Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39034.t1 | ABD33028.1 | 98.8 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 8.60E-83 | 316.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39034.t1 | Q9LET3 | 77.2 | 162 | 37 | 0 | 1 | 162 | 1 | 162 | 3.7e-66 | 252.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39034.t1 | G7KQP7 | 98.8 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 6.2e-83 | 316.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene39034 | -0.825873 | 3.70E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39034.t1 | MTR_7g089550 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 2.61e-112 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39034.t1 | AT3G56740 | 77.160 | 162 | 37 | 0 | 1 | 162 | 1 | 162 | 5.89e-80 | 239 |
| MS.gene39034.t1 | AT2G41160 | 69.753 | 162 | 49 | 0 | 1 | 162 | 1 | 162 | 1.55e-78 | 232 |
| MS.gene39034.t1 | AT2G41160 | 69.753 | 162 | 49 | 0 | 1 | 162 | 1 | 162 | 5.38e-78 | 233 |
Find 46 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGGGAATGTCAGAGAAAA+AGG | 0.225565 | 7.4:-19676851 | None:intergenic |
| GTTTCTTACCGAGTGTTTAT+TGG | 0.239336 | 7.4:-19674160 | None:intergenic |
| TGTATCTGCTATATTACTTC+AGG | 0.275704 | 7.4:+19674115 | MS.gene39034:CDS |
| CACTCTGGGCTTGTCTTATC+AGG | 0.296345 | 7.4:+19673222 | MS.gene39034:CDS |
| TTGCTCTGGCAGGATATCTT+TGG | 0.301829 | 7.4:+19674021 | MS.gene39034:intron |
| TTCCCGTTTCAACACGGTTC+CGG | 0.316161 | 7.4:+19676866 | MS.gene39034:CDS |
| CATATATCTAGCTGGTCTTC+AGG | 0.318381 | 7.4:+19676921 | MS.gene39034:CDS |
| CTAGTCACTCCTGGACCTTA+TGG | 0.354454 | 7.4:+19676805 | MS.gene39034:CDS |
| GTACAAATGAAGCAAATATA+AGG | 0.367164 | 7.4:-19676828 | None:intergenic |
| TCAACACCCGAGTTGATGTT+TGG | 0.372056 | 7.4:+19674090 | MS.gene39034:CDS |
| AGGGTATTTGAGAGACAAAT+TGG | 0.377821 | 7.4:+19674135 | MS.gene39034:CDS |
| ATCCGGAACCGTGTTGAAAC+GGG | 0.381204 | 7.4:-19676868 | None:intergenic |
| TGAGAAGAATACCTTTCAAA+AGG | 0.393420 | 7.4:-19674395 | None:intergenic |
| AATCCGGAACCGTGTTGAAA+CGG | 0.409263 | 7.4:-19676869 | None:intergenic |
| ATGATGAAAGCCCTTGTAAC+AGG | 0.411155 | 7.4:-19673151 | None:intergenic |
| AAGATGAACGGAGGCCCATC+TGG | 0.417863 | 7.4:+19672964 | None:intergenic |
| TCAACACGGTTCCGGATTTG+TGG | 0.420358 | 7.4:+19676874 | MS.gene39034:CDS |
| TCTTTGGAAAGCTTCGCATA+TGG | 0.424524 | 7.4:+19674037 | MS.gene39034:CDS |
| CCAAGGTCGTTTCAACACTC+TGG | 0.455976 | 7.4:+19673207 | MS.gene39034:CDS |
| CAGCAAATGCTCCTGTTACA+AGG | 0.460401 | 7.4:+19673140 | MS.gene39034:intron |
| GTATCTGCTATATTACTTCA+GGG | 0.469006 | 7.4:+19674116 | MS.gene39034:CDS |
| GAAGCAAATATAAGGCCATA+AGG | 0.481302 | 7.4:-19676820 | None:intergenic |
| CATAAGGTCCAGGAGTGACT+AGG | 0.495943 | 7.4:-19676804 | None:intergenic |
| GAGAAGAATACCTTTCAAAA+GGG | 0.496921 | 7.4:-19674394 | None:intergenic |
| ACAATCTTCTTTGGGATCCA+AGG | 0.509043 | 7.4:+19673190 | MS.gene39034:CDS |
| TTCTTCACTGCGAAGATGAA+CGG | 0.509557 | 7.4:+19672952 | None:intergenic |
| CAAGGTCGTTTCAACACTCT+GGG | 0.509561 | 7.4:+19673208 | MS.gene39034:CDS |
| AGAAGTGGAAACCACAAATC+CGG | 0.517755 | 7.4:-19676885 | None:intergenic |
| TCAACAACCCTAGTCACTCC+TGG | 0.520704 | 7.4:+19676796 | MS.gene39034:CDS |
| TGAATGACTTATCTGAGAAG+TGG | 0.532500 | 7.4:-19676900 | None:intergenic |
| AAGTCATTCATATATCTAGC+TGG | 0.554427 | 7.4:+19676913 | MS.gene39034:CDS |
| AGCAAATGCTCCTGTTACAA+GGG | 0.557156 | 7.4:+19673141 | MS.gene39034:intron |
| GGAGTGACTAGGGTTGTTGA+AGG | 0.558621 | 7.4:-19676793 | None:intergenic |
| AATATAAGGCCATAAGGTCC+AGG | 0.569522 | 7.4:-19676814 | None:intergenic |
| CTGACATTCCCGTTTCAACA+CGG | 0.572933 | 7.4:+19676860 | MS.gene39034:CDS |
| ATAAGGTCCAGGAGTGACTA+GGG | 0.576095 | 7.4:-19676803 | None:intergenic |
| AAATAGTAGTGAGGATAACA+TGG | 0.585490 | 7.4:-19674355 | None:intergenic |
| CAACTCGGGTGTTGATGTGA+AGG | 0.600481 | 7.4:-19674082 | None:intergenic |
| CCAGAGTGTTGAAACGACCT+TGG | 0.608285 | 7.4:-19673207 | None:intergenic |
| TACAATCCAAACATCAACTC+GGG | 0.610315 | 7.4:-19674096 | None:intergenic |
| ATGAACGTACTGAAACCAGA+TGG | 0.615760 | 7.4:-19672979 | None:intergenic |
| TGAACGTACTGAAACCAGAT+GGG | 0.647169 | 7.4:-19672978 | None:intergenic |
| AATTGGTTCCAATAAACACT+CGG | 0.650758 | 7.4:+19674152 | MS.gene39034:CDS |
| ATACAATCCAAACATCAACT+CGG | 0.655682 | 7.4:-19674097 | None:intergenic |
| AACTACTTCAAATAGTAGTG+AGG | 0.659587 | 7.4:-19674364 | None:intergenic |
| TTCACTGCGAAGATGAACGG+AGG | 0.686461 | 7.4:+19672955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTAACTAAACAAA+GGG | - | chr7.4:19673418-19673437 | None:intergenic | 10.0% |
| !!! | TACTTTAATTCATATTTTTA+TGG | + | chr7.4:19675064-19675083 | MS.gene39034:intron | 10.0% |
| !! | AAAATTGAAAACAACAAAAA+AGG | - | chr7.4:19673046-19673065 | None:intergenic | 15.0% |
| !! | AAATTATTAACTAAACAAAG+GGG | - | chr7.4:19673417-19673436 | None:intergenic | 15.0% |
| !! | AAATTGAAAACAACAAAAAA+GGG | - | chr7.4:19673045-19673064 | None:intergenic | 15.0% |
| !! | AGCATTAATATTTCATTTAA+AGG | - | chr7.4:19674688-19674707 | None:intergenic | 15.0% |
| !! | ATAGCAATTAGATATATAAA+AGG | - | chr7.4:19674266-19674285 | None:intergenic | 15.0% |
| !! | ATGAAAATTTAAAGAGATAT+TGG | + | chr7.4:19675183-19675202 | MS.gene39034:intron | 15.0% |
| !! | CAAAATTATTAACTAAACAA+AGG | - | chr7.4:19673419-19673438 | None:intergenic | 15.0% |
| !! | CAATCAAATATATGTAAAAT+AGG | + | chr7.4:19675602-19675621 | MS.gene39034:intron | 15.0% |
| !! | GCATTAATATTTCATTTAAA+GGG | - | chr7.4:19674687-19674706 | None:intergenic | 15.0% |
| !! | TAATACTTAAAATACTGAAT+GGG | + | chr7.4:19675356-19675375 | MS.gene39034:intron | 15.0% |
| !!! | AAACTTGTTAGTTTATATTT+AGG | + | chr7.4:19674179-19674198 | MS.gene39034:intron | 15.0% |
| !! | AACAGAAAAGAGAAAAAATA+AGG | - | chr7.4:19675475-19675494 | None:intergenic | 20.0% |
| !! | AATACTTAAAATACTGAATG+GGG | + | chr7.4:19675357-19675376 | MS.gene39034:intron | 20.0% |
| !! | AATTATTAACTAAACAAAGG+GGG | - | chr7.4:19673416-19673435 | None:intergenic | 20.0% |
| !! | ATAGGATTTCTGTTTAATAA+CGG | + | chr7.4:19675670-19675689 | MS.gene39034:intron | 20.0% |
| !! | ATATGTAATTGTTAAGTAGT+TGG | + | chr7.4:19674904-19674923 | MS.gene39034:intron | 20.0% |
| !! | CGTATAACTTAGTTAAAAAT+TGG | - | chr7.4:19673471-19673490 | None:intergenic | 20.0% |
| !! | GAAAAAGTTAAGTAAATCAA+CGG | - | chr7.4:19673678-19673697 | None:intergenic | 20.0% |
| !! | GTAATACTTAAAATACTGAA+TGG | + | chr7.4:19675355-19675374 | MS.gene39034:intron | 20.0% |
| !! | TGAAAAAGGAAAAATCAAAT+CGG | - | chr7.4:19673250-19673269 | None:intergenic | 20.0% |
| !! | TTAAAAAAATCAGTATCTAC+AGG | - | chr7.4:19676633-19676652 | None:intergenic | 20.0% |
| !! | TTAATATTTCATTTAAAGGG+AGG | - | chr7.4:19674684-19674703 | None:intergenic | 20.0% |
| !! | TTGGAGATAAAATAATTTCT+AGG | + | chr7.4:19676004-19676023 | MS.gene39034:intron | 20.0% |
| !!! | ATTAATTTGATTTTAGACCA+AGG | + | chr7.4:19675131-19675150 | MS.gene39034:intron | 20.0% |
| !!! | ATTCATATTTTTATGGAAGA+AGG | + | chr7.4:19675071-19675090 | MS.gene39034:intron | 20.0% |
| !!! | ATTCTAATTGTACCTTTTAT+GGG | + | chr7.4:19674284-19674303 | MS.gene39034:intron | 20.0% |
| !!! | ATTTACTTAACTTTTTCTCT+TGG | + | chr7.4:19673681-19673700 | MS.gene39034:intron | 20.0% |
| !!! | CAAAAGCATTAAAATGAAAA+AGG | - | chr7.4:19673264-19673283 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTAATTTACATTC+TGG | + | chr7.4:19673777-19673796 | MS.gene39034:intron | 20.0% |
| !!! | GTATAAATGCTATGATTTTA+TGG | + | chr7.4:19673752-19673771 | MS.gene39034:intron | 20.0% |
| !!! | TAAGTTATACGATTACTTTT+AGG | + | chr7.4:19673480-19673499 | MS.gene39034:intron | 20.0% |
| !!! | TATTCTAATTGTACCTTTTA+TGG | + | chr7.4:19674283-19674302 | MS.gene39034:intron | 20.0% |
| !!! | TTTTGTTACAAAGTGTTTTT+TGG | + | chr7.4:19673063-19673082 | MS.gene39034:intron | 20.0% |
| ! | AAAAACAAAATCTTGACCTT+TGG | - | chr7.4:19675881-19675900 | None:intergenic | 25.0% |
| ! | AAAATAAGGAAAGAATGTGA+AGG | - | chr7.4:19675461-19675480 | None:intergenic | 25.0% |
| ! | AAAGCTGTTTAATGAAATTG+AGG | + | chr7.4:19675003-19675022 | MS.gene39034:intron | 25.0% |
| ! | AAGCATAAGTTTATAATGCT+TGG | - | chr7.4:19676407-19676426 | None:intergenic | 25.0% |
| ! | ACAAAAAAGGGAAAAATGAA+AGG | - | chr7.4:19673033-19673052 | None:intergenic | 25.0% |
| ! | ACTCATTTGGTATTACAATA+TGG | - | chr7.4:19676129-19676148 | None:intergenic | 25.0% |
| ! | ATAGACTCTTATTGATCAAT+GGG | - | chr7.4:19675516-19675535 | None:intergenic | 25.0% |
| ! | ATATTTCAAAACCCCATAAA+AGG | - | chr7.4:19674299-19674318 | None:intergenic | 25.0% |
| ! | CAAAAAAGGGAAAAATGAAA+GGG | - | chr7.4:19673032-19673051 | None:intergenic | 25.0% |
| ! | CAAAAATAGTCAAGAAAACT+CGG | - | chr7.4:19674543-19674562 | None:intergenic | 25.0% |
| ! | CTTACAAATCAATAAGAACA+GGG | - | chr7.4:19675243-19675262 | None:intergenic | 25.0% |
| ! | GTACAAATGAAGCAAATATA+AGG | - | chr7.4:19676831-19676850 | None:intergenic | 25.0% |
| ! | TAACAAGTAAATTACTTCTG+TGG | - | chr7.4:19675164-19675183 | None:intergenic | 25.0% |
| ! | TCAATTTAGAAGAGATGAAT+TGG | - | chr7.4:19675911-19675930 | None:intergenic | 25.0% |
| ! | TCTTACAAATCAATAAGAAC+AGG | - | chr7.4:19675244-19675263 | None:intergenic | 25.0% |
| ! | TTCAATGTAATCACATATGT+CGG | - | chr7.4:19673565-19673584 | None:intergenic | 25.0% |
| !! | ATATTATAACTTGTAAGCAC+TGG | + | chr7.4:19673919-19673938 | MS.gene39034:intron | 25.0% |
| !! | TTCTAATTGTACCTTTTATG+GGG | + | chr7.4:19674285-19674304 | MS.gene39034:intron | 25.0% |
| !!! | TAAATGGTTATCAGTTTTAG+AGG | + | chr7.4:19674656-19674675 | MS.gene39034:intron | 25.0% |
| !!! | TTTAATTTACATTCTGGTTC+AGG | + | chr7.4:19673783-19673802 | MS.gene39034:intron | 25.0% |
| AAATAGTAGTGAGGATAACA+TGG | - | chr7.4:19674358-19674377 | None:intergenic | 30.0% | |
| AAATATGCTCAATGTTGCAA+AGG | + | chr7.4:19675739-19675758 | MS.gene39034:intron | 30.0% | |
| AACTACTTCAAATAGTAGTG+AGG | - | chr7.4:19674367-19674386 | None:intergenic | 30.0% | |
| AAGTCATTCATATATCTAGC+TGG | + | chr7.4:19676913-19676932 | MS.gene39034:CDS | 30.0% | |
| AATTCTTGCGTAATATGTGT+TGG | - | chr7.4:19676587-19676606 | None:intergenic | 30.0% | |
| AATTGTTAAGTAGTTGGACT+TGG | + | chr7.4:19674910-19674929 | MS.gene39034:intron | 30.0% | |
| AGTATGAAGAGAAATTCCAT+TGG | + | chr7.4:19675424-19675443 | MS.gene39034:intron | 30.0% | |
| ATACAATCCAAACATCAACT+CGG | - | chr7.4:19674100-19674119 | None:intergenic | 30.0% | |
| ATCCTATCAACAAGTTTGAA+TGG | + | chr7.4:19676522-19676541 | MS.gene39034:intron | 30.0% | |
| ATGTATTCTTTAAGCCCAAA+GGG | + | chr7.4:19675964-19675983 | MS.gene39034:intron | 30.0% | |
| CAAATCCACAAAACAATCAT+TGG | + | chr7.4:19676486-19676505 | MS.gene39034:intron | 30.0% | |
| CACTTAACTGACATTTGAAA+AGG | - | chr7.4:19674619-19674638 | None:intergenic | 30.0% | |
| CATATTACGCAAGAATTTGA+TGG | + | chr7.4:19676590-19676609 | MS.gene39034:intron | 30.0% | |
| CTAGTGAATAGGCTATTAAA+GGG | - | chr7.4:19674814-19674833 | None:intergenic | 30.0% | |
| CTTTCTAAATGAAGACGATT+TGG | - | chr7.4:19676346-19676365 | None:intergenic | 30.0% | |
| GAACAGAACCTTAAATATCA+AGG | - | chr7.4:19676719-19676738 | None:intergenic | 30.0% | |
| GACATGCACATTCAAATATA+TGG | - | chr7.4:19674500-19674519 | None:intergenic | 30.0% | |
| GACTAGGTAATATACCTATT+GGG | + | chr7.4:19674932-19674951 | MS.gene39034:intron | 30.0% | |
| GAGAAGAATACCTTTCAAAA+GGG | - | chr7.4:19674397-19674416 | None:intergenic | 30.0% | |
| GAGATTGATCAAAGTTTAAG+AGG | - | chr7.4:19674445-19674464 | None:intergenic | 30.0% | |
| GATAGACTCTTATTGATCAA+TGG | - | chr7.4:19675517-19675536 | None:intergenic | 30.0% | |
| GCTCTTTAATAACACTCATT+TGG | - | chr7.4:19676142-19676161 | None:intergenic | 30.0% | |
| GTATCTGCTATATTACTTCA+GGG | + | chr7.4:19674116-19674135 | MS.gene39034:CDS | 30.0% | |
| GTGTTTATGGTTCATAAGTT+AGG | + | chr7.4:19673625-19673644 | MS.gene39034:intron | 30.0% | |
| TAAAGGGCAAAAAACAACTT+GGG | - | chr7.4:19674798-19674817 | None:intergenic | 30.0% | |
| TAATAGCCTATTCACTAGAA+AGG | + | chr7.4:19674816-19674835 | MS.gene39034:intron | 30.0% | |
| TATCAGTGAACAAATCTGAT+GGG | + | chr7.4:19673725-19673744 | MS.gene39034:intron | 30.0% | |
| TATGTATTCTTTAAGCCCAA+AGG | + | chr7.4:19675963-19675982 | MS.gene39034:intron | 30.0% | |
| TCGAATAGCAGTTATTATAG+CGG | + | chr7.4:19676253-19676272 | MS.gene39034:intron | 30.0% | |
| TCTAGTGAATAGGCTATTAA+AGG | - | chr7.4:19674815-19674834 | None:intergenic | 30.0% | |
| TCTATATCTCAATTCCCAAT+AGG | - | chr7.4:19674949-19674968 | None:intergenic | 30.0% | |
| TGAGAAGAATACCTTTCAAA+AGG | - | chr7.4:19674398-19674417 | None:intergenic | 30.0% | |
| TGTATCTGCTATATTACTTC+AGG | + | chr7.4:19674115-19674134 | MS.gene39034:CDS | 30.0% | |
| TTAAAGGGCAAAAAACAACT+TGG | - | chr7.4:19674799-19674818 | None:intergenic | 30.0% | |
| TTATCAGTGAACAAATCTGA+TGG | + | chr7.4:19673724-19673743 | MS.gene39034:intron | 30.0% | |
| TTCATTTAGAAAGTCATCCA+AGG | + | chr7.4:19676353-19676372 | MS.gene39034:intron | 30.0% | |
| TTGGGAATTGAGATATAGAT+TGG | + | chr7.4:19674950-19674969 | MS.gene39034:intron | 30.0% | |
| TTTCAAATGTCAGTTAAGTG+TGG | + | chr7.4:19674619-19674638 | MS.gene39034:intron | 30.0% | |
| TTTGCAACATTGAGCATATT+TGG | - | chr7.4:19675740-19675759 | None:intergenic | 30.0% | |
| TTTGTGCACCTTGATATTTA+AGG | + | chr7.4:19676708-19676727 | MS.gene39034:intron | 30.0% | |
| ! | AAAAGTACACCCTTTATCTT+AGG | + | chr7.4:19674845-19674864 | MS.gene39034:intron | 30.0% |
| ! | AATTGGTTCCAATAAACACT+CGG | + | chr7.4:19674152-19674171 | MS.gene39034:CDS | 30.0% |
| ! | CAAAACAATCATTGGTTATG+AGG | + | chr7.4:19676494-19676513 | MS.gene39034:intron | 30.0% |
| ! | CTATTAACATTGATGACTAG+CGG | + | chr7.4:19676278-19676297 | MS.gene39034:intron | 30.0% |
| ! | TTTGTAAGAAGCATACAGAA+AGG | + | chr7.4:19675255-19675274 | MS.gene39034:intron | 30.0% |
| ! | TTTTAGTAGTTCCTTGACAT+GGG | + | chr7.4:19675839-19675858 | MS.gene39034:intron | 30.0% |
| !! | AATTTGATTTTAGACCAAGG+AGG | + | chr7.4:19675134-19675153 | MS.gene39034:intron | 30.0% |
| !! | ATTTTAGTAGTTCCTTGACA+TGG | + | chr7.4:19675838-19675857 | MS.gene39034:intron | 30.0% |
| !! | CATAACCAATGATTGTTTTG+TGG | - | chr7.4:19676494-19676513 | None:intergenic | 30.0% |
| !! | GAAAGGTATTCTTCTCAATT+TGG | + | chr7.4:19674401-19674420 | MS.gene39034:intron | 30.0% |
| !! | TACCATTCAAACTTGTTGAT+AGG | - | chr7.4:19676527-19676546 | None:intergenic | 30.0% |
| AAAGGGTCTTTCACATGAAA+TGG | + | chr7.4:19675981-19676000 | MS.gene39034:intron | 35.0% | |
| ACAAGATGTCAATGAAAGGT+TGG | + | chr7.4:19674761-19674780 | MS.gene39034:intron | 35.0% | |
| ACATTACATCAGCAAGAACT+TGG | - | chr7.4:19674242-19674261 | None:intergenic | 35.0% | |
| ATGAAGAGAAATTCCATTGG+AGG | + | chr7.4:19675427-19675446 | MS.gene39034:intron | 35.0% | |
| ATTTCATGTGAAAGACCCTT+TGG | - | chr7.4:19675982-19676001 | None:intergenic | 35.0% | |
| CAGAACAAGATGTCAATGAA+AGG | + | chr7.4:19674757-19674776 | MS.gene39034:intron | 35.0% | |
| CATAAACACAGACAAAGACA+CGG | - | chr7.4:19673614-19673633 | None:intergenic | 35.0% | |
| CATTTGCACTGTAAAGAAGA+AGG | - | chr7.4:19676563-19676582 | None:intergenic | 35.0% | |
| CGTATCGAATTACAGTATCA+CGG | - | chr7.4:19676213-19676232 | None:intergenic | 35.0% | |
| CTAGAAGAGAATGGTATAAG+AGG | + | chr7.4:19674974-19674993 | MS.gene39034:intron | 35.0% | |
| CTCCTGAATCCTAAGATAAA+GGG | - | chr7.4:19674857-19674876 | None:intergenic | 35.0% | |
| CTTCTTCTTTACAGTGCAAA+TGG | + | chr7.4:19676561-19676580 | MS.gene39034:intron | 35.0% | |
| GAAAATGACTTGACCAACAT+GGG | + | chr7.4:19675212-19675231 | MS.gene39034:intron | 35.0% | |
| GAAGCAAATATAAGGCCATA+AGG | - | chr7.4:19676823-19676842 | None:intergenic | 35.0% | |
| GAAGGCTCAAAACAATAAAG+GGG | + | chr7.4:19675558-19675577 | MS.gene39034:intron | 35.0% | |
| GGAAGGCTCAAAACAATAAA+GGG | + | chr7.4:19675557-19675576 | MS.gene39034:intron | 35.0% | |
| GGACTAGGTAATATACCTAT+TGG | + | chr7.4:19674931-19674950 | MS.gene39034:intron | 35.0% | |
| GGTGTGTGAAAATTGAAGAA+GGG | - | chr7.4:19673011-19673030 | None:intergenic | 35.0% | |
| GTAAAATAGGATCGTGACTT+AGG | + | chr7.4:19675615-19675634 | MS.gene39034:intron | 35.0% | |
| GTGGTCTAAAGATGTTAGTT+AGG | - | chr7.4:19676036-19676055 | None:intergenic | 35.0% | |
| GTTTCTTACCGAGTGTTTAT+TGG | - | chr7.4:19674163-19674182 | None:intergenic | 35.0% | |
| TAAACAGAAATCCTATACCG+AGG | - | chr7.4:19675666-19675685 | None:intergenic | 35.0% | |
| TACAATCCAAACATCAACTC+GGG | - | chr7.4:19674099-19674118 | None:intergenic | 35.0% | |
| TACTACAGAAAGAAGGTGAA+GGG | + | chr7.4:19675321-19675340 | MS.gene39034:intron | 35.0% | |
| TGAAAATGACTTGACCAACA+TGG | + | chr7.4:19675211-19675230 | MS.gene39034:intron | 35.0% | |
| TGAAGAGAAATTCCATTGGA+GGG | + | chr7.4:19675428-19675447 | MS.gene39034:intron | 35.0% | |
| TGAATGACTTATCTGAGAAG+TGG | - | chr7.4:19676903-19676922 | None:intergenic | 35.0% | |
| TGAGATAAATGGAAATGTCG+TGG | - | chr7.4:19676055-19676074 | None:intergenic | 35.0% | |
| TGGAAGGCTCAAAACAATAA+AGG | + | chr7.4:19675556-19675575 | MS.gene39034:intron | 35.0% | |
| TGTGAAAAATGTCAGAGTTC+CGG | - | chr7.4:19673950-19673969 | None:intergenic | 35.0% | |
| TTCTCAGCTCTTGAGATAAA+TGG | - | chr7.4:19676066-19676085 | None:intergenic | 35.0% | |
| TTCTCTTGGAGTTGTAACAA+GGG | + | chr7.4:19673695-19673714 | MS.gene39034:intron | 35.0% | |
| TTTAGAAAGTCATCCAAGGT+TGG | + | chr7.4:19676357-19676376 | MS.gene39034:intron | 35.0% | |
| TTTAGTAGTTCCTTGACATG+GGG | + | chr7.4:19675840-19675859 | MS.gene39034:intron | 35.0% | |
| TTTCATGTGAAAGACCCTTT+GGG | - | chr7.4:19675981-19676000 | None:intergenic | 35.0% | |
| TTTCTCTTGGAGTTGTAACA+AGG | + | chr7.4:19673694-19673713 | MS.gene39034:intron | 35.0% | |
| ! | AAGAGTGTACTACAGAAAGA+AGG | + | chr7.4:19675314-19675333 | MS.gene39034:intron | 35.0% |
| ! | AGGGTATTTGAGAGACAAAT+TGG | + | chr7.4:19674135-19674154 | MS.gene39034:CDS | 35.0% |
| ! | CAAAGGTGCAAATGTTACAA+TGG | + | chr7.4:19675756-19675775 | MS.gene39034:intron | 35.0% |
| ! | CGCTTTTCACAATCTTCTTT+GGG | + | chr7.4:19673182-19673201 | MS.gene39034:CDS | 35.0% |
| !! | ACTTAGGTTGAGAATACAAG+AGG | + | chr7.4:19675631-19675650 | MS.gene39034:intron | 35.0% |
| !! | ATCAAGTGGGAAAGTACTAA+TGG | + | chr7.4:19675801-19675820 | MS.gene39034:intron | 35.0% |
| !! | CTTAGGTTGAGAATACAAGA+GGG | + | chr7.4:19675632-19675651 | MS.gene39034:intron | 35.0% |
| !! | TAGATTGGTCTAGAAGAGAA+TGG | + | chr7.4:19674965-19674984 | MS.gene39034:intron | 35.0% |
| !! | TGGTTTGTTCAAATTCAGCT+AGG | - | chr7.4:19676182-19676201 | None:intergenic | 35.0% |
| !! | TTAGGTTGAGAATACAAGAG+GGG | + | chr7.4:19675633-19675652 | MS.gene39034:intron | 35.0% |
| !! | TTTGGTTGTTAGCTTTGTAC+TGG | - | chr7.4:19675722-19675741 | None:intergenic | 35.0% |
| AAAGTCATCCAAGGTTGGAA+AGG | + | chr7.4:19676362-19676381 | MS.gene39034:intron | 40.0% | |
| AACATTGAATGCTGAGACCA+GGG | - | chr7.4:19676442-19676461 | None:intergenic | 40.0% | |
| AACGGGAATGTCAGAGAAAA+AGG | - | chr7.4:19676854-19676873 | None:intergenic | 40.0% | |
| AACTTCCGTGAGGATAAAGA+GGG | + | chr7.4:19674720-19674739 | MS.gene39034:intron | 40.0% | |
| AAGAGCTGAGAATATTCAGC+TGG | + | chr7.4:19676074-19676093 | MS.gene39034:intron | 40.0% | |
| AATATAAGGCCATAAGGTCC+AGG | - | chr7.4:19676817-19676836 | None:intergenic | 40.0% | |
| ACACTTAGTGAGATAAGGCT+TGG | + | chr7.4:19673845-19673864 | MS.gene39034:intron | 40.0% | |
| ACAGTATCACGGAACAGTAA+TGG | - | chr7.4:19676202-19676221 | None:intergenic | 40.0% | |
| ACGGGAATGTCAGAGAAAAA+GGG | - | chr7.4:19676853-19676872 | None:intergenic | 40.0% | |
| ACTGCAACAATAGGATCAAG+TGG | + | chr7.4:19675787-19675806 | MS.gene39034:intron | 40.0% | |
| AGAAGTGGAAACCACAAATC+CGG | - | chr7.4:19676888-19676907 | None:intergenic | 40.0% | |
| AGCAAATGCTCCTGTTACAA+GGG | + | chr7.4:19673141-19673160 | MS.gene39034:intron | 40.0% | |
| ATGAACGTACTGAAACCAGA+TGG | - | chr7.4:19672982-19673001 | None:intergenic | 40.0% | |
| ATGATGAAAGCCCTTGTAAC+AGG | - | chr7.4:19673154-19673173 | None:intergenic | 40.0% | |
| CAACCACACTTAGTGAGATA+AGG | + | chr7.4:19673840-19673859 | MS.gene39034:intron | 40.0% | |
| CACCCTTTATCTTAGGATTC+AGG | + | chr7.4:19674852-19674871 | MS.gene39034:intron | 40.0% | |
| CCTCCTGAATCCTAAGATAA+AGG | - | chr7.4:19674858-19674877 | None:intergenic | 40.0% | |
| CCTTTATCTTAGGATTCAGG+AGG | + | chr7.4:19674855-19674874 | MS.gene39034:intron | 40.0% | |
| CGTGTCTTTGTCTGTGTTTA+TGG | + | chr7.4:19673612-19673631 | MS.gene39034:intron | 40.0% | |
| CTGCAACAATAGGATCAAGT+GGG | + | chr7.4:19675788-19675807 | MS.gene39034:intron | 40.0% | |
| CTTATCTCACTAAGTGTGGT+TGG | - | chr7.4:19673842-19673861 | None:intergenic | 40.0% | |
| CTTTACCCTCTTTATCCTCA+CGG | - | chr7.4:19674728-19674747 | None:intergenic | 40.0% | |
| GGATAAAGAGGGTAAAGTCT+TGG | + | chr7.4:19674731-19674750 | MS.gene39034:intron | 40.0% | |
| GGGTGTGTGAAAATTGAAGA+AGG | - | chr7.4:19673012-19673031 | None:intergenic | 40.0% | |
| GGTCTTTCACATGAAATGGT+TGG | + | chr7.4:19675985-19676004 | MS.gene39034:intron | 40.0% | |
| GTACTACAGAAAGAAGGTGA+AGG | + | chr7.4:19675320-19675339 | MS.gene39034:intron | 40.0% | |
| TAAGTAGTTGGACTTGGACT+AGG | + | chr7.4:19674916-19674935 | MS.gene39034:intron | 40.0% | |
| TAGCCTATTCACTAGAAAGG+AGG | + | chr7.4:19674819-19674838 | MS.gene39034:intron | 40.0% | |
| TCAGTTAAGTGTGGATCACA+CGG | + | chr7.4:19674628-19674647 | MS.gene39034:intron | 40.0% | |
| TCATGTCATTGTCTCGAATC+CGG | + | chr7.4:19673585-19673604 | MS.gene39034:intron | 40.0% | |
| TGAACGTACTGAAACCAGAT+GGG | - | chr7.4:19672981-19673000 | None:intergenic | 40.0% | |
| TTGTCGATCGCAGAAAATAG+TGG | - | chr7.4:19676316-19676335 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCTCACTAAGTG+TGG | - | chr7.4:19673846-19673865 | None:intergenic | 40.0% |
| ! | AGACCTCCTTTCTAGTGAAT+AGG | - | chr7.4:19674825-19674844 | None:intergenic | 40.0% |
| ! | GCGCTTTTCACAATCTTCTT+TGG | + | chr7.4:19673181-19673200 | MS.gene39034:CDS | 40.0% |
| ! | GCTGCAATCTGTTTTACCAA+AGG | + | chr7.4:19675862-19675881 | MS.gene39034:intron | 40.0% |
| ! | TACGCAAGAATTTGATGGCA+TGG | + | chr7.4:19676595-19676614 | MS.gene39034:intron | 40.0% |
| ! | TAGGTTGAGAATACAAGAGG+GGG | + | chr7.4:19675634-19675653 | MS.gene39034:intron | 40.0% |
| ! | TCTTTGGAAAGCTTCGCATA+TGG | + | chr7.4:19674037-19674056 | MS.gene39034:CDS | 40.0% |
| !! | ACAATCTTCTTTGGGATCCA+AGG | + | chr7.4:19673190-19673209 | MS.gene39034:CDS | 40.0% |
| !! | AGCATACAGAAAGGTGTTGT+TGG | + | chr7.4:19675264-19675283 | MS.gene39034:intron | 40.0% |
| AATCCGGAACCGTGTTGAAA+CGG | - | chr7.4:19676872-19676891 | None:intergenic | 45.0% | |
| AATTCAGACGCATTGTGCAG+TGG | + | chr7.4:19675930-19675949 | MS.gene39034:intron | 45.0% | |
| ACACACAACCTTTCCAACCT+TGG | - | chr7.4:19676373-19676392 | None:intergenic | 45.0% | |
| ACTAAGTGTGGTTGGCAACA+TGG | - | chr7.4:19673834-19673853 | None:intergenic | 45.0% | |
| ATAAGGTCCAGGAGTGACTA+GGG | - | chr7.4:19676806-19676825 | None:intergenic | 45.0% | |
| ATCTTAGGATTCAGGAGGCT+GGG | + | chr7.4:19674860-19674879 | MS.gene39034:intron | 45.0% | |
| ATGTATGACGAGTGAGAGTG+AGG | + | chr7.4:19675035-19675054 | MS.gene39034:intron | 45.0% | |
| CAAGGTCGTTTCAACACTCT+GGG | + | chr7.4:19673208-19673227 | MS.gene39034:CDS | 45.0% | |
| CACATCTTTGAACTTCCGTG+AGG | + | chr7.4:19674710-19674729 | MS.gene39034:intron | 45.0% | |
| CAGCAAATGCTCCTGTTACA+AGG | + | chr7.4:19673140-19673159 | MS.gene39034:intron | 45.0% | |
| CAGTTAAGTGTGGATCACAC+GGG | + | chr7.4:19674629-19674648 | MS.gene39034:intron | 45.0% | |
| CTGACATTCCCGTTTCAACA+CGG | + | chr7.4:19676860-19676879 | MS.gene39034:CDS | 45.0% | |
| GAAATCCTATACCGAGGAAG+TGG | - | chr7.4:19675660-19675679 | None:intergenic | 45.0% | |
| GAACATTGAATGCTGAGACC+AGG | - | chr7.4:19676443-19676462 | None:intergenic | 45.0% | |
| GAACTTCCGTGAGGATAAAG+AGG | + | chr7.4:19674719-19674738 | MS.gene39034:intron | 45.0% | |
| GAAGGCTATTTACCCTCCAA+TGG | - | chr7.4:19675443-19675462 | None:intergenic | 45.0% | |
| GACAAGTGCACTGCAACAAT+AGG | + | chr7.4:19675778-19675797 | MS.gene39034:intron | 45.0% | |
| GCCTTCCATAATACCTCTGT+TGG | - | chr7.4:19675544-19675563 | None:intergenic | 45.0% | |
| GGATCACACGGGATGATAAA+TGG | + | chr7.4:19674640-19674659 | MS.gene39034:intron | 45.0% | |
| TATCTTAGGATTCAGGAGGC+TGG | + | chr7.4:19674859-19674878 | MS.gene39034:intron | 45.0% | |
| TGAATGGGGAGCAGAAGTTA+GGG | + | chr7.4:19675371-19675390 | MS.gene39034:intron | 45.0% | |
| TGCACTGTAAAGAAGAAGGC+AGG | - | chr7.4:19676559-19676578 | None:intergenic | 45.0% | |
| TGGTTCAGGATAGAACACTG+TGG | + | chr7.4:19673797-19673816 | MS.gene39034:intron | 45.0% | |
| TGTATGACGAGTGAGAGTGA+GGG | + | chr7.4:19675036-19675055 | MS.gene39034:intron | 45.0% | |
| TTGCTCTGGCAGGATATCTT+TGG | + | chr7.4:19674021-19674040 | MS.gene39034:intron | 45.0% | |
| ! | GAGTTGTGTTGTTCTTGCTC+TGG | + | chr7.4:19674007-19674026 | MS.gene39034:intron | 45.0% |
| ! | GTTGCTGTAGCCCTTTTGAA+AGG | + | chr7.4:19674384-19674403 | MS.gene39034:CDS | 45.0% |
| !! | AAGGTGTTGTTGGCGATCAA+CGG | + | chr7.4:19675274-19675293 | MS.gene39034:intron | 45.0% |
| !! | CAGTGCCAACAGAGGTATTA+TGG | + | chr7.4:19675536-19675555 | MS.gene39034:intron | 45.0% |
| !! | CTTGTAAGCACTGGAAACAC+CGG | + | chr7.4:19673928-19673947 | MS.gene39034:intron | 45.0% |
| !! | GCCAACAGAGGTATTATGGA+AGG | + | chr7.4:19675540-19675559 | MS.gene39034:intron | 45.0% |
| !! | TCAACACCCGAGTTGATGTT+TGG | + | chr7.4:19674090-19674109 | MS.gene39034:CDS | 45.0% |
| ACACTCTTAACAACAGCCCC+TGG | - | chr7.4:19675302-19675321 | None:intergenic | 50.0% | |
| ACAGACAAAGACACGGACAC+CGG | - | chr7.4:19673607-19673626 | None:intergenic | 50.0% | |
| ACTTCTGTGGTCAACCTCCT+TGG | - | chr7.4:19675151-19675170 | None:intergenic | 50.0% | |
| ATCCGGAACCGTGTTGAAAC+GGG | - | chr7.4:19676871-19676890 | None:intergenic | 50.0% | |
| CACTCTGGGCTTGTCTTATC+AGG | + | chr7.4:19673222-19673241 | MS.gene39034:CDS | 50.0% | |
| CACTCTTAACAACAGCCCCT+GGG | - | chr7.4:19675301-19675320 | None:intergenic | 50.0% | |
| CATAAGGTCCAGGAGTGACT+AGG | - | chr7.4:19676807-19676826 | None:intergenic | 50.0% | |
| CCAAGGTCGTTTCAACACTC+TGG | + | chr7.4:19673207-19673226 | MS.gene39034:CDS | 50.0% | |
| CTAGTCACTCCTGGACCTTA+TGG | + | chr7.4:19676805-19676824 | MS.gene39034:CDS | 50.0% | |
| CTGAATGGGGAGCAGAAGTT+AGG | + | chr7.4:19675370-19675389 | MS.gene39034:intron | 50.0% | |
| GAACAGGGTTTGACCCATGT+TGG | - | chr7.4:19675228-19675247 | None:intergenic | 50.0% | |
| GAGTCTATCAGTGCCAACAG+AGG | + | chr7.4:19675528-19675547 | MS.gene39034:intron | 50.0% | |
| GCTTCGACACCTCTAATCGT+AGG | + | chr7.4:19673509-19673528 | MS.gene39034:intron | 50.0% | |
| GGAGTGACTAGGGTTGTTGA+AGG | - | chr7.4:19676796-19676815 | None:intergenic | 50.0% | |
| TCAACAACCCTAGTCACTCC+TGG | + | chr7.4:19676796-19676815 | MS.gene39034:CDS | 50.0% | |
| TCAACACGGTTCCGGATTTG+TGG | + | chr7.4:19676874-19676893 | MS.gene39034:CDS | 50.0% | |
| TCTTAGGATTCAGGAGGCTG+GGG | + | chr7.4:19674861-19674880 | MS.gene39034:intron | 50.0% | |
| TGCTTCAAATCCAGACACCC+TGG | + | chr7.4:19676422-19676441 | MS.gene39034:intron | 50.0% | |
| TTCCCGTTTCAACACGGTTC+CGG | + | chr7.4:19676866-19676885 | MS.gene39034:CDS | 50.0% | |
| ! | ATGTGACGCACTCTTTTCGC+AGG | + | chr7.4:19674317-19674336 | MS.gene39034:intron | 50.0% |
| ! | TGTGTTGTTCTTGCTCTGGC+AGG | + | chr7.4:19674011-19674030 | MS.gene39034:intron | 50.0% |
| !! | AGGTGTTGTTGGCGATCAAC+GGG | + | chr7.4:19675275-19675294 | MS.gene39034:intron | 50.0% |
| !! | CAACTCGGGTGTTGATGTGA+AGG | - | chr7.4:19674085-19674104 | None:intergenic | 50.0% |
| !! | CCAGAGTGTTGAAACGACCT+TGG | - | chr7.4:19673210-19673229 | None:intergenic | 50.0% |
| CAGATTGCAGCCCCATGTCA+AGG | - | chr7.4:19675853-19675872 | None:intergenic | 55.0% | |
| CGTGACACGCCTACGATTAG+AGG | - | chr7.4:19673521-19673540 | None:intergenic | 55.0% | |
| TGGGGAGCAGAAGTTAGGGT+AGG | + | chr7.4:19675375-19675394 | MS.gene39034:intron | 55.0% | |
| ! | AATGCTGAGACCAGGGTGTC+TGG | - | chr7.4:19676435-19676454 | None:intergenic | 55.0% |
| ACAAGAGGGGGCCACTTCCT+CGG | + | chr7.4:19675646-19675665 | MS.gene39034:intron | 60.0% | |
| GGGGGCCACTTCCTCGGTAT+AGG | + | chr7.4:19675652-19675671 | MS.gene39034:intron | 65.0% | |
| GTTGGCGATCAACGGGCCCA+GGG | + | chr7.4:19675282-19675301 | MS.gene39034:intron | 65.0% | |
| TGTTGGCGATCAACGGGCCC+AGG | + | chr7.4:19675281-19675300 | MS.gene39034:intron | 65.0% | |
| TTGGCGATCAACGGGCCCAG+GGG | + | chr7.4:19675283-19675302 | MS.gene39034:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 19672967 | 19676942 | 19672967 | ID=MS.gene39034 |
| chr7.4 | mRNA | 19672967 | 19676942 | 19672967 | ID=MS.gene39034.t1;Parent=MS.gene39034 |
| chr7.4 | exon | 19672967 | 19672991 | 19672967 | ID=MS.gene39034.t1.exon1;Parent=MS.gene39034.t1 |
| chr7.4 | CDS | 19672967 | 19672991 | 19672967 | ID=cds.MS.gene39034.t1;Parent=MS.gene39034.t1 |
| chr7.4 | exon | 19673143 | 19673243 | 19673143 | ID=MS.gene39034.t1.exon2;Parent=MS.gene39034.t1 |
| chr7.4 | CDS | 19673143 | 19673243 | 19673143 | ID=cds.MS.gene39034.t1;Parent=MS.gene39034.t1 |
| chr7.4 | exon | 19674033 | 19674173 | 19674033 | ID=MS.gene39034.t1.exon3;Parent=MS.gene39034.t1 |
| chr7.4 | CDS | 19674033 | 19674173 | 19674033 | ID=cds.MS.gene39034.t1;Parent=MS.gene39034.t1 |
| chr7.4 | exon | 19674339 | 19674405 | 19674339 | ID=MS.gene39034.t1.exon4;Parent=MS.gene39034.t1 |
| chr7.4 | CDS | 19674339 | 19674405 | 19674339 | ID=cds.MS.gene39034.t1;Parent=MS.gene39034.t1 |
| chr7.4 | exon | 19676791 | 19676942 | 19676791 | ID=MS.gene39034.t1.exon5;Parent=MS.gene39034.t1 |
| chr7.4 | CDS | 19676791 | 19676942 | 19676791 | ID=cds.MS.gene39034.t1;Parent=MS.gene39034.t1 |
| Gene Sequence |
| Protein sequence |
