Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39091.t1 | XP_003625087.2 | 86 | 250 | 35 | 0 | 1 | 250 | 1 | 250 | 7.70E-124 | 453.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39091.t1 | G7KSK5 | 86.0 | 250 | 35 | 0 | 1 | 250 | 1 | 250 | 5.5e-124 | 453.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051535 | MS.gene39091 | 0.813342 | 2.69E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39091.t1 | MTR_7g090780 | 94.400 | 250 | 14 | 0 | 1 | 250 | 1 | 250 | 6.45e-164 | 457 |
| MS.gene39091.t1 | MTR_7g090860 | 76.113 | 247 | 58 | 1 | 1 | 246 | 1 | 247 | 6.44e-123 | 361 |
| MS.gene39091.t1 | MTR_7g090800 | 68.254 | 252 | 77 | 3 | 1 | 250 | 1 | 251 | 7.64e-120 | 345 |
| MS.gene39091.t1 | MTR_7g090780 | 93.583 | 187 | 12 | 0 | 64 | 250 | 1 | 187 | 1.01e-113 | 327 |
| MS.gene39091.t1 | MTR_7g090820 | 71.713 | 251 | 53 | 4 | 1 | 251 | 1 | 233 | 4.88e-110 | 322 |
| MS.gene39091.t1 | MTR_7g090830 | 69.565 | 230 | 63 | 2 | 19 | 248 | 3 | 225 | 1.81e-108 | 316 |
| MS.gene39091.t1 | MTR_7g090775 | 73.973 | 219 | 50 | 3 | 34 | 250 | 14 | 227 | 4.24e-103 | 301 |
| MS.gene39091.t1 | MTR_1g051750 | 42.083 | 240 | 106 | 7 | 5 | 233 | 4 | 221 | 2.22e-55 | 178 |
| MS.gene39091.t1 | MTR_3g023510 | 46.154 | 104 | 55 | 1 | 25 | 127 | 24 | 127 | 2.07e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39091.t1 | AT5G03990 | 49.686 | 159 | 70 | 3 | 1 | 154 | 1 | 154 | 1.69e-42 | 147 |
| MS.gene39091.t1 | AT3G51940 | 47.619 | 105 | 54 | 1 | 25 | 128 | 20 | 124 | 1.52e-30 | 119 |
| MS.gene39091.t1 | AT3G51940 | 52.174 | 92 | 43 | 1 | 38 | 128 | 37 | 128 | 6.12e-30 | 117 |
| MS.gene39091.t1 | AT5G03990 | 54.945 | 91 | 38 | 1 | 64 | 154 | 1 | 88 | 1.03e-25 | 102 |
Find 78 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATCCCAATGTGGTAAAT+TGG | 0.166892 | 7.4:+17997290 | MS.gene39091:CDS |
| CAAAGGTGGCTTTCCTTTAT+AGG | 0.179989 | 7.4:-17995819 | None:intergenic |
| TAATTACTGAAATGGATAAT+TGG | 0.271436 | 7.4:+17995738 | None:intergenic |
| TGTCGACCCCGAACTTTATC+TGG | 0.292705 | 7.4:+17997444 | MS.gene39091:CDS |
| GGCGAGGCAGCCGTGATTCT+TGG | 0.305461 | 7.4:+17997511 | MS.gene39091:CDS |
| CGCCGCAACATGGAAGAAAA+AGG | 0.329418 | 7.4:+17997490 | MS.gene39091:CDS |
| TGACCCTTTAGCAGCTTCAT+AGG | 0.335346 | 7.4:-17998090 | None:intergenic |
| CGCCAACCATATTCCTTTGA+AGG | 0.340454 | 7.4:-17997721 | None:intergenic |
| GGATGGGGACCTACTGGATG+GGG | 0.344597 | 7.4:+17997571 | MS.gene39091:CDS |
| GTTGAACCTTCAAAGGAATA+TGG | 0.345372 | 7.4:+17997715 | MS.gene39091:CDS |
| TCCATCCATGATAATCATTC+TGG | 0.346408 | 7.4:-17997750 | None:intergenic |
| GATGGGGACCTACTGGATGG+GGG | 0.369719 | 7.4:+17997572 | MS.gene39091:CDS |
| AAATCCTCATCGTCCTATAA+AGG | 0.372642 | 7.4:+17995806 | MS.gene39091:CDS |
| TTCCACATCCAGATAAAGTT+CGG | 0.380635 | 7.4:-17997452 | None:intergenic |
| TCCACATCCAGATAAAGTTC+GGG | 0.382465 | 7.4:-17997451 | None:intergenic |
| CTATAAAGGAAAGCCACCTT+TGG | 0.390395 | 7.4:+17995820 | MS.gene39091:CDS |
| AAGGAATATGGTTGGCGAAA+TGG | 0.391675 | 7.4:+17997727 | MS.gene39091:CDS |
| CTGGATGGGGACCTACTGGA+TGG | 0.396986 | 7.4:+17997569 | MS.gene39091:CDS |
| TGGATGGGGACCTACTGGAT+GGG | 0.411862 | 7.4:+17997570 | MS.gene39091:CDS |
| TGAACAGAATTATGCTGCTC+AGG | 0.411888 | 7.4:+17997627 | MS.gene39091:CDS |
| AACAAGTATCAAGGAAGAAA+TGG | 0.421942 | 7.4:+17997805 | MS.gene39091:CDS |
| TCATCCCAATTTACCACATT+GGG | 0.428459 | 7.4:-17997295 | None:intergenic |
| AAAATAATGAAACAAACTCT+TGG | 0.438543 | 7.4:+17997671 | MS.gene39091:CDS |
| TCCTTTGAAGGTTCAACAGC+AGG | 0.438575 | 7.4:-17997709 | None:intergenic |
| TCAACAGCAGGAGCACGATA+TGG | 0.438686 | 7.4:-17997697 | None:intergenic |
| TGGAATCAGACGGAGCAATA+TGG | 0.440258 | 7.4:+17997769 | MS.gene39091:CDS |
| GGTTTCCAACAGTGCCTTTG+TGG | 0.441064 | 7.4:+17997194 | MS.gene39091:CDS |
| ATCATCATCAAGTGGGTCAC+TGG | 0.445627 | 7.4:+17995783 | MS.gene39091:CDS |
| TAAATGAAGATCAAGTGCTT+TGG | 0.446511 | 7.4:+17998051 | MS.gene39091:CDS |
| TCCCCATCCAGGACCGGAAA+AGG | 0.450165 | 7.4:-17997557 | None:intergenic |
| ATGGGGACCTACTGGATGGG+GGG | 0.451326 | 7.4:+17997573 | MS.gene39091:CDS |
| CCATGGCGAAAGGTAATAGA+AGG | 0.451419 | 7.4:+17997250 | MS.gene39091:CDS |
| GGTCCTGGATGGGGACCTAC+TGG | 0.453239 | 7.4:+17997565 | MS.gene39091:CDS |
| CTCACATTGATGATGTAGAT+TGG | 0.455451 | 7.4:+17997413 | MS.gene39091:CDS |
| TCAATGTGAGTGTCGGGATC+AGG | 0.460586 | 7.4:-17997400 | None:intergenic |
| GATGATGATTACTGATCCCT+TGG | 0.467657 | 7.4:-17995769 | None:intergenic |
| TATAAAGGAAAGCCACCTTT+GGG | 0.476143 | 7.4:+17995821 | MS.gene39091:CDS |
| AAATAATGAAACAAACTCTT+GGG | 0.477297 | 7.4:+17997672 | MS.gene39091:CDS |
| ACATCATCAATGTGAGTGTC+GGG | 0.481617 | 7.4:-17997406 | None:intergenic |
| GACTCCTATGAAGCTGCTAA+AGG | 0.497038 | 7.4:+17998086 | MS.gene39091:CDS |
| AGAATTATGCTGCTCAGGGA+TGG | 0.497386 | 7.4:+17997632 | MS.gene39091:CDS |
| GCATCCCAATGTGGTAAATT+GGG | 0.497460 | 7.4:+17997291 | MS.gene39091:CDS |
| ACTCCTATGAAGCTGCTAAA+GGG | 0.501415 | 7.4:+17998087 | MS.gene39091:CDS |
| GTTTCCAACAGTGCCTTTGT+GGG | 0.503784 | 7.4:+17997195 | MS.gene39091:CDS |
| ATCAGGCAATGGTATGTCGC+AGG | 0.507842 | 7.4:-17997383 | None:intergenic |
| CATCCAGTAGGTCCCCATCC+AGG | 0.508679 | 7.4:-17997568 | None:intergenic |
| TACATCATCAATGTGAGTGT+CGG | 0.513899 | 7.4:-17997407 | None:intergenic |
| AATCGATTGGCTCAGTTCCA+TGG | 0.520978 | 7.4:+17997233 | MS.gene39091:CDS |
| AGCAGAGGCCCGCCGCAACA+TGG | 0.520992 | 7.4:+17997480 | MS.gene39091:CDS |
| GTCATCCCAATTTACCACAT+TGG | 0.528139 | 7.4:-17997296 | None:intergenic |
| CCCCGAACTTTATCTGGATG+TGG | 0.535767 | 7.4:+17997450 | MS.gene39091:CDS |
| GTGGAAAAGGTAGCTACTCC+TGG | 0.538528 | 7.4:+17998021 | MS.gene39091:intron |
| CCTTCTATTACCTTTCGCCA+TGG | 0.539041 | 7.4:-17997250 | None:intergenic |
| ATCTTCATTTACCAAGCACC+AGG | 0.539123 | 7.4:-17998039 | None:intergenic |
| TCCTGCTGTTGAACCTTCAA+AGG | 0.539456 | 7.4:+17997708 | MS.gene39091:CDS |
| GAATTATGCTGCTCAGGGAT+GGG | 0.543052 | 7.4:+17997633 | MS.gene39091:CDS |
| GCCAGAATGATTATCATGGA+TGG | 0.543243 | 7.4:+17997749 | MS.gene39091:CDS |
| GACTTGCATAACAAGTATCA+AGG | 0.550052 | 7.4:+17997796 | MS.gene39091:CDS |
| AACCTTCAAAGGAATATGGT+TGG | 0.557337 | 7.4:+17997719 | MS.gene39091:CDS |
| AGTGCTTTGGACTGCATGCA+AGG | 0.558385 | 7.4:+17998064 | MS.gene39091:CDS |
| AATGGCCAGAATGATTATCA+TGG | 0.560785 | 7.4:+17997745 | MS.gene39091:CDS |
| AGTAGGTCCCCATCCAGGAC+CGG | 0.560984 | 7.4:-17997563 | None:intergenic |
| AGGTAGCTACTCCTGGTGCT+TGG | 0.588378 | 7.4:+17998028 | MS.gene39091:intron |
| GAACAGAATTATGCTGCTCA+GGG | 0.595487 | 7.4:+17997628 | MS.gene39091:CDS |
| GATCAGTAATCATCATCAAG+TGG | 0.601542 | 7.4:+17995775 | MS.gene39091:CDS |
| TGAGTGTCGGGATCAGGCAA+TGG | 0.603390 | 7.4:-17997394 | None:intergenic |
| CTTTCCTTTATAGGACGATG+AGG | 0.606347 | 7.4:-17995810 | None:intergenic |
| ATCAGTAATCATCATCAAGT+GGG | 0.617268 | 7.4:+17995776 | MS.gene39091:CDS |
| GGATGTGGAAAGAGAAGCAG+AGG | 0.624882 | 7.4:+17997465 | MS.gene39091:CDS |
| TCAGGCAATGGTATGTCGCA+GGG | 0.628570 | 7.4:-17997382 | None:intergenic |
| TGGCTCAGTTCCATGGCGAA+AGG | 0.630820 | 7.4:+17997240 | MS.gene39091:CDS |
| GGATGACTCTGCTGTCAAAG+AGG | 0.633767 | 7.4:+17997312 | MS.gene39091:CDS |
| AAGAGAACTACCAAGAATCA+CGG | 0.642265 | 7.4:-17997521 | None:intergenic |
| AAGTATCAAGGAAGAAATGG+CGG | 0.663489 | 7.4:+17997808 | MS.gene39091:CDS |
| CCACATCCAGATAAAGTTCG+GGG | 0.678042 | 7.4:-17997450 | None:intergenic |
| GAATGGTACTAACCCAAAGG+TGG | 0.681196 | 7.4:-17995833 | None:intergenic |
| TTATCATGGATGGAATCAGA+CGG | 0.682338 | 7.4:+17997759 | MS.gene39091:CDS |
| TATGTATCTGCATCCCAATG+TGG | 0.712444 | 7.4:+17997282 | MS.gene39091:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACACTTATTTATTGAA+TGG | - | chr7.4:17997053-17997072 | None:intergenic | 15.0% |
| !! | ATTTAATTATAGAAATGTAC+AGG | + | chr7.4:17996477-17996496 | MS.gene39091:intron | 15.0% |
| !! | TAACAAATAAAACTAAAGAA+AGG | - | chr7.4:17995884-17995903 | None:intergenic | 15.0% |
| !! | TTTAATTATAGAAATGTACA+GGG | + | chr7.4:17996478-17996497 | MS.gene39091:intron | 15.0% |
| !!! | TATCTACTAATTAAATCTTT+TGG | + | chr7.4:17996930-17996949 | MS.gene39091:intron | 15.0% |
| !! | AAAATAATGAAACAAACTCT+TGG | + | chr7.4:17997671-17997690 | MS.gene39091:CDS | 20.0% |
| !! | AAATAATGAAACAAACTCTT+GGG | + | chr7.4:17997672-17997691 | MS.gene39091:CDS | 20.0% |
| !! | AAATTTAACCAAACTTGAAA+TGG | - | chr7.4:17996741-17996760 | None:intergenic | 20.0% |
| !! | AAGGAATAAATAGAATCAAT+TGG | - | chr7.4:17997157-17997176 | None:intergenic | 20.0% |
| !! | AATTGAACATATTCAAAAGT+AGG | - | chr7.4:17996042-17996061 | None:intergenic | 20.0% |
| !! | ATTGAACATATTCAAAAGTA+GGG | - | chr7.4:17996041-17996060 | None:intergenic | 20.0% |
| !! | CAAGATATTCAATAATTGAA+GGG | + | chr7.4:17996342-17996361 | MS.gene39091:intron | 20.0% |
| !! | TGAAATGTTGTAAAATATGA+TGG | + | chr7.4:17996282-17996301 | MS.gene39091:intron | 20.0% |
| !! | TTCTATAATTAAATGACGTA+GGG | - | chr7.4:17996471-17996490 | None:intergenic | 20.0% |
| !! | TTTCTATAATTAAATGACGT+AGG | - | chr7.4:17996472-17996491 | None:intergenic | 20.0% |
| !!! | AAATTTTTCTTATGTGGAAA+AGG | + | chr7.4:17998008-17998027 | MS.gene39091:intron | 20.0% |
| !!! | ACTTTTGAATATGTTCAATT+GGG | + | chr7.4:17996042-17996061 | MS.gene39091:intron | 20.0% |
| !!! | AGAATCAATTGGTAATTTAA+GGG | - | chr7.4:17997146-17997165 | None:intergenic | 20.0% |
| !!! | GATCAGTGATTTAAAATAAT+TGG | + | chr7.4:17995943-17995962 | MS.gene39091:intron | 20.0% |
| !!! | TACTTTTGAATATGTTCAAT+TGG | + | chr7.4:17996041-17996060 | MS.gene39091:intron | 20.0% |
| !!! | TAGAATCAATTGGTAATTTA+AGG | - | chr7.4:17997147-17997166 | None:intergenic | 20.0% |
| !!! | TTGATTCTATTTATTCCTTT+TGG | + | chr7.4:17997158-17997177 | MS.gene39091:intron | 20.0% |
| !!! | TTGTTTCATTATTTTCATGT+TGG | - | chr7.4:17997666-17997685 | None:intergenic | 20.0% |
| ! | AATGAATATCAGATGAATAG+AGG | + | chr7.4:17997922-17997941 | MS.gene39091:intron | 25.0% |
| ! | AATGTTGTAAAATATGATGG+AGG | + | chr7.4:17996285-17996304 | MS.gene39091:intron | 25.0% |
| ! | ACAAAAGATAGACTAAAGAA+AGG | - | chr7.4:17996710-17996729 | None:intergenic | 25.0% |
| ! | ACAGGAAATTTAAGTATCTT+TGG | - | chr7.4:17996868-17996887 | None:intergenic | 25.0% |
| ! | AGGTCATTCAATTATTGAAT+AGG | + | chr7.4:17996981-17997000 | MS.gene39091:intron | 25.0% |
| ! | ATAATTGGAGAAAAAACCAA+GGG | + | chr7.4:17995753-17995772 | MS.gene39091:CDS | 25.0% |
| ! | CCAAGATATTCAATAATTGA+AGG | + | chr7.4:17996341-17996360 | MS.gene39091:intron | 25.0% |
| ! | CCTTCAATTATTGAATATCT+TGG | - | chr7.4:17996344-17996363 | None:intergenic | 25.0% |
| !! | AAGAGTGTAGTTAAATAAAC+AGG | - | chr7.4:17996886-17996905 | None:intergenic | 25.0% |
| !! | ATGAATTGTTGTCATTTCTT+TGG | + | chr7.4:17996380-17996399 | MS.gene39091:intron | 25.0% |
| !! | ATGTTGTAAAATATGATGGA+GGG | + | chr7.4:17996286-17996305 | MS.gene39091:intron | 25.0% |
| !! | ATTTTTCTTAGGATGAGTTT+TGG | + | chr7.4:17996156-17996175 | MS.gene39091:intron | 25.0% |
| !! | CTACTAATTAAATCTTTTGG+AGG | + | chr7.4:17996933-17996952 | MS.gene39091:intron | 25.0% |
| !! | CTTTTGAATATGTTCAATTG+GGG | + | chr7.4:17996043-17996062 | MS.gene39091:intron | 25.0% |
| !!! | AAATGAAACCATTTCAAGTT+TGG | + | chr7.4:17996730-17996749 | MS.gene39091:intron | 25.0% |
| !!! | GGTTAAATTTGTTCTGAAAA+TGG | + | chr7.4:17996751-17996770 | MS.gene39091:intron | 25.0% |
| !!! | TGGTTTTGAATGAACAATTT+TGG | + | chr7.4:17996085-17996104 | MS.gene39091:intron | 25.0% |
| !!! | TTACTTTTCAAAGTATCGTT+AGG | + | chr7.4:17996961-17996980 | MS.gene39091:intron | 25.0% |
| AACAAGTATCAAGGAAGAAA+TGG | + | chr7.4:17997805-17997824 | MS.gene39091:CDS | 30.0% | |
| AATAGAGGAAGAAGAAGAAA+CGG | + | chr7.4:17997937-17997956 | MS.gene39091:intron | 30.0% | |
| AGGTTGTAATTTCTTCTTGT+TGG | + | chr7.4:17996416-17996435 | MS.gene39091:intron | 30.0% | |
| ATCAGTAATCATCATCAAGT+GGG | + | chr7.4:17995776-17995795 | MS.gene39091:CDS | 30.0% | |
| CATTTGACAATGCAAAAAAC+AGG | + | chr7.4:17997335-17997354 | MS.gene39091:CDS | 30.0% | |
| GATAATTGGAGAAAAAACCA+AGG | + | chr7.4:17995752-17995771 | MS.gene39091:CDS | 30.0% | |
| GTCAATTTAATGATGAGGTA+GGG | - | chr7.4:17996665-17996684 | None:intergenic | 30.0% | |
| TAAATGAAGATCAAGTGCTT+TGG | + | chr7.4:17998051-17998070 | MS.gene39091:CDS | 30.0% | |
| TCAATGATGACACACATTAT+CGG | - | chr7.4:17996829-17996848 | None:intergenic | 30.0% | |
| TTCGTGTATTGAAAATGTCT+AGG | + | chr7.4:17996907-17996926 | MS.gene39091:intron | 30.0% | |
| ! | AACTATGTTTCTGTTTGTGT+TGG | + | chr7.4:17996510-17996529 | MS.gene39091:intron | 30.0% |
| ! | ACAATGCAAAAAACAGGTTT+TGG | + | chr7.4:17997341-17997360 | MS.gene39091:CDS | 30.0% |
| ! | CAATGCAAAAAACAGGTTTT+GGG | + | chr7.4:17997342-17997361 | MS.gene39091:CDS | 30.0% |
| ! | TAAAATATGATGGAGGGTTT+AGG | + | chr7.4:17996292-17996311 | MS.gene39091:intron | 30.0% |
| !! | AAGAAGTTTTGTGAATCGAT+TGG | + | chr7.4:17997220-17997239 | MS.gene39091:CDS | 30.0% |
| !! | ATGTTCAAGTTGGTATCTAT+TGG | + | chr7.4:17996788-17996807 | MS.gene39091:intron | 30.0% |
| !! | TCTGAAAATGGTCTTGATTT+TGG | + | chr7.4:17996763-17996782 | MS.gene39091:intron | 30.0% |
| AAATCCTCATCGTCCTATAA+AGG | + | chr7.4:17995806-17995825 | MS.gene39091:CDS | 35.0% | |
| AACCTATAATCACACCTAGA+AGG | - | chr7.4:17997121-17997140 | None:intergenic | 35.0% | |
| AACCTTCAAAGGAATATGGT+TGG | + | chr7.4:17997719-17997738 | MS.gene39091:CDS | 35.0% | |
| AAGAGAACTACCAAGAATCA+CGG | - | chr7.4:17997524-17997543 | None:intergenic | 35.0% | |
| AAGTATCAAGGAAGAAATGG+CGG | + | chr7.4:17997808-17997827 | MS.gene39091:CDS | 35.0% | |
| AATATGTTCAATTGGGGTGT+TGG | + | chr7.4:17996049-17996068 | MS.gene39091:intron | 35.0% | |
| AATGATGACACACATTATCG+GGG | - | chr7.4:17996827-17996846 | None:intergenic | 35.0% | |
| AATGGCCAGAATGATTATCA+TGG | + | chr7.4:17997745-17997764 | MS.gene39091:CDS | 35.0% | |
| AATTGAAGGGAGTTTCACTA+AGG | + | chr7.4:17996355-17996374 | MS.gene39091:intron | 35.0% | |
| AGAGAGAAAACAATATGTCG+TGG | + | chr7.4:17997869-17997888 | MS.gene39091:intron | 35.0% | |
| AGCTCGTCAATTTAATGATG+AGG | - | chr7.4:17996670-17996689 | None:intergenic | 35.0% | |
| ATTCAACTGCAACTCAATTG+TGG | - | chr7.4:17995991-17996010 | None:intergenic | 35.0% | |
| CAATGATGACACACATTATC+GGG | - | chr7.4:17996828-17996847 | None:intergenic | 35.0% | |
| CAATGTGTCACATCAAGATT+CGG | - | chr7.4:17996634-17996653 | None:intergenic | 35.0% | |
| CATTAAATTGACGAGCTTAC+AGG | + | chr7.4:17996673-17996692 | MS.gene39091:intron | 35.0% | |
| CGTCAATTTAATGATGAGGT+AGG | - | chr7.4:17996666-17996685 | None:intergenic | 35.0% | |
| GACTTGCATAACAAGTATCA+AGG | + | chr7.4:17997796-17997815 | MS.gene39091:CDS | 35.0% | |
| GATCAGTAATCATCATCAAG+TGG | + | chr7.4:17995775-17995794 | MS.gene39091:CDS | 35.0% | |
| GTTGAACCTTCAAAGGAATA+TGG | + | chr7.4:17997715-17997734 | MS.gene39091:CDS | 35.0% | |
| TACATCATCAATGTGAGTGT+CGG | - | chr7.4:17997410-17997429 | None:intergenic | 35.0% | |
| TATAAAGGAAAGCCACCTTT+GGG | + | chr7.4:17995821-17995840 | MS.gene39091:CDS | 35.0% | |
| TCATCCCAATTTACCACATT+GGG | - | chr7.4:17997298-17997317 | None:intergenic | 35.0% | |
| TCCATCCATGATAATCATTC+TGG | - | chr7.4:17997753-17997772 | None:intergenic | 35.0% | |
| TTATCATGGATGGAATCAGA+CGG | + | chr7.4:17997759-17997778 | MS.gene39091:CDS | 35.0% | |
| TTCCACATCCAGATAAAGTT+CGG | - | chr7.4:17997455-17997474 | None:intergenic | 35.0% | |
| TTCCTTCTAGGTGTGATTAT+AGG | + | chr7.4:17997116-17997135 | MS.gene39091:intron | 35.0% | |
| ! | ATTGTTGTCATTTCTTTGGC+TGG | + | chr7.4:17996384-17996403 | MS.gene39091:intron | 35.0% |
| ! | CAAAACTTCTTTTCCCACAA+AGG | - | chr7.4:17997211-17997230 | None:intergenic | 35.0% |
| ! | CCAGACAGATTTAGTTCAAA+AGG | - | chr7.4:17997024-17997043 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTAAATCTGTC+TGG | + | chr7.4:17997021-17997040 | MS.gene39091:intron | 35.0% |
| ! | CTTTTGCATGTTTTCCTTCT+AGG | + | chr7.4:17997104-17997123 | MS.gene39091:intron | 35.0% |
| ! | GAGGGGAAATTTTTCTTATG+TGG | + | chr7.4:17998002-17998021 | MS.gene39091:intron | 35.0% |
| !! | AAATGGCGGTAATGGAAATT+GGG | + | chr7.4:17997822-17997841 | MS.gene39091:intron | 35.0% |
| !! | CTCACATTGATGATGTAGAT+TGG | + | chr7.4:17997413-17997432 | MS.gene39091:CDS | 35.0% |
| !! | GATTTTGGCAATGTTCAAGT+TGG | + | chr7.4:17996778-17996797 | MS.gene39091:intron | 35.0% |
| !! | GTGTTGGTTTAAAAATTGGC+TGG | + | chr7.4:17996065-17996084 | MS.gene39091:intron | 35.0% |
| !! | TGGGGTGTTGGTTTAAAAAT+TGG | + | chr7.4:17996061-17996080 | MS.gene39091:intron | 35.0% |
| !!! | CAATTTTGGTTTTGTGCTAG+TGG | + | chr7.4:17996099-17996118 | MS.gene39091:intron | 35.0% |
| !!! | CTTGGTCATTTTTGTTGACA+AGG | - | chr7.4:17996326-17996345 | None:intergenic | 35.0% |
| !!! | TAGGATGAGTTTTGGTTTGA+TGG | + | chr7.4:17996164-17996183 | MS.gene39091:intron | 35.0% |
| AAGGAATATGGTTGGCGAAA+TGG | + | chr7.4:17997727-17997746 | MS.gene39091:CDS | 40.0% | |
| ACATCATCAATGTGAGTGTC+GGG | - | chr7.4:17997409-17997428 | None:intergenic | 40.0% | |
| ACTCCTATGAAGCTGCTAAA+GGG | + | chr7.4:17998087-17998106 | MS.gene39091:CDS | 40.0% | |
| AGAGAATGGTACTAACCCAA+AGG | - | chr7.4:17995839-17995858 | None:intergenic | 40.0% | |
| ATCTTCATTTACCAAGCACC+AGG | - | chr7.4:17998042-17998061 | None:intergenic | 40.0% | |
| ATGATGACACACATTATCGG+GGG | - | chr7.4:17996826-17996845 | None:intergenic | 40.0% | |
| CAAAGGTGGCTTTCCTTTAT+AGG | - | chr7.4:17995822-17995841 | None:intergenic | 40.0% | |
| CCTATTATCTGCGAACCAAA+AGG | - | chr7.4:17997176-17997195 | None:intergenic | 40.0% | |
| CTATAAAGGAAAGCCACCTT+TGG | + | chr7.4:17995820-17995839 | MS.gene39091:CDS | 40.0% | |
| CTTTCCTTTATAGGACGATG+AGG | - | chr7.4:17995813-17995832 | None:intergenic | 40.0% | |
| GAACAGAATTATGCTGCTCA+GGG | + | chr7.4:17997628-17997647 | MS.gene39091:CDS | 40.0% | |
| GATGATGATTACTGATCCCT+TGG | - | chr7.4:17995772-17995791 | None:intergenic | 40.0% | |
| GCATCCCAATGTGGTAAATT+GGG | + | chr7.4:17997291-17997310 | MS.gene39091:CDS | 40.0% | |
| GCCAGAATGATTATCATGGA+TGG | + | chr7.4:17997749-17997768 | MS.gene39091:CDS | 40.0% | |
| GTCATCCCAATTTACCACAT+TGG | - | chr7.4:17997299-17997318 | None:intergenic | 40.0% | |
| TAAGCCTCTTCTCACAAAAG+AGG | - | chr7.4:17996209-17996228 | None:intergenic | 40.0% | |
| TATGTATCTGCATCCCAATG+TGG | + | chr7.4:17997282-17997301 | MS.gene39091:CDS | 40.0% | |
| TCCACATCCAGATAAAGTTC+GGG | - | chr7.4:17997454-17997473 | None:intergenic | 40.0% | |
| TGAACAGAATTATGCTGCTC+AGG | + | chr7.4:17997627-17997646 | MS.gene39091:CDS | 40.0% | |
| TGCATCCCAATGTGGTAAAT+TGG | + | chr7.4:17997290-17997309 | MS.gene39091:CDS | 40.0% | |
| ! | ATTAGTGCCATGATGATGTC+CGG | - | chr7.4:17997905-17997924 | None:intergenic | 40.0% |
| ! | CTCTTGAATCAGTCCTTTTC+CGG | + | chr7.4:17997544-17997563 | MS.gene39091:CDS | 40.0% |
| ! | CTTTGATTTCATGTCGTCTG+TGG | + | chr7.4:17996578-17996597 | MS.gene39091:intron | 40.0% |
| ! | GTTTTGCATGATCATCAGGT+TGG | + | chr7.4:17996440-17996459 | MS.gene39091:intron | 40.0% |
| ! | TAATGGAAATTGGGGAGCAT+GGG | + | chr7.4:17997831-17997850 | MS.gene39091:intron | 40.0% |
| ! | TGGTGTTTTGCATGATCATC+AGG | + | chr7.4:17996436-17996455 | MS.gene39091:intron | 40.0% |
| ! | TTGTCATTTCTTTGGCTGGT+GGG | + | chr7.4:17996388-17996407 | MS.gene39091:intron | 40.0% |
| !! | AATGGCGGTAATGGAAATTG+GGG | + | chr7.4:17997823-17997842 | MS.gene39091:intron | 40.0% |
| !! | GAAATGGCGGTAATGGAAAT+TGG | + | chr7.4:17997821-17997840 | MS.gene39091:intron | 40.0% |
| !!! | CCTTTTGGTTCGCAGATAAT+AGG | + | chr7.4:17997173-17997192 | MS.gene39091:intron | 40.0% |
| !!! | TTTGGTTTTGTGCTAGTGGT+AGG | + | chr7.4:17996103-17996122 | MS.gene39091:intron | 40.0% |
| AATAACCCCGGACATCATCA+TGG | + | chr7.4:17997895-17997914 | MS.gene39091:intron | 45.0% | |
| AGAAGAAGAAACGGAGGAAG+AGG | + | chr7.4:17997946-17997965 | MS.gene39091:intron | 45.0% | |
| AGAATTATGCTGCTCAGGGA+TGG | + | chr7.4:17997632-17997651 | MS.gene39091:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGAGAA+TGG | - | chr7.4:17995853-17995872 | None:intergenic | 45.0% | |
| AGAGGAAGAAGAAGAAACGG+AGG | + | chr7.4:17997940-17997959 | MS.gene39091:intron | 45.0% | |
| ATCATCATCAAGTGGGTCAC+TGG | + | chr7.4:17995783-17995802 | MS.gene39091:CDS | 45.0% | |
| ATGTCGTGGTCTAATAACCC+CGG | + | chr7.4:17997883-17997902 | MS.gene39091:intron | 45.0% | |
| CAACATGGAAGAAAAAGGCG+AGG | + | chr7.4:17997495-17997514 | MS.gene39091:CDS | 45.0% | |
| CAAGGAAGAAATGGCGGTAA+TGG | + | chr7.4:17997814-17997833 | MS.gene39091:intron | 45.0% | |
| CCACATCCAGATAAAGTTCG+GGG | - | chr7.4:17997453-17997472 | None:intergenic | 45.0% | |
| CCATGGCGAAAGGTAATAGA+AGG | + | chr7.4:17997250-17997269 | MS.gene39091:CDS | 45.0% | |
| CCTTCTATTACCTTTCGCCA+TGG | - | chr7.4:17997253-17997272 | None:intergenic | 45.0% | |
| CGCCAACCATATTCCTTTGA+AGG | - | chr7.4:17997724-17997743 | None:intergenic | 45.0% | |
| GAATGGTACTAACCCAAAGG+TGG | - | chr7.4:17995836-17995855 | None:intergenic | 45.0% | |
| GAATTATGCTGCTCAGGGAT+GGG | + | chr7.4:17997633-17997652 | MS.gene39091:CDS | 45.0% | |
| GACTCCTATGAAGCTGCTAA+AGG | + | chr7.4:17998086-17998105 | MS.gene39091:CDS | 45.0% | |
| GTTTCCAACAGTGCCTTTGT+GGG | + | chr7.4:17997195-17997214 | MS.gene39091:CDS | 45.0% | |
| TCCTGCTGTTGAACCTTCAA+AGG | + | chr7.4:17997708-17997727 | MS.gene39091:CDS | 45.0% | |
| TGACCCTTTAGCAGCTTCAT+AGG | - | chr7.4:17998093-17998112 | None:intergenic | 45.0% | |
| TGGAATCAGACGGAGCAATA+TGG | + | chr7.4:17997769-17997788 | MS.gene39091:CDS | 45.0% | |
| TGTGTGTGACTCATGTGACA+GGG | + | chr7.4:17996256-17996275 | MS.gene39091:intron | 45.0% | |
| ! | AATCGATTGGCTCAGTTCCA+TGG | + | chr7.4:17997233-17997252 | MS.gene39091:CDS | 45.0% |
| ! | CATGCCTCTTTTGTGAGAAG+AGG | + | chr7.4:17996202-17996221 | MS.gene39091:intron | 45.0% |
| ! | CGCCTTTTTCTTCCATGTTG+CGG | - | chr7.4:17997495-17997514 | None:intergenic | 45.0% |
| ! | CTTTTTCTTCCATGTTGCGG+CGG | - | chr7.4:17997492-17997511 | None:intergenic | 45.0% |
| ! | GTAATGGAAATTGGGGAGCA+TGG | + | chr7.4:17997830-17997849 | MS.gene39091:intron | 45.0% |
| ! | GTTGTCATTTCTTTGGCTGG+TGG | + | chr7.4:17996387-17996406 | MS.gene39091:intron | 45.0% |
| ! | TCCTTTGAAGGTTCAACAGC+AGG | - | chr7.4:17997712-17997731 | None:intergenic | 45.0% |
| ! | TTAGTGCCATGATGATGTCC+GGG | - | chr7.4:17997904-17997923 | None:intergenic | 45.0% |
| ! | TTTTTCTTCCATGTTGCGGC+GGG | - | chr7.4:17997491-17997510 | None:intergenic | 45.0% |
| !! | TGCATGATCATCAGGTTGGT+TGG | + | chr7.4:17996444-17996463 | MS.gene39091:intron | 45.0% |
| !!! | AGGTTTTGGGCTGAGATCAA+CGG | + | chr7.4:17997355-17997374 | MS.gene39091:CDS | 45.0% |
| !!! | TTTTCCCACAAAGGCACTGT+TGG | - | chr7.4:17997202-17997221 | None:intergenic | 45.0% |
| !!! | ATTTTAATTTAATTTTTCTT+AGG | + | chr7.4:17996145-17996164 | MS.gene39091:intron | 5.0% |
| AGAAGAAACGGAGGAAGAGG+AGG | + | chr7.4:17997949-17997968 | MS.gene39091:intron | 50.0% | |
| ATCAGGCAATGGTATGTCGC+AGG | - | chr7.4:17997386-17997405 | None:intergenic | 50.0% | |
| CCCCGAACTTTATCTGGATG+TGG | + | chr7.4:17997450-17997469 | MS.gene39091:CDS | 50.0% | |
| CGCCGCAACATGGAAGAAAA+AGG | + | chr7.4:17997490-17997509 | MS.gene39091:CDS | 50.0% | |
| GGATGACTCTGCTGTCAAAG+AGG | + | chr7.4:17997312-17997331 | MS.gene39091:CDS | 50.0% | |
| GGATGTGGAAAGAGAAGCAG+AGG | + | chr7.4:17997465-17997484 | MS.gene39091:CDS | 50.0% | |
| GGTTTCCAACAGTGCCTTTG+TGG | + | chr7.4:17997194-17997213 | MS.gene39091:CDS | 50.0% | |
| GTGGAAAAGGTAGCTACTCC+TGG | + | chr7.4:17998021-17998040 | MS.gene39091:intron | 50.0% | |
| GTGTGTGTGACTCATGTGAC+AGG | + | chr7.4:17996255-17996274 | MS.gene39091:intron | 50.0% | |
| TCAGGCAATGGTATGTCGCA+GGG | - | chr7.4:17997385-17997404 | None:intergenic | 50.0% | |
| TGTCGACCCCGAACTTTATC+TGG | + | chr7.4:17997444-17997463 | MS.gene39091:CDS | 50.0% | |
| ! | AATCAGTCCTTTTCCGGTCC+TGG | + | chr7.4:17997550-17997569 | MS.gene39091:CDS | 50.0% |
| ! | AGTGCTTTGGACTGCATGCA+AGG | + | chr7.4:17998064-17998083 | MS.gene39091:CDS | 50.0% |
| ! | TAGTGCCATGATGATGTCCG+GGG | - | chr7.4:17997903-17997922 | None:intergenic | 50.0% |
| ! | TCAACAGCAGGAGCACGATA+TGG | - | chr7.4:17997700-17997719 | None:intergenic | 50.0% |
| !! | TCAATGTGAGTGTCGGGATC+AGG | - | chr7.4:17997403-17997422 | None:intergenic | 50.0% |
| !! | TCTTTGGCTGGTGGGTTGTT+AGG | + | chr7.4:17996396-17996415 | MS.gene39091:intron | 50.0% |
| AGAAACGGAGGAAGAGGAGG+AGG | + | chr7.4:17997952-17997971 | MS.gene39091:intron | 55.0% | |
| AGGTAGCTACTCCTGGTGCT+TGG | + | chr7.4:17998028-17998047 | MS.gene39091:intron | 55.0% | |
| TGGATGGGGACCTACTGGAT+GGG | + | chr7.4:17997570-17997589 | MS.gene39091:CDS | 55.0% | |
| TGGCTCAGTTCCATGGCGAA+AGG | + | chr7.4:17997240-17997259 | MS.gene39091:CDS | 55.0% | |
| ! | AGTCCTTTTCCGGTCCTGGA+TGG | + | chr7.4:17997554-17997573 | MS.gene39091:CDS | 55.0% |
| ! | GGAAATTGGGGAGCATGGGA+TGG | + | chr7.4:17997835-17997854 | MS.gene39091:intron | 55.0% |
| ! | GTCCTTTTCCGGTCCTGGAT+GGG | + | chr7.4:17997555-17997574 | MS.gene39091:CDS | 55.0% |
| ! | TCCTTTTCCGGTCCTGGATG+GGG | + | chr7.4:17997556-17997575 | MS.gene39091:CDS | 55.0% |
| !! | TGAGTGTCGGGATCAGGCAA+TGG | - | chr7.4:17997397-17997416 | None:intergenic | 55.0% |
| AACGGAGGAAGAGGAGGAGG+AGG | + | chr7.4:17997955-17997974 | MS.gene39091:intron | 60.0% | |
| AGAGGAGGAGGAGGAGGAAG+AGG | + | chr7.4:17997964-17997983 | MS.gene39091:intron | 60.0% | |
| AGGTGGAGGAGGAGGAAGGA+GGG | + | chr7.4:17997984-17998003 | MS.gene39091:intron | 60.0% | |
| AGTAGGTCCCCATCCAGGAC+CGG | - | chr7.4:17997566-17997585 | None:intergenic | 60.0% | |
| ATGGGGACCTACTGGATGGG+GGG | + | chr7.4:17997573-17997592 | MS.gene39091:CDS | 60.0% | |
| CATCCAGTAGGTCCCCATCC+AGG | - | chr7.4:17997571-17997590 | None:intergenic | 60.0% | |
| CTGGATGGGGACCTACTGGA+TGG | + | chr7.4:17997569-17997588 | MS.gene39091:CDS | 60.0% | |
| GAAGAGGTGGAGGAGGAGGA+AGG | + | chr7.4:17997980-17997999 | MS.gene39091:intron | 60.0% | |
| GATGGGGACCTACTGGATGG+GGG | + | chr7.4:17997572-17997591 | MS.gene39091:CDS | 60.0% | |
| GGATGGGGACCTACTGGATG+GGG | + | chr7.4:17997571-17997590 | MS.gene39091:CDS | 60.0% | |
| TCCCCATCCAGGACCGGAAA+AGG | - | chr7.4:17997560-17997579 | None:intergenic | 60.0% | |
| TCTTCGTCCCCCCATCCAGT+AGG | - | chr7.4:17997583-17997602 | None:intergenic | 60.0% | |
| GAGGTGGAGGAGGAGGAAGG+AGG | + | chr7.4:17997983-17998002 | MS.gene39091:intron | 65.0% | |
| GGAGGAAGAGGAGGAGGAGG+AGG | + | chr7.4:17997958-17997977 | MS.gene39091:intron | 65.0% | |
| GGAGGAAGAGGTGGAGGAGG+AGG | + | chr7.4:17997976-17997995 | MS.gene39091:intron | 65.0% | |
| GGAGGAGGAAGAGGTGGAGG+AGG | + | chr7.4:17997973-17997992 | MS.gene39091:intron | 65.0% | |
| GGAGGAGGAGGAAGAGGTGG+AGG | + | chr7.4:17997970-17997989 | MS.gene39091:intron | 65.0% | |
| GGAGGAGGAGGAGGAAGAGG+TGG | + | chr7.4:17997967-17997986 | MS.gene39091:intron | 65.0% | |
| GGCGAGGCAGCCGTGATTCT+TGG | + | chr7.4:17997511-17997530 | MS.gene39091:CDS | 65.0% | |
| GGTCCTGGATGGGGACCTAC+TGG | + | chr7.4:17997565-17997584 | MS.gene39091:CDS | 65.0% | |
| GGTGGAGGAGGAGGAAGGAG+GGG | + | chr7.4:17997985-17998004 | MS.gene39091:intron | 65.0% | |
| AGCAGAGGCCCGCCGCAACA+TGG | + | chr7.4:17997480-17997499 | MS.gene39091:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17995749 | 17998121 | 17995749 | ID=MS.gene39091 |
| chr7.4 | mRNA | 17995749 | 17998121 | 17995749 | ID=MS.gene39091.t1;Parent=MS.gene39091 |
| chr7.4 | exon | 17995749 | 17995842 | 17995749 | ID=MS.gene39091.t1.exon1;Parent=MS.gene39091.t1 |
| chr7.4 | CDS | 17995749 | 17995842 | 17995749 | ID=cds.MS.gene39091.t1;Parent=MS.gene39091.t1 |
| chr7.4 | exon | 17997188 | 17997829 | 17997188 | ID=MS.gene39091.t1.exon2;Parent=MS.gene39091.t1 |
| chr7.4 | CDS | 17997188 | 17997829 | 17997188 | ID=cds.MS.gene39091.t1;Parent=MS.gene39091.t1 |
| chr7.4 | exon | 17998030 | 17998121 | 17998030 | ID=MS.gene39091.t1.exon3;Parent=MS.gene39091.t1 |
| chr7.4 | CDS | 17998030 | 17998121 | 17998030 | ID=cds.MS.gene39091.t1;Parent=MS.gene39091.t1 |
| Gene Sequence |
| Protein sequence |
