AlfalfaGEDB | MS.gene38871

M. sativa cultivar XinJiangDaYe / MS.gene38871

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01453.27 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38871.t1	AET02777.2	90.7	799	69	2	1	799	1	794	0.00E+00	1461

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38871.t1	Q9LW83	38.6	813	412	23	32	777	25	817	4.2e-134	480.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38871.t1	G7L9B8	90.7	799	69	2	1	799	1	794	0.0e+00	1461.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene01306	MS.gene38871	PPI
MS.gene01721	MS.gene38871	PPI
MS.gene02279	MS.gene38871	PPI
MS.gene026128	MS.gene38871	PPI
MS.gene052579	MS.gene38871	PPI
MS.gene065324	MS.gene38871	PPI
MS.gene33837	MS.gene38871	PPI
MS.gene38871	MS.gene84493	PPI
MS.gene38871	MS.gene75227	PPI
MS.gene38871	MS.gene84487	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene38871.t1	MTR_8g052050	91.206	796	65	2	1	796	1	791	1522
MS.gene38871.t1	MTR_8g052080	88.639	801	83	4	1	799	1	795	1459
MS.gene38871.t1	MTR_8g052420	80.100	799	129	6	1	796	1	772	1283
MS.gene38871.t1	MTR_8g052190	75.765	817	164	8	1	807	2	794	1281
MS.gene38871.t1	MTR_8g052190	75.672	818	164	9	1	807	2	795	1276
MS.gene38871.t1	MTR_8g052200	74.201	814	168	9	1	807	2	780	1216
MS.gene38871.t1	MTR_8g051600	75.434	806	162	10	1	796	1	780	1216
MS.gene38871.t1	MTR_8g052120	74.968	791	159	5	1	789	2	755	1215
MS.gene38871.t1	MTR_8g052513	76.662	797	143	9	1	789	1	762	1212
MS.gene38871.t1	MTR_8g052060	74.378	804	142	8	1	796	1	748	1206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38871.t1	AT3G16030	39.042	835	378	26	32	777	25	817	3.93e-161	490
MS.gene38871.t1	AT3G16030	39.378	772	383	20	74	777	84	838	2.49e-159	486
MS.gene38871.t1	AT1G11330	38.039	765	399	17	74	788	83	822	2.75e-155	474
MS.gene38871.t1	AT1G11330	37.877	763	401	16	74	788	83	820	6.24e-155	474
MS.gene38871.t1	AT3G16030	39.944	711	327	18	143	777	8	694	3.79e-150	457
MS.gene38871.t1	AT1G61610	36.603	836	444	23	29	802	27	838	2.36e-146	451
MS.gene38871.t1	AT1G11340	37.262	789	408	25	73	801	67	828	7.00e-146	450
MS.gene38871.t1	AT1G11300	37.230	787	389	26	74	799	76	818	1.00e-145	449
MS.gene38871.t1	AT1G65790	37.763	760	412	21	75	789	79	822	1.10e-144	447
MS.gene38871.t1	AT1G11300	37.161	775	391	23	74	799	76	803	1.25e-142	441

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Find 142 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAGAAACAAATTGTT+TGG	0.308610	8.4:-51575064	MS.gene38871:CDS
AAATCACCTCCGAATTCCCA+TGG	0.639305	8.4:-51573892	MS.gene38871:intron
AAATTCCTTCGATTATGTTC+AGG	0.450115	8.4:+51572476	None:intergenic
AAATTGTAGGGAACCTGGTG+AGG	0.588610	8.4:-51574139	MS.gene38871:CDS
AAATTGTTTGGATATACTTA+TGG	0.310580	8.4:-51575052	MS.gene38871:CDS
AACAGGACATAATTGGTCAT+TGG	0.393190	8.4:-51574574	MS.gene38871:CDS
AACTGCTGAATATATGTCAA+TGG	0.438952	8.4:+51574830	None:intergenic
AAGAAAAGTAAAAGGAAGCA+GGG	0.491639	8.4:-51573532	MS.gene38871:CDS
AAGAAGGTGAATTGAACATA+AGG	0.453064	8.4:-51574491	MS.gene38871:CDS
AAGATGAGAAGTTTATACGA+TGG	0.633455	8.4:-51574329	MS.gene38871:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCTTTCAAAAACATC+TGG	-	chr8.4:51573729-51573748	MS.gene38871:CDS	30.0%
AAATTCCTTCGATTATGTTC+AGG	+	chr8.4:51574252-51574271	None:intergenic	30.0%
AACTGCTGAATATATGTCAA+TGG	+	chr8.4:51571898-51571917	None:intergenic	30.0%
AAGAAAAGTAAAAGGAAGCA+GGG	-	chr8.4:51573193-51573212	MS.gene38871:intron	30.0%
AAGAAGGTGAATTGAACATA+AGG	-	chr8.4:51572234-51572253	MS.gene38871:intron	30.0%
AAGATGAGAAGTTTATACGA+TGG	-	chr8.4:51572396-51572415	MS.gene38871:CDS	30.0%
AAGTCTGATGTTTATAGCTT+TGG	-	chr8.4:51574582-51574601	MS.gene38871:CDS	30.0%
AATCATTCATAGAGACTTGA+AGG	-	chr8.4:51574312-51574331	MS.gene38871:CDS	30.0%
AATCCATAGTAAATACCAAC+AGG	-	chr8.4:51574413-51574432	MS.gene38871:CDS	30.0%
AATCCTGTTGGTATTTACTA+TGG	+	chr8.4:51574419-51574438	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	51571648	51575099	51571648	ID=MS.gene38871
chr8.4	mRNA	51571648	51575099	51571648	ID=MS.gene38871.t1;Parent=MS.gene38871
chr8.4	exon	51573893	51575099	51573893	ID=MS.gene38871.t1.exon1;Parent=MS.gene38871.t1
chr8.4	CDS	51573893	51575099	51573893	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1
chr8.4	exon	51573654	51573767	51573654	ID=MS.gene38871.t1.exon2;Parent=MS.gene38871.t1
chr8.4	CDS	51573654	51573767	51573654	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1
chr8.4	exon	51573360	51573556	51573360	ID=MS.gene38871.t1.exon3;Parent=MS.gene38871.t1
chr8.4	CDS	51573360	51573556	51573360	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1
chr8.4	exon	51572841	51573051	51572841	ID=MS.gene38871.t1.exon4;Parent=MS.gene38871.t1
chr8.4	CDS	51572841	51573051	51572841	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1
chr8.4	exon	51572298	51572535	51572298	ID=MS.gene38871.t1.exon5;Parent=MS.gene38871.t1
chr8.4	CDS	51572298	51572535	51572298	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1
chr8.4	exon	51572061	51572211	51572061	ID=MS.gene38871.t1.exon6;Parent=MS.gene38871.t1
chr8.4	CDS	51572061	51572211	51572061	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1
chr8.4	exon	51571648	51571983	51571648	ID=MS.gene38871.t1.exon7;Parent=MS.gene38871.t1
chr8.4	CDS	51571648	51571983	51571648	ID=cds.MS.gene38871.t1;Parent=MS.gene38871.t1

Gene Sequence

>MS.gene38871

ATGCTAAGCTTTAAAATAAAGAAACAAATTGTTTGGATATACTTATGGTTATGGTGGAGTACTACTAGTAGTATTTGTGTTAAAGCAACAAATGATAGTTTGAAGCCAGGTGATACATTGAATTCCAAATCCAAGCTGTGTTCTAAACAAGGCAAGTTTTGTTTGTATTTTGATAGCGAAGAAGCTCACTTGGTTATAAGTAGTGGTGTTGACGGCGCTGTAGTGTGGATGTACGATAGAAATCAACCCATTGACATATATTCAGCAGTTCTATCTTTAGACTACTCTGGTGTGCTCAAAATAGAATTTCAAAATAGGAATCTACCAGTTAGTATTTATTATTCGCCTCAACCAACCAACGACACTGTGGCCACTATATTAGATACCGGTAACTTTGTGCTTCAACAACTTCACCCAAACGGGACAAAGAGTATACTATGGCAGAGTTTTGATTATCCAACAGATAGTTTGGTCCCAACGATGAAGTTAGGCGTTAATCGAAAAACAGGACATAATTGGTCATTGGTTTCACGGTTGGCTCATTCGCTACCAACTCCAGGTGAACTTAGTCTTGAATGGGAACCAAAAGAAGGTGAATTGAACATAAGGAAAAGCGGCAAAGTGCATTGGAAAAGTGGAAAACTTAAAAGTAATGGAATATTCGAGAACATTCCAGCGAAAGTTCAAAGTATATATCGGTACATTATTGTGTCTAACAAGGATGAAGATTCTTTTGCTTTCGAAGTTAAAGATGAGAAGTTTATACGATGGTTCATATCCCCGAGGGGGAGGTTAATAAGTGATGCTGGAAGCACTGCTAATGCAAGTGCAGACATGTGTTATGGATATAAAAGTGATGAAGGGTGCCAAGTTGCAAATGCAGACATGTGTTATGGATATAATAGCGACGGAGGGTGCCAAAAATGGGAGGAAATACCAAATTGTAGGGAACCTGGTGAGGTTTTTCGGAAAAAGGTGGGAAGACCGAATAAAGACAATGCAACGACAGATGAACCTGCTAATGGTTACGATGATTGCAAGATGAGATGTTGGAGAAATTGTGATTGCTATGGATTCGAAGAATTATATAGTAATTTTACTGGATGTATATACTATTCTTGGAATTCGACACAAGACGTTGATTTGGAGATAAAGAATAACTTTTACGCCTTGGTAAAGCCAACAAAATCACCTCCGAATTCCCATGGTATGCAACATTTAGTATCATTTTAATTAGGTAGGTTGCAAGCAATTAGATAGAACTTTTTTAGTATGATTGAAATCAAACATCTAGTAACGAGTCCCGCACTTAGTTTTTGTTTTTGTGTATAGTCAATGCAGGTAAAAAGAGGATATGGATAGGTGCTGCAATCGCAGCTGCTTTACTCATATTATGCTCACTTATTCTATGCCTAGCAAAAAAGAAACAAAAATATGCACTTAAAGGTACTTGGACACTTTACAATAGCCTAGTCCCTATGCACTAAATCTAATCCCTCTATTTTCTATTTTCTATCTTTATCTTTTTTTATTTGTTATGTAGATAAGAAAAGTAAAAGGAAGCAGGGTAAGAGCATTGATTTGGCGGATTCCAATAAATCCTATGATATCAAAGATCTTGAGGATGAGTTCAAAGGACATGATATAAAAGTTTTTAGCTATAAATCGATTTTGGAAGCAACTATGGACTTTTCACCTGAAAACAAGTTAGGACAGGGAGGCTACGGACCCGTTTATAAGGTAACTTAAAACTATTGAAATTATACATTTATAATTAAGTTTTTTTTGTAAACAAGTTTTAAATTACTATCACAATTTACATATGACACAATCTTCATGTTGCAAACAAATGTTTATAATGTGGTAATATTTTTTTCATGGTTGGCGATTTTTGTTTTGGACAAAACATATATGCATTGTTTTTAGTACTCTTGGTATGGTTGTGAACTTAAGTATCCATTATCTCATCAAATGCATAATTGTATTTTAAGTTAAGAACCATACAAAAAGTATCTGAGGAAATACATCTAAATTTTTCATGACTTCAGGGAATCTTGGCAACAGGACAAGAAGTTGCCGTAAAAAGGCTTTCAAAAACATCTGGACAAGGAATTGTCGAATTCAAAAATGAATTGGTATTGATATGTGAACTTCAACACACAAATCTTGTACAACTACTTGGTTGTTGCGTTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCAAACAAAAGCCTGGATTTCTATATATTCGGTAAGAAATATGTTAAAGTCTATATTTGTATGCGATGTTTTTTTATGAAAATCATAAAATCGAGTTCATTATTATGTTATAATTAGAGCACAATTATAGCAAAAGTTTTGAGTTTTCTTAACTAACTTTTTTCATATTTATTGTGGATAGTTCGCTAAAATAGCGTGTTATCCTTACATCAAAAATAACCAAAATGGCATTTTTGTGACTCATTAGTTGGTCATAGAAAACTAAAATGGCATTTTTGTTTTCTGCTTTTGATTAGTATACATTTTAACATTAATTATTGTGTTTTCATTGAGAAGATTGTACAAGAAAAAAGTTACTAGACTGGAAGAAGCGCCTGAACATAATCGAAGGAATTTCTCAAGGATTACTCTATCTTCATAAGTATTCAAGACTCAAAATCATTCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACGCAAAAATTTCTGATTTCGGTATGGCAAGAATGTTCACACAACAGGAATCCATAGTAAATACCAACAGGATTGTTGGGACATAGTAAGTTTTCTAAGCTTTCTCTGTTTCTACCTTTTTATCGGTGATTACCCAAAAGAGTTGAGATTATTAACAAAATATTGGTGCAGTGGATACATGTCTCCAGAATATGCAATGGAAGGAATTTGTTCAACAAAGTCTGATGTTTATAGCTTTGGAGTGTTGCTTCTTGAAATTATTTGTGGAAGAAAAAACAATAGCTTTTATGATGTTGATCGCCCAATAAACCTAATAGGACATGTATGTAAAATAATTACATTGAGTTTATTTTTAAAATATACCATTCCTTGTTCCTAATTTGATTAAACTCCGAACAGGCATGGGAGCTATGGAATGATGGTGAGTATCTACAGTTACTGGATCCAACATTAAGTGACACATTTGTTCCCGATGAAGTGCAAAGGTGCATTCACATTGGTCTCTTATGTGTACAACAATATGCTAATGATCGACCTACGATGTCCGATGTTATATCAATGTTAACAAACAAATATGAACTTACAATCTTACCAAGAAGACCGGCATTCTATGTTAGAAGAGAGACCTTTGATGAGGAAACAACTTCTATAGAGCCAGACACTACTACAGAAATCACTTTCACATCGGCACCGACACCTATTCTACGACAGCAATTTCTACCTCATATGAATTAG

Protein sequence

>MS.gene38871.t1

MLSFKIKKQIVWIYLWLWWSTTSSICVKATNDSLKPGDTLNSKSKLCSKQGKFCLYFDSEEAHLVISSGVDGAVVWMYDRNQPIDIYSAVLSLDYSGVLKIEFQNRNLPVSIYYSPQPTNDTVATILDTGNFVLQQLHPNGTKSILWQSFDYPTDSLVPTMKLGVNRKTGHNWSLVSRLAHSLPTPGELSLEWEPKEGELNIRKSGKVHWKSGKLKSNGIFENIPAKVQSIYRYIIVSNKDEDSFAFEVKDEKFIRWFISPRGRLISDAGSTANASADMCYGYKSDEGCQVANADMCYGYNSDGGCQKWEEIPNCREPGEVFRKKVGRPNKDNATTDEPANGYDDCKMRCWRNCDCYGFEELYSNFTGCIYYSWNSTQDVDLEIKNNFYALVKPTKSPPNSHVNAGKKRIWIGAAIAAALLILCSLILCLAKKKQKYALKDKKSKRKQGKSIDLADSNKSYDIKDLEDEFKGHDIKVFSYKSILEATMDFSPENKLGQGGYGPVYKGILATGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCVHEEERILIYEYMPNKSLDFYIFDCTRKKLLDWKKRLNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNAKISDFGMARMFTQQESIVNTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLLLEIICGRKNNSFYDVDRPINLIGHAWELWNDGEYLQLLDPTLSDTFVPDEVQRCIHIGLLCVQQYANDRPTMSDVISMLTNKYELTILPRRPAFYVRRETFDEETTSIEPDTTTEITFTSAPTPILRQQFLPHMN