AlfalfaGEDB | MS.gene050787

M. sativa cultivar XinJiangDaYe / MS.gene050787

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050787.t1	XP_003626158.1	98.9	369	4	0	1	369	111	479	2.10E-208	734.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050787.t1	Q8LEB6	75.8	355	81	1	20	369	96	450	2.7e-156	553.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050787.t1	G7KWG4	98.9	369	4	0	1	369	111	479	1.5e-208	734.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049195	MS.gene050787	0.8227	2.06E-53	-1.69E-46
MS.gene04933	MS.gene050787	0.823258	1.53E-53	-1.69E-46
MS.gene049378	MS.gene050787	0.80307	4.15E-49	-1.69E-46
MS.gene050227	MS.gene050787	0.821701	3.51E-53	-1.69E-46
MS.gene050228	MS.gene050787	0.805715	1.17E-49	-1.69E-46
MS.gene050330	MS.gene050787	-0.802428	5.64E-49	-1.69E-46
MS.gene050442	MS.gene050787	0.812746	3.63E-51	-1.69E-46
MS.gene050558	MS.gene050787	0.836602	8.50E-57	-1.69E-46
MS.gene050560	MS.gene050787	0.82409	9.74E-54	-1.69E-46
MS.gene050787	MS.gene050820	0.827834	1.26E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTTCTCACTCTTCTA+TGG	-	51799:34505-34524	MS.gene050787:intron	30.0%
AAGAGTGATGTTTATAGCTT+TGG	-	51799:33684-33703	MS.gene050787:intron	30.0%
ACTGTTTGATTAAGATTGGA+CGG	-	51799:35360-35379	MS.gene050787:intron	30.0%
ATATTGTAATACTAGACGGT+TGG	+	51799:35211-35230	None:intergenic	30.0%
ATCCAAATCCATCATGATAA+TGG	+	51799:35302-35321	None:intergenic	30.0%
ATGATTTAATGATGAAGTGG+GGG	+	51799:35068-35087	None:intergenic	30.0%
CGCTAAGGAAAACAAAATTA+AGG	+	51799:32578-32597	None:intergenic	30.0%
CTAACATAGTAATAGACAGT+TGG	-	51799:34571-34590	MS.gene050787:intron	30.0%
CTGAAAACATACCATATATG+AGG	+	51799:33143-33162	None:intergenic	30.0%
GGTTATGGAGTTGTTTATAA+GGG	-	51799:32470-32489	MS.gene050787:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
51799	gene	32186	35972	32186	ID=MS.gene050787
51799	mRNA	32186	35972	32186	ID=MS.gene050787.t1;Parent=MS.gene050787
51799	exon	35615	35972	35615	ID=MS.gene050787.t1.exon1;Parent=MS.gene050787.t1
51799	CDS	35615	35972	35615	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	35179	35283	35179	ID=MS.gene050787.t1.exon2;Parent=MS.gene050787.t1
51799	CDS	35179	35283	35179	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	34873	34995	34873	ID=MS.gene050787.t1.exon3;Parent=MS.gene050787.t1
51799	CDS	34873	34995	34873	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	34634	34804	34634	ID=MS.gene050787.t1.exon4;Parent=MS.gene050787.t1
51799	CDS	34634	34804	34634	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	34388	34517	34388	ID=MS.gene050787.t1.exon5;Parent=MS.gene050787.t1
51799	CDS	34388	34517	34388	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	33104	33316	33104	ID=MS.gene050787.t1.exon6;Parent=MS.gene050787.t1
51799	CDS	33104	33316	33104	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	32530	32537	32530	ID=MS.gene050787.t1.exon7;Parent=MS.gene050787.t1
51799	CDS	32530	32537	32530	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799	exon	32186	32369	32186	ID=MS.gene050787.t1.exon8;Parent=MS.gene050787.t1
51799	CDS	32186	32369	32186	ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1

Gene Sequence

>MS.gene050787

GGAAGAAGGTGAAGAATGGTGATAGTAGTAGTCATTCAGATTCATTTCATCAATACATGGAGAGAGATGGGGGTGGAGGGTCACATTCGCAATCAGGTGAAGAAGGTAGTTCAGGAACGGTTACTGTGTACAAACACTCTTCGGCTTCATACCCTATAACAGCTCCTTCGCCTTTATCTGGCCTTCCAGAATTCTCTCACTTAGGTTGGGGTCATTGGTTTACTTTGAGGGATCTTGAACTTGCTACAAACCGGTTTGCGAAAGAAAATGTACTTGGTGAAGGTGGTTATGGAGTTGTTTATAAGGGACAGCTGATCAATGGAAGTCCAGTTGCAGTTAAAAAGATACTCAATAATATGTGAGTTCCATTAGAATGCTGAGTCTAGTTACCTTAATTTTGTTTTCCTTAGCGCCTTTTTGGATTGACTTATTTTAGTTAATCTACTTACATAAGCTCTTGTGAGACTGTTTGGAAGAGCTTACGGAAACAACACATGACATGTTCATAGTTGTTTTCAGCTTATTTCAATAAGCTCTCCATCATAGTCTATGAAAAAAATTTGAATTTATTTTACTTTTTCTTCCAGAAATAGCCTATACATAAACCCTTTTAAAATATGCTCTTGTGCGTCTCCTTATTATTAGACTGAAAATTCAACTTTTAAGTTGTTCTTTTGTGTGTATAACAGTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCAGACACAAAAACTTGGTTCGACTTTTGGGGTTCTGCGTCGAGGGAACTCACAGGTATCCATATTCTCAATTACAAAAGTATGACTGTATGAGTATAATATCCTCAACACACATGATTTTAAAATAATCTGCTTAGCTTTATTAAATAATTTTTGCCGGAATAAATGGTAATCATAATATGAATTGCATGTTCATTAATCTGAAATATATTTTTCCTCATATATGGTATGTTTTCAGGATTCTAGTCTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCCATGCGTCACCATGGCTATCTTACGTGGGAAGCACGCATCAAGATTCTCCTAGGCACAGCCAAAGCGTGAGCCTCTGCATCTATACTTTTCGTTTTCTTTGTAGTCCTTGTATAAAGCAATATACTTGTTTCAGGCTTGCGTATTTGCACGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGACGATGATTTCAATGCTAAGGTTTCTGATTTTGGTCTGGCCAAATTACTGGGTGCTGGGAAGAGTCATGTCACAACTCGAGTTATGGGAACCTTTGGGTCAGTATTTTCTTGCTCTACCCTTGAGAGTGGTGAATTTTTCCCTTGCTAAGTATTGTTATACTTTTTAAGAAAAATCAATTCTTATATGCTTTTTCTCTCTAAATTTTTGACAGATATGTGGCTCCTGAATATGCAAACACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATCACTGGAAGAGATCCAGTTGATTATGGTCGTCCGGCAAATGAAGTGAGTAAACTAATATTATGTCTTTGGGACAAAATTCAGCTTGAAGTATGTGCGTTTGATTGCGATGATTTACTTAATAATCCTGAAGTGTTAGATGTAAGCTTTATTTATTCAATATTGTGCATTTGTGGCTTATCTTCACAAATGTTTCAAATATACTACACCTCATCCTTTTTCCGGTCAATTTGAGAATAAAAGTTGCTTCTATCACTATTAAGAACATATTTGTTCATATTATTAGATACAACGCATACCATTATGTTTTCGATTGTCTGGTGCATGACTGATCTTATGATATTGATACGTGATTTTTAACCATAACCTCATTAGGATGACGTTATGGTTAAAAATTGAGCTGTTAAATCGCAGTTAGGATTCAAAGTTAATTTTCTCTTCTGAAGCGTTCCTTTCAGAAACAGTAAACACATGATAGTCTCAGCAAAGTGTTAGGATTCAAAGTTAATCTTCGCTTCTGAAGCATCCCTTTCAAAAACAGGAAACATGAACAACATTCTCAGGAATGCTAGTAACTATCATGTCCGTGTGTTTTTAGCTGCCCCTACTATTATACTAGAGTTTGTTCCTTCTTGCTGCATACCTTTCAATGGTTACTAGCTAAGCTTTGTGGGTCACAGCTGCCTTACTTTTTAACAACATTTTGAGTGTTACAGATAAGGTGGCATATACATTGAATGATACATTGCAATGATTTTTTTTTTCTTTCTCGAACAGCTAAACATTTCTCACTCTTCTATGGAACAAAATCCATTACTGTGCACTTTTAAACTTTATCCTGTGCTCTAACATAGTAATAGACAGTTGGCATCCTCTAGATTTAGTTTTAATTTGAGTCGTTAATGATTAAATCTAGTTTAAGTTTAACTATGAAGTATGAACTCTGGCCTAGCACCGGCAATTATTATCAGAGGATAGTTTATACAGAGGATTAATTTTGCTCCATTAATATTTATTATTAACAATAAGTGTGTGTTTTTTGTTACTTATTTCTACATGGAAACTTTTTATCAATGGTTTTTATTGACCTTTACTGTGAAACGTCAATGCTCTTAGGTGAATCTAGTTGATTGGCTGAAAATGATGGTTGGAAATAGGAGATCAGAAGAAGTGGTTGACCCAAACATTGAGGTGAAGCCATCAACCAGAGCTTTGAAAAGGGCTCTCTTAACTGCTTTAAGATGTGTGGATCCAGATTCTGAGAAAAGACCTAAGATGAGCCAGGTTGTACGTATGCTGGAGTCGGAGGAATACCCTTTAGCACGAGAGGTTTGTTTTCCCCCCACTTCATCATTAAATCATTAAAAGCTTACTAATGTTACTGTGCTAATACTAAGCCAAGTTAGTGTGGCTTGTTGCAAGTGATAGTTTCCGAAAAATTTATGTCGTGGAGGCAACACTCATACAACTTCTGACGGGATACCAACCGTCTAGTATTACAATATCATATATGTTGGCCGCTAATATATGCATGGAGAGAGAGATTGAAATTGTTGGAAGGACAAAAGTGCCACCATTATCATGATGGATTTGGATTGTGTGTGGTGTGACTGTTTGCAGTTATCCACATCTGGACTGTTTGATTAAGATTGGACGGTGCAGATTTCAATGCAGATTCTGCTCATGTTTTAAATAAAACATACCGAGCTTGAAATCTGGATCAGCCGGTCTTTGATTAGACTGTCCTGATGTGGTTGATTGTGTGCAGTCATAGGATTGTGACTGCACACAATCCAGATCCAAGCTGTCCGACTTGTGATTCCACTACAAGACTTTTTTTTTGTCGCACACTATAAGACATGAAGTTGGTGCAATTGTATAAAATATTTTACCAGCAAGTCAGGTGATCCAACTGTTTATTCATCGTCAGAAAATTGTTATGTGAACAGTTTATTAGAACACAAAAGTTGTTATATTCTCATTCAGAAGATTAATCTTATAATTTTGGTTCATTTTTTCAAAATGAATTTACTGGCATTTTATTTTTTCATTGTCATGTTCAGGATCGAAGGCACAGGAGAAGAAATCAAGGGGGTAGTGCAGAAATCGACTCCCAGAGGGAATTTTCCGACACAGACAGGAGTGAGATTCAGAGTTCTAGAGAAGAGAGCAGAGGGTAACGGTAACGGCACACATGACTCAAAGGCGGATTCTTTTTTAGAATCAATGGTTTACTGGGATGTATAA

Protein sequence

>MS.gene050787.t1

GRRURMVIVVVIQIHFINTWREMGVEGHIRNQVKKVVQERLLCTNTLRLHTLUQLLRLYLAFQNSLTUVGVIGLLUGILNLLQTGLRKKMYLVKVVMELFIRDSUSMEVQLQLKRYSIILVKQRKNLEWKLKLLVMSDTKTWFDFWGSASRELTGFUSMSMSIMETUSNGFMEPCVTMAILRGKHASRFSUAQPKRLRICTKQLSQRWYTEISSQATYULTMISMLRFLILVWPNYWVLGRVMSQLELWEPLDMWLLNMQTLAFUMRRVMFIALVFCYWKESLEEIQLIMVVRQMKUIULIGUKUWLEIGDQKKWLTQTLRUSHQPELUKGLSULLUDVWIQILRKDLRUARLYVCWSRRNTLUHESKSGSKAQEKKSRGUCRNRLPEGIFRHRQEUDSEFURREQRVTVTAHMTQRRILFUNQWFTGMY