AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050787


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTAATATTATGTCTTT+GGG - 51799:33776-33795 MS.gene050787:intron 15.0%
!! TATTACAATATCATATATGT+TGG - 51799:35220-35239 MS.gene050787:CDS 15.0%
!!! AATATATTTTTCCTCATATA+TGG - 51799:33129-33148 MS.gene050787:CDS 15.0%
!!! CTTTATTAAATAATTTTTGC+CGG - 51799:33062-33081 MS.gene050787:intron 15.0%
!!! GAAGATTAATCTTATAATTT+TGG - 51799:35711-35730 MS.gene050787:CDS 15.0%
!!! TTTTTTCAAAATGAATTTAC+TGG - 51799:35738-35757 MS.gene050787:CDS 15.0%
!! ATTATGATTACCATTTATTC+CGG + 51799:33084-33103 None:intergenic 20.0%
!! CAAAATGTTGTTAAAAAGTA+AGG + 51799:34412-34431 None:intergenic 20.0%
!! CAAATTAAAACTAAATCTAG+AGG + 51799:34600-34619 None:intergenic 20.0%
!! GTAAACTAATATTATGTCTT+TGG - 51799:33775-33794 MS.gene050787:intron 20.0%
!! TAAAATAAGTCAATCCAAAA+AGG + 51799:32601-32620 None:intergenic 20.0%
!! TAATGATTTAATGATGAAGT+GGG + 51799:35070-35089 None:intergenic 20.0%
!! TATGATATTGTAATACTAGA+CGG + 51799:35215-35234 None:intergenic 20.0%
!! TTAATGATTTAATGATGAAG+TGG + 51799:35071-35090 None:intergenic 20.0%
!!! ATTTTTTTCATAGACTATGA+TGG + 51799:32726-32745 None:intergenic 20.0%
!!! GAATTTTCAGTCTAATAATA+AGG + 51799:32822-32841 None:intergenic 20.0%
!!! TACTTTTGTAATTGAGAATA+TGG + 51799:32987-33006 None:intergenic 20.0%
!!! TTTTAAAAGGGTTTATGTAT+AGG + 51799:32782-32801 None:intergenic 20.0%
!!! TTTTGTTACTTATTTCTACA+TGG - 51799:34763-34782 MS.gene050787:CDS 20.0%
! AAACTCTAGTATAATAGTAG+GGG + 51799:34330-34349 None:intergenic 25.0%
! AAGTATAACAATACTTAGCA+AGG + 51799:33571-33590 None:intergenic 25.0%
! AATGATTTAATGATGAAGTG+GGG + 51799:35069-35088 None:intergenic 25.0%
! ACAAACTCTAGTATAATAGT+AGG + 51799:34332-34351 None:intergenic 25.0%
! AGATTCATTTCATCAATACA+TGG - 51799:32223-32242 MS.gene050787:CDS 25.0%
! AGTATAACAATACTTAGCAA+GGG + 51799:33570-33589 None:intergenic 25.0%
! CAAACTCTAGTATAATAGTA+GGG + 51799:34331-34350 None:intergenic 25.0%
! CAAGTATATTGCTTTATACA+AGG + 51799:33328-33347 None:intergenic 25.0%
! TAAAGCAATATACTTGTTTC+AGG - 51799:33332-33351 MS.gene050787:intron 25.0%
! TATTCAATATTGTGCATTTG+TGG - 51799:33879-33898 MS.gene050787:intron 25.0%
!! ACAAAAAAAAAGTCTTGTAG+TGG + 51799:35550-35569 None:intergenic 25.0%
!! ACATGGAAACTTTTTATCAA+TGG - 51799:34780-34799 MS.gene050787:CDS 25.0%
!! ACTTTTATTCTCAAATTGAC+CGG + 51799:33950-33969 None:intergenic 25.0%
!! ATAATTTTTGCCGGAATAAA+TGG - 51799:33071-33090 MS.gene050787:intron 25.0%
!! CTAAATTTTTGACAGATATG+TGG - 51799:33626-33645 MS.gene050787:intron 25.0%
!! TTTAGAATCAATGGTTTACT+GGG - 51799:35942-35961 MS.gene050787:CDS 25.0%
!! TTTTTAACCATAACCTCATT+AGG - 51799:34079-34098 MS.gene050787:intron 25.0%
!!! ATTTTTTCATTGTCATGTTC+AGG - 51799:35767-35786 MS.gene050787:CDS 25.0%
!!! CACAAGAGCATATTTTAAAA+GGG + 51799:32794-32813 None:intergenic 25.0%
!!! GGATTCTTTTTTAGAATCAA+TGG - 51799:35933-35952 MS.gene050787:CDS 25.0%
!!! TTTTAAAATCATGTGTGTTG+AGG + 51799:33030-33049 None:intergenic 25.0%
!!! TTTTAGAATCAATGGTTTAC+TGG - 51799:35941-35960 MS.gene050787:CDS 25.0%
AAACATTTCTCACTCTTCTA+TGG - 51799:34505-34524 MS.gene050787:intron 30.0%
AAGAGTGATGTTTATAGCTT+TGG - 51799:33684-33703 MS.gene050787:intron 30.0%
ACTGTTTGATTAAGATTGGA+CGG - 51799:35360-35379 MS.gene050787:intron 30.0%
ATATTGTAATACTAGACGGT+TGG + 51799:35211-35230 None:intergenic 30.0%
ATCCAAATCCATCATGATAA+TGG + 51799:35302-35321 None:intergenic 30.0%
ATGATTTAATGATGAAGTGG+GGG + 51799:35068-35087 None:intergenic 30.0%
CGCTAAGGAAAACAAAATTA+AGG + 51799:32578-32597 None:intergenic 30.0%
CTAACATAGTAATAGACAGT+TGG - 51799:34571-34590 MS.gene050787:intron 30.0%
CTGAAAACATACCATATATG+AGG + 51799:33143-33162 None:intergenic 30.0%
GGTTATGGAGTTGTTTATAA+GGG - 51799:32470-32489 MS.gene050787:intron 30.0%
GTCTATGAGTATGTCAATAA+TGG - 51799:33170-33189 MS.gene050787:CDS 30.0%
TAACTATGAAGTATGAACTC+TGG - 51799:34650-34669 MS.gene050787:CDS 30.0%
TATCCTCTGATAATAATTGC+CGG + 51799:34683-34702 None:intergenic 30.0%
TGAAAATGATGGTTGGAAAT+AGG - 51799:34861-34880 MS.gene050787:intron 30.0%
TGGTTATGGAGTTGTTTATA+AGG - 51799:32469-32488 MS.gene050787:intron 30.0%
TTTCCGAAAAATTTATGTCG+TGG - 51799:35154-35173 MS.gene050787:intron 30.0%
TTTGCGAAAGAAAATGTACT+TGG - 51799:32440-32459 MS.gene050787:intron 30.0%
! AAAGAAAATGTACTTGGTGA+AGG - 51799:32446-32465 MS.gene050787:intron 30.0%
! AAATATTTTACCAGCAAGTC+AGG - 51799:35607-35626 MS.gene050787:intron 30.0%
! AATGCTAAGGTTTCTGATTT+TGG - 51799:33439-33458 MS.gene050787:intron 30.0%
! AGTTTAAAAGTGCACAGTAA+TGG + 51799:34539-34558 None:intergenic 30.0%
! ATAATGGAAACTTAGAGCAA+TGG - 51799:33186-33205 MS.gene050787:CDS 30.0%
! CTCATATATGGTATGTTTTC+AGG - 51799:33141-33160 MS.gene050787:CDS 30.0%
! GTTTATGTATAGGCTATTTC+TGG + 51799:32772-32791 None:intergenic 30.0%
! TTCTTTTGTGTGTATAACAG+TGG - 51799:32855-32874 MS.gene050787:intron 30.0%
!! AAAAACTTGGTTCGACTTTT+GGG - 51799:32933-32952 MS.gene050787:intron 30.0%
!! AGTATCTTTTTAACTGCAAC+TGG + 51799:32515-32534 None:intergenic 30.0%
!! ATGTGTTTACTGTTTCTGAA+AGG + 51799:34179-34198 None:intergenic 30.0%
!! CATTTTGAGTGTTACAGATA+AGG - 51799:34425-34444 MS.gene050787:CDS 30.0%
!! GCACAAGAGCATATTTTAAA+AGG + 51799:32795-32814 None:intergenic 30.0%
!!! CATGTTTCCTGTTTTTGAAA+GGG + 51799:34255-34274 None:intergenic 30.0%
!!! TCATGTTTCCTGTTTTTGAA+AGG + 51799:34256-34275 None:intergenic 30.0%
AAATAGGAGATCAGAAGAAG+TGG - 51799:34877-34896 MS.gene050787:CDS 35.0%
AACACTCATACAACTTCTGA+CGG - 51799:35181-35200 MS.gene050787:CDS 35.0%
AACTAGACTCAGCATTCTAA+TGG + 51799:32554-32573 None:intergenic 35.0%
AAGCTTACATCTAACACTTC+AGG + 51799:33855-33874 None:intergenic 35.0%
AATACTAAGCCAAGTTAGTG+TGG - 51799:35114-35133 MS.gene050787:intron 35.0%
AGAATTCTCTCACTTAGGTT+GGG - 51799:32373-32392 MS.gene050787:intron 35.0%
AGCAGAGAAAGAATTTAGAG+TGG - 51799:32881-32900 MS.gene050787:intron 35.0%
AGTTTACTCACTTCATTTGC+CGG + 51799:33762-33781 None:intergenic 35.0%
ATCAATACATGGAGAGAGAT+GGG - 51799:32234-32253 MS.gene050787:CDS 35.0%
ATGGTTTACTGGGATGTATA+AGG - 51799:35952-35971 MS.gene050787:CDS 35.0%
CACACTATAAGACATGAAGT+TGG - 51799:35572-35591 MS.gene050787:intron 35.0%
CATCACTCTTCTCATTTAGA+AGG + 51799:33674-33693 None:intergenic 35.0%
CCAGACAATCGAAAACATAA+TGG + 51799:34027-34046 None:intergenic 35.0%
CTATTACTATGTTAGAGCAC+AGG + 51799:34566-34585 None:intergenic 35.0%
CTGGACTGTTTGATTAAGAT+TGG - 51799:35356-35375 MS.gene050787:intron 35.0%
CTTAGCTAGTAACCATTGAA+AGG + 51799:34371-34390 None:intergenic 35.0%
CTTAGGTGAATCTAGTTGAT+TGG - 51799:34837-34856 MS.gene050787:intron 35.0%
GAAAAATTCACCACTCTCAA+GGG + 51799:33548-33567 None:intergenic 35.0%
GAAACATGAACAACATTCTC+AGG - 51799:34267-34286 MS.gene050787:intron 35.0%
GAGAGAGAGATTGAAATTGT+TGG - 51799:35260-35279 MS.gene050787:CDS 35.0%
GAGAGATTGAAATTGTTGGA+AGG - 51799:35264-35283 MS.gene050787:CDS 35.0%
TACTGTGTACAAACACTCTT+CGG - 51799:32307-32326 MS.gene050787:CDS 35.0%
TCAGAGGATAGTTTATACAG+AGG - 51799:34693-34712 MS.gene050787:CDS 35.0%
TCATGTCAGACACAAAAACT+TGG - 51799:32920-32939 MS.gene050787:intron 35.0%
TCTCTCCATGCATATATTAG+CGG + 51799:35246-35265 None:intergenic 35.0%
TCTGACGATGAATAAACAGT+TGG + 51799:35637-35656 None:intergenic 35.0%
TGACGATGATTTCAATGCTA+AGG - 51799:33426-33445 MS.gene050787:intron 35.0%
TGATTTAATGATGAAGTGGG+GGG + 51799:35067-35086 None:intergenic 35.0%
TTAATCAAACAGTCCAGATG+TGG + 51799:35353-35372 None:intergenic 35.0%
TTCTCAAATTGACCGGAAAA+AGG + 51799:33943-33962 None:intergenic 35.0%
TTTGAGTGTTACAGATAAGG+TGG - 51799:34428-34447 MS.gene050787:CDS 35.0%
! AACGAAAAGTATAGATGCAG+AGG + 51799:33294-33313 None:intergenic 35.0%
! AGTTGATTGGCTGAAAATGA+TGG - 51799:34850-34869 MS.gene050787:intron 35.0%
! CCATTATGTTTTCGATTGTC+TGG - 51799:34024-34043 MS.gene050787:intron 35.0%
! CCTCCACGACATAAATTTTT+CGG + 51799:35160-35179 None:intergenic 35.0%
! GTACATTTTCTTTCGCAAAC+CGG + 51799:32439-32458 None:intergenic 35.0%
! TGTTGCTTGACTTGATATCT+CGG + 51799:33399-33418 None:intergenic 35.0%
! TTAGGTCTTTTCTCAGAATC+TGG + 51799:34980-34999 None:intergenic 35.0%
!! AAAACTTGGTTCGACTTTTG+GGG - 51799:32934-32953 MS.gene050787:intron 35.0%
!! ATCAACCAGAGCTTTGAAAA+GGG - 51799:34925-34944 MS.gene050787:CDS 35.0%
!! ATCTTGAACTTGCTACAAAC+CGG - 51799:32417-32436 MS.gene050787:intron 35.0%
!! CAAAAACTTGGTTCGACTTT+TGG - 51799:32932-32951 MS.gene050787:intron 35.0%
!! CAAATCCATCATGATAATGG+TGG + 51799:35299-35318 None:intergenic 35.0%
!! CACCATTATCATGATGGATT+TGG - 51799:35297-35316 MS.gene050787:intron 35.0%
!! CTTAACTGCTTTAAGATGTG+TGG - 51799:34952-34971 MS.gene050787:CDS 35.0%
!! TAAGGTTTCTGATTTTGGTC+TGG - 51799:33444-33463 MS.gene050787:intron 35.0%
!!! TAGCTTTGGTGTTTTGCTAT+TGG - 51799:33698-33717 MS.gene050787:intron 35.0%
!!! TTTGGTGTTTTGCTATTGGA+AGG - 51799:33702-33721 MS.gene050787:intron 35.0%
AAACAAACCTCTCGTGCTAA+AGG + 51799:35043-35062 None:intergenic 40.0%
AACAAACCTCTCGTGCTAAA+GGG + 51799:35042-35061 None:intergenic 40.0%
AACATACCGAGCTTGAAATC+TGG - 51799:35422-35441 MS.gene050787:intron 40.0%
AACTTAGAGCAATGGCTTCA+TGG - 51799:33194-33213 MS.gene050787:CDS 40.0%
AAGTGCCACCATTATCATGA+TGG - 51799:35291-35310 MS.gene050787:intron 40.0%
AATTGACCGGAAAAAGGATG+AGG + 51799:33937-33956 None:intergenic 40.0%
ACACTCATACAACTTCTGAC+GGG - 51799:35182-35201 MS.gene050787:CDS 40.0%
ACCATAACGTCATCCTAATG+AGG + 51799:34095-34114 None:intergenic 40.0%
ACCTCATTAGGATGACGTTA+TGG - 51799:34091-34110 MS.gene050787:intron 40.0%
ACGTCATCCTAATGAGGTTA+TGG + 51799:34089-34108 None:intergenic 40.0%
AGACTGTTTGGAAGAGCTTA+CGG - 51799:32648-32667 MS.gene050787:intron 40.0%
AGAGTGGAAGTTGAAGCTAT+TGG - 51799:32897-32916 MS.gene050787:intron 40.0%
AGGACAGTCTAATCAAAGAC+CGG + 51799:35453-35472 None:intergenic 40.0%
ATGGCTTCACCTCAATGTTT+GGG + 51799:34907-34926 None:intergenic 40.0%
ATTGTCATGTTCAGGATCGA+AGG - 51799:35775-35794 MS.gene050787:CDS 40.0%
CAACCTAAGTGAGAGAATTC+TGG + 51799:32374-32393 None:intergenic 40.0%
CAGAATTCTCTCACTTAGGT+TGG - 51799:32372-32391 MS.gene050787:intron 40.0%
CATCAATACATGGAGAGAGA+TGG - 51799:32233-32252 MS.gene050787:CDS 40.0%
CATGTCACAACTCGAGTTAT+GGG - 51799:33493-33512 MS.gene050787:intron 40.0%
CCGAAAAATTTATGTCGTGG+AGG - 51799:35157-35176 MS.gene050787:intron 40.0%
CTAAGTGAGAGAATTCTGGA+AGG + 51799:32370-32389 None:intergenic 40.0%
CTTCCAGAATTCTCTCACTT+AGG - 51799:32368-32387 MS.gene050787:intron 40.0%
GCAAGAAAATACTGACCCAA+AGG + 51799:33521-33540 None:intergenic 40.0%
GGAAAAATTCACCACTCTCA+AGG + 51799:33549-33568 None:intergenic 40.0%
GGAAGAGATCCAGTTGATTA+TGG - 51799:33732-33751 MS.gene050787:intron 40.0%
TAAGCTCTTGTGAGACTGTT+TGG - 51799:32636-32655 MS.gene050787:intron 40.0%
TATAAGGGACAGCTGATCAA+TGG - 51799:32485-32504 MS.gene050787:intron 40.0%
TCAATACATGGAGAGAGATG+GGG - 51799:32235-32254 MS.gene050787:CDS 40.0%
TCATGTCACAACTCGAGTTA+TGG - 51799:33492-33511 MS.gene050787:intron 40.0%
TCTTGCTGCATACCTTTCAA+TGG - 51799:34356-34375 MS.gene050787:intron 40.0%
TGAAGAAGGTAGTTCAGGAA+CGG - 51799:32283-32302 MS.gene050787:CDS 40.0%
TGAGCTGTTAAATCGCAGTT+AGG - 51799:34122-34141 MS.gene050787:intron 40.0%
TGATAATAATTGCCGGTGCT+AGG + 51799:34676-34695 None:intergenic 40.0%
TGGTTACTAGCTAAGCTTTG+TGG - 51799:34376-34395 MS.gene050787:intron 40.0%
TGTGAAACGTCAATGCTCTT+AGG - 51799:34820-34839 MS.gene050787:intron 40.0%
TGTTTGCAGTTATCCACATC+TGG - 51799:35337-35356 MS.gene050787:intron 40.0%
TTGATTAGACTGTCCTGATG+TGG - 51799:35457-35476 MS.gene050787:intron 40.0%
TTTGGTCTGGCCAAATTACT+GGG - 51799:33457-33476 MS.gene050787:intron 40.0%
! AATTCTGGAAGGCCAGATAA+AGG + 51799:32359-32378 None:intergenic 40.0%
! ACTACACCTCATCCTTTTTC+CGG - 51799:33928-33947 MS.gene050787:intron 40.0%
! CTTGTAGTGGAATCACAAGT+CGG + 51799:35537-35556 None:intergenic 40.0%
! GAAAATGTACTTGGTGAAGG+TGG - 51799:32449-32468 MS.gene050787:intron 40.0%
! GAAGCATCCCTTTCAAAAAC+AGG - 51799:34245-34264 MS.gene050787:intron 40.0%
! GAATTCTCTCACTTAGGTTG+GGG - 51799:32374-32393 MS.gene050787:intron 40.0%
! GATAGTCTCAGCAAAGTGTT+AGG - 51799:34199-34218 MS.gene050787:intron 40.0%
! GATTGGCTGAAAATGATGGT+TGG - 51799:34854-34873 MS.gene050787:intron 40.0%
! GCATTGACGTTTCACAGTAA+AGG + 51799:34816-34835 None:intergenic 40.0%
! GGTTACTAGCTAAGCTTTGT+GGG - 51799:34377-34396 MS.gene050787:intron 40.0%
! TGTTTTCCTTAGCGCCTTTT+TGG - 51799:32584-32603 MS.gene050787:intron 40.0%
! TTGAAAGGTATGCAGCAAGA+AGG + 51799:34356-34375 None:intergenic 40.0%
! TTGCTATTGGAAGGAATCAC+TGG - 51799:33711-33730 MS.gene050787:intron 40.0%
! TTTTGGTCTGGCCAAATTAC+TGG - 51799:33456-33475 MS.gene050787:intron 40.0%
!! CATCAACCAGAGCTTTGAAA+AGG - 51799:34924-34943 MS.gene050787:CDS 40.0%
!! CTTTTCAAAGCTCTGGTTGA+TGG + 51799:34926-34945 None:intergenic 40.0%
!! GGGTCATTGGTTTACTTTGA+GGG - 51799:32394-32413 MS.gene050787:intron 40.0%
!! TGATGGATTTGGATTGTGTG+TGG - 51799:35308-35327 MS.gene050787:intron 40.0%
AAAGGCGAAGGAGCTGTTAT+AGG + 51799:32341-32360 None:intergenic 45.0%
AAGGCGAAGGAGCTGTTATA+GGG + 51799:32340-32359 None:intergenic 45.0%
AATCTCACTCCTGTCTGTGT+CGG + 51799:35856-35875 None:intergenic 45.0%
ACTCGAGTTATGGGAACCTT+TGG - 51799:33502-33521 MS.gene050787:intron 45.0%
AGCTTGAAATCTGGATCAGC+CGG - 51799:35431-35450 MS.gene050787:intron 45.0%
AGGCACAGGAGAAGAAATCA+AGG - 51799:35795-35814 MS.gene050787:CDS 45.0%
AGGCCAGTGTTTGCATATTC+AGG + 51799:33654-33673 None:intergenic 45.0%
AGTGGTTGACCCAAACATTG+AGG - 51799:34895-34914 MS.gene050787:CDS 45.0%
CAATACATGGAGAGAGATGG+GGG - 51799:32236-32255 MS.gene050787:CDS 45.0%
CACAGGAGAAGAAATCAAGG+GGG - 51799:35798-35817 MS.gene050787:CDS 45.0%
CATTCGCAATCAGGTGAAGA+AGG - 51799:32269-32288 MS.gene050787:CDS 45.0%
CTCGAGTTATGGGAACCTTT+GGG - 51799:33503-33522 MS.gene050787:intron 45.0%
GAAAAGACCTAAGATGAGCC+AGG - 51799:34988-35007 MS.gene050787:intron 45.0%
GATGGCTTCACCTCAATGTT+TGG + 51799:34908-34927 None:intergenic 45.0%
GCACAGGAGAAGAAATCAAG+GGG - 51799:35797-35816 MS.gene050787:CDS 45.0%
GCTCCTGAATATGCAAACAC+TGG - 51799:33648-33667 MS.gene050787:intron 45.0%
GCTGATCCAGATTTCAAGCT+CGG + 51799:35431-35450 None:intergenic 45.0%
GGCACAGGAGAAGAAATCAA+GGG - 51799:35796-35815 MS.gene050787:CDS 45.0%
GGTTGATTGTGTGCAGTCAT+AGG - 51799:35478-35497 MS.gene050787:intron 45.0%
GTTGGCCGCTAATATATGCA+TGG - 51799:35238-35257 MS.gene050787:CDS 45.0%
TAACGGCACACATGACTCAA+AGG - 51799:35909-35928 MS.gene050787:CDS 45.0%
TAGGGGCAGCTAAAAACACA+CGG + 51799:34313-34332 None:intergenic 45.0%
TCACCATGGCTATCTTACGT+GGG - 51799:33226-33245 MS.gene050787:CDS 45.0%
TCAGGTGAAGAAGGTAGTTC+AGG - 51799:32278-32297 MS.gene050787:CDS 45.0%
TCCAGTTGATTATGGTCGTC+CGG - 51799:33740-33759 MS.gene050787:intron 45.0%
TGCAACAAGCCACACTAACT+TGG + 51799:35126-35145 None:intergenic 45.0%
TGCACACAATCAACCACATC+AGG + 51799:35473-35492 None:intergenic 45.0%
TGTGTCGGAAAATTCCCTCT+GGG + 51799:35841-35860 None:intergenic 45.0%
! ATATCTCGGTGTACCACCTT+TGG + 51799:33385-33404 None:intergenic 45.0%
! GCACCGGCAATTATTATCAG+AGG - 51799:34677-34696 MS.gene050787:CDS 45.0%
! GTACTTGGTGAAGGTGGTTA+TGG - 51799:32455-32474 MS.gene050787:intron 45.0%
!! AGTTCTAGAGAAGAGAGCAG+AGG - 51799:35879-35898 MS.gene050787:CDS 45.0%
!! GGGGTCATTGGTTTACTTTG+AGG - 51799:32393-32412 MS.gene050787:intron 45.0%
!! GTCAATCCAAAAAGGCGCTA+AGG + 51799:32593-32612 None:intergenic 45.0%
!! GTTCTAGAGAAGAGAGCAGA+GGG - 51799:35880-35899 MS.gene050787:CDS 45.0%
!! TTGTTAATAATAAATATTAA+TGG + 51799:34731-34750 None:intergenic 5.0%
ACAGCTCCTTCGCCTTTATC+TGG - 51799:32344-32363 MS.gene050787:CDS 50.0%
ACTCCAGCATACGTACAACC+TGG + 51799:35009-35028 None:intergenic 50.0%
CGAAGCAATTGAGCCAAAGG+TGG - 51799:33369-33388 MS.gene050787:intron 50.0%
CGTACAACCTGGCTCATCTT+AGG + 51799:34998-35017 None:intergenic 50.0%
CTGTGTCGGAAAATTCCCTC+TGG + 51799:35842-35861 None:intergenic 50.0%
CTTCCCACGTAAGATAGCCA+TGG + 51799:33232-33251 None:intergenic 50.0%
CTTCCCAGCACCCAGTAATT+TGG + 51799:33470-33489 None:intergenic 50.0%
GAATCACAAGTCGGACAGCT+TGG + 51799:35528-35547 None:intergenic 50.0%
GAGAAGAGAGCAGAGGGTAA+CGG - 51799:35886-35905 MS.gene050787:CDS 50.0%
GCACGAAGCAATTGAGCCAA+AGG - 51799:33366-33385 MS.gene050787:intron 50.0%
GCACGCATCAAGATTCTCCT+AGG - 51799:33251-33270 MS.gene050787:CDS 50.0%
GGAATACCCTTTAGCACGAG+AGG - 51799:35033-35052 MS.gene050787:intron 50.0%
GGTTGTACGTATGCTGGAGT+CGG - 51799:35009-35028 MS.gene050787:intron 50.0%
GTCACCATGGCTATCTTACG+TGG - 51799:33225-33244 MS.gene050787:CDS 50.0%
TATGAACTCTGGCCTAGCAC+CGG - 51799:34661-34680 MS.gene050787:CDS 50.0%
TCTTGCTCTACCCTTGAGAG+TGG - 51799:33535-33554 MS.gene050787:intron 50.0%
TGGCCAAATTACTGGGTGCT+GGG - 51799:33464-33483 MS.gene050787:intron 50.0%
! AAGATAGCCATGGTGACGCA+TGG + 51799:33222-33241 None:intergenic 50.0%
! AGAGCAGAGGGTAACGGTAA+CGG - 51799:35892-35911 MS.gene050787:CDS 50.0%
! AGTTGGATCACCTGACTTGC+TGG + 51799:35620-35639 None:intergenic 50.0%
! ATGTTCAGGATCGAAGGCAC+AGG - 51799:35781-35800 MS.gene050787:CDS 50.0%
! GAGAGCCCTTTTCAAAGCTC+TGG + 51799:34933-34952 None:intergenic 50.0%
! GGGAATTTTCCGACACAGAC+AGG - 51799:35844-35863 MS.gene050787:CDS 50.0%
! TGCAGAAATCGACTCCCAGA+GGG - 51799:35824-35843 MS.gene050787:CDS 50.0%
!! CTCACTTAGGTTGGGGTCAT+TGG - 51799:32381-32400 MS.gene050787:intron 50.0%
AGATGCAGAGGCTCACGCTT+TGG + 51799:33282-33301 None:intergenic 55.0%
CAAGTCGGACAGCTTGGATC+TGG + 51799:35522-35541 None:intergenic 55.0%
CGGCACACATGACTCAAAGG+CGG - 51799:35912-35931 MS.gene050787:CDS 55.0%
CTGGCCAAATTACTGGGTGC+TGG - 51799:33463-33482 MS.gene050787:intron 55.0%
GAGCCAGGTTGTACGTATGC+TGG - 51799:35003-35022 MS.gene050787:intron 55.0%
GCCGGACGACCATAATCAAC+TGG + 51799:33744-33763 None:intergenic 55.0%
GGAAGGCCAGATAAAGGCGA+AGG + 51799:32353-32372 None:intergenic 55.0%
GGAGGGTCACATTCGCAATC+AGG - 51799:32260-32279 MS.gene050787:CDS 55.0%
TACATGGAGAGAGATGGGGG+TGG - 51799:32239-32258 MS.gene050787:CDS 55.0%
TGTACGTATGCTGGAGTCGG+AGG - 51799:35012-35031 MS.gene050787:intron 55.0%
! GTGCAGAAATCGACTCCCAG+AGG - 51799:35823-35842 MS.gene050787:CDS 55.0%
!!! ACTTTTGGGGTTCTGCGTCG+AGG - 51799:32947-32966 MS.gene050787:intron 55.0%
!!! CTTTTGGGGTTCTGCGTCGA+GGG - 51799:32948-32967 MS.gene050787:intron 55.0%
ATGGAGAGAGATGGGGGTGG+AGG - 51799:32242-32261 MS.gene050787:CDS 60.0%
CATGGAGCCATGCGTCACCA+TGG - 51799:33212-33231 MS.gene050787:CDS 60.0%
CTCACGCTTTGGCTGTGCCT+AGG + 51799:33271-33290 None:intergenic 60.0%
TCTGCGTCGAGGGAACTCAC+AGG - 51799:32958-32977 MS.gene050787:intron 60.0%
TGGAGAGAGATGGGGGTGGA+GGG - 51799:32243-32262 MS.gene050787:CDS 60.0%


Chromosome Type Strat End Strand Name
51799 gene 32186 35972 32186 ID=MS.gene050787
51799 mRNA 32186 35972 32186 ID=MS.gene050787.t1;Parent=MS.gene050787
51799 exon 35615 35972 35615 ID=MS.gene050787.t1.exon1;Parent=MS.gene050787.t1
51799 CDS 35615 35972 35615 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 35179 35283 35179 ID=MS.gene050787.t1.exon2;Parent=MS.gene050787.t1
51799 CDS 35179 35283 35179 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 34873 34995 34873 ID=MS.gene050787.t1.exon3;Parent=MS.gene050787.t1
51799 CDS 34873 34995 34873 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 34634 34804 34634 ID=MS.gene050787.t1.exon4;Parent=MS.gene050787.t1
51799 CDS 34634 34804 34634 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 34388 34517 34388 ID=MS.gene050787.t1.exon5;Parent=MS.gene050787.t1
51799 CDS 34388 34517 34388 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 33104 33316 33104 ID=MS.gene050787.t1.exon6;Parent=MS.gene050787.t1
51799 CDS 33104 33316 33104 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 32530 32537 32530 ID=MS.gene050787.t1.exon7;Parent=MS.gene050787.t1
51799 CDS 32530 32537 32530 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
51799 exon 32186 32369 32186 ID=MS.gene050787.t1.exon8;Parent=MS.gene050787.t1
51799 CDS 32186 32369 32186 ID=cds.MS.gene050787.t1;Parent=MS.gene050787.t1
Gene Sequence

>MS.gene050787

GGAAGAAGGTGAAGAATGGTGATAGTAGTAGTCATTCAGATTCATTTCATCAATACATGGAGAGAGATGGGGGTGGAGGGTCACATTCGCAATCAGGTGAAGAAGGTAGTTCAGGAACGGTTACTGTGTACAAACACTCTTCGGCTTCATACCCTATAACAGCTCCTTCGCCTTTATCTGGCCTTCCAGAATTCTCTCACTTAGGTTGGGGTCATTGGTTTACTTTGAGGGATCTTGAACTTGCTACAAACCGGTTTGCGAAAGAAAATGTACTTGGTGAAGGTGGTTATGGAGTTGTTTATAAGGGACAGCTGATCAATGGAAGTCCAGTTGCAGTTAAAAAGATACTCAATAATATGTGAGTTCCATTAGAATGCTGAGTCTAGTTACCTTAATTTTGTTTTCCTTAGCGCCTTTTTGGATTGACTTATTTTAGTTAATCTACTTACATAAGCTCTTGTGAGACTGTTTGGAAGAGCTTACGGAAACAACACATGACATGTTCATAGTTGTTTTCAGCTTATTTCAATAAGCTCTCCATCATAGTCTATGAAAAAAATTTGAATTTATTTTACTTTTTCTTCCAGAAATAGCCTATACATAAACCCTTTTAAAATATGCTCTTGTGCGTCTCCTTATTATTAGACTGAAAATTCAACTTTTAAGTTGTTCTTTTGTGTGTATAACAGTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCAGACACAAAAACTTGGTTCGACTTTTGGGGTTCTGCGTCGAGGGAACTCACAGGTATCCATATTCTCAATTACAAAAGTATGACTGTATGAGTATAATATCCTCAACACACATGATTTTAAAATAATCTGCTTAGCTTTATTAAATAATTTTTGCCGGAATAAATGGTAATCATAATATGAATTGCATGTTCATTAATCTGAAATATATTTTTCCTCATATATGGTATGTTTTCAGGATTCTAGTCTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCCATGCGTCACCATGGCTATCTTACGTGGGAAGCACGCATCAAGATTCTCCTAGGCACAGCCAAAGCGTGAGCCTCTGCATCTATACTTTTCGTTTTCTTTGTAGTCCTTGTATAAAGCAATATACTTGTTTCAGGCTTGCGTATTTGCACGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGACGATGATTTCAATGCTAAGGTTTCTGATTTTGGTCTGGCCAAATTACTGGGTGCTGGGAAGAGTCATGTCACAACTCGAGTTATGGGAACCTTTGGGTCAGTATTTTCTTGCTCTACCCTTGAGAGTGGTGAATTTTTCCCTTGCTAAGTATTGTTATACTTTTTAAGAAAAATCAATTCTTATATGCTTTTTCTCTCTAAATTTTTGACAGATATGTGGCTCCTGAATATGCAAACACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATCACTGGAAGAGATCCAGTTGATTATGGTCGTCCGGCAAATGAAGTGAGTAAACTAATATTATGTCTTTGGGACAAAATTCAGCTTGAAGTATGTGCGTTTGATTGCGATGATTTACTTAATAATCCTGAAGTGTTAGATGTAAGCTTTATTTATTCAATATTGTGCATTTGTGGCTTATCTTCACAAATGTTTCAAATATACTACACCTCATCCTTTTTCCGGTCAATTTGAGAATAAAAGTTGCTTCTATCACTATTAAGAACATATTTGTTCATATTATTAGATACAACGCATACCATTATGTTTTCGATTGTCTGGTGCATGACTGATCTTATGATATTGATACGTGATTTTTAACCATAACCTCATTAGGATGACGTTATGGTTAAAAATTGAGCTGTTAAATCGCAGTTAGGATTCAAAGTTAATTTTCTCTTCTGAAGCGTTCCTTTCAGAAACAGTAAACACATGATAGTCTCAGCAAAGTGTTAGGATTCAAAGTTAATCTTCGCTTCTGAAGCATCCCTTTCAAAAACAGGAAACATGAACAACATTCTCAGGAATGCTAGTAACTATCATGTCCGTGTGTTTTTAGCTGCCCCTACTATTATACTAGAGTTTGTTCCTTCTTGCTGCATACCTTTCAATGGTTACTAGCTAAGCTTTGTGGGTCACAGCTGCCTTACTTTTTAACAACATTTTGAGTGTTACAGATAAGGTGGCATATACATTGAATGATACATTGCAATGATTTTTTTTTTCTTTCTCGAACAGCTAAACATTTCTCACTCTTCTATGGAACAAAATCCATTACTGTGCACTTTTAAACTTTATCCTGTGCTCTAACATAGTAATAGACAGTTGGCATCCTCTAGATTTAGTTTTAATTTGAGTCGTTAATGATTAAATCTAGTTTAAGTTTAACTATGAAGTATGAACTCTGGCCTAGCACCGGCAATTATTATCAGAGGATAGTTTATACAGAGGATTAATTTTGCTCCATTAATATTTATTATTAACAATAAGTGTGTGTTTTTTGTTACTTATTTCTACATGGAAACTTTTTATCAATGGTTTTTATTGACCTTTACTGTGAAACGTCAATGCTCTTAGGTGAATCTAGTTGATTGGCTGAAAATGATGGTTGGAAATAGGAGATCAGAAGAAGTGGTTGACCCAAACATTGAGGTGAAGCCATCAACCAGAGCTTTGAAAAGGGCTCTCTTAACTGCTTTAAGATGTGTGGATCCAGATTCTGAGAAAAGACCTAAGATGAGCCAGGTTGTACGTATGCTGGAGTCGGAGGAATACCCTTTAGCACGAGAGGTTTGTTTTCCCCCCACTTCATCATTAAATCATTAAAAGCTTACTAATGTTACTGTGCTAATACTAAGCCAAGTTAGTGTGGCTTGTTGCAAGTGATAGTTTCCGAAAAATTTATGTCGTGGAGGCAACACTCATACAACTTCTGACGGGATACCAACCGTCTAGTATTACAATATCATATATGTTGGCCGCTAATATATGCATGGAGAGAGAGATTGAAATTGTTGGAAGGACAAAAGTGCCACCATTATCATGATGGATTTGGATTGTGTGTGGTGTGACTGTTTGCAGTTATCCACATCTGGACTGTTTGATTAAGATTGGACGGTGCAGATTTCAATGCAGATTCTGCTCATGTTTTAAATAAAACATACCGAGCTTGAAATCTGGATCAGCCGGTCTTTGATTAGACTGTCCTGATGTGGTTGATTGTGTGCAGTCATAGGATTGTGACTGCACACAATCCAGATCCAAGCTGTCCGACTTGTGATTCCACTACAAGACTTTTTTTTTGTCGCACACTATAAGACATGAAGTTGGTGCAATTGTATAAAATATTTTACCAGCAAGTCAGGTGATCCAACTGTTTATTCATCGTCAGAAAATTGTTATGTGAACAGTTTATTAGAACACAAAAGTTGTTATATTCTCATTCAGAAGATTAATCTTATAATTTTGGTTCATTTTTTCAAAATGAATTTACTGGCATTTTATTTTTTCATTGTCATGTTCAGGATCGAAGGCACAGGAGAAGAAATCAAGGGGGTAGTGCAGAAATCGACTCCCAGAGGGAATTTTCCGACACAGACAGGAGTGAGATTCAGAGTTCTAGAGAAGAGAGCAGAGGGTAACGGTAACGGCACACATGACTCAAAGGCGGATTCTTTTTTAGAATCAATGGTTTACTGGGATGTATAA

Protein sequence

>MS.gene050787.t1

GRRURMVIVVVIQIHFINTWREMGVEGHIRNQVKKVVQERLLCTNTLRLHTLUQLLRLYLAFQNSLTUVGVIGLLUGILNLLQTGLRKKMYLVKVVMELFIRDSUSMEVQLQLKRYSIILVKQRKNLEWKLKLLVMSDTKTWFDFWGSASRELTGFUSMSMSIMETUSNGFMEPCVTMAILRGKHASRFSUAQPKRLRICTKQLSQRWYTEISSQATYULTMISMLRFLILVWPNYWVLGRVMSQLELWEPLDMWLLNMQTLAFUMRRVMFIALVFCYWKESLEEIQLIMVVRQMKUIULIGUKUWLEIGDQKKWLTQTLRUSHQPELUKGLSULLUDVWIQILRKDLRUARLYVCWSRRNTLUHESKSGSKAQEKKSRGUCRNRLPEGIFRHRQEUDSEFURREQRVTVTAHMTQRRILFUNQWFTGMY