AlfalfaGEDB | MS.gene065324

M. sativa cultivar XinJiangDaYe / MS.gene065324

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF01453.27 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065324.t1	XP_024636255.1	93.5	821	44	4	1	820	1	813	0.00E+00	1566.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065324.t1	O81906	48.0	856	391	17	7	820	6	849	1.7e-215	750.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065324.t1	A0A072UKC3	92.3	834	44	4	1	820	1	828	0.0e+00	1565.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene032435	MS.gene065324	PPI
MS.gene032443	MS.gene065324	PPI
MS.gene032457	MS.gene065324	PPI
MS.gene035423	MS.gene065324	PPI
MS.gene035442	MS.gene065324	PPI
MS.gene035450	MS.gene065324	PPI
MS.gene065324	MS.gene041957	PPI
MS.gene065324	MS.gene43023	PPI
MS.gene065324	MS.gene36135	PPI
MS.gene065324	MS.gene016639	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065324.t1	MTR_4g040480	92.326	834	44	4	1	820	1	828	0.0	1582
MS.gene065324.t1	MTR_2g011190	75.505	841	181	7	2	820	1	838	0.0	1288
MS.gene065324.t1	MTR_2g011210	73.784	843	197	4	1	820	1	842	0.0	1267
MS.gene065324.t1	MTR_4g091570	58.788	825	285	18	30	815	258	1066	0.0	913
MS.gene065324.t1	MTR_4g091570	40.856	257	93	7	504	758	19	218	9.56e-42	165
MS.gene065324.t1	MTR_7g056510	44.286	840	398	20	22	820	12	822	0.0	650
MS.gene065324.t1	MTR_7g056680	45.281	837	411	20	8	820	6	819	0.0	644
MS.gene065324.t1	MTR_7g056680	45.520	837	414	18	8	820	6	824	0.0	643
MS.gene065324.t1	MTR_7g056680	45.107	838	407	21	8	820	6	815	0.0	643
MS.gene065324.t1	MTR_7g056680	45.054	839	411	20	8	820	6	820	0.0	642

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene065324.t1	AT4G21390	48.014	856	391	17	7	820	6	849	769
MS.gene065324.t1	AT1G61610	46.879	849	398	20	9	820	10	842	714
MS.gene065324.t1	AT4G21390	48.469	751	339	14	7	720	6	745	689
MS.gene065324.t1	AT1G11300	43.735	846	414	20	4	820	8	820	642
MS.gene065324.t1	AT1G61610	47.523	747	342	18	9	720	10	741	635
MS.gene065324.t1	AT1G11300	43.556	838	412	19	4	820	8	805	635
MS.gene065324.t1	AT1G11330	42.943	836	422	21	19	820	26	840	635
MS.gene065324.t1	AT1G11330	42.721	838	423	21	19	820	26	842	632
MS.gene065324.t1	AT1G11303	42.681	813	404	22	40	820	38	820	603
MS.gene065324.t1	AT1G11340	41.262	824	423	18	39	820	29	833	597

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Find 162 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCAACATAGAAATC+TGG	0.385660	4.4:+63770986	MS.gene065324:CDS
AAAATGGAGAAGTGGTTATT+GGG	0.411885	4.4:+63769461	MS.gene065324:CDS
AAATGATGTCACAATCACAA+TGG	0.665212	4.4:+63772286	MS.gene065324:CDS
AAATTGGGAATTGATCCTGT+AGG	0.604856	4.4:+63769399	MS.gene065324:CDS
AACACAACTTCGGACATCTT+TGG	0.322554	4.4:-63772155	None:intergenic
AACACTCCAATCAATGGCAA+CGG	0.627447	4.4:+63769090	MS.gene065324:CDS
AACAGAGAGTCTCCCAAGAA+TGG	0.523374	4.4:+63772251	MS.gene065324:CDS
AACTATGTCATGGGTTTCTT+TGG	0.214451	4.4:+63768985	MS.gene065324:CDS
AACTCTTCTTCTCGTTATGT+CGG	0.520569	4.4:+63769015	MS.gene065324:CDS
AACTTGTGATGCGTCAGATT+CGG	0.338874	4.4:+63769746	MS.gene065324:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTCTTCCTATTCAC+AGG	-	chr4.4:63769333-63769352	None:intergenic	30.0%
AAAAATATCTGACTTTGGCT+TGG	+	chr4.4:63771373-63771392	MS.gene065324:CDS	30.0%
AAAAATGGAGAAGTGGTTAT+TGG	+	chr4.4:63769460-63769479	MS.gene065324:CDS	30.0%
AAAACTGAAAAATGGAAGCT+CGG	-	chr4.4:63770696-63770715	None:intergenic	30.0%
AAAATGGAGAAGTGGTTATT+GGG	+	chr4.4:63769461-63769480	MS.gene065324:CDS	30.0%
AAATGATGTCACAATCACAA+TGG	+	chr4.4:63772286-63772305	MS.gene065324:CDS	30.0%
AATAGAAACACTCCAATCAA+TGG	+	chr4.4:63769084-63769103	MS.gene065324:CDS	30.0%
AATGTAGAAAGAAAATAGGC+AGG	-	chr4.4:63771122-63771141	None:intergenic	30.0%
AATTTATGGTTCCCTATTGA+AGG	-	chr4.4:63769384-63769403	None:intergenic	30.0%
AGAAATCTGGTTAGACTAAT+GGG	+	chr4.4:63770999-63771018	MS.gene065324:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	63768838	63772322	63768838	ID=MS.gene065324
chr4.4	mRNA	63768838	63772322	63768838	ID=MS.gene065324.t1;Parent=MS.gene065324
chr4.4	exon	63768838	63770110	63768838	ID=MS.gene065324.t1.exon1;Parent=MS.gene065324.t1
chr4.4	CDS	63768838	63770110	63768838	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1
chr4.4	exon	63770311	63770395	63770311	ID=MS.gene065324.t1.exon2;Parent=MS.gene065324.t1
chr4.4	CDS	63770311	63770395	63770311	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1
chr4.4	exon	63770592	63770793	63770592	ID=MS.gene065324.t1.exon3;Parent=MS.gene065324.t1
chr4.4	CDS	63770592	63770793	63770592	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1
chr4.4	exon	63770888	63771098	63770888	ID=MS.gene065324.t1.exon4;Parent=MS.gene065324.t1
chr4.4	CDS	63770888	63771098	63770888	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1
chr4.4	exon	63771216	63771453	63771216	ID=MS.gene065324.t1.exon5;Parent=MS.gene065324.t1
chr4.4	CDS	63771216	63771453	63771216	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1
chr4.4	exon	63771547	63771694	63771547	ID=MS.gene065324.t1.exon6;Parent=MS.gene065324.t1
chr4.4	CDS	63771547	63771694	63771547	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1
chr4.4	exon	63772017	63772322	63772017	ID=MS.gene065324.t1.exon7;Parent=MS.gene065324.t1
chr4.4	CDS	63772017	63772322	63772017	ID=cds.MS.gene065324.t1;Parent=MS.gene065324.t1

Gene Sequence

>MS.gene065324

ATGATGCTCTCAACATACAAATGCATTGTTTCTTTTACGTTGTTGTTCTATTTCTTGTGTTTCTGTCCAGAGTTGTCACAAGGTGGTATCAAACAAGGTGATGTTGTAAGAGATCAAGAAGGTGACGTTTTATTCTCAGATGGTTTCAACTATGTCATGGGTTTCTTTGGTTTCGATAACTCTTCTTCTCGTTATGTCGGTATTTGGTACTATAACATTCCAGGACCGCAAGTTATTTGGGTTGCAAATAGAAACACTCCAATCAATGGCAACGGTGGTTCTTTCACTATAGCCGAAAACGGTAATTTGGTTATCCTTGATGAAAACAAGAATCAAATATGGTCGACGAATGTTTCTATGGGTCAAAATAATACGAATAACTATGAAGCTGTTCTTAGAGATGATGGTAATCTTATTCTTGCGAATGAGAATGCGGTGTTATGGGAAAGCTTTGAGAATCCATGTGATACTTATGTACCTGGTATGAAAGTTCCTGTGAATAGGAAGAGTTTTTTCTTTACTTCATGGAAATCAAGTACAGATCCTTCAATAGGGAACCATAAATTGGGAATTGATCCTGTAGGGTTACCACCACAGGTATTTGTTTGGGAAGGGGAGAGAAAAAAATGGAGAAGTGGTTATTGGGATGGTAGGGTTTTTACTGGTGTTGATACGAAAAGTAGTTTTCTTCATGGTTTTATTTTGAATTATGATAGTAATGGAGATAGGTATTTTGTTTATAATGATAATGAGTGGAAGTTGAATGGTAATAGTTCAGTGAGGTTTCAGATTGGTTGGGATGGTTATGAAAGAGAGCTTATATGGAATGAAACTGAGAAATATTGGAGTGTGAATCAAAAGGGGCCTCATAATCAGTGTGAATTTTATAACTATTGTGGCGATTTTGCAACTTGTGATGCGTCAGATTCGGGTTCGGCTATTTGTAGTTGCTTACAAGGGTTTGAACTGAAGGATAAGGAGAATTTGTCAAGTGGATGTACAAGGAAGACAGCATTGAAGGGTGATCAGAGAAGTGATGGTTTTGACGAGGATGGTTTCATGGAGCGTACGAATATGAAGTTACCCGACTTTGCACGTGTGGTTGATACTAAGGATTGTGAAGGTAATTGTTTGGAGAATGCTTCTTGTACTGCTTATGCAGAAGTAACTGGAATTGGTTGTATGGTTTGGCATGGAGATTTGGTTGATGTTCAACACTTAGGACGCGATGAAGGAAATACGTTATATATTCGTCTTGCTCGTTTGGATTTAGGTAAGATAATTCAAAGGGTCCCTTTGTCTTTGTTTCCATGTATATGGATCTTCAATTATAATTTTCATTTATCACTAGTACTATTTTTTCATGTATGGTTCTTGACTAACTCTTTCAATTGATAGTACATTATTTTTTTTTTTTTTTTTATGATTGTTGTGTTATGATGATATGTATAATATCTATGTATCCAAATACAGGCCATGGAGGGAAAATGAACAGGACTATGATTGTGATAATATCAACTGCTGTAACAGGGTTAATCTGCCTAGGAATCTTTGTATTGTTGGTATGGAGATGTATGAAAAATCACAAAGGTGAAATACTCATTCATATTTATCAAACCTATTTTTTTCCTATTAGATATTATTGATAAAGATGTAACTGTAATATTCTTTTTTCTTTTTTCTTTTTTTTATATATTAACATGTGTATATTTGTTTTCCTTTTCTTTTTTGTTTTCAGCTTCAAAATACAAAAGTATTCAAATAATACCTGTTTATGCACGCGATAGCAGAGAGACGTCATCAGAATTTTCAGGATCACTTGCACTTAGTTTGAAAAGTAATCAACTAAGCGGAGCCGAGCTTCCATTTTTCAGTTTTAGTAGCATGTCAGCAGCTACCAACAATTTTTCTCAAGCAAATAAGCTTGGACAAGGCGGATTCGGTCCTGTGTACAAGGTGATAAGAAAATGCTTATATATTTAAGGTTATCTTTCATGTAAAGAAGTCCTAATAAAATGATCTAATGAAAATTTGTTATTCCGTTTATCAGGGAAAGCTTCCAACCGGAGAAGAAATAGCAGTCAAGAGGCTTTCTAGACCGTTCGGACAAGGTTTAGACGAGTTCAAGAATGAAATGAGGTTGATTGCAAAACTTCAACATAGAAATCTGGTTAGACTAATGGGATGTTCTATTGAAGGAGATGAAAAGTTGCTTGTATACGAATTCATGCCGAACAAAAGCTTGGATTACTTTTTATTCGGTGTGTTTCTTCACATTAATCCTGCCTATTTTCTTTCTACATTTTTATCATAAGTATGAAAAGAGATTATAAGTACTTCTTTTAACTAATTTGAATTTTGTTGCTAACATCACACAGATCCTATCAAGAAAGCACAATTAAACTGGGCAAGACGTTATGAAATCATTGAAGGCATTGCAAGAGGACTACTTTATCTGCATCGTGATTCAAGACTCAGAATAATTCATCGAGATCTAAAACCAAGTAACATTTTGTTAGATGAAAGCATGAATCCAAAAATATCTGACTTTGGCTTGGCCCGGAGATTTGGTGGAAACCAGAATGAATCCAATACAACCAGAGTCGTTGGTACATAGTAAGTATACTTCGGTTTTGTTTTTAAGCTCATTCAGCCCACTTGTTCATTCTTACTTGAAGTTGACTAATCTCAACTAACTCTATTTTTCAGTGGTTATATGTCTCCTGAATATGCCATGCAAGGCGTATTATCAGTCAAGGCAGATGTATATAGTTTTGGCGTATTGCTTCTAGAGATTGTGAGTGGTCACAAAAACACTAGCTTTCGTCATTCAGATGATTCAAGTCTCATAGGATATGTGAGTATTTCCTTTGGCGCATCAATTTTTTTAATTTATTTCAACTTGCATAAATATTTTTTTCTTTTGTCGTAAACAATTTATCAAAAGTAGTTTTTACTAGCAAATCACCAATTGAATCCTTGAAATTGAAGGCGTCACATCACATATTTTGGTCCTGAAAATATCAAAATTTTAAAATAATCTCTAAATTTGAAAATCTTTTATCGCATTGGTCCTCGAGTCCTTTAAAATTAAATTGATTTAGATGGACTAATGCTAAGCTAATTGAAATGCGAAAATCTAATTTATTTTTTATTTTTTTGTGATGGAATGGTTCTAGGCATGGCATCTATGGAATACAAAGAGATCAAAGGAACTTGTCGATGCTTGCATTAGTGATTTGACTCCCAACAATGATGTTATTAATAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTTAGCATCTCGTAGACCAAAGATGTCCGAAGTTGTGTTGATGCTTGAGAGTAAAGCAATTACTCTTCCCTTACCTATGCAGCCTTTGATTACTTCCATCAAAAGAACGGTGAACAGAGAGTCTCCCAAGAATGGTGTTGATGATTCAAATGATGTCACAATCACAATGGTAGAAGGGAGATAG

Protein sequence

>MS.gene065324.t1

MMLSTYKCIVSFTLLFYFLCFCPELSQGGIKQGDVVRDQEGDVLFSDGFNYVMGFFGFDNSSSRYVGIWYYNIPGPQVIWVANRNTPINGNGGSFTIAENGNLVILDENKNQIWSTNVSMGQNNTNNYEAVLRDDGNLILANENAVLWESFENPCDTYVPGMKVPVNRKSFFFTSWKSSTDPSIGNHKLGIDPVGLPPQVFVWEGERKKWRSGYWDGRVFTGVDTKSSFLHGFILNYDSNGDRYFVYNDNEWKLNGNSSVRFQIGWDGYERELIWNETEKYWSVNQKGPHNQCEFYNYCGDFATCDASDSGSAICSCLQGFELKDKENLSSGCTRKTALKGDQRSDGFDEDGFMERTNMKLPDFARVVDTKDCEGNCLENASCTAYAEVTGIGCMVWHGDLVDVQHLGRDEGNTLYIRLARLDLGHGGKMNRTMIVIISTAVTGLICLGIFVFIQIIPVYARDSRETSSEFSGSLALSLKSNQLSGAELPFFSFSSMSAATNNFSQANKLGQGGFGPVYKGKLPTGEEIAVKRLSRPFGQGLDEFKNEMRLIAKLQHRNLVRLMGCSIEGDEKLLVYEFMPNKSLDYFLFDPIKKAQLNWARRYEIIEGIARGLLYLHRDSRLRIIHRDLKPSNILLDESMNPKISDFGLARRFGGNQNESNTTRVVGTYGYMSPEYAMQGVLSVKADVYSFGVLLLEIVSGHKNTSFRHSDDSSLIGYAWHLWNTKRSKELVDACISDLTPNNDVINRCIQIGMLCVQDLASRRPKMSEVVLMLESKAITLPLPMQPLITSIKRTVNRESPKNGVDDSNDVTITMVEGR