Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054623.t1 | XP_003603015.1 | 96.3 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 3.00E-225 | 790.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054623.t1 | O48723 | 63.9 | 402 | 141 | 2 | 1 | 402 | 3 | 400 | 5.9e-145 | 515.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054623.t1 | G7J6A9 | 96.3 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 2.2e-225 | 790.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054623 | MS.gene38732 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene054623 | MS.gene38736 | 0.907076 | 7.49E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054623.t1 | MTR_3g101410 | 96.333 | 409 | 14 | 1 | 1 | 408 | 1 | 409 | 0.0 | 817 |
| MS.gene054623.t1 | MTR_3g101400 | 90.931 | 408 | 37 | 0 | 1 | 408 | 1 | 408 | 0.0 | 753 |
| MS.gene054623.t1 | MTR_1g019940 | 78.025 | 405 | 87 | 2 | 4 | 406 | 5 | 409 | 0.0 | 672 |
| MS.gene054623.t1 | MTR_1g019940 | 77.778 | 405 | 86 | 3 | 4 | 406 | 5 | 407 | 0.0 | 665 |
| MS.gene054623.t1 | MTR_1g019940 | 78.276 | 290 | 62 | 1 | 118 | 406 | 1 | 290 | 4.18e-175 | 490 |
| MS.gene054623.t1 | MTR_5g017670 | 54.271 | 398 | 174 | 4 | 4 | 399 | 3 | 394 | 1.38e-155 | 445 |
| MS.gene054623.t1 | MTR_5g017680 | 55.352 | 383 | 167 | 3 | 18 | 397 | 8 | 389 | 5.30e-155 | 443 |
| MS.gene054623.t1 | MTR_8g007040 | 44.472 | 398 | 188 | 11 | 10 | 396 | 22 | 397 | 6.06e-102 | 309 |
| MS.gene054623.t1 | MTR_8g007095 | 43.687 | 396 | 194 | 11 | 10 | 396 | 22 | 397 | 5.58e-99 | 301 |
| MS.gene054623.t1 | MTR_8g007090 | 43.434 | 396 | 195 | 11 | 10 | 396 | 22 | 397 | 6.15e-98 | 299 |
| MS.gene054623.t1 | MTR_8g007140 | 47.044 | 389 | 176 | 7 | 10 | 396 | 23 | 383 | 5.95e-97 | 296 |
| MS.gene054623.t1 | MTR_8g007065 | 40.712 | 393 | 208 | 10 | 10 | 396 | 22 | 395 | 7.17e-85 | 265 |
| MS.gene054623.t1 | MTR_8g007125 | 42.132 | 394 | 199 | 10 | 10 | 396 | 22 | 393 | 1.65e-84 | 264 |
| MS.gene054623.t1 | MTR_1g095165 | 30.203 | 394 | 241 | 12 | 20 | 399 | 75 | 448 | 2.36e-43 | 157 |
| MS.gene054623.t1 | MTR_7g094940 | 28.622 | 283 | 183 | 8 | 22 | 299 | 32 | 300 | 3.03e-28 | 114 |
| MS.gene054623.t1 | MTR_1g072190 | 26.667 | 345 | 206 | 11 | 22 | 355 | 32 | 340 | 9.28e-28 | 113 |
| MS.gene054623.t1 | MTR_2g029510 | 28.426 | 394 | 223 | 18 | 12 | 397 | 61 | 403 | 3.67e-23 | 101 |
| MS.gene054623.t1 | MTR_0368s0010 | 27.481 | 262 | 166 | 10 | 142 | 399 | 43 | 284 | 2.92e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054623.t1 | AT2G26560 | 63.772 | 403 | 142 | 2 | 1 | 403 | 3 | 401 | 0.0 | 529 |
| MS.gene054623.t1 | AT4G37070 | 58.869 | 389 | 160 | 0 | 12 | 400 | 11 | 399 | 2.43e-169 | 480 |
| MS.gene054623.t1 | AT4G37060 | 56.997 | 393 | 169 | 0 | 13 | 405 | 12 | 404 | 1.14e-164 | 468 |
| MS.gene054623.t1 | AT4G37050 | 58.333 | 408 | 158 | 3 | 2 | 401 | 21 | 424 | 3.50e-164 | 468 |
| MS.gene054623.t1 | AT4G37070 | 58.445 | 373 | 155 | 0 | 12 | 384 | 11 | 383 | 2.12e-160 | 456 |
| MS.gene054623.t1 | AT4G37070 | 58.445 | 373 | 155 | 0 | 12 | 384 | 11 | 383 | 2.12e-160 | 456 |
| MS.gene054623.t1 | AT4G37060 | 52.830 | 424 | 169 | 1 | 13 | 405 | 12 | 435 | 5.05e-158 | 453 |
| MS.gene054623.t1 | AT4G37070 | 56.300 | 373 | 152 | 1 | 12 | 384 | 11 | 372 | 3.66e-151 | 432 |
| MS.gene054623.t1 | AT5G43590 | 53.470 | 389 | 170 | 5 | 12 | 396 | 6 | 387 | 1.02e-127 | 374 |
| MS.gene054623.t1 | AT5G43590 | 53.470 | 389 | 170 | 5 | 12 | 396 | 73 | 454 | 1.20e-126 | 374 |
| MS.gene054623.t1 | AT4G29800 | 28.500 | 400 | 249 | 15 | 20 | 403 | 121 | 499 | 2.09e-37 | 142 |
| MS.gene054623.t1 | AT2G39220 | 29.124 | 388 | 243 | 14 | 20 | 399 | 108 | 471 | 3.27e-37 | 141 |
| MS.gene054623.t1 | AT4G29800 | 28.429 | 401 | 249 | 15 | 20 | 403 | 121 | 500 | 3.42e-37 | 142 |
| MS.gene054623.t1 | AT3G54950 | 30.252 | 357 | 215 | 12 | 20 | 369 | 98 | 427 | 6.31e-37 | 140 |
| MS.gene054623.t1 | AT3G63200 | 29.841 | 315 | 189 | 12 | 22 | 330 | 32 | 320 | 1.02e-32 | 127 |
Find 102 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTTGGGAAAGTATTT+TGG | 0.144450 | 3.4:+89276262 | None:intergenic |
| GCATTGATGGTGGCGGTATA+AGG | 0.221210 | 3.4:-89277987 | MS.gene054623:CDS |
| TCAACAATTTGTCACCAATT+TGG | 0.229429 | 3.4:+89276733 | None:intergenic |
| ATGTTTGAGCCAATTGAAAA+TGG | 0.253040 | 3.4:-89276675 | MS.gene054623:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3.4:+89277475 | None:intergenic |
| AGGTATTTCCCATCATATTT+TGG | 0.273356 | 3.4:+89277592 | None:intergenic |
| TTGACTAAACATGTCGATTA+AGG | 0.277813 | 3.4:+89276989 | None:intergenic |
| ATGCGAAAATGGCAGCAAAA+TGG | 0.281352 | 3.4:-89277049 | MS.gene054623:CDS |
| GCTATATTCCATTGGCTTGA+TGG | 0.290285 | 3.4:+89277127 | None:intergenic |
| GGAGAGTGTTCCAAGTAAAA+TGG | 0.292232 | 3.4:+89277778 | None:intergenic |
| TAGTCAATCATCAGCTGATA+TGG | 0.302481 | 3.4:-89276973 | MS.gene054623:CDS |
| CATTGATGGTGGCGGTATAA+GGG | 0.333516 | 3.4:-89277986 | MS.gene054623:CDS |
| TGCGAAAATGGCAGCAAAAT+GGG | 0.333561 | 3.4:-89277048 | MS.gene054623:CDS |
| GATTACTTTGATGTGATTAC+AGG | 0.334035 | 3.4:-89277886 | MS.gene054623:CDS |
| GATGATATTTCAGACTTTAG+TGG | 0.338291 | 3.4:-89277201 | MS.gene054623:intron |
| GTGTGTTGCCTTCTGTATCT+TGG | 0.340354 | 3.4:+89277356 | None:intergenic |
| CACAAACACCGCCATCAATA+AGG | 0.340884 | 3.4:+89277323 | None:intergenic |
| TTATGTTGTGGAAAGATCTT+AGG | 0.343987 | 3.4:+89277757 | None:intergenic |
| ACAAAAGTTCAATGCGAAAA+TGG | 0.352216 | 3.4:-89277060 | MS.gene054623:CDS |
| CATGAATTCAACCTTATTGA+TGG | 0.370800 | 3.4:-89277334 | MS.gene054623:CDS |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3.4:+89277935 | None:intergenic |
| GCTGCACCTACTTATCTTCC+AGG | 0.379184 | 3.4:-89277394 | MS.gene054623:CDS |
| ACTCGCGGAGCCTCCTCTCT+TGG | 0.386057 | 3.4:+89276249 | None:intergenic |
| GGCAGCAAAATGGGGTCTGC+TGG | 0.394148 | 3.4:-89277039 | MS.gene054623:CDS |
| TGAAGTGGTAAGGGAGAAGT+TGG | 0.397346 | 3.4:-89277566 | MS.gene054623:CDS |
| GTTGAAGAAACCAGTCTCTA+AGG | 0.407068 | 3.4:-89276715 | MS.gene054623:CDS |
| CAAAATGGGGTCTGCTGGAT+TGG | 0.411164 | 3.4:-89277034 | MS.gene054623:CDS |
| AACTCATGCAGGGACTTGTT+GGG | 0.412393 | 3.4:-89277649 | MS.gene054623:intron |
| TGTTTGAGCCAATTGAAAAT+GGG | 0.414266 | 3.4:-89276674 | MS.gene054623:CDS |
| GAACTCATGCAGGGACTTGT+TGG | 0.416399 | 3.4:-89277650 | MS.gene054623:intron |
| CAGATTCAGCCTCCCACCTA+TGG | 0.421293 | 3.4:-89278030 | MS.gene054623:CDS |
| CTCGCGGAGCCTCCTCTCTT+GGG | 0.424985 | 3.4:+89276250 | None:intergenic |
| GAAGTGGTAAGGGAGAAGTT+GGG | 0.431386 | 3.4:-89277565 | MS.gene054623:CDS |
| GTGACTATACTAAGCATTGA+TGG | 0.439641 | 3.4:-89278000 | MS.gene054623:CDS |
| TTGATAATCTCACTGGGCAC+TGG | 0.445741 | 3.4:-89277098 | MS.gene054623:CDS |
| CCGTTTCTTGATAATCTCAC+TGG | 0.457904 | 3.4:-89277105 | MS.gene054623:CDS |
| TCGCAACTTCAAGAATTAGA+TGG | 0.459099 | 3.4:-89277928 | MS.gene054623:CDS |
| ACATAATTACCTACGGATAC+AGG | 0.468841 | 3.4:-89276907 | MS.gene054623:intron |
| CAGGGACTTGTTGGGATCAG+TGG | 0.475838 | 3.4:-89277641 | MS.gene054623:CDS |
| AGGAACTCGAGGATAGTTGC+GGG | 0.480109 | 3.4:+89277955 | None:intergenic |
| TGACTAAACATGTCGATTAA+GGG | 0.483825 | 3.4:+89276990 | None:intergenic |
| AATACCTTCATGAAGTGGTA+AGG | 0.488193 | 3.4:-89277576 | MS.gene054623:CDS |
| CGGTGTTTGTGCAAATAATC+CGG | 0.488784 | 3.4:-89277311 | MS.gene054623:intron |
| TCTAAGGTCAATTTAGAGAA+TGG | 0.490927 | 3.4:-89276699 | MS.gene054623:CDS |
| AAGTGGTAAGGGAGAAGTTG+GGG | 0.499535 | 3.4:-89277564 | MS.gene054623:CDS |
| TTAAAGCTTTATTAGTGTGA+GGG | 0.500043 | 3.4:+89276219 | None:intergenic |
| CCAAAATACTTTCCCAAGAG+AGG | 0.501656 | 3.4:-89276262 | MS.gene054623:CDS |
| AGGGACTTGTTGGGATCAGT+GGG | 0.501975 | 3.4:-89277640 | MS.gene054623:CDS |
| CCAACCAAGATGCTCTCAAA+AGG | 0.502859 | 3.4:-89276647 | MS.gene054623:intron |
| TCTAAATTGACCTTAGAGAC+TGG | 0.503415 | 3.4:+89276705 | None:intergenic |
| TTGTAGCCTGGAAGATAAGT+AGG | 0.509381 | 3.4:+89277388 | None:intergenic |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3.4:-89277437 | MS.gene054623:CDS |
| CTCGGGTGACGGCAGCAAGA+TGG | 0.516447 | 3.4:+89276943 | None:intergenic |
| GATCAAGAAAACTCCTTGCA+TGG | 0.518456 | 3.4:-89277452 | MS.gene054623:CDS |
| TTAGCAGGACCAAAATATGA+TGG | 0.523003 | 3.4:-89277601 | MS.gene054623:CDS |
| TGAATTAAGTGCTCGGGTGA+CGG | 0.539568 | 3.4:+89276932 | None:intergenic |
| AGATATTCGTACTTATGTTG+TGG | 0.539635 | 3.4:+89277745 | None:intergenic |
| AAGAAACGGCTATATTCCAT+TGG | 0.541585 | 3.4:+89277119 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.542739 | 3.4:+89278017 | None:intergenic |
| TGGTTCTTGAAATTGTAGCC+TGG | 0.542827 | 3.4:+89277376 | None:intergenic |
| TATAGTCACTAAGTTTCCAT+AGG | 0.546556 | 3.4:+89278014 | None:intergenic |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3.4:+89278018 | None:intergenic |
| CCAGTGAGATTATCAAGAAA+CGG | 0.553943 | 3.4:+89277105 | None:intergenic |
| TGTGATTACAGGAACAAGTA+CGG | 0.557423 | 3.4:-89277875 | MS.gene054623:CDS |
| ATTAAAGCTTTATTAGTGTG+AGG | 0.557747 | 3.4:+89276218 | None:intergenic |
| ATTCACAACATAATTACCTA+CGG | 0.562378 | 3.4:-89276914 | MS.gene054623:CDS |
| TAAAGCTTTATTAGTGTGAG+GGG | 0.564782 | 3.4:+89276220 | None:intergenic |
| CGTTTCTTGATAATCTCACT+GGG | 0.566181 | 3.4:-89277104 | MS.gene054623:CDS |
| GCGAAAATGGCAGCAAAATG+GGG | 0.566216 | 3.4:-89277047 | MS.gene054623:CDS |
| AAATTGTTCAGATCATTAGC+AGG | 0.566843 | 3.4:-89277616 | MS.gene054623:CDS |
| AATGCAGGATGATACATTGA+CGG | 0.567386 | 3.4:-89276808 | MS.gene054623:intron |
| AATTAGATGGTGAATCTGCT+AGG | 0.567945 | 3.4:-89277915 | MS.gene054623:CDS |
| CTTCTATTCCATCAAGCCAA+TGG | 0.568706 | 3.4:-89277135 | MS.gene054623:CDS |
| ATTGATGGTGGCGGTATAAG+GGG | 0.574647 | 3.4:-89277985 | MS.gene054623:CDS |
| TAGCAGGACCAAAATATGAT+GGG | 0.575443 | 3.4:-89277600 | MS.gene054623:CDS |
| TCTCCCTTACCACTTCATGA+AGG | 0.576054 | 3.4:+89277572 | None:intergenic |
| AAGATAAGTAGGTGCAGCAG+AGG | 0.577597 | 3.4:+89277399 | None:intergenic |
| GTTTGAGCCAATTGAAAATG+GGG | 0.578259 | 3.4:-89276673 | MS.gene054623:CDS |
| ATACCTTCATGAAGTGGTAA+GGG | 0.581117 | 3.4:-89277575 | MS.gene054623:CDS |
| GTGATTACAGGAACAAGTAC+GGG | 0.582488 | 3.4:-89277874 | MS.gene054623:CDS |
| CTGCTGGATTGGTTAACTCA+CGG | 0.586370 | 3.4:-89277023 | MS.gene054623:CDS |
| ATGCAGGATGATACATTGAC+GGG | 0.587863 | 3.4:-89276807 | MS.gene054623:intron |
| ATGTTGTGAATTAAGTGCTC+GGG | 0.594622 | 3.4:+89276926 | None:intergenic |
| TGGTGAATCTGCTAGGCTTG+CGG | 0.599282 | 3.4:-89277908 | MS.gene054623:CDS |
| TATGTTGTGAATTAAGTGCT+CGG | 0.604711 | 3.4:+89276925 | None:intergenic |
| TGGGAAATACCTTCATGAAG+TGG | 0.608258 | 3.4:-89277581 | MS.gene054623:CDS |
| AAGGAACTCGAGGATAGTTG+CGG | 0.612182 | 3.4:+89277954 | None:intergenic |
| ATACTAAGCATTGATGGTGG+CGG | 0.616430 | 3.4:-89277994 | MS.gene054623:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.625469 | 3.4:+89277439 | None:intergenic |
| TTCAAGAACCAAGATACAGA+AGG | 0.625819 | 3.4:-89277364 | MS.gene054623:CDS |
| GTTGCGATTCAAGGAACTCG+AGG | 0.637528 | 3.4:+89277944 | None:intergenic |
| AAATGTGGGAATCACAATGT+TGG | 0.650439 | 3.4:+89277516 | None:intergenic |
| AGTGGTAAGGGAGAAGTTGG+GGG | 0.653344 | 3.4:-89277563 | MS.gene054623:CDS |
| AAATACTTTCCCAAGAGAGG+AGG | 0.658189 | 3.4:-89276259 | MS.gene054623:CDS |
| ATAATTGTACCTGTATCCGT+AGG | 0.659663 | 3.4:+89276898 | None:intergenic |
| GAATTCAACCTTATTGATGG+CGG | 0.688975 | 3.4:-89277331 | MS.gene054623:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3.4:+89278021 | None:intergenic |
| TGTGAGGGGATTTCAACTCG+CGG | 0.697585 | 3.4:+89276234 | None:intergenic |
| ATTACAGGAACAAGTACGGG+TGG | 0.711093 | 3.4:-89277871 | MS.gene054623:CDS |
| ACTATACTAAGCATTGATGG+TGG | 0.712098 | 3.4:-89277997 | MS.gene054623:CDS |
| CTGGATTGGTTAACTCACGG+TGG | 0.721558 | 3.4:-89277020 | MS.gene054623:CDS |
| GGGACTTGTTGGGATCAGTG+GGG | 0.764722 | 3.4:-89277639 | MS.gene054623:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATAGTATATATAC+CGG | + | chr3.4:89276982-89277001 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTTACAAAATGT+CGG | + | chr3.4:89276582-89276601 | None:intergenic | 10.0% |
| !! | TTATAAGATGAGAAAATAAT+TGG | + | chr3.4:89276799-89276818 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr3.4:89277692-89277711 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr3.4:89277795-89277814 | None:intergenic | 15.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr3.4:89277732-89277751 | None:intergenic | 20.0% |
| !! | TAATTGTGTATTAAAAATGC+AGG | - | chr3.4:89277448-89277467 | MS.gene054623:CDS | 20.0% |
| !! | TTAGTCATTTAATCACATAA+TGG | + | chr3.4:89277962-89277981 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATGTCAAATGT+GGG | + | chr3.4:89276772-89276791 | None:intergenic | 20.0% |
| !!! | TTTTTCTAAATTCTCTTTTG+TGG | + | chr3.4:89277513-89277532 | None:intergenic | 20.0% |
| ! | AAACTATCCTTATCAACTAT+TGG | + | chr3.4:89277819-89277838 | None:intergenic | 25.0% |
| ! | ATTAGTAGTGTTTACATATG+TGG | + | chr3.4:89277407-89277426 | None:intergenic | 25.0% |
| ! | ATTCACAACATAATTACCTA+CGG | - | chr3.4:89277357-89277376 | MS.gene054623:CDS | 25.0% |
| ! | TTAGAAAAACTTTGCCAAAT+TGG | - | chr3.4:89277524-89277543 | MS.gene054623:CDS | 25.0% |
| ! | TTAGTAGTGTTTACATATGT+GGG | + | chr3.4:89277406-89277425 | None:intergenic | 25.0% |
| !! | AAACTAACCAATAGTTGATA+AGG | - | chr3.4:89277809-89277828 | MS.gene054623:CDS | 25.0% |
| !! | ATTGAACTTTTGTTCATTCT+TGG | + | chr3.4:89277204-89277223 | None:intergenic | 25.0% |
| !! | TTGAACTTTTGTTCATTCTT+GGG | + | chr3.4:89277203-89277222 | None:intergenic | 25.0% |
| !!! | AATAGTTGATAAGGATAGTT+TGG | - | chr3.4:89277818-89277837 | MS.gene054623:CDS | 25.0% |
| !!! | ACATTTGTTTTAATCTTTGC+AGG | - | chr3.4:89277982-89278001 | MS.gene054623:CDS | 25.0% |
| !!! | ATTAAAGCTTTATTAGTGTG+AGG | + | chr3.4:89278056-89278075 | None:intergenic | 25.0% |
| !!! | ATTGAATAACCAGTTGTTTT+TGG | - | chr3.4:89276999-89277018 | MS.gene054623:CDS | 25.0% |
| !!! | CATTGTTTTTATGTCAAATG+TGG | + | chr3.4:89276773-89276792 | None:intergenic | 25.0% |
| !!! | TTAAAGCTTTATTAGTGTGA+GGG | + | chr3.4:89278055-89278074 | None:intergenic | 25.0% |
| AAATTGTTCAGATCATTAGC+AGG | - | chr3.4:89276655-89276674 | MS.gene054623:CDS | 30.0% | |
| ACAAAAGTTCAATGCGAAAA+TGG | - | chr3.4:89277211-89277230 | MS.gene054623:intron | 30.0% | |
| AGATATTCGTACTTATGTTG+TGG | + | chr3.4:89276529-89276548 | None:intergenic | 30.0% | |
| ATAAATATTCGAACTCATGC+AGG | - | chr3.4:89276611-89276630 | MS.gene054623:intron | 30.0% | |
| ATGTTTGAGCCAATTGAAAA+TGG | - | chr3.4:89277596-89277615 | MS.gene054623:CDS | 30.0% | |
| CATGAATTCAACCTTATTGA+TGG | - | chr3.4:89276937-89276956 | MS.gene054623:CDS | 30.0% | |
| GATGATATTTCAGACTTTAG+TGG | - | chr3.4:89277070-89277089 | MS.gene054623:CDS | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | - | chr3.4:89276385-89276404 | MS.gene054623:intron | 30.0% | |
| TAAATATTCGAACTCATGCA+GGG | - | chr3.4:89276612-89276631 | MS.gene054623:intron | 30.0% | |
| TAGTAGTGTTTACATATGTG+GGG | + | chr3.4:89277405-89277424 | None:intergenic | 30.0% | |
| TATAGTCACTAAGTTTCCAT+AGG | + | chr3.4:89276260-89276279 | None:intergenic | 30.0% | |
| TATGTTGTGAATTAAGTGCT+CGG | + | chr3.4:89277349-89277368 | None:intergenic | 30.0% | |
| TCAACAATTTGTCACCAATT+TGG | + | chr3.4:89277541-89277560 | None:intergenic | 30.0% | |
| TGTTTGAGCCAATTGAAAAT+GGG | - | chr3.4:89277597-89277616 | MS.gene054623:CDS | 30.0% | |
| TTATGTTGTGGAAAGATCTT+AGG | + | chr3.4:89276517-89276536 | None:intergenic | 30.0% | |
| ! | AGGTATTTCCCATCATATTT+TGG | + | chr3.4:89276682-89276701 | None:intergenic | 30.0% |
| ! | GGATATCAAACCATTTTACT+TGG | - | chr3.4:89276483-89276502 | MS.gene054623:intron | 30.0% |
| ! | GTAGTGTGCAAAGTATTAAT+TGG | + | chr3.4:89277770-89277789 | None:intergenic | 30.0% |
| ! | GTTTGATTTCCAAAAACAAC+TGG | + | chr3.4:89277011-89277030 | None:intergenic | 30.0% |
| ! | TCTAAGGTCAATTTAGAGAA+TGG | - | chr3.4:89277572-89277591 | MS.gene054623:CDS | 30.0% |
| ! | TGACTAAACATGTCGATTAA+GGG | + | chr3.4:89277284-89277303 | None:intergenic | 30.0% |
| ! | TGTGCAAAGTATTAATTGGA+GGG | + | chr3.4:89277766-89277785 | None:intergenic | 30.0% |
| ! | TTGACTAAACATGTCGATTA+AGG | + | chr3.4:89277285-89277304 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr3.4:89277901-89277920 | MS.gene054623:CDS | 30.0% |
| !! | TAAAGCTTTATTAGTGTGAG+GGG | + | chr3.4:89278054-89278073 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr3.4:89277900-89277919 | None:intergenic | 30.0% |
| AAATGTGGGAATCACAATGT+TGG | + | chr3.4:89276758-89276777 | None:intergenic | 35.0% | |
| AAGAAACGGCTATATTCCAT+TGG | + | chr3.4:89277155-89277174 | None:intergenic | 35.0% | |
| AATACCTTCATGAAGTGGTA+AGG | - | chr3.4:89276695-89276714 | MS.gene054623:CDS | 35.0% | |
| AATGCAGGATGATACATTGA+CGG | - | chr3.4:89277463-89277482 | MS.gene054623:CDS | 35.0% | |
| AATTAGATGGTGAATCTGCT+AGG | - | chr3.4:89276356-89276375 | MS.gene054623:intron | 35.0% | |
| ACATAATTACCTACGGATAC+AGG | - | chr3.4:89277364-89277383 | MS.gene054623:CDS | 35.0% | |
| ATAATTGTACCTGTATCCGT+AGG | + | chr3.4:89277376-89277395 | None:intergenic | 35.0% | |
| ATACCTTCATGAAGTGGTAA+GGG | - | chr3.4:89276696-89276715 | MS.gene054623:CDS | 35.0% | |
| ATGTTGTGAATTAAGTGCTC+GGG | + | chr3.4:89277348-89277367 | None:intergenic | 35.0% | |
| ATTCTTGAAGTTGCGATTCA+AGG | + | chr3.4:89276339-89276358 | None:intergenic | 35.0% | |
| CCAGTGAGATTATCAAGAAA+CGG | + | chr3.4:89277169-89277188 | None:intergenic | 35.0% | |
| GAATTCAACCTTATTGATGG+CGG | - | chr3.4:89276940-89276959 | MS.gene054623:CDS | 35.0% | |
| GTTTGAGCCAATTGAAAATG+GGG | - | chr3.4:89277598-89277617 | MS.gene054623:CDS | 35.0% | |
| TAGCAGGACCAAAATATGAT+GGG | - | chr3.4:89276671-89276690 | MS.gene054623:CDS | 35.0% | |
| TAGTCAATCATCAGCTGATA+TGG | - | chr3.4:89277298-89277317 | MS.gene054623:intron | 35.0% | |
| TCGCAACTTCAAGAATTAGA+TGG | - | chr3.4:89276343-89276362 | MS.gene054623:intron | 35.0% | |
| TCTAAATTGACCTTAGAGAC+TGG | + | chr3.4:89277569-89277588 | None:intergenic | 35.0% | |
| TGTGATTACAGGAACAAGTA+CGG | - | chr3.4:89276396-89276415 | MS.gene054623:intron | 35.0% | |
| TTAGCAGGACCAAAATATGA+TGG | - | chr3.4:89276670-89276689 | MS.gene054623:CDS | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | - | chr3.4:89276907-89276926 | MS.gene054623:intron | 35.0% | |
| ! | CGTTTCTTGATAATCTCACT+GGG | - | chr3.4:89277167-89277186 | MS.gene054623:CDS | 35.0% |
| ! | GTGTGCAAAGTATTAATTGG+AGG | + | chr3.4:89277767-89277786 | None:intergenic | 35.0% |
| ! | TTGGTTTCCCCATTTTCAAT+TGG | + | chr3.4:89277608-89277627 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr3.4:89277666-89277685 | None:intergenic | 35.0% |
| !! | ACTATACTAAGCATTGATGG+TGG | - | chr3.4:89276274-89276293 | MS.gene054623:intron | 35.0% |
| !! | GTGACTATACTAAGCATTGA+TGG | - | chr3.4:89276271-89276290 | MS.gene054623:intron | 35.0% |
| !!! | TTTACCTTTTGAGAGCATCT+TGG | + | chr3.4:89277631-89277650 | None:intergenic | 35.0% |
| AAATACTTTCCCAAGAGAGG+AGG | - | chr3.4:89278012-89278031 | MS.gene054623:CDS | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | + | chr3.4:89276257-89276276 | None:intergenic | 40.0% | |
| ATATCCCTAGCAGCAAAAAG+TGG | + | chr3.4:89276469-89276488 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+GGG | - | chr3.4:89277464-89277483 | MS.gene054623:CDS | 40.0% | |
| ATGCGAAAATGGCAGCAAAA+TGG | - | chr3.4:89277222-89277241 | MS.gene054623:intron | 40.0% | |
| CCAAAATACTTTCCCAAGAG+AGG | - | chr3.4:89278009-89278028 | MS.gene054623:CDS | 40.0% | |
| CGGTGTTTGTGCAAATAATC+CGG | - | chr3.4:89276960-89276979 | MS.gene054623:CDS | 40.0% | |
| CTTCTATTCCATCAAGCCAA+TGG | - | chr3.4:89277136-89277155 | MS.gene054623:CDS | 40.0% | |
| GATCAAGAAAACTCCTTGCA+TGG | - | chr3.4:89276819-89276838 | MS.gene054623:intron | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | + | chr3.4:89276256-89276275 | None:intergenic | 40.0% | |
| GTGATTACAGGAACAAGTAC+GGG | - | chr3.4:89276397-89276416 | MS.gene054623:intron | 40.0% | |
| GTTGAAGAAACCAGTCTCTA+AGG | - | chr3.4:89277556-89277575 | MS.gene054623:CDS | 40.0% | |
| TGCGAAAATGGCAGCAAAAT+GGG | - | chr3.4:89277223-89277242 | MS.gene054623:intron | 40.0% | |
| TGGGAAATACCTTCATGAAG+TGG | - | chr3.4:89276690-89276709 | MS.gene054623:CDS | 40.0% | |
| TGGTTCTTGAAATTGTAGCC+TGG | + | chr3.4:89276898-89276917 | None:intergenic | 40.0% | |
| TTGTAGCCTGGAAGATAAGT+AGG | + | chr3.4:89276886-89276905 | None:intergenic | 40.0% | |
| ! | AGTGGACGCTTTTGTTCATT+CGG | + | chr3.4:89276451-89276470 | None:intergenic | 40.0% |
| ! | CCGTTTCTTGATAATCTCAC+TGG | - | chr3.4:89277166-89277185 | MS.gene054623:CDS | 40.0% |
| !! | ATACTAAGCATTGATGGTGG+CGG | - | chr3.4:89276277-89276296 | MS.gene054623:intron | 40.0% |
| !! | GCTATATTCCATTGGCTTGA+TGG | + | chr3.4:89277147-89277166 | None:intergenic | 40.0% |
| !! | GGAGAGTGTTCCAAGTAAAA+TGG | + | chr3.4:89276496-89276515 | None:intergenic | 40.0% |
| !!! | CCTCTCTTGGGAAAGTATTT+TGG | + | chr3.4:89278012-89278031 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr3.4:89277905-89277924 | MS.gene054623:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr3.4:89277924-89277905 | None:intergenic | 40.0% |
| AAGATAAGTAGGTGCAGCAG+AGG | + | chr3.4:89276875-89276894 | None:intergenic | 45.0% | |
| AAGGAACTCGAGGATAGTTG+CGG | + | chr3.4:89276320-89276339 | None:intergenic | 45.0% | |
| AAGTGGTAAGGGAGAAGTTG+GGG | - | chr3.4:89276707-89276726 | MS.gene054623:CDS | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | + | chr3.4:89276253-89276272 | None:intergenic | 45.0% | |
| ATTACAGGAACAAGTACGGG+TGG | - | chr3.4:89276400-89276419 | MS.gene054623:intron | 45.0% | |
| CACAAACACCGCCATCAATA+AGG | + | chr3.4:89276951-89276970 | None:intergenic | 45.0% | |
| CCAACCAAGATGCTCTCAAA+AGG | - | chr3.4:89277624-89277643 | MS.gene054623:CDS | 45.0% | |
| GAAGTGGTAAGGGAGAAGTT+GGG | - | chr3.4:89276706-89276725 | MS.gene054623:CDS | 45.0% | |
| GCGAAAATGGCAGCAAAATG+GGG | - | chr3.4:89277224-89277243 | MS.gene054623:intron | 45.0% | |
| GTGTGTTGCCTTCTGTATCT+TGG | + | chr3.4:89276918-89276937 | None:intergenic | 45.0% | |
| TCTCCCTTACCACTTCATGA+AGG | + | chr3.4:89276702-89276721 | None:intergenic | 45.0% | |
| TGAAGTGGTAAGGGAGAAGT+TGG | - | chr3.4:89276705-89276724 | MS.gene054623:CDS | 45.0% | |
| TGAATTAAGTGCTCGGGTGA+CGG | + | chr3.4:89277342-89277361 | None:intergenic | 45.0% | |
| ! | AACTCATGCAGGGACTTGTT+GGG | - | chr3.4:89276622-89276641 | MS.gene054623:intron | 45.0% |
| ! | GTGGACGCTTTTGTTCATTC+GGG | + | chr3.4:89276450-89276469 | None:intergenic | 45.0% |
| ! | TGGACGCTTTTGTTCATTCG+GGG | + | chr3.4:89276449-89276468 | None:intergenic | 45.0% |
| ! | TTGATAATCTCACTGGGCAC+TGG | - | chr3.4:89277173-89277192 | MS.gene054623:CDS | 45.0% |
| !! | ATTGATGGTGGCGGTATAAG+GGG | - | chr3.4:89276286-89276305 | MS.gene054623:intron | 45.0% |
| !! | CATTGATGGTGGCGGTATAA+GGG | - | chr3.4:89276285-89276304 | MS.gene054623:intron | 45.0% |
| !! | CTGCTGGATTGGTTAACTCA+CGG | - | chr3.4:89277248-89277267 | MS.gene054623:intron | 45.0% |
| !!! | CCTTTTGAGAGCATCTTGGT+TGG | + | chr3.4:89277627-89277646 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr3.4:89277904-89277923 | MS.gene054623:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr3.4:89277923-89277904 | None:intergenic | 45.0% |
| AGGAACTCGAGGATAGTTGC+GGG | + | chr3.4:89276319-89276338 | None:intergenic | 50.0% | |
| AGTGGTAAGGGAGAAGTTGG+GGG | - | chr3.4:89276708-89276727 | MS.gene054623:CDS | 50.0% | |
| CAAAATGGGGTCTGCTGGAT+TGG | - | chr3.4:89277237-89277256 | MS.gene054623:intron | 50.0% | |
| GAACTCATGCAGGGACTTGT+TGG | - | chr3.4:89276621-89276640 | MS.gene054623:intron | 50.0% | |
| GCTGCACCTACTTATCTTCC+AGG | - | chr3.4:89276877-89276896 | MS.gene054623:intron | 50.0% | |
| GTTGCGATTCAAGGAACTCG+AGG | + | chr3.4:89276330-89276349 | None:intergenic | 50.0% | |
| TGGTGAATCTGCTAGGCTTG+CGG | - | chr3.4:89276363-89276382 | MS.gene054623:intron | 50.0% | |
| TGTGAGGGGATTTCAACTCG+CGG | + | chr3.4:89278040-89278059 | None:intergenic | 50.0% | |
| TTGCATGGATGCTCGACTCT+CGG | - | chr3.4:89276834-89276853 | MS.gene054623:intron | 50.0% | |
| !! | AGGGACTTGTTGGGATCAGT+GGG | - | chr3.4:89276631-89276650 | MS.gene054623:intron | 50.0% |
| !! | CTGGATTGGTTAACTCACGG+TGG | - | chr3.4:89277251-89277270 | MS.gene054623:intron | 50.0% |
| !! | GCATTGATGGTGGCGGTATA+AGG | - | chr3.4:89276284-89276303 | MS.gene054623:intron | 50.0% |
| !!! | AGCGTCCACTTTTTGCTGCT+AGG | - | chr3.4:89276461-89276480 | MS.gene054623:intron | 50.0% |
| !!! | GCGTCCACTTTTTGCTGCTA+GGG | - | chr3.4:89276462-89276481 | MS.gene054623:intron | 50.0% |
| CAGATTCAGCCTCCCACCTA+TGG | - | chr3.4:89276241-89276260 | MS.gene054623:CDS | 55.0% | |
| GAGAGTCGAGCATCCATGCA+AGG | + | chr3.4:89276835-89276854 | None:intergenic | 55.0% | |
| !! | CAGGGACTTGTTGGGATCAG+TGG | - | chr3.4:89276630-89276649 | MS.gene054623:intron | 55.0% |
| !! | GGGACTTGTTGGGATCAGTG+GGG | - | chr3.4:89276632-89276651 | MS.gene054623:intron | 55.0% |
| GGCAGCAAAATGGGGTCTGC+TGG | - | chr3.4:89277232-89277251 | MS.gene054623:intron | 60.0% | |
| ACTCGCGGAGCCTCCTCTCT+TGG | + | chr3.4:89278025-89278044 | None:intergenic | 65.0% | |
| CTCGCGGAGCCTCCTCTCTT+GGG | + | chr3.4:89278024-89278043 | None:intergenic | 65.0% | |
| ! | CTCGGGTGACGGCAGCAAGA+TGG | + | chr3.4:89277331-89277350 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89276214 | 89278079 | 89276214 | ID=MS.gene054623 |
| chr3.4 | mRNA | 89276214 | 89278079 | 89276214 | ID=MS.gene054623.t1;Parent=MS.gene054623 |
| chr3.4 | exon | 89277757 | 89278079 | 89277757 | ID=MS.gene054623.t1.exon1;Parent=MS.gene054623.t1 |
| chr3.4 | CDS | 89277757 | 89278079 | 89277757 | ID=cds.MS.gene054623.t1;Parent=MS.gene054623.t1 |
| chr3.4 | exon | 89277312 | 89277660 | 89277312 | ID=MS.gene054623.t1.exon2;Parent=MS.gene054623.t1 |
| chr3.4 | CDS | 89277312 | 89277660 | 89277312 | ID=cds.MS.gene054623.t1;Parent=MS.gene054623.t1 |
| chr3.4 | exon | 89276908 | 89277210 | 89276908 | ID=MS.gene054623.t1.exon3;Parent=MS.gene054623.t1 |
| chr3.4 | CDS | 89276908 | 89277210 | 89276908 | ID=cds.MS.gene054623.t1;Parent=MS.gene054623.t1 |
| chr3.4 | exon | 89276648 | 89276823 | 89276648 | ID=MS.gene054623.t1.exon4;Parent=MS.gene054623.t1 |
| chr3.4 | CDS | 89276648 | 89276823 | 89276648 | ID=cds.MS.gene054623.t1;Parent=MS.gene054623.t1 |
| chr3.4 | exon | 89276214 | 89276289 | 89276214 | ID=MS.gene054623.t1.exon5;Parent=MS.gene054623.t1 |
| chr3.4 | CDS | 89276214 | 89276289 | 89276214 | ID=cds.MS.gene054623.t1;Parent=MS.gene054623.t1 |
| Gene Sequence |
| Protein sequence |
