Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39025.t1 | XP_003624968.2 | 98.6 | 218 | 3 | 0 | 1 | 218 | 143 | 360 | 1.50E-122 | 448.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39025.t1 | Q9UNI6 | 38.0 | 213 | 121 | 2 | 2 | 214 | 124 | 325 | 1.4e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39025.t1 | Q2HSZ6 | 98.6 | 218 | 3 | 0 | 1 | 218 | 143 | 360 | 1.1e-122 | 448.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056283 | MS.gene39025 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene057687 | MS.gene39025 | 0.809297 | 2.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCATTAGACTTGTTAAA+AGG | 0.260913 | 7.4:-19548588 | None:intergenic |
| CCCGTTTGGGATACTTCAAT+TGG | 0.323463 | 7.4:+19549010 | MS.gene39025:CDS |
| CCGTAGAGGCTCAATAAATA+TGG | 0.345431 | 7.4:-19548622 | None:intergenic |
| TGCTCATTGTGATGCCCGTT+TGG | 0.347710 | 7.4:+19548996 | MS.gene39025:CDS |
| CTGCTCTAGAAAGCCATCAT+TGG | 0.357821 | 7.4:-19546501 | None:intergenic |
| TGCTCTAGAAAGCCATCATT+GGG | 0.368300 | 7.4:-19546500 | None:intergenic |
| GTTGAAAATGTTTGAGGAGA+TGG | 0.370927 | 7.4:+19546616 | MS.gene39025:intron |
| GGGGAGGGTGAGACATCCTT+TGG | 0.382903 | 7.4:+19548540 | MS.gene39025:CDS |
| CCTATAGTTGAAAATGTTTG+AGG | 0.385792 | 7.4:+19546610 | MS.gene39025:intron |
| TCAGGTGAGAATCATTTCTC+AGG | 0.388064 | 7.4:+19548348 | MS.gene39025:intron |
| AGACGAAAGCGCTTGTATAC+AGG | 0.393097 | 7.4:-19546662 | None:intergenic |
| TTGCAGTGCAGCGGTTATTA+CGG | 0.394423 | 7.4:+19546110 | None:intergenic |
| GTTTGAGGAGATGGGTTTCA+AGG | 0.423864 | 7.4:+19546625 | MS.gene39025:CDS |
| TCTAAGCTTGGTGCAGATCC+TGG | 0.425042 | 7.4:+19548387 | MS.gene39025:CDS |
| TTGAAAATGTTTGAGGAGAT+GGG | 0.427324 | 7.4:+19546617 | MS.gene39025:CDS |
| AGCGAAAATTTGTCACTAGA+AGG | 0.437993 | 7.4:+19546147 | MS.gene39025:CDS |
| CATGTCGTAGATCATATTCC+TGG | 0.438405 | 7.4:+19548519 | MS.gene39025:CDS |
| TACAATGCAGCTGTGGAAGC+TGG | 0.443294 | 7.4:+19549040 | MS.gene39025:CDS |
| GCTCATTGTGATGCCCGTTT+GGG | 0.448209 | 7.4:+19548997 | MS.gene39025:CDS |
| ACCTCTGAAGAAGTTTCAAC+AGG | 0.461123 | 7.4:-19548414 | None:intergenic |
| CCCAATTGAAGTATCCCAAA+CGG | 0.465316 | 7.4:-19549011 | None:intergenic |
| GAAGTTTCAACAGGCATGCC+AGG | 0.467127 | 7.4:-19548405 | None:intergenic |
| CCATATTTATTGAGCCTCTA+CGG | 0.478853 | 7.4:+19548622 | MS.gene39025:CDS |
| TTGGGATACTTCAATTGGGC+AGG | 0.489311 | 7.4:+19549015 | MS.gene39025:CDS |
| AGCTCTGCTTTAACGATGCA+AGG | 0.503140 | 7.4:-19546463 | None:intergenic |
| AGGGTGAGACATCCTTTGGC+TGG | 0.503541 | 7.4:+19548544 | MS.gene39025:CDS |
| GGCTGGCACAAGCGGAAAAG+TGG | 0.513620 | 7.4:+19548561 | MS.gene39025:CDS |
| CAATGATGGCTTTCTAGAGC+AGG | 0.514418 | 7.4:+19546502 | MS.gene39025:CDS |
| CCAATTGAAGTATCCCAAAC+GGG | 0.519074 | 7.4:-19549010 | None:intergenic |
| GAATTTGTTTGCCCCAATGA+TGG | 0.519376 | 7.4:+19546488 | MS.gene39025:CDS |
| TGTTGAAACTTCTTCAGAGG+TGG | 0.520731 | 7.4:+19548416 | MS.gene39025:CDS |
| CCGTTTGGGATACTTCAATT+GGG | 0.524019 | 7.4:+19549011 | MS.gene39025:CDS |
| TTTCCGCTTGTGCCAGCCAA+AGG | 0.528514 | 7.4:-19548556 | None:intergenic |
| AGTTGAGGAAGGCGCGTTGG+AGG | 0.531978 | 7.4:+19548960 | MS.gene39025:intron |
| CATCCTTTGGCTGGCACAAG+CGG | 0.533168 | 7.4:+19548553 | MS.gene39025:CDS |
| CTCAGTTGAGGAAGGCGCGT+TGG | 0.536953 | 7.4:+19548957 | MS.gene39025:intron |
| CAGGTGAGAATCATTTCTCA+GGG | 0.543545 | 7.4:+19548349 | MS.gene39025:intron |
| AAGGATGTCTCACCCTCCCC+AGG | 0.546506 | 7.4:-19548537 | None:intergenic |
| AGGATAGACAGTTCTAAGCT+TGG | 0.546865 | 7.4:+19548375 | MS.gene39025:CDS |
| ATGTCGTAGATCATATTCCT+GGG | 0.548003 | 7.4:+19548520 | MS.gene39025:CDS |
| GTGGTGCAACAAGACTTACA+TGG | 0.552624 | 7.4:-19549109 | None:intergenic |
| GACGAAAGCGCTTGTATACA+GGG | 0.552682 | 7.4:-19546661 | None:intergenic |
| CACTTCTTGCAGCGATATGT+AGG | 0.556043 | 7.4:-19548471 | None:intergenic |
| CCTCTACGGTGGATGAAAGA+TGG | 0.560281 | 7.4:+19548636 | MS.gene39025:CDS |
| GCCTGTTGAAACTTCTTCAG+AGG | 0.563895 | 7.4:+19548413 | MS.gene39025:CDS |
| GTTGAAACTTCTTCAGAGGT+GGG | 0.564173 | 7.4:+19548417 | MS.gene39025:CDS |
| GTTGAGGAAGGCGCGTTGGA+GGG | 0.574211 | 7.4:+19548961 | MS.gene39025:intron |
| TCTTGTCACTCAGTTGAGGA+AGG | 0.575185 | 7.4:+19548949 | MS.gene39025:intron |
| AGAATCATTTCTCAGGGTCG+AGG | 0.589151 | 7.4:+19548355 | MS.gene39025:CDS |
| TGGTGCAACAAGACTTACAT+GGG | 0.594553 | 7.4:-19549108 | None:intergenic |
| CGTAGATCATATTCCTGGGG+AGG | 0.603657 | 7.4:+19548524 | MS.gene39025:CDS |
| ACGGGCATCACAATGAGCAC+AGG | 0.619374 | 7.4:-19548992 | None:intergenic |
| CCATCTTTCATCCACCGTAG+AGG | 0.619573 | 7.4:-19548636 | None:intergenic |
| GTAGATCATATTCCTGGGGA+GGG | 0.623117 | 7.4:+19548525 | MS.gene39025:CDS |
| GCTCTGCTTTAACGATGCAA+GGG | 0.645098 | 7.4:-19546462 | None:intergenic |
| GCAGGCATACAATGCAGCTG+TGG | 0.649537 | 7.4:+19549033 | MS.gene39025:CDS |
| TATTTATTGAGCCTCTACGG+TGG | 0.683041 | 7.4:+19548625 | MS.gene39025:CDS |
| CTTGCAATGCAACAATACGA+CGG | 0.704891 | 7.4:-19548494 | None:intergenic |
| TGTCGTAGATCATATTCCTG+GGG | 0.712970 | 7.4:+19548521 | MS.gene39025:CDS |
| GCTCTAGAAAGCCATCATTG+GGG | 0.722213 | 7.4:-19546499 | None:intergenic |
| GGTGCAACAAGACTTACATG+GGG | 0.765081 | 7.4:-19549107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAAAATATTATAAAAGA+CGG | - | chr7.4:19548781-19548800 | None:intergenic | 10.0% |
| !! | AAAGAAAAAAAACTTATGAA+AGG | - | chr7.4:19547443-19547462 | None:intergenic | 15.0% |
| !! | AAGTTAACATAAAAAAACAT+AGG | - | chr7.4:19546873-19546892 | None:intergenic | 15.0% |
| !! | TTATAAACAAAAAAGTTCTT+CGG | - | chr7.4:19546349-19546368 | None:intergenic | 15.0% |
| !!! | ACTTTCAAAAAACTTTTAAA+AGG | - | chr7.4:19546965-19546984 | None:intergenic | 15.0% |
| !!! | ACTTTTATTCATAAATACAA+AGG | - | chr7.4:19548159-19548178 | None:intergenic | 15.0% |
| !!! | GTACAATTAATCATTTTTTA+AGG | - | chr7.4:19547727-19547746 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTCTTCTTTTTT+CGG | + | chr7.4:19546416-19546435 | MS.gene39025:intron | 15.0% |
| !!! | TTTAAAAGTTTTTTGAAAGT+AGG | + | chr7.4:19546965-19546984 | MS.gene39025:intron | 15.0% |
| !! | ACAAATGACATAAAAGTAAA+AGG | - | chr7.4:19546814-19546833 | None:intergenic | 20.0% |
| !! | AGTGAAAAAAATAAGAAGAA+AGG | - | chr7.4:19546242-19546261 | None:intergenic | 20.0% |
| !! | TGATAATTATTTGAATCCTT+TGG | + | chr7.4:19548099-19548118 | MS.gene39025:intron | 20.0% |
| !!! | CAAAAAACTTTTAAAAGGAA+TGG | - | chr7.4:19546960-19546979 | None:intergenic | 20.0% |
| !!! | CATTTTTTAAGGTTTTCTTT+GGG | - | chr7.4:19547716-19547735 | None:intergenic | 20.0% |
| !!! | CGTTTTAAAATTAACTACAT+TGG | - | chr7.4:19547800-19547819 | None:intergenic | 20.0% |
| !!! | CTATTAATACATTTTAGTCA+AGG | - | chr7.4:19547774-19547793 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTCTTTCTTTCAT+TGG | + | chr7.4:19547450-19547469 | MS.gene39025:intron | 20.0% |
| !!! | TCATTTTTTAAGGTTTTCTT+TGG | - | chr7.4:19547717-19547736 | None:intergenic | 20.0% |
| !!! | TTTTAGTGTTAGTGAAAAAT+AGG | + | chr7.4:19547238-19547257 | MS.gene39025:intron | 20.0% |
| ! | AAAAAACACATTGTCTGAAA+AGG | - | chr7.4:19546912-19546931 | None:intergenic | 25.0% |
| ! | AAAAAACATAGGAAGAGAAA+AGG | - | chr7.4:19546862-19546881 | None:intergenic | 25.0% |
| ! | AAAACGAATTAACGTAGATT+TGG | + | chr7.4:19547814-19547833 | MS.gene39025:intron | 25.0% |
| ! | AAGTCAAATTCAATTCTTGT+TGG | - | chr7.4:19548704-19548723 | None:intergenic | 25.0% |
| ! | AATGTTTATGTTTGACAATG+AGG | + | chr7.4:19546557-19546576 | MS.gene39025:intron | 25.0% |
| ! | CAAAAGATAAATTTGTGCTT+TGG | + | chr7.4:19547282-19547301 | MS.gene39025:intron | 25.0% |
| ! | CGCATAAATATGCATAAAAA+TGG | + | chr7.4:19548903-19548922 | MS.gene39025:intron | 25.0% |
| ! | GAAAAAAAACTTATGAAAGG+TGG | - | chr7.4:19547440-19547459 | None:intergenic | 25.0% |
| ! | GAAACTAAGAAAATGCATTA+GGG | + | chr7.4:19547494-19547513 | MS.gene39025:intron | 25.0% |
| ! | GTTGAGATACAAATAAATAG+TGG | + | chr7.4:19547836-19547855 | MS.gene39025:intron | 25.0% |
| ! | TATATGATAATATGAGCATG+AGG | - | chr7.4:19546738-19546757 | None:intergenic | 25.0% |
| ! | TCATGCTCATATTATCATAT+AGG | + | chr7.4:19546737-19546756 | MS.gene39025:intron | 25.0% |
| !! | ATACGAGTATCTTTTCAAAA+TGG | + | chr7.4:19546322-19546341 | MS.gene39025:intron | 25.0% |
| !! | ATACTTTGTTTAAAGTCTTC+AGG | + | chr7.4:19546190-19546209 | MS.gene39025:intron | 25.0% |
| !! | GCATATTACCAAAATTTTCT+TGG | + | chr7.4:19548808-19548827 | MS.gene39025:intron | 25.0% |
| !! | TAATTTGTAGCAATAGATTC+CGG | + | chr7.4:19548129-19548148 | MS.gene39025:intron | 25.0% |
| !! | TACGAGTATCTTTTCAAAAT+GGG | + | chr7.4:19546323-19546342 | MS.gene39025:intron | 25.0% |
| !! | TACTTTGTTTAAAGTCTTCA+GGG | + | chr7.4:19546191-19546210 | MS.gene39025:intron | 25.0% |
| !! | TTAAAGTTATGATAGTGCTT+AGG | + | chr7.4:19546289-19546308 | MS.gene39025:intron | 25.0% |
| !! | TTAATGCTCCAAGAAAATTT+TGG | - | chr7.4:19548819-19548838 | None:intergenic | 25.0% |
| !! | TTTTCTTAGTTTCCCAATAT+CGG | - | chr7.4:19547487-19547506 | None:intergenic | 25.0% |
| !!! | AATGTCCACTTTAGAATATT+CGG | - | chr7.4:19547922-19547941 | None:intergenic | 25.0% |
| !!! | ATTTTCGCTTTTCATCAAAT+AGG | - | chr7.4:19546136-19546155 | None:intergenic | 25.0% |
| !!! | GATTCATTAGACTTGTTAAA+AGG | - | chr7.4:19548591-19548610 | None:intergenic | 25.0% |
| !!! | TCAAGGAAGATTATTTTATC+TGG | - | chr7.4:19547757-19547776 | None:intergenic | 25.0% |
| !!! | TTTTTGGGGAGTATTTTTTA+AGG | - | chr7.4:19547621-19547640 | None:intergenic | 25.0% |
| AATGATTCTCACCTGAAAAA+AGG | - | chr7.4:19548344-19548363 | None:intergenic | 30.0% | |
| AATGTGATGATTGTGTACTA+TGG | + | chr7.4:19548262-19548281 | MS.gene39025:intron | 30.0% | |
| AGTGTTAGTGAAAAATAGGT+GGG | + | chr7.4:19547242-19547261 | MS.gene39025:intron | 30.0% | |
| AGTTTGATATACAACAACCA+TGG | - | chr7.4:19548187-19548206 | None:intergenic | 30.0% | |
| ATAGTACACAATCATCACAT+TGG | - | chr7.4:19548263-19548282 | None:intergenic | 30.0% | |
| ATGAATAAAAGTCCTTACCA+TGG | + | chr7.4:19548167-19548186 | MS.gene39025:intron | 30.0% | |
| ATGTGATGATTGTGTACTAT+GGG | + | chr7.4:19548263-19548282 | MS.gene39025:intron | 30.0% | |
| CCTATAGTTGAAAATGTTTG+AGG | + | chr7.4:19546610-19546629 | MS.gene39025:intron | 30.0% | |
| CTAGTAATTTATGTCATCTG+AGG | + | chr7.4:19548304-19548323 | MS.gene39025:intron | 30.0% | |
| GACAACATTAGTACAGATTT+GGG | - | chr7.4:19547022-19547041 | None:intergenic | 30.0% | |
| GGAAACTAAGAAAATGCATT+AGG | + | chr7.4:19547493-19547512 | MS.gene39025:intron | 30.0% | |
| GTACTAATGTTGTCAAATAG+TGG | + | chr7.4:19547028-19547047 | MS.gene39025:intron | 30.0% | |
| TACAAATTAGACACTACCAA+AGG | - | chr7.4:19548118-19548137 | None:intergenic | 30.0% | |
| TAGTGTTAGTGAAAAATAGG+TGG | + | chr7.4:19547241-19547260 | MS.gene39025:intron | 30.0% | |
| TCGTCTAAAAATACTAGGTA+TGG | + | chr7.4:19546679-19546698 | MS.gene39025:intron | 30.0% | |
| TGACAACATTAGTACAGATT+TGG | - | chr7.4:19547023-19547042 | None:intergenic | 30.0% | |
| TGCTCATATTATCATATAGG+TGG | + | chr7.4:19546740-19546759 | MS.gene39025:intron | 30.0% | |
| TTGAAAATGTTTGAGGAGAT+GGG | + | chr7.4:19546617-19546636 | MS.gene39025:CDS | 30.0% | |
| TTTATGCATATTTATGCGCA+CGG | - | chr7.4:19548901-19548920 | None:intergenic | 30.0% | |
| ! | AGTGACAACTTGTATTGTTT+TGG | + | chr7.4:19546768-19546787 | MS.gene39025:intron | 30.0% |
| ! | CCTCAAACATTTTCAACTAT+AGG | - | chr7.4:19546613-19546632 | None:intergenic | 30.0% |
| ! | CTTTTCAACTACACAAAAGT+CGG | + | chr7.4:19549073-19549092 | MS.gene39025:CDS | 30.0% |
| ! | GAATGTTTTCTATGTTTGAG+TGG | + | chr7.4:19548840-19548859 | MS.gene39025:intron | 30.0% |
| ! | TTTTCAACTACACAAAAGTC+GGG | + | chr7.4:19549074-19549093 | MS.gene39025:CDS | 30.0% |
| !! | ACTAAATAATGAGAGCATCT+TGG | - | chr7.4:19548743-19548762 | None:intergenic | 30.0% |
| !! | TGGGAGTATCAAATTAAATC+AGG | + | chr7.4:19547955-19547974 | MS.gene39025:intron | 30.0% |
| !! | TGTTTAAGAGCTAGCTTTAA+CGG | + | chr7.4:19547113-19547132 | MS.gene39025:intron | 30.0% |
| !!! | AGTTTTGAGGATTGAAGAAT+GGG | + | chr7.4:19547384-19547403 | MS.gene39025:intron | 30.0% |
| !!! | GAAATATCTCTCCTTTTTTC+AGG | + | chr7.4:19548330-19548349 | MS.gene39025:intron | 30.0% |
| AATGCATTAGGGAATAGCTT+TGG | + | chr7.4:19547505-19547524 | MS.gene39025:intron | 35.0% | |
| AGCGAAAATTTGTCACTAGA+AGG | + | chr7.4:19546147-19546166 | MS.gene39025:CDS | 35.0% | |
| AGGATTGAAGAATGGGAAAA+GGG | + | chr7.4:19547391-19547410 | MS.gene39025:intron | 35.0% | |
| ATGTCGTAGATCATATTCCT+GGG | + | chr7.4:19548520-19548539 | MS.gene39025:CDS | 35.0% | |
| CCAAAGAACCTTGTATATAG+AGG | - | chr7.4:19548869-19548888 | None:intergenic | 35.0% | |
| CCATATTTATTGAGCCTCTA+CGG | + | chr7.4:19548622-19548641 | MS.gene39025:CDS | 35.0% | |
| CCTCTATATACAAGGTTCTT+TGG | + | chr7.4:19548866-19548885 | MS.gene39025:intron | 35.0% | |
| CGCTTTCGTCTAAAAATACT+AGG | + | chr7.4:19546674-19546693 | MS.gene39025:CDS | 35.0% | |
| GACATTTAGTATGAGATGCT+GGG | + | chr7.4:19547936-19547955 | MS.gene39025:intron | 35.0% | |
| GATATACAACAACCATGGTA+AGG | - | chr7.4:19548182-19548201 | None:intergenic | 35.0% | |
| GTAGGAATCATGTTAGATGT+TGG | + | chr7.4:19546983-19547002 | MS.gene39025:intron | 35.0% | |
| GTGTTAGTGAAAAATAGGTG+GGG | + | chr7.4:19547243-19547262 | MS.gene39025:intron | 35.0% | |
| GTTGAAAATGTTTGAGGAGA+TGG | + | chr7.4:19546616-19546635 | MS.gene39025:intron | 35.0% | |
| TATTTCTTGTCACTCAGTTG+AGG | + | chr7.4:19548945-19548964 | MS.gene39025:intron | 35.0% | |
| TGTGCTAAATTAGCGTATTG+AGG | - | chr7.4:19547089-19547108 | None:intergenic | 35.0% | |
| ! | AGTGGATTCCTCTATATACA+AGG | + | chr7.4:19548858-19548877 | MS.gene39025:intron | 35.0% |
| ! | CTTTTGTGTAGTTGAAAAGC+TGG | - | chr7.4:19549072-19549091 | None:intergenic | 35.0% |
| ! | TCATAAATACAAAGGCATGC+CGG | - | chr7.4:19548151-19548170 | None:intergenic | 35.0% |
| !! | TAAGGTTTTCTTTGGGAGTT+AGG | - | chr7.4:19547709-19547728 | None:intergenic | 35.0% |
| !!! | GACAACTTGTATTGTTTTGG+TGG | + | chr7.4:19546771-19546790 | MS.gene39025:intron | 35.0% |
| !!! | GAGTTTTGAGGATTGAAGAA+TGG | + | chr7.4:19547383-19547402 | MS.gene39025:intron | 35.0% |
| AGAGCAGGTGTGTATTATGA+AGG | + | chr7.4:19546517-19546536 | MS.gene39025:intron | 40.0% | |
| ATACCAGAACAGCTACTAGT+AGG | - | chr7.4:19548225-19548244 | None:intergenic | 40.0% | |
| CAGGTGAGAATCATTTCTCA+GGG | + | chr7.4:19548349-19548368 | MS.gene39025:intron | 40.0% | |
| CATGTCGTAGATCATATTCC+TGG | + | chr7.4:19548519-19548538 | MS.gene39025:CDS | 40.0% | |
| CCGTAGAGGCTCAATAAATA+TGG | - | chr7.4:19548625-19548644 | None:intergenic | 40.0% | |
| CTTAGTTTCCCAATATCGGA+GGG | - | chr7.4:19547483-19547502 | None:intergenic | 40.0% | |
| CTTGCAATGCAACAATACGA+CGG | - | chr7.4:19548497-19548516 | None:intergenic | 40.0% | |
| GACTAAAACCCTCCGATATT+GGG | + | chr7.4:19547472-19547491 | MS.gene39025:intron | 40.0% | |
| GAGGATTGAAGAATGGGAAA+AGG | + | chr7.4:19547390-19547409 | MS.gene39025:intron | 40.0% | |
| GGACATTTAGTATGAGATGC+TGG | + | chr7.4:19547935-19547954 | MS.gene39025:intron | 40.0% | |
| GTTGAAACTTCTTCAGAGGT+GGG | + | chr7.4:19548417-19548436 | MS.gene39025:CDS | 40.0% | |
| TATTTATTGAGCCTCTACGG+TGG | + | chr7.4:19548625-19548644 | MS.gene39025:CDS | 40.0% | |
| TCAAATAGTGGCTAGCATAG+CGG | + | chr7.4:19547040-19547059 | MS.gene39025:intron | 40.0% | |
| TCAGGTGAGAATCATTTCTC+AGG | + | chr7.4:19548348-19548367 | MS.gene39025:intron | 40.0% | |
| TCTTAGTTTCCCAATATCGG+AGG | - | chr7.4:19547484-19547503 | None:intergenic | 40.0% | |
| TGGGAGGAATGAAAAGTTAG+CGG | - | chr7.4:19547655-19547674 | None:intergenic | 40.0% | |
| TGTCGTAGATCATATTCCTG+GGG | + | chr7.4:19548521-19548540 | MS.gene39025:CDS | 40.0% | |
| TGTTGAAACTTCTTCAGAGG+TGG | + | chr7.4:19548416-19548435 | MS.gene39025:CDS | 40.0% | |
| TTGAAGAATGGGAAAAGGGA+AGG | + | chr7.4:19547395-19547414 | MS.gene39025:intron | 40.0% | |
| TTTGTTTAATGCCCTCCTTG+TGG | + | chr7.4:19548035-19548054 | MS.gene39025:intron | 40.0% | |
| ! | ACCTCTGAAGAAGTTTCAAC+AGG | - | chr7.4:19548417-19548436 | None:intergenic | 40.0% |
| ! | CCAATTGAAGTATCCCAAAC+GGG | - | chr7.4:19549013-19549032 | None:intergenic | 40.0% |
| ! | CCCAATTGAAGTATCCCAAA+CGG | - | chr7.4:19549014-19549033 | None:intergenic | 40.0% |
| ! | CCGTTTGGGATACTTCAATT+GGG | + | chr7.4:19549011-19549030 | MS.gene39025:CDS | 40.0% |
| ! | GAATTTGTTTGCCCCAATGA+TGG | + | chr7.4:19546488-19546507 | MS.gene39025:CDS | 40.0% |
| ! | GACAGCCGAATATTCTAAAG+TGG | + | chr7.4:19547914-19547933 | MS.gene39025:intron | 40.0% |
| !! | AGGAGGGCATTAAACAAAAC+TGG | - | chr7.4:19548033-19548052 | None:intergenic | 40.0% |
| !! | AGGATAGACAGTTCTAAGCT+TGG | + | chr7.4:19548375-19548394 | MS.gene39025:CDS | 40.0% |
| !! | GAAAACACTGATTTGTACGC+AGG | + | chr7.4:19547213-19547232 | MS.gene39025:intron | 40.0% |
| !! | GGAGGGCATTAAACAAAACT+GGG | - | chr7.4:19548032-19548051 | None:intergenic | 40.0% |
| !! | GTTTTCTTTGGGAGTTAGGA+GGG | - | chr7.4:19547705-19547724 | None:intergenic | 40.0% |
| !! | TGCTCTAGAAAGCCATCATT+GGG | - | chr7.4:19546503-19546522 | None:intergenic | 40.0% |
| !!! | AGCGGAATCTCTCACTTTTT+TGG | - | chr7.4:19547637-19547656 | None:intergenic | 40.0% |
| !!! | CGGAATCTCTCACTTTTTTG+GGG | - | chr7.4:19547635-19547654 | None:intergenic | 40.0% |
| !!! | GCGGAATCTCTCACTTTTTT+GGG | - | chr7.4:19547636-19547655 | None:intergenic | 40.0% |
| AATGGGAAAAGGGAAGGAGA+AGG | + | chr7.4:19547401-19547420 | MS.gene39025:intron | 45.0% | |
| AGAATCATTTCTCAGGGTCG+AGG | + | chr7.4:19548355-19548374 | MS.gene39025:CDS | 45.0% | |
| AGCTCTGCTTTAACGATGCA+AGG | - | chr7.4:19546466-19546485 | None:intergenic | 45.0% | |
| ATGGGAAAAGGGAAGGAGAA+GGG | + | chr7.4:19547402-19547421 | MS.gene39025:intron | 45.0% | |
| CACGACTTCCTTCATGTTGT+GGG | + | chr7.4:19546711-19546730 | MS.gene39025:intron | 45.0% | |
| CACTTCTTGCAGCGATATGT+AGG | - | chr7.4:19548474-19548493 | None:intergenic | 45.0% | |
| GCATAGCTAGGGCTATGTTT+GGG | + | chr7.4:19547337-19547356 | MS.gene39025:intron | 45.0% | |
| GCCTGTTGAAACTTCTTCAG+AGG | + | chr7.4:19548413-19548432 | MS.gene39025:CDS | 45.0% | |
| GCTATGTTTGGGAGTTTGGT+GGG | + | chr7.4:19547348-19547367 | MS.gene39025:intron | 45.0% | |
| GCTCTGCTTTAACGATGCAA+GGG | - | chr7.4:19546465-19546484 | None:intergenic | 45.0% | |
| GGACTAAAACCCTCCGATAT+TGG | + | chr7.4:19547471-19547490 | MS.gene39025:intron | 45.0% | |
| GTAGATCATATTCCTGGGGA+GGG | + | chr7.4:19548525-19548544 | MS.gene39025:CDS | 45.0% | |
| GTTCCTACTAGTAGCTGTTC+TGG | + | chr7.4:19548219-19548238 | MS.gene39025:intron | 45.0% | |
| TAGGGCTATGTTTGGGAGTT+TGG | + | chr7.4:19547344-19547363 | MS.gene39025:intron | 45.0% | |
| TCACGAATCGCGAAGAATAG+TGG | - | chr7.4:19547191-19547210 | None:intergenic | 45.0% | |
| TCACGACTTCCTTCATGTTG+TGG | + | chr7.4:19546710-19546729 | MS.gene39025:intron | 45.0% | |
| TCCTCTGTCTTGCATAGCTA+GGG | + | chr7.4:19547326-19547345 | MS.gene39025:intron | 45.0% | |
| TCTTGTCACTCAGTTGAGGA+AGG | + | chr7.4:19548949-19548968 | MS.gene39025:intron | 45.0% | |
| TGCATAGCTAGGGCTATGTT+TGG | + | chr7.4:19547336-19547355 | MS.gene39025:intron | 45.0% | |
| TTCCTCTGTCTTGCATAGCT+AGG | + | chr7.4:19547325-19547344 | MS.gene39025:intron | 45.0% | |
| TTGGGATACTTCAATTGGGC+AGG | + | chr7.4:19549015-19549034 | MS.gene39025:CDS | 45.0% | |
| ! | CCCGTTTGGGATACTTCAAT+TGG | + | chr7.4:19549010-19549029 | MS.gene39025:CDS | 45.0% |
| ! | GTTTGAGGAGATGGGTTTCA+AGG | + | chr7.4:19546625-19546644 | MS.gene39025:CDS | 45.0% |
| ! | TTTGGGAGTTTGGTGGGAAA+TGG | + | chr7.4:19547354-19547373 | MS.gene39025:intron | 45.0% |
| !! | AGACGAAAGCGCTTGTATAC+AGG | - | chr7.4:19546665-19546684 | None:intergenic | 45.0% |
| !! | AGCTAGCTTTAACGGCACTA+CGG | + | chr7.4:19547121-19547140 | MS.gene39025:intron | 45.0% |
| !! | CAATGATGGCTTTCTAGAGC+AGG | + | chr7.4:19546502-19546521 | MS.gene39025:CDS | 45.0% |
| !! | CTGCTCTAGAAAGCCATCAT+TGG | - | chr7.4:19546504-19546523 | None:intergenic | 45.0% |
| !! | GACGAAAGCGCTTGTATACA+GGG | - | chr7.4:19546664-19546683 | None:intergenic | 45.0% |
| !! | GCATTAGGGAATAGCTTTGG+AGG | + | chr7.4:19547508-19547527 | MS.gene39025:intron | 45.0% |
| !! | GCTCTAGAAAGCCATCATTG+GGG | - | chr7.4:19546502-19546521 | None:intergenic | 45.0% |
| !! | GGTTTTCTTTGGGAGTTAGG+AGG | - | chr7.4:19547706-19547725 | None:intergenic | 45.0% |
| CATGAGGTCCCACAACATGA+AGG | - | chr7.4:19546722-19546741 | None:intergenic | 50.0% | |
| CCATCTTTCATCCACCGTAG+AGG | - | chr7.4:19548639-19548658 | None:intergenic | 50.0% | |
| CCTCTACGGTGGATGAAAGA+TGG | + | chr7.4:19548636-19548655 | MS.gene39025:CDS | 50.0% | |
| CGTAGATCATATTCCTGGGG+AGG | + | chr7.4:19548524-19548543 | MS.gene39025:CDS | 50.0% | |
| GAAGTTTCAACAGGCATGCC+AGG | - | chr7.4:19548408-19548427 | None:intergenic | 50.0% | |
| GAGTTAGGAGGGAAACGAAG+GGG | - | chr7.4:19547694-19547713 | None:intergenic | 50.0% | |
| GCTCATTGTGATGCCCGTTT+GGG | + | chr7.4:19548997-19549016 | MS.gene39025:CDS | 50.0% | |
| GGAGTTAGGAGGGAAACGAA+GGG | - | chr7.4:19547695-19547714 | None:intergenic | 50.0% | |
| GGCTATGTTTGGGAGTTTGG+TGG | + | chr7.4:19547347-19547366 | MS.gene39025:intron | 50.0% | |
| GTTTAATGCCCTCCTTGTGG+TGG | + | chr7.4:19548038-19548057 | MS.gene39025:intron | 50.0% | |
| TACAATGCAGCTGTGGAAGC+TGG | + | chr7.4:19549040-19549059 | MS.gene39025:CDS | 50.0% | |
| TGCTCATTGTGATGCCCGTT+TGG | + | chr7.4:19548996-19549015 | MS.gene39025:CDS | 50.0% | |
| TGGGAGAAGGCTGAGGTTAT+TGG | + | chr7.4:19548069-19548088 | MS.gene39025:intron | 50.0% | |
| ! | AAATGGAGGGGGGAGTTTTG+AGG | + | chr7.4:19547371-19547390 | MS.gene39025:intron | 50.0% |
| ! | AGTTTGGTGGGAAATGGAGG+GGG | + | chr7.4:19547360-19547379 | MS.gene39025:intron | 50.0% |
| ! | GAGTTTGGTGGGAAATGGAG+GGG | + | chr7.4:19547359-19547378 | MS.gene39025:intron | 50.0% |
| ! | GGAGTTTGGTGGGAAATGGA+GGG | + | chr7.4:19547358-19547377 | MS.gene39025:intron | 50.0% |
| !! | TAACGATGCAAGGGCATCTG+CGG | - | chr7.4:19546456-19546475 | None:intergenic | 50.0% |
| !! | TCTAAGCTTGGTGCAGATCC+TGG | + | chr7.4:19548387-19548406 | MS.gene39025:CDS | 50.0% |
| ACGGGCATCACAATGAGCAC+AGG | - | chr7.4:19548995-19549014 | None:intergenic | 55.0% | |
| AGGGTGAGACATCCTTTGGC+TGG | + | chr7.4:19548544-19548563 | MS.gene39025:CDS | 55.0% | |
| ATCCCTCAACCACCACAAGG+AGG | - | chr7.4:19548050-19548069 | None:intergenic | 55.0% | |
| CATCCTTTGGCTGGCACAAG+CGG | + | chr7.4:19548553-19548572 | MS.gene39025:CDS | 55.0% | |
| CCTTGTGGTGGTTGAGGGAT+GGG | + | chr7.4:19548050-19548069 | MS.gene39025:intron | 55.0% | |
| GCAGGCATACAATGCAGCTG+TGG | + | chr7.4:19549033-19549052 | MS.gene39025:CDS | 55.0% | |
| GCCCTAGCTATGCAAGACAG+AGG | - | chr7.4:19547330-19547349 | None:intergenic | 55.0% | |
| GGAAACGAAGGGGAAGGCTT+TGG | - | chr7.4:19547684-19547703 | None:intergenic | 55.0% | |
| GGGAGTTAGGAGGGAAACGA+AGG | - | chr7.4:19547696-19547715 | None:intergenic | 55.0% | |
| GTCTTCAGGGACTTCGCGTT+TGG | + | chr7.4:19546204-19546223 | MS.gene39025:intron | 55.0% | |
| TAGGAGGGAAACGAAGGGGA+AGG | - | chr7.4:19547690-19547709 | None:intergenic | 55.0% | |
| TCCCTCAACCACCACAAGGA+GGG | - | chr7.4:19548049-19548068 | None:intergenic | 55.0% | |
| TCCTTGTGGTGGTTGAGGGA+TGG | + | chr7.4:19548049-19548068 | MS.gene39025:intron | 55.0% | |
| TTTCCGCTTGTGCCAGCCAA+AGG | - | chr7.4:19548559-19548578 | None:intergenic | 55.0% | |
| ! | AACGAAGGGGAAGGCTTTGG+AGG | - | chr7.4:19547681-19547700 | None:intergenic | 55.0% |
| ! | GGGAGTTTGGTGGGAAATGG+AGG | + | chr7.4:19547357-19547376 | MS.gene39025:intron | 55.0% |
| ! | GTTTGGTGGGAAATGGAGGG+GGG | + | chr7.4:19547361-19547380 | MS.gene39025:intron | 55.0% |
| !! | AAGGCTTTGGAGGGAATGGG+AGG | - | chr7.4:19547671-19547690 | None:intergenic | 55.0% |
| !! | ACGAAGGGGAAGGCTTTGGA+GGG | - | chr7.4:19547680-19547699 | None:intergenic | 55.0% |
| !! | GGGAAGGCTTTGGAGGGAAT+GGG | - | chr7.4:19547674-19547693 | None:intergenic | 55.0% |
| AAGGATGTCTCACCCTCCCC+AGG | - | chr7.4:19548540-19548559 | None:intergenic | 60.0% | |
| CCCATCCCTCAACCACCACA+AGG | - | chr7.4:19548053-19548072 | None:intergenic | 60.0% | |
| GCCCTCCTTGTGGTGGTTGA+GGG | + | chr7.4:19548045-19548064 | MS.gene39025:intron | 60.0% | |
| GGCTGGCACAAGCGGAAAAG+TGG | + | chr7.4:19548561-19548580 | MS.gene39025:CDS | 60.0% | |
| GGGGAGGGTGAGACATCCTT+TGG | + | chr7.4:19548540-19548559 | MS.gene39025:CDS | 60.0% | |
| GGTGGTTGAGGGATGGGAGA+AGG | + | chr7.4:19548056-19548075 | MS.gene39025:intron | 60.0% | |
| TGAGGGATGGGAGAAGGCTG+AGG | + | chr7.4:19548062-19548081 | MS.gene39025:intron | 60.0% | |
| TGCCCTCCTTGTGGTGGTTG+AGG | + | chr7.4:19548044-19548063 | MS.gene39025:intron | 60.0% | |
| ! | AGTTGAGGAAGGCGCGTTGG+AGG | + | chr7.4:19548960-19548979 | MS.gene39025:intron | 60.0% |
| ! | CTCAGTTGAGGAAGGCGCGT+TGG | + | chr7.4:19548957-19548976 | MS.gene39025:intron | 60.0% |
| ! | GTTGAGGAAGGCGCGTTGGA+GGG | + | chr7.4:19548961-19548980 | MS.gene39025:intron | 60.0% |
| !! | GGGGAAGGCTTTGGAGGGAA+TGG | - | chr7.4:19547675-19547694 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 19546116 | 19549116 | 19546116 | ID=MS.gene39025 |
| chr7.4 | mRNA | 19546116 | 19549116 | 19546116 | ID=MS.gene39025.t1;Parent=MS.gene39025 |
| chr7.4 | exon | 19546116 | 19546168 | 19546116 | ID=MS.gene39025.t1.exon1;Parent=MS.gene39025.t1 |
| chr7.4 | CDS | 19546116 | 19546168 | 19546116 | ID=cds.MS.gene39025.t1;Parent=MS.gene39025.t1 |
| chr7.4 | exon | 19546459 | 19546523 | 19546459 | ID=MS.gene39025.t1.exon2;Parent=MS.gene39025.t1 |
| chr7.4 | CDS | 19546459 | 19546523 | 19546459 | ID=cds.MS.gene39025.t1;Parent=MS.gene39025.t1 |
| chr7.4 | exon | 19546617 | 19546695 | 19546617 | ID=MS.gene39025.t1.exon3;Parent=MS.gene39025.t1 |
| chr7.4 | CDS | 19546617 | 19546695 | 19546617 | ID=cds.MS.gene39025.t1;Parent=MS.gene39025.t1 |
| chr7.4 | exon | 19548352 | 19548657 | 19548352 | ID=MS.gene39025.t1.exon4;Parent=MS.gene39025.t1 |
| chr7.4 | CDS | 19548352 | 19548657 | 19548352 | ID=cds.MS.gene39025.t1;Parent=MS.gene39025.t1 |
| chr7.4 | exon | 19548962 | 19549116 | 19548962 | ID=MS.gene39025.t1.exon5;Parent=MS.gene39025.t1 |
| chr7.4 | CDS | 19548962 | 19549116 | 19548962 | ID=cds.MS.gene39025.t1;Parent=MS.gene39025.t1 |
| Gene Sequence |
| Protein sequence |
