t1 | MTR_8g007140 | 47.044 | 389 | 176 | 7 | 10 | 396 | 23 | 383 | 5.46e-97 | 296 |
| MS.gene38736.t1 | MTR_8g007065 | 40.712 | 393 | 208 | 10 | 10 | 396 | 22 | 395 | 5.60e-85 | 265 |
| MS.gene38736.t1 | MTR_8g007125 | 42.386 | 394 | 198 | 10 | 10 | 396 | 22 | 393 | 7.45e-85 | 265 |
| MS.gene38736.t1 | MTR_1g095165 | 30.203 | 394 | 241 | 12 | 20 | 399 | 75 | 448 | 1.68e-43 | 158 |
| MS.gene38736.t1 | MTR_7g094940 | 28.269 | 283 | 184 | 8 | 22 | 299 | 32 | 300 | 1.02e-27 | 113 |
| MS.gene38736.t1 | MTR_1g072190 | 26.377 | 345 | 207 | 11 | 22 | 355 | 32 | 340 | 2.98e-27 | 112 |
| MS.gene38736.t1 | MTR_2g029510 | 28.756 | 386 | 216 | 18 | 20 | 397 | 69 | 403 | 3.15e-23 | 101 |
| MS.gene38736.t1 | MTR_0368s0010 | 27.481 | 262 | 166 | 10 | 142 | 399 | 43 | 284 | 2.86e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38736.t1 | AT2G26560 | 63.772 | 403 | 142 | 2 | 1 | 403 | 3 | 401 | 0.0 | 529 |
| MS.gene38736.t1 | AT4G37070 | 59.126 | 389 | 159 | 0 | 12 | 400 | 11 | 399 | 8.72e-170 | 481 |
| MS.gene38736.t1 | AT4G37060 | 57.252 | 393 | 168 | 0 | 13 | 405 | 12 | 404 | 3.15e-165 | 470 |
| MS.gene38736.t1 | AT4G37050 | 58.578 | 408 | 157 | 3 | 2 | 401 | 21 | 424 | 1.35e-164 | 469 |
| MS.gene38736.t1 | AT4G37070 | 58.713 | 373 | 154 | 0 | 12 | 384 | 11 | 383 | 1.03e-160 | 457 |
| MS.gene38736.t1 | AT4G37070 | 58.713 | 373 | 154 | 0 | 12 | 384 | 11 | 383 | 1.03e-160 | 457 |
| MS.gene38736.t1 | AT4G37060 | 53.066 | 424 | 168 | 1 | 13 | 405 | 12 | 435 | 2.02e-158 | 454 |
| MS.gene38736.t1 | AT4G37070 | 56.568 | 373 | 151 | 1 | 12 | 384 | 11 | 372 | 1.82e-151 | 433 |
| MS.gene38736.t1 | AT5G43590 | 53.728 | 389 | 169 | 5 | 12 | 396 | 6 | 387 | 4.42e-128 | 375 |
| MS.gene38736.t1 | AT5G43590 | 53.728 | 389 | 169 | 5 | 12 | 396 | 73 | 454 | 4.55e-127 | 375 |
| MS.gene38736.t1 | AT4G29800 | 28.500 | 400 | 249 | 15 | 20 | 403 | 121 | 499 | 1.36e-37 | 143 |
| MS.gene38736.t1 | AT4G29800 | 28.429 | 401 | 249 | 15 | 20 | 403 | 121 | 500 | 1.94e-37 | 142 |
| MS.gene38736.t1 | AT2G39220 | 29.124 | 388 | 243 | 14 | 20 | 399 | 108 | 471 | 2.68e-37 | 142 |
| MS.gene38736.t1 | AT3G54950 | 30.252 | 357 | 215 | 12 | 20 | 369 | 98 | 427 | 4.01e-37 | 141 |
| MS.gene38736.t1 | AT3G63200 | 29.524 | 315 | 190 | 12 | 22 | 330 | 32 | 320 | 2.80e-32 | 126 |
Find 100 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTTGGGAAAGTATTT+TGG | 0.144450 | 3.3:+83988510 | None:intergenic |
| GCATTGATGGTGGCGGTATA+AGG | 0.221210 | 3.3:-83989961 | MS.gene38736:CDS |
| TCAACAATTTGTCACCAATT+TGG | 0.229429 | 3.3:+83988707 | None:intergenic |
| ATGTTTGAGCCAATTGAAAA+TGG | 0.253040 | 3.3:-83988649 | MS.gene38736:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3.3:+83989449 | None:intergenic |
| AGGTATTTCCCATCATATTT+TGG | 0.273356 | 3.3:+83989566 | None:intergenic |
| TTGACTAAACATGTCGATTA+AGG | 0.277813 | 3.3:+83988963 | None:intergenic |
| ATGCGAAAATGGCAGCAAAA+TGG | 0.281352 | 3.3:-83989023 | MS.gene38736:CDS |
| GCTATATTCCATTGGCTTGA+TGG | 0.290285 | 3.3:+83989101 | None:intergenic |
| GGAGAGTGTTCCAAGTAAAA+TGG | 0.292232 | 3.3:+83989752 | None:intergenic |
| TAGTCAATCATCAGCTGATA+TGG | 0.302481 | 3.3:-83988947 | MS.gene38736:CDS |
| CATTGATGGTGGCGGTATAA+GGG | 0.333516 | 3.3:-83989960 | MS.gene38736:CDS |
| TGCGAAAATGGCAGCAAAAT+GGG | 0.333561 | 3.3:-83989022 | MS.gene38736:CDS |
| GATTACTTTGATGTGATTAC+AGG | 0.334035 | 3.3:-83989860 | MS.gene38736:CDS |
| GATGATATTTCAGACTTTAG+TGG | 0.338291 | 3.3:-83989175 | MS.gene38736:intron |
| GTGTGTTGCCTTCTGTATCT+TGG | 0.340354 | 3.3:+83989330 | None:intergenic |
| CACAAACACCGCCATCAATA+AGG | 0.340884 | 3.3:+83989297 | None:intergenic |
| TTGTGTTGTGGAAAGATCTT+AGG | 0.350437 | 3.3:+83989731 | None:intergenic |
| ACAAAAGTTCAATGCGAAAA+TGG | 0.352216 | 3.3:-83989034 | MS.gene38736:CDS |
| CATGAATTCAACCTTATTGA+TGG | 0.370800 | 3.3:-83989308 | MS.gene38736:CDS |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3.3:+83989909 | None:intergenic |
| GCTGCACCTACTTATCTTCC+AGG | 0.379184 | 3.3:-83989368 | MS.gene38736:CDS |
| ACTCGCGGAGCCTCCTCTCT+TGG | 0.386057 | 3.3:+83988497 | None:intergenic |
| GGCAGCAAAATGGGGTCTGC+TGG | 0.394148 | 3.3:-83989013 | MS.gene38736:CDS |
| TGAAGTGGTAAGGGAGAAGT+TGG | 0.397346 | 3.3:-83989540 | MS.gene38736:CDS |
| GAACTCATGCAGGGACTTGT+TGG | 0.403597 | 3.3:-83989624 | MS.gene38736:intron |
| GTTGAAGAAACCAGTCTCTA+AGG | 0.407068 | 3.3:-83988689 | MS.gene38736:CDS |
| CAAAATGGGGTCTGCTGGAT+TGG | 0.411164 | 3.3:-83989008 | MS.gene38736:CDS |
| TGTTTGAGCCAATTGAAAAT+GGG | 0.414266 | 3.3:-83988648 | MS.gene38736:CDS |
| CAGATTCAGCCTCCCACCTA+TGG | 0.421293 | 3.3:-83990004 | MS.gene38736:CDS |
| CTCGCGGAGCCTCCTCTCTT+GGG | 0.424985 | 3.3:+83988498 | None:intergenic |
| AACTCATGCAGGGACTTGTT+GGG | 0.426138 | 3.3:-83989623 | MS.gene38736:intron |
| GAAGTGGTAAGGGAGAAGTT+GGG | 0.431386 | 3.3:-83989539 | MS.gene38736:CDS |
| GTGACTATACTAAGCATTGA+TGG | 0.439641 | 3.3:-83989974 | MS.gene38736:CDS |
| TTGATAATCTCACTGGGCAC+TGG | 0.445741 | 3.3:-83989072 | MS.gene38736:CDS |
| CCGTTTCTTGATAATCTCAC+TGG | 0.457904 | 3.3:-83989079 | MS.gene38736:CDS |
| TCGCAACTTCAAGAATTAGA+TGG | 0.459099 | 3.3:-83989902 | MS.gene38736:CDS |
| ACATAATTACCTACGGATAC+AGG | 0.468841 | 3.3:-83988881 | MS.gene38736:intron |
| CAGGGACTTGTTGGGATCAG+TGG | 0.475838 | 3.3:-83989615 | MS.gene38736:CDS |
| AGGAACTCGAGGATAGTTGC+GGG | 0.480109 | 3.3:+83989929 | None:intergenic |
| TGACTAAACATGTCGATTAA+GGG | 0.483825 | 3.3:+83988964 | None:intergenic |
| AATACCTTCATGAAGTGGTA+AGG | 0.488193 | 3.3:-83989550 | MS.gene38736:CDS |
| CGGTGTTTGTGCAAATAATC+CGG | 0.488784 | 3.3:-83989285 | MS.gene38736:intron |
| TCTAAGGTCAATTTAGAGAA+TGG | 0.490927 | 3.3:-83988673 | MS.gene38736:CDS |
| AAGTGGTAAGGGAGAAGTTG+GGG | 0.499535 | 3.3:-83989538 | MS.gene38736:CDS |
| TTAAAGCTTTATTAGTGTGA+GGG | 0.500043 | 3.3:+83988467 | None:intergenic |
| CCAAAATACTTTCCCAAGAG+AGG | 0.501656 | 3.3:-83988510 | MS.gene38736:CDS |
| AGGGACTTGTTGGGATCAGT+GGG | 0.501975 | 3.3:-83989614 | MS.gene38736:CDS |
| CCAACCAAGATGCTCTCAAA+AGG | 0.502859 | 3.3:-83988621 | MS.gene38736:intron |
| TCTAAATTGACCTTAGAGAC+TGG | 0.503415 | 3.3:+83988679 | None:intergenic |
| TTGTAGCCTGGAAGATAAGT+AGG | 0.509381 | 3.3:+83989362 | None:intergenic |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3.3:-83989411 | MS.gene38736:CDS |
| CTCGAGTGACGGCAGCAAGA+TGG | 0.516447 | 3.3:+83988917 | None:intergenic |
| GATCAAGAAAACTCCTTGCA+TGG | 0.518456 | 3.3:-83989426 | MS.gene38736:CDS |
| TTAGCAGGACCAAAATATGA+TGG | 0.523003 | 3.3:-83989575 | MS.gene38736:CDS |
| AAGAAACGGCTATATTCCAT+TGG | 0.541585 | 3.3:+83989093 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.542739 | 3.3:+83989991 | None:intergenic |
| TGGTTCTTGAAATTGTAGCC+TGG | 0.542827 | 3.3:+83989350 | None:intergenic |
| TATAGTCACTAAGTTTCCAT+AGG | 0.546556 | 3.3:+83989988 | None:intergenic |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3.3:+83989992 | None:intergenic |
| AGATATTCGTACTTGTGTTG+TGG | 0.552016 | 3.3:+83989719 | None:intergenic |
| CCAGTGAGATTATCAAGAAA+CGG | 0.553943 | 3.3:+83989079 | None:intergenic |
| TGTGATTACAGGAACAAGTA+CGG | 0.557423 | 3.3:-83989849 | MS.gene38736:CDS |
| TTTCTATTCCATCAAGCCAA+TGG | 0.557726 | 3.3:-83989109 | MS.gene38736:CDS |
| ATTAAAGCTTTATTAGTGTG+AGG | 0.557747 | 3.3:+83988466 | None:intergenic |
| ATTCACAACATAATTACCTA+CGG | 0.562378 | 3.3:-83988888 | MS.gene38736:CDS |
| TAAAGCTTTATTAGTGTGAG+GGG | 0.564782 | 3.3:+83988468 | None:intergenic |
| CGTTTCTTGATAATCTCACT+GGG | 0.566181 | 3.3:-83989078 | MS.gene38736:CDS |
| GCGAAAATGGCAGCAAAATG+GGG | 0.566216 | 3.3:-83989021 | MS.gene38736:CDS |
| AAATTGTTCAGATCATTAGC+AGG | 0.566843 | 3.3:-83989590 | MS.gene38736:CDS |
| AATGCAGGATGATACATTGA+CGG | 0.567386 | 3.3:-83988782 | MS.gene38736:intron |
| AATTAGATGGTGAATCTGCT+AGG | 0.567945 | 3.3:-83989889 | MS.gene38736:CDS |
| ATTGATGGTGGCGGTATAAG+GGG | 0.574647 | 3.3:-83989959 | MS.gene38736:CDS |
| TAGCAGGACCAAAATATGAT+GGG | 0.575443 | 3.3:-83989574 | MS.gene38736:CDS |
| TCTCCCTTACCACTTCATGA+AGG | 0.576054 | 3.3:+83989546 | None:intergenic |
| AAGATAAGTAGGTGCAGCAG+AGG | 0.577597 | 3.3:+83989373 | None:intergenic |
| TGAATTAAGTGCTCGAGTGA+CGG | 0.577920 | 3.3:+83988906 | None:intergenic |
| GTTTGAGCCAATTGAAAATG+GGG | 0.578259 | 3.3:-83988647 | MS.gene38736:CDS |
| ATACCTTCATGAAGTGGTAA+GGG | 0.581117 | 3.3:-83989549 | MS.gene38736:CDS |
| GTGATTACAGGAACAAGTAC+GGG | 0.582488 | 3.3:-83989848 | MS.gene38736:CDS |
| CTGCTGGATTGGTTAACTCA+CGG | 0.586370 | 3.3:-83988997 | MS.gene38736:CDS |
| ATGCAGGATGATACATTGAC+GGG | 0.587863 | 3.3:-83988781 | MS.gene38736:intron |
| TGGTGAATCTGCTAGGCTTG+CGG | 0.599282 | 3.3:-83989882 | MS.gene38736:CDS |
| TGGGAAATACCTTCATGAAG+TGG | 0.608258 | 3.3:-83989555 | MS.gene38736:CDS |
| AAGGAACTCGAGGATAGTTG+CGG | 0.612182 | 3.3:+83989928 | None:intergenic |
| ATACTAAGCATTGATGGTGG+CGG | 0.616430 | 3.3:-83989968 | MS.gene38736:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.625469 | 3.3:+83989413 | None:intergenic |
| TTCAAGAACCAAGATACAGA+AGG | 0.625819 | 3.3:-83989338 | MS.gene38736:CDS |
| GTTGCGATTCAAGGAACTCG+AGG | 0.637528 | 3.3:+83989918 | None:intergenic |
| AAATGTGGGAATCACAATGT+TGG | 0.650439 | 3.3:+83989490 | None:intergenic |
| AGTGGTAAGGGAGAAGTTGG+GGG | 0.653344 | 3.3:-83989537 | MS.gene38736:CDS |
| AAATACTTTCCCAAGAGAGG+AGG | 0.658189 | 3.3:-83988507 | MS.gene38736:CDS |
| ATAATTGTACCTGTATCCGT+AGG | 0.659663 | 3.3:+83988872 | None:intergenic |
| GAATTCAACCTTATTGATGG+CGG | 0.688975 | 3.3:-83989305 | MS.gene38736:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3.3:+83989995 | None:intergenic |
| TGTGAGGGGATTTCAACTCG+CGG | 0.697585 | 3.3:+83988482 | None:intergenic |
| ATTACAGGAACAAGTACGGG+TGG | 0.711093 | 3.3:-83989845 | MS.gene38736:CDS |
| ACTATACTAAGCATTGATGG+TGG | 0.712098 | 3.3:-83989971 | MS.gene38736:CDS |
| CTGGATTGGTTAACTCACGG+TGG | 0.721558 | 3.3:-83988994 | MS.gene38736:CDS |
| GGGACTTGTTGGGATCAGTG+GGG | 0.764722 | 3.3:-83989613 | MS.gene38736:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATAGTATATATAC+CGG | + | chr3.3:83989230-83989249 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTTACAAAATGT+CGG | + | chr3.3:83988830-83988849 | None:intergenic | 10.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | + | chr3.3:83989047-83989066 | None:intergenic | 15.0% |
| !! | TAATTGTGTATTAAAAATGC+AGG | - | chr3.3:83989696-83989715 | MS.gene38736:intron | 20.0% |
| !! | TTAGTCATTTAATCACATAA+TGG | + | chr3.3:83989936-83989955 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATGTCAAATGT+GGG | + | chr3.3:83989020-83989039 | None:intergenic | 20.0% |
| !!! | TTTTTCTAAATTCTCTTTTG+TGG | + | chr3.3:83989761-83989780 | None:intergenic | 20.0% |
| ! | ATAAATATTTGAACTCATGC+AGG | - | chr3.3:83988859-83988878 | MS.gene38736:intron | 25.0% |
| ! | ATTAGTAGTGTTTACATATG+TGG | + | chr3.3:83989655-83989674 | None:intergenic | 25.0% |
| ! | ATTCACAACATAATTACCTA+CGG | - | chr3.3:83989605-83989624 | MS.gene38736:CDS | 25.0% |
| ! | TAAATATTTGAACTCATGCA+GGG | - | chr3.3:83988860-83988879 | MS.gene38736:intron | 25.0% |
| ! | TTAGAAAAACTTTGCCAAAT+TGG | - | chr3.3:83989772-83989791 | MS.gene38736:CDS | 25.0% |
| ! | TTAGTAGTGTTTACATATGT+GGG | + | chr3.3:83989654-83989673 | None:intergenic | 25.0% |
| !! | ATTGAACTTTTGTTCATTCT+TGG | + | chr3.3:83989452-83989471 | None:intergenic | 25.0% |
| !! | TTGAACTTTTGTTCATTCTT+GGG | + | chr3.3:83989451-83989470 | None:intergenic | 25.0% |
| !!! | ACATTTGTTTTAATCTTTGC+AGG | - | chr3.3:83989956-83989975 | MS.gene38736:CDS | 25.0% |
| !!! | ATTAAAGCTTTATTAGTGTG+AGG | + | chr3.3:83990030-83990049 | None:intergenic | 25.0% |
| !!! | ATTGAATAACCAGTTGTTTT+TGG | - | chr3.3:83989247-83989266 | MS.gene38736:intron | 25.0% |
| !!! | CATTGTTTTTATGTCAAATG+TGG | + | chr3.3:83989021-83989040 | None:intergenic | 25.0% |
| !!! | TTAAAGCTTTATTAGTGTGA+GGG | + | chr3.3:83990029-83990048 | None:intergenic | 25.0% |
| AAATTGTTCAGATCATTAGC+AGG | - | chr3.3:83988903-83988922 | MS.gene38736:CDS | 30.0% | |
| ACAAAAGTTCAATGCGAAAA+TGG | - | chr3.3:83989459-83989478 | MS.gene38736:CDS | 30.0% | |
| ATGTTTGAGCCAATTGAAAA+TGG | - | chr3.3:83989844-83989863 | MS.gene38736:CDS | 30.0% | |
| CATGAATTCAACCTTATTGA+TGG | - | chr3.3:83989185-83989204 | MS.gene38736:intron | 30.0% | |
| GATGATATTTCAGACTTTAG+TGG | - | chr3.3:83989318-83989337 | MS.gene38736:CDS | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | - | chr3.3:83988633-83988652 | MS.gene38736:CDS | 30.0% | |
| TAGTAGTGTTTACATATGTG+GGG | + | chr3.3:83989653-83989672 | None:intergenic | 30.0% | |
| TATAGTCACTAAGTTTCCAT+AGG | + | chr3.3:83988508-83988527 | None:intergenic | 30.0% | |
| TCAACAATTTGTCACCAATT+TGG | + | chr3.3:83989789-83989808 | None:intergenic | 30.0% | |
| TGTTTGAGCCAATTGAAAAT+GGG | - | chr3.3:83989845-83989864 | MS.gene38736:CDS | 30.0% | |
| ! | AGGTATTTCCCATCATATTT+TGG | + | chr3.3:83988930-83988949 | None:intergenic | 30.0% |
| ! | GGATATCAAACCATTTTACT+TGG | - | chr3.3:83988731-83988750 | MS.gene38736:CDS | 30.0% |
| ! | GTTTGATTTCCAAAAACAAC+TGG | + | chr3.3:83989259-83989278 | None:intergenic | 30.0% |
| ! | TCTAAGGTCAATTTAGAGAA+TGG | - | chr3.3:83989820-83989839 | MS.gene38736:CDS | 30.0% |
| ! | TGACTAAACATGTCGATTAA+GGG | + | chr3.3:83989532-83989551 | None:intergenic | 30.0% |
| ! | TTGACTAAACATGTCGATTA+AGG | + | chr3.3:83989533-83989552 | None:intergenic | 30.0% |
| !! | TAAAGCTTTATTAGTGTGAG+GGG | + | chr3.3:83990028-83990047 | None:intergenic | 30.0% |
| AAATGTGGGAATCACAATGT+TGG | + | chr3.3:83989006-83989025 | None:intergenic | 35.0% | |
| AAGAAACGGCTATATTCCAT+TGG | + | chr3.3:83989403-83989422 | None:intergenic | 35.0% | |
| AATACCTTCATGAAGTGGTA+AGG | - | chr3.3:83988943-83988962 | MS.gene38736:CDS | 35.0% | |
| AATGCAGGATGATACATTGA+CGG | - | chr3.3:83989711-83989730 | MS.gene38736:intron | 35.0% | |
| AATTAGATGGTGAATCTGCT+AGG | - | chr3.3:83988604-83988623 | MS.gene38736:intron | 35.0% | |
| ACATAATTACCTACGGATAC+AGG | - | chr3.3:83989612-83989631 | MS.gene38736:CDS | 35.0% | |
| AGATATTCGTACTTGTGTTG+TGG | + | chr3.3:83988777-83988796 | None:intergenic | 35.0% | |
| ATAATTGTACCTGTATCCGT+AGG | + | chr3.3:83989624-83989643 | None:intergenic | 35.0% | |
| ATACCTTCATGAAGTGGTAA+GGG | - | chr3.3:83988944-83988963 | MS.gene38736:CDS | 35.0% | |
| ATATCCTTAGCAGCAAAAAG+TGG | + | chr3.3:83988717-83988736 | None:intergenic | 35.0% | |
| ATTCTTGAAGTTGCGATTCA+AGG | + | chr3.3:83988587-83988606 | None:intergenic | 35.0% | |
| CCAGTGAGATTATCAAGAAA+CGG | + | chr3.3:83989417-83989436 | None:intergenic | 35.0% | |
| GAATTCAACCTTATTGATGG+CGG | - | chr3.3:83989188-83989207 | MS.gene38736:intron | 35.0% | |
| GTTTGAGCCAATTGAAAATG+GGG | - | chr3.3:83989846-83989865 | MS.gene38736:CDS | 35.0% | |
| TAGCAGGACCAAAATATGAT+GGG | - | chr3.3:83988919-83988938 | MS.gene38736:CDS | 35.0% | |
| TAGTCAATCATCAGCTGATA+TGG | - | chr3.3:83989546-83989565 | MS.gene38736:CDS | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | - | chr3.3:83988591-83988610 | MS.gene38736:intron | 35.0% | |
| TCTAAATTGACCTTAGAGAC+TGG | + | chr3.3:83989817-83989836 | None:intergenic | 35.0% | |
| TGTGATTACAGGAACAAGTA+CGG | - | chr3.3:83988644-83988663 | MS.gene38736:CDS | 35.0% | |
| TTAGCAGGACCAAAATATGA+TGG | - | chr3.3:83988918-83988937 | MS.gene38736:CDS | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | - | chr3.3:83989155-83989174 | MS.gene38736:CDS | 35.0% | |
| TTGTGTTGTGGAAAGATCTT+AGG | + | chr3.3:83988765-83988784 | None:intergenic | 35.0% | |
| TTTCTATTCCATCAAGCCAA+TGG | - | chr3.3:83989384-83989403 | MS.gene38736:CDS | 35.0% | |
| ! | CGTTTCTTGATAATCTCACT+GGG | - | chr3.3:83989415-83989434 | MS.gene38736:CDS | 35.0% |
| ! | TTGGTTTCCCCATTTTCAAT+TGG | + | chr3.3:83989856-83989875 | None:intergenic | 35.0% |
| !! | ACTATACTAAGCATTGATGG+TGG | - | chr3.3:83988522-83988541 | MS.gene38736:intron | 35.0% |
| !! | GTGACTATACTAAGCATTGA+TGG | - | chr3.3:83988519-83988538 | MS.gene38736:intron | 35.0% |
| !!! | TTTACCTTTTGAGAGCATCT+TGG | + | chr3.3:83989879-83989898 | None:intergenic | 35.0% |
| AAATACTTTCCCAAGAGAGG+AGG | - | chr3.3:83989986-83990005 | MS.gene38736:CDS | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | + | chr3.3:83988505-83988524 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+GGG | - | chr3.3:83989712-83989731 | MS.gene38736:intron | 40.0% | |
| ATGCGAAAATGGCAGCAAAA+TGG | - | chr3.3:83989470-83989489 | MS.gene38736:CDS | 40.0% | |
| CCAAAATACTTTCCCAAGAG+AGG | - | chr3.3:83989983-83990002 | MS.gene38736:CDS | 40.0% | |
| CGGTGTTTGTGCAAATAATC+CGG | - | chr3.3:83989208-83989227 | MS.gene38736:intron | 40.0% | |
| GATCAAGAAAACTCCTTGCA+TGG | - | chr3.3:83989067-83989086 | MS.gene38736:CDS | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | + | chr3.3:83988504-83988523 | None:intergenic | 40.0% | |
| GTGATTACAGGAACAAGTAC+GGG | - | chr3.3:83988645-83988664 | MS.gene38736:CDS | 40.0% | |
| GTTGAAGAAACCAGTCTCTA+AGG | - | chr3.3:83989804-83989823 | MS.gene38736:CDS | 40.0% | |
| TGAATTAAGTGCTCGAGTGA+CGG | + | chr3.3:83989590-83989609 | None:intergenic | 40.0% | |
| TGCGAAAATGGCAGCAAAAT+GGG | - | chr3.3:83989471-83989490 | MS.gene38736:CDS | 40.0% | |
| TGGGAAATACCTTCATGAAG+TGG | - | chr3.3:83988938-83988957 | MS.gene38736:CDS | 40.0% | |
| TGGTTCTTGAAATTGTAGCC+TGG | + | chr3.3:83989146-83989165 | None:intergenic | 40.0% | |
| TTGTAGCCTGGAAGATAAGT+AGG | + | chr3.3:83989134-83989153 | None:intergenic | 40.0% | |
| ! | AGTGGACGCTTTTGTTCATT+CGG | + | chr3.3:83988699-83988718 | None:intergenic | 40.0% |
| ! | CCGTTTCTTGATAATCTCAC+TGG | - | chr3.3:83989414-83989433 | MS.gene38736:CDS | 40.0% |
| !! | ATACTAAGCATTGATGGTGG+CGG | - | chr3.3:83988525-83988544 | MS.gene38736:intron | 40.0% |
| !! | GCTATATTCCATTGGCTTGA+TGG | + | chr3.3:83989395-83989414 | None:intergenic | 40.0% |
| !! | GGAGAGTGTTCCAAGTAAAA+TGG | + | chr3.3:83988744-83988763 | None:intergenic | 40.0% |
| !!! | CCTCTCTTGGGAAAGTATTT+TGG | + | chr3.3:83989986-83990005 | None:intergenic | 40.0% |
| AAGATAAGTAGGTGCAGCAG+AGG | + | chr3.3:83989123-83989142 | None:intergenic | 45.0% | |
| AAGGAACTCGAGGATAGTTG+CGG | + | chr3.3:83988568-83988587 | None:intergenic | 45.0% | |
| AAGTGGTAAGGGAGAAGTTG+GGG | - | chr3.3:83988955-83988974 | MS.gene38736:CDS | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | + | chr3.3:83988501-83988520 | None:intergenic | 45.0% | |
| ATTACAGGAACAAGTACGGG+TGG | - | chr3.3:83988648-83988667 | MS.gene38736:CDS | 45.0% | |
| CACAAACACCGCCATCAATA+AGG | + | chr3.3:83989199-83989218 | None:intergenic | 45.0% | |
| CCAACCAAGATGCTCTCAAA+AGG | - | chr3.3:83989872-83989891 | MS.gene38736:CDS | 45.0% | |
| GAAGTGGTAAGGGAGAAGTT+GGG | - | chr3.3:83988954-83988973 | MS.gene38736:CDS | 45.0% | |
| GCGAAAATGGCAGCAAAATG+GGG | - | chr3.3:83989472-83989491 | MS.gene38736:CDS | 45.0% | |
| GTGTGTTGCCTTCTGTATCT+TGG | + | chr3.3:83989166-83989185 | None:intergenic | 45.0% | |
| TCTCCCTTACCACTTCATGA+AGG | + | chr3.3:83988950-83988969 | None:intergenic | 45.0% | |
| TGAAGTGGTAAGGGAGAAGT+TGG | - | chr3.3:83988953-83988972 | MS.gene38736:CDS | 45.0% | |
| ! | AACTCATGCAGGGACTTGTT+GGG | - | chr3.3:83988870-83988889 | MS.gene38736:intron | 45.0% |
| ! | GTGGACGCTTTTGTTCATTC+GGG | + | chr3.3:83988698-83988717 | None:intergenic | 45.0% |
| ! | TGGACGCTTTTGTTCATTCG+GGG | + | chr3.3:83988697-83988716 | None:intergenic | 45.0% |
| ! | TTGATAATCTCACTGGGCAC+TGG | - | chr3.3:83989421-83989440 | MS.gene38736:CDS | 45.0% |
| !! | ATTGATGGTGGCGGTATAAG+GGG | - | chr3.3:83988534-83988553 | MS.gene38736:intron | 45.0% |
| !! | CATTGATGGTGGCGGTATAA+GGG | - | chr3.3:83988533-83988552 | MS.gene38736:intron | 45.0% |
| !! | CTGCTGGATTGGTTAACTCA+CGG | - | chr3.3:83989496-83989515 | MS.gene38736:CDS | 45.0% |
| !!! | CCTTTTGAGAGCATCTTGGT+TGG | + | chr3.3:83989875-83989894 | None:intergenic | 45.0% |
| AGGAACTCGAGGATAGTTGC+GGG | + | chr3.3:83988567-83988586 | None:intergenic | 50.0% | |
| AGTGGTAAGGGAGAAGTTGG+GGG | - | chr3.3:83988956-83988975 | MS.gene38736:CDS | 50.0% | |
| CAAAATGGGGTCTGCTGGAT+TGG | - | chr3.3:83989485-83989504 | MS.gene38736:CDS | 50.0% | |
| GAACTCATGCAGGGACTTGT+TGG | - | chr3.3:83988869-83988888 | MS.gene38736:intron | 50.0% | |
| GCTGCACCTACTTATCTTCC+AGG | - | chr3.3:83989125-83989144 | MS.gene38736:CDS | 50.0% | |
| GTTGCGATTCAAGGAACTCG+AGG | + | chr3.3:83988578-83988597 | None:intergenic | 50.0% | |
| TGGTGAATCTGCTAGGCTTG+CGG | - | chr3.3:83988611-83988630 | MS.gene38736:intron | 50.0% | |
| TGTGAGGGGATTTCAACTCG+CGG | + | chr3.3:83990014-83990033 | None:intergenic | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | - | chr3.3:83989082-83989101 | MS.gene38736:CDS | 50.0% | |
| !! | AGGGACTTGTTGGGATCAGT+GGG | - | chr3.3:83988879-83988898 | MS.gene38736:intron | 50.0% |
| !! | CTGGATTGGTTAACTCACGG+TGG | - | chr3.3:83989499-83989518 | MS.gene38736:CDS | 50.0% |
| !! | GCATTGATGGTGGCGGTATA+AGG | - | chr3.3:83988532-83988551 | MS.gene38736:intron | 50.0% |
| !!! | GCGTCCACTTTTTGCTGCTA+AGG | - | chr3.3:83988710-83988729 | MS.gene38736:CDS | 50.0% |
| CAGATTCAGCCTCCCACCTA+TGG | - | chr3.3:83988489-83988508 | MS.gene38736:CDS | 55.0% | |
| GAGAGTCGAGCATCCATGCA+AGG | + | chr3.3:83989083-83989102 | None:intergenic | 55.0% | |
| !! | CAGGGACTTGTTGGGATCAG+TGG | - | chr3.3:83988878-83988897 | MS.gene38736:intron | 55.0% |
| !! | GGGACTTGTTGGGATCAGTG+GGG | - | chr3.3:83988880-83988899 | MS.gene38736:intron | 55.0% |
| CTCGAGTGACGGCAGCAAGA+TGG | + | chr3.3:83989579-83989598 | None:intergenic | 60.0% | |
| GGCAGCAAAATGGGGTCTGC+TGG | - | chr3.3:83989480-83989499 | MS.gene38736:CDS | 60.0% | |
| ACTCGCGGAGCCTCCTCTCT+TGG | + | chr3.3:83989999-83990018 | None:intergenic | 65.0% | |
| CTCGCGGAGCCTCCTCTCTT+GGG | + | chr3.3:83989998-83990017 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83988462 | 83990053 | 83988462 | ID=MS.gene38736 |
| chr3.3 | mRNA | 83988462 | 83990053 | 83988462 | ID=MS.gene38736.t1;Parent=MS.gene38736 |
| chr3.3 | exon | 83989731 | 83990053 | 83989731 | ID=MS.gene38736.t1.exon1;Parent=MS.gene38736.t1 |
| chr3.3 | CDS | 83989731 | 83990053 | 83989731 | ID=cds.MS.gene38736.t1;Parent=MS.gene38736.t1 |
| chr3.3 | exon | 83989286 | 83989634 | 83989286 | ID=MS.gene38736.t1.exon2;Parent=MS.gene38736.t1 |
| chr3.3 | CDS | 83989286 | 83989634 | 83989286 | ID=cds.MS.gene38736.t1;Parent=MS.gene38736.t1 |
| chr3.3 | exon | 83988882 | 83989184 | 83988882 | ID=MS.gene38736.t1.exon3;Parent=MS.gene38736.t1 |
| chr3.3 | CDS | 83988882 | 83989184 | 83988882 | ID=cds.MS.gene38736.t1;Parent=MS.gene38736.t1 |
| chr3.3 | exon | 83988622 | 83988797 | 83988622 | ID=MS.gene38736.t1.exon4;Parent=MS.gene38736.t1 |
| chr3.3 | CDS | 83988622 | 83988797 | 83988622 | ID=cds.MS.gene38736.t1;Parent=MS.gene38736.t1 |
| chr3.3 | exon | 83988462 | 83988537 | 83988462 | ID=MS.gene38736.t1.exon5;Parent=MS.gene38736.t1 |
| chr3.3 | CDS | 83988462 | 83988537 | 83988462 | ID=cds.MS.gene38736.t1;Parent=MS.gene38736.t1 |
| Gene Sequence |
| Protein sequence |
