AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39093.t1 MTR_7g090750 60.748 428 149 9 1 415 1 422 9.51e-157 449
MS.gene39093.t1 MTR_5g038430 50.816 429 184 10 1 416 82 496 2.61e-119 356
MS.gene39093.t1 MTR_0227s0010 52.536 276 101 6 1 269 1 253 1.04e-85 265
MS.gene39093.t1 MTR_0227s0010 43.119 109 59 1 305 410 230 338 5.36e-13 70.1
MS.gene39093.t1 MTR_8g095590 45.427 328 132 13 1 318 1 291 5.13e-64 213
MS.gene39093.t1 MTR_7g090760 57.233 159 46 2 85 242 1 138 7.61e-53 175
MS.gene39093.t1 MTR_8g028505 51.152 217 72 7 137 347 1 189 2.25e-51 173
MS.gene39093.t1 MTR_0049s0110 30.465 430 254 14 14 416 8 419 1.27e-40 149
MS.gene39093.t1 MTR_4g057725 29.493 434 254 14 13 412 21 436 1.95e-34 133
MS.gene39093.t1 MTR_1g021825 30.162 431 250 13 14 415 17 425 1.13e-33 130
MS.gene39093.t1 MTR_2g047858 29.330 433 253 12 14 412 115 528 2.72e-33 131
MS.gene39093.t1 MTR_1g021825 30.162 431 250 13 14 415 88 496 2.97e-33 130
MS.gene39093.t1 MTR_2g047848 28.833 437 251 14 14 412 7 421 3.72e-33 129
MS.gene39093.t1 MTR_2g091145 29.630 405 245 14 4 377 11 406 5.06e-33 129
MS.gene39093.t1 MTR_0049s0110 37.553 237 130 8 14 244 8 232 7.02e-32 122
MS.gene39093.t1 MTR_2g047872 30.000 430 251 11 14 412 23 433 9.06e-32 125
MS.gene39093.t1 MTR_0049s0110 37.553 237 130 8 14 244 8 232 1.39e-31 123
MS.gene39093.t1 MTR_0049s0110 37.553 237 130 8 14 244 8 232 1.45e-31 123
MS.gene39093.t1 MTR_1g013840 29.535 430 256 13 14 412 56 469 8.05e-30 120
MS.gene39093.t1 MTR_1g011410 33.131 329 190 10 14 321 315 634 1.68e-29 121
MS.gene39093.t1 MTR_1g011410 30.887 327 173 10 14 322 7 298 8.73e-27 113
MS.gene39093.t1 MTR_1g013560 27.231 437 266 11 13 415 18 436 1.50e-28 117
MS.gene39093.t1 MTR_1g011430 39.806 206 118 4 14 218 7 207 3.63e-28 114
MS.gene39093.t1 MTR_1g011400 30.805 435 250 16 14 415 7 423 7.50e-28 114
MS.gene39093.t1 MTR_1g016340 28.605 430 265 11 14 412 20 438 9.14e-28 114
MS.gene39093.t1 MTR_1g016340 28.605 430 265 11 14 412 15 433 1.14e-27 114
MS.gene39093.t1 MTR_1g021820 28.806 427 267 12 8 415 22 430 1.33e-27 114
MS.gene39093.t1 MTR_1g013580 29.195 435 255 15 12 414 17 430 1.72e-27 113
MS.gene39093.t1 MTR_1g014450 27.674 430 261 14 14 412 16 426 1.20e-25 108
MS.gene39093.t1 MTR_1g013560 28.529 333 208 8 13 321 18 344 4.25e-25 105
MS.gene39093.t1 MTR_1g013630 31.879 298 165 12 14 298 39 311 8.32e-25 105
MS.gene39093.t1 MTR_1g016310 36.364 209 125 6 14 216 20 226 4.88e-24 102
MS.gene39093.t1 MTR_5g040850 28.438 429 256 13 14 412 7 414 1.68e-23 102
MS.gene39093.t1 MTR_1g016310 36.364 209 125 6 14 216 20 226 1.74e-23 102
MS.gene39093.t1 MTR_1g013610 30.061 326 191 11 12 319 5 311 4.38e-21 94.7
MS.gene39093.t1 MTR_1g028860 31.863 204 126 5 27 221 3 202 3.63e-16 78.6
MS.gene39093.t1 MTR_2g007500 30.102 196 111 6 13 201 13 189 2.28e-14 74.3
MS.gene39093.t1 MTR_4g080590 31.500 200 117 7 11 202 20 207 7.62e-14 72.8
MS.gene39093.t1 MTR_4g080590 31.500 200 117 7 11 202 20 207 9.20e-14 73.2
MS.gene39093.t1 MTR_2g007450 25.436 401 250 20 8 378 10 391 2.43e-13 71.6
MS.gene39093.t1 MTR_3g107160 26.478 423 231 21 11 407 7 375 1.01e-12 69.7
MS.gene39093.t1 MTR_7g075820 25.622 402 218 14 14 377 6 364 1.17e-12 69.3
MS.gene39093.t1 MTR_8g085430 32.020 203 114 7 13 201 10 202 1.74e-12 68.6
MS.gene39093.t1 MTR_3g048290 31.841 201 121 7 11 202 20 213 2.31e-12 68.9
MS.gene39093.t1 MTR_7g056433 29.703 202 133 5 3 200 1 197 3.99e-12 67.8
MS.gene39093.t1 MTR_7g105510 30.045 223 128 7 17 215 35 253 5.32e-12 67.0
MS.gene39093.t1 MTR_7g056447 34.043 188 109 8 14 196 9 186 2.35e-11 64.7
MS.gene39093.t1 MTR_2g047852 30.986 213 106 6 14 218 9 188 3.14e-11 62.8
MS.gene39093.t1 MTR_7g098570 25.263 380 241 11 7 377 13 358 3.61e-11 65.1
MS.gene39093.t1 MTR_2g100590 26.271 236 145 8 11 228 39 263 4.76e-11 64.7
MS.gene39093.t1 MTR_2g100590 26.271 236 145 8 11 228 39 263 5.78e-11 64.7
MS.gene39093.t1 MTR_8g014290 29.252 147 91 5 14 147 10 156 6.47e-11 60.8
MS.gene39093.t1 MTR_2g100590 26.271 236 145 8 11 228 39 263 6.62e-11 64.3
MS.gene39093.t1 MTR_2g100570 29.258 229 125 9 9 215 67 280 6.81e-11 64.3
MS.gene39093.t1 MTR_2g007400 27.273 209 140 5 3 199 1 209 7.31e-11 63.9
MS.gene39093.t1 MTR_2g100570 29.258 229 125 9 9 215 67 280 7.89e-11 64.3
MS.gene39093.t1 MTR_7g088260 29.644 253 158 10 14 260 91 329 8.24e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39093.t1 AT1G13570 29.724 434 250 13 14 416 6 415 2.89e-34 132
MS.gene39093.t1 AT1G13570 29.724 434 250 13 14 416 6 415 2.89e-34 132
MS.gene39093.t1 AT1G13570 35.443 237 134 6 14 244 6 229 5.80e-29 115
MS.gene39093.t1 AT3G50710 25.934 455 251 21 13 412 1 424 1.13e-20 94.0
MS.gene39093.t1 AT1G69630 25.328 458 278 16 6 415 10 451 1.41e-17 84.7
MS.gene39093.t1 AT5G44950 26.696 457 258 20 14 415 4 438 2.46e-16 80.9
MS.gene39093.t1 AT2G04230 26.869 428 240 22 14 389 13 419 2.99e-16 80.9
MS.gene39093.t1 AT3G26922 29.412 255 143 8 14 239 14 260 1.00e-15 77.8
MS.gene39093.t1 AT3G26922 29.412 255 143 8 14 239 14 260 1.00e-15 77.8
MS.gene39093.t1 AT1G78750 29.000 200 136 5 6 200 10 208 1.44e-14 75.9
MS.gene39093.t1 AT1G78750 29.000 200 136 5 6 200 10 208 1.44e-14 75.9
MS.gene39093.t1 AT4G13985 27.363 201 137 6 7 200 12 210 2.07e-14 75.1
MS.gene39093.t1 AT4G14103 32.099 243 144 10 14 243 8 242 3.67e-14 73.9
MS.gene39093.t1 AT4G14103 32.099 243 144 10 14 243 8 242 3.67e-14 73.9
MS.gene39093.t1 AT4G14103 32.099 243 144 10 14 243 8 242 3.69e-14 74.3
MS.gene39093.t1 AT1G51370 32.292 192 116 7 7 197 13 191 3.97e-14 73.6
MS.gene39093.t1 AT1G66290 28.643 199 127 7 4 199 19 205 5.13e-14 73.9
MS.gene39093.t1 AT1G51370 32.292 192 116 7 7 197 13 191 5.19e-14 73.9
MS.gene39093.t1 AT1G51370 32.292 192 116 7 7 197 13 191 5.20e-14 73.9
MS.gene39093.t1 AT3G58860 30.928 194 123 5 11 197 4 193 1.83e-13 72.4
MS.gene39093.t1 AT1G80960 28.641 206 126 8 12 203 9 207 3.81e-13 71.2
MS.gene39093.t1 AT1G66300 30.500 200 124 7 4 199 20 208 4.24e-13 71.2
MS.gene39093.t1 AT1G80960 28.641 206 126 8 12 203 48 246 4.35e-13 70.9
MS.gene39093.t1 AT1G80960 28.641 206 126 8 12 203 48 246 5.79e-13 70.9
MS.gene39093.t1 AT1G80960 28.641 206 126 8 12 203 48 246 5.86e-13 70.9
MS.gene39093.t1 AT1G80960 28.641 206 126 8 12 203 48 246 5.86e-13 70.9
MS.gene39093.t1 AT1G80960 28.641 206 126 8 12 203 48 246 5.86e-13 70.9
MS.gene39093.t1 AT1G78840 28.195 266 152 12 19 268 11 253 7.23e-13 70.5
MS.gene39093.t1 AT1G78840 28.195 266 152 12 19 268 11 253 7.23e-13 70.5
MS.gene39093.t1 AT5G56420 27.778 216 132 7 14 218 6 208 1.03e-12 69.7
MS.gene39093.t1 AT5G56420 27.778 216 132 7 14 218 6 208 1.03e-12 69.7
MS.gene39093.t1 AT5G56420 27.778 216 132 7 14 218 6 208 1.03e-12 69.7
MS.gene39093.t1 AT5G56690 26.977 215 137 9 16 218 4 210 1.72e-12 68.9
MS.gene39093.t1 AT5G56440 28.796 191 121 7 13 197 1 182 1.99e-12 68.9
MS.gene39093.t1 AT1G16930 30.303 198 123 7 7 199 8 195 2.73e-12 68.6
MS.gene39093.t1 AT1G16930 30.303 198 123 7 7 199 8 195 2.73e-12 68.6
MS.gene39093.t1 AT1G16930 30.303 198 123 7 7 199 8 195 2.73e-12 68.6
MS.gene39093.t1 AT5G53635 30.622 209 124 10 16 218 2 195 3.58e-12 68.2
MS.gene39093.t1 AT4G10400 30.808 198 114 7 13 200 1 185 3.80e-12 68.2
MS.gene39093.t1 AT4G10400 30.808 198 114 7 13 200 1 185 3.80e-12 68.2
MS.gene39093.t1 AT4G10400 30.808 198 114 7 13 200 1 185 3.80e-12 68.2
MS.gene39093.t1 AT5G22610 25.785 446 262 21 14 416 18 437 4.20e-12 68.2
MS.gene39093.t1 AT5G22670 30.208 192 115 9 14 199 11 189 5.79e-12 67.4
MS.gene39093.t1 AT1G16940 25.472 212 134 7 1 206 1 194 7.12e-12 67.4
MS.gene39093.t1 AT1G66320 26.961 204 134 7 4 202 19 212 1.14e-11 66.6
MS.gene39093.t1 AT1G66310 27.957 465 245 21 7 415 12 442 1.81e-11 65.9
MS.gene39093.t1 AT4G00160 29.474 190 120 6 14 197 16 197 1.93e-11 65.9
MS.gene39093.t1 AT4G09920 30.769 195 112 7 13 197 1 182 2.33e-11 64.7
MS.gene39093.t1 AT4G09920 30.769 195 112 7 13 197 1 182 2.33e-11 64.7
MS.gene39093.t1 AT4G09920 30.769 195 112 7 13 197 1 182 2.33e-11 64.7
MS.gene39093.t1 AT3G58880 29.500 200 129 6 13 204 2 197 2.50e-11 65.5
MS.gene39093.t1 AT4G14096 30.698 215 130 8 14 218 8 213 2.52e-11 65.9
MS.gene39093.t1 AT4G14096 30.698 215 130 8 14 218 8 213 2.52e-11 65.9
MS.gene39093.t1 AT1G60400 27.184 206 134 5 1 199 1 197 5.45e-11 64.3
MS.gene39093.t1 AT4G09920 30.159 189 121 6 13 197 1 182 5.96e-11 63.5
MS.gene39093.t1 AT4G09920 30.159 189 121 6 13 197 1 182 5.96e-11 63.5
MS.gene39093.t1 AT3G26922 27.731 238 135 8 31 239 2 231 6.09e-11 63.2
MS.gene39093.t1 AT3G26922 27.731 238 135 8 31 239 2 231 6.09e-11 63.2

Find 64 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACTTGAGAGTCTTATTTC+TGG 0.211583 7.4:+18008273 MS.gene39093:CDS
ATCCAATGACAGATACTTTA+TGG 0.217273 7.4:-18008924 None:intergenic
TTAATACTCCTCGACAAAAT+AGG 0.221838 7.4:-18008072 None:intergenic
GATCTTAGACTCACATTATC+TGG 0.222264 7.4:+18008441 MS.gene39093:CDS
GTGATAACTTTAGAAGTTAC+AGG 0.291798 7.4:-18007946 None:intergenic
TTGACATTCTTTACATTTGC+CGG 0.321794 7.4:+18008165 MS.gene39093:CDS
TCCTCGCTTGGTTGATCTTA+AGG 0.333872 7.4:+18009006 MS.gene39093:CDS
CTCCCACTCTCAAAGTCTTA+TGG 0.350449 7.4:+18008361 MS.gene39093:CDS
TTTGATCGAGATGTTTGTTC+TGG 0.354077 7.4:-18008113 None:intergenic
GCATCAAATTCAAAATATTC+AGG 0.356102 7.4:-18008339 None:intergenic
TTTCTAACCTTGGTATTGTA+AGG 0.365718 7.4:-18008513 None:intergenic
TAATACTCCTCGACAAAATA+GGG 0.373617 7.4:-18008071 None:intergenic
GCATTTCTGAAGAGTTGTTA+TGG 0.375426 7.4:+18009340 MS.gene39093:CDS
TGTACATCAAAGACCTAGTT+AGG 0.389200 7.4:+18007818 MS.gene39093:CDS
ATACATTGTATTCTCTTGTA+AGG 0.392741 7.4:+18008140 MS.gene39093:CDS
CTTACTTATACTGTTGGTCT+TGG 0.402082 7.4:+18009285 MS.gene39093:CDS
TTCCAACTCCTCTGAATGCT+CGG 0.404790 7.4:-18009145 None:intergenic
CTTATTGTCTGTTACATTCG+AGG 0.413736 7.4:+18008245 MS.gene39093:CDS
ACTTTAGAAGTTACAGGGCC+AGG 0.432101 7.4:-18007940 None:intergenic
CTCCATAAAGTATCTGTCAT+TGG 0.434647 7.4:+18008922 MS.gene39093:CDS
ATCTTGAAATTGTAGTCATA+AGG 0.483996 7.4:-18008021 None:intergenic
ACTTAAAAGTGCTCCTCGCT+TGG 0.484927 7.4:+18008994 MS.gene39093:CDS
TTACAAGAGAATACAATGTA+TGG 0.487113 7.4:-18008138 None:intergenic
ATCCAATACATTCTCAATGA+AGG 0.488607 7.4:-18009398 None:intergenic
ATGTTCTTATGCAACACAGC+GGG 0.494608 7.4:+18007971 MS.gene39093:CDS
TGGAATTGACAGGTTAAATC+CGG 0.503112 7.4:-18008184 None:intergenic
TCCAACTCCTCTGAATGCTC+GGG 0.503319 7.4:-18009144 None:intergenic
CTTTGATGTACAAGCGTGCT+AGG 0.506024 7.4:-18007807 None:intergenic
CTACAATTTCAAGATCTCAA+TGG 0.512699 7.4:+18008029 MS.gene39093:CDS
GCCCGAGCATTCAGAGGAGT+TGG 0.519376 7.4:+18009143 MS.gene39093:CDS
CATCGTCAAACCGAAGTTGT+GGG 0.523522 7.4:-18007885 None:intergenic
GAGACTCTTACTTATACTGT+TGG 0.541773 7.4:+18009279 MS.gene39093:CDS
AGAAATCAGGTGGAATTGAC+AGG 0.547647 7.4:-18008194 None:intergenic
ACAAAATACTAGTCCTAACT+AGG 0.547719 7.4:-18007831 None:intergenic
CTTTAGAAGTTACAGGGCCA+GGG 0.547725 7.4:-18007939 None:intergenic
TCGATCAATATGATCATGAC+TGG 0.548556 7.4:-18007749 None:intergenic
ATATTGAGCGTTTGAAGTAA+CGG 0.549250 7.4:-18008300 None:intergenic
TCACTATCTTAAGTCGATCA+AGG 0.553035 7.4:-18009182 None:intergenic
TTGTCTGTTACATTCGAGGC+CGG 0.555309 7.4:+18008249 MS.gene39093:CDS
GGACCTCCGTCCCACAACTT+CGG 0.559824 7.4:+18007875 MS.gene39093:CDS
TCATCGTCAAACCGAAGTTG+TGG 0.564883 7.4:-18007886 None:intergenic
ATGTCATCAATAACATTACA+TGG 0.569407 7.4:-18007784 None:intergenic
TCAATTCCACCTGATTTCTG+CGG 0.580662 7.4:+18008198 MS.gene39093:CDS
TCTTAAGTCGATCAAGGCAA+TGG 0.584783 7.4:-18009176 None:intergenic
CTCAATATTGATGATTGTTG+TGG 0.587835 7.4:+18008315 MS.gene39093:CDS
GCTGTGAATTTGAGTGAAAG+AGG 0.588921 7.4:+18008947 MS.gene39093:CDS
TATGACTCTGTCTAACAAGA+AGG 0.594809 7.4:+18007726 None:intergenic
AGCATGCAATGAGTCTGATA+CGG 0.596787 7.4:+18009229 MS.gene39093:CDS
TAGCCATAAGACTTTGAGAG+TGG 0.604440 7.4:-18008364 None:intergenic
GAGGAATGATATCTGCATAC+CGG 0.607865 7.4:-18008874 None:intergenic
TACGAGAATCTCGATGACCC+TGG 0.632706 7.4:+18007922 MS.gene39093:CDS
TTAAAGCCGCAGAAATCAGG+TGG 0.633570 7.4:-18008204 None:intergenic
AGTAAGAGTCTCTAACGATG+TGG 0.634118 7.4:-18009268 None:intergenic
CAATGGAATACATTGATACG+TGG 0.634498 7.4:+18008046 MS.gene39093:CDS
GCAAGCGCCCGAGCATTCAG+AGG 0.637716 7.4:+18009137 MS.gene39093:CDS
TGATAACTTTAGAAGTTACA+GGG 0.637833 7.4:-18007945 None:intergenic
ACCTTAAGATCAACCAAGCG+AGG 0.639054 7.4:-18009007 None:intergenic
CTGTCAGCCTTACAATACCA+AGG 0.642670 7.4:+18008506 MS.gene39093:CDS
AGCCATAAGACTTTGAGAGT+GGG 0.644910 7.4:-18008363 None:intergenic
GTCAAACCGAAGTTGTGGGA+CGG 0.658111 7.4:-18007881 None:intergenic
AATAAGACTCTCAAGTACAC+CGG 0.679738 7.4:-18008268 None:intergenic
AAACCGAAGTTGTGGGACGG+AGG 0.683191 7.4:-18007878 None:intergenic
TGTTCTTATGCAACACAGCG+GGG 0.716834 7.4:+18007972 MS.gene39093:CDS
GATGTTCTTATGCAACACAG+CGG 0.783463 7.4:+18007970 MS.gene39093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTATTTTTCAGTT+GGG + chr7.4:18008556-18008575 MS.gene39093:intron 10.0%
!!! TATATTTATTATTTTTCAGT+TGG + chr7.4:18008555-18008574 MS.gene39093:intron 10.0%
! ATACATTGTATTCTCTTGTA+AGG + chr7.4:18008140-18008159 MS.gene39093:CDS 25.0%
! ATCTTGAAATTGTAGTCATA+AGG - chr7.4:18008024-18008043 None:intergenic 25.0%
! ATGTCATCAATAACATTACA+TGG - chr7.4:18007787-18007806 None:intergenic 25.0%
! GCATCAAATTCAAAATATTC+AGG - chr7.4:18008342-18008361 None:intergenic 25.0%
! TTACAAGAGAATACAATGTA+TGG - chr7.4:18008141-18008160 None:intergenic 25.0%
!! CTAGTATTTTGTCAAAAAAG+TGG + chr7.4:18007842-18007861 MS.gene39093:CDS 25.0%
!! TGATAACTTTAGAAGTTACA+GGG - chr7.4:18007948-18007967 None:intergenic 25.0%
!!! CAATGTTGAATTTTGATTGA+TGG + chr7.4:18008751-18008770 MS.gene39093:intron 25.0%
ACAAAATACTAGTCCTAACT+AGG - chr7.4:18007834-18007853 None:intergenic 30.0%
ACAACTTTCAATGTACATGT+TGG - chr7.4:18008783-18008802 None:intergenic 30.0%
ATATGCACAAACAACACTAT+GGG - chr7.4:18008824-18008843 None:intergenic 30.0%
ATCCAATGACAGATACTTTA+TGG - chr7.4:18008927-18008946 None:intergenic 30.0%
CTACAATTTCAAGATCTCAA+TGG + chr7.4:18008029-18008048 MS.gene39093:CDS 30.0%
TAATACTCCTCGACAAAATA+GGG - chr7.4:18008074-18008093 None:intergenic 30.0%
TTAATACTCCTCGACAAAAT+AGG - chr7.4:18008075-18008094 None:intergenic 30.0%
TTGACATTCTTTACATTTGC+CGG + chr7.4:18008165-18008184 MS.gene39093:CDS 30.0%
TTTCAATGTACATGTTGGAT+TGG - chr7.4:18008778-18008797 None:intergenic 30.0%
TTTCTAACCTTGGTATTGTA+AGG - chr7.4:18008516-18008535 None:intergenic 30.0%
! ATATTGAGCGTTTGAAGTAA+CGG - chr7.4:18008303-18008322 None:intergenic 30.0%
! CTCAATATTGATGATTGTTG+TGG + chr7.4:18008315-18008334 MS.gene39093:CDS 30.0%
! GTATTTTGTCAAAAAAGTGG+AGG + chr7.4:18007845-18007864 MS.gene39093:CDS 30.0%
! GTGATAACTTTAGAAGTTAC+AGG - chr7.4:18007949-18007968 None:intergenic 30.0%
! TTCTAGCTGATATGTTAGTT+TGG + chr7.4:18008584-18008603 MS.gene39093:intron 30.0%
!!! GAAATCCTCTCAATGTTTTT+TGG - chr7.4:18008483-18008502 None:intergenic 30.0%
!!! GTTTTGTTGTTTGTATGCAT+AGG + chr7.4:18008850-18008869 MS.gene39093:intron 30.0%
AATAAGACTCTCAAGTACAC+CGG - chr7.4:18008271-18008290 None:intergenic 35.0%
CAATGGAATACATTGATACG+TGG + chr7.4:18008046-18008065 MS.gene39093:CDS 35.0%
CTTATTGTCTGTTACATTCG+AGG + chr7.4:18008245-18008264 MS.gene39093:CDS 35.0%
GAGACTCTTACTTATACTGT+TGG + chr7.4:18009279-18009298 MS.gene39093:CDS 35.0%
GATATGCACAAACAACACTA+TGG - chr7.4:18008825-18008844 None:intergenic 35.0%
GATCTTAGACTCACATTATC+TGG + chr7.4:18008441-18008460 MS.gene39093:CDS 35.0%
GTTTGCCAAAAAACATTGAG+AGG + chr7.4:18008475-18008494 MS.gene39093:CDS 35.0%
TCACTATCTTAAGTCGATCA+AGG - chr7.4:18009185-18009204 None:intergenic 35.0%
TCGATCAATATGATCATGAC+TGG - chr7.4:18007752-18007771 None:intergenic 35.0%
TGGAATTGACAGGTTAAATC+CGG - chr7.4:18008187-18008206 None:intergenic 35.0%
TGTACATCAAAGACCTAGTT+AGG + chr7.4:18007818-18007837 MS.gene39093:CDS 35.0%
TTTGATCGAGATGTTTGTTC+TGG - chr7.4:18008116-18008135 None:intergenic 35.0%
! CAAAAAAGTGGAGGTATATG+TGG + chr7.4:18007854-18007873 MS.gene39093:CDS 35.0%
! CTCCATAAAGTATCTGTCAT+TGG + chr7.4:18008922-18008941 MS.gene39093:CDS 35.0%
! CTTACTTATACTGTTGGTCT+TGG + chr7.4:18009285-18009304 MS.gene39093:CDS 35.0%
! GCATTTCTGAAGAGTTGTTA+TGG + chr7.4:18009340-18009359 MS.gene39093:CDS 35.0%
!! GTACTTGAGAGTCTTATTTC+TGG + chr7.4:18008273-18008292 MS.gene39093:CDS 35.0%
!!! AATGAAGTTTTTAGCAGCGT+GGG - chr7.4:18008899-18008918 None:intergenic 35.0%
!!! GTGATGTTGTTTTCTAACCT+TGG - chr7.4:18008526-18008545 None:intergenic 35.0%
AGAAATCAGGTGGAATTGAC+AGG - chr7.4:18008197-18008216 None:intergenic 40.0%
AGCATGCAATGAGTCTGATA+CGG + chr7.4:18009229-18009248 MS.gene39093:CDS 40.0%
AGTAAGAGTCTCTAACGATG+TGG - chr7.4:18009271-18009290 None:intergenic 40.0%
ATCACCACTTCTATCTAGCT+TGG + chr7.4:18008666-18008685 MS.gene39093:intron 40.0%
ATGTTCTTATGCAACACAGC+GGG + chr7.4:18007971-18007990 MS.gene39093:CDS 40.0%
GAGGAATGATATCTGCATAC+CGG - chr7.4:18008877-18008896 None:intergenic 40.0%
GATGTTCTTATGCAACACAG+CGG + chr7.4:18007970-18007989 MS.gene39093:CDS 40.0%
GCTGTGAATTTGAGTGAAAG+AGG + chr7.4:18008947-18008966 MS.gene39093:CDS 40.0%
GTTGTTTGTATGCATAGGTC+CGG + chr7.4:18008855-18008874 MS.gene39093:intron 40.0%
TCAATTCCACCTGATTTCTG+CGG + chr7.4:18008198-18008217 MS.gene39093:CDS 40.0%
TCTTAAGTCGATCAAGGCAA+TGG - chr7.4:18009179-18009198 None:intergenic 40.0%
! AGCCATAAGACTTTGAGAGT+GGG - chr7.4:18008366-18008385 None:intergenic 40.0%
! TAGCCATAAGACTTTGAGAG+TGG - chr7.4:18008367-18008386 None:intergenic 40.0%
!!! CTTTTAAAGCCGCAGAAATC+AGG - chr7.4:18008210-18008229 None:intergenic 40.0%
!!! GAATGAAGTTTTTAGCAGCG+TGG - chr7.4:18008900-18008919 None:intergenic 40.0%
ACCTTAAGATCAACCAAGCG+AGG - chr7.4:18009010-18009029 None:intergenic 45.0%
CATCGTCAAACCGAAGTTGT+GGG - chr7.4:18007888-18007907 None:intergenic 45.0%
CTCCCACTCTCAAAGTCTTA+TGG + chr7.4:18008361-18008380 MS.gene39093:CDS 45.0%
CTGTCAGCCTTACAATACCA+AGG + chr7.4:18008506-18008525 MS.gene39093:CDS 45.0%
CTTTGATGTACAAGCGTGCT+AGG - chr7.4:18007810-18007829 None:intergenic 45.0%
GATGCCAAGCTAGATAGAAG+TGG - chr7.4:18008673-18008692 None:intergenic 45.0%
TCATCGTCAAACCGAAGTTG+TGG - chr7.4:18007889-18007908 None:intergenic 45.0%
TCCTCGCTTGGTTGATCTTA+AGG + chr7.4:18009006-18009025 MS.gene39093:CDS 45.0%
TGTTCTTATGCAACACAGCG+GGG + chr7.4:18007972-18007991 MS.gene39093:CDS 45.0%
TTAAAGCCGCAGAAATCAGG+TGG - chr7.4:18008207-18008226 None:intergenic 45.0%
TTCCAACTCCTCTGAATGCT+CGG - chr7.4:18009148-18009167 None:intergenic 45.0%
TTGTCTGTTACATTCGAGGC+CGG + chr7.4:18008249-18008268 MS.gene39093:CDS 45.0%
! ACTTTAGAAGTTACAGGGCC+AGG - chr7.4:18007943-18007962 None:intergenic 45.0%
! CTTTAGAAGTTACAGGGCCA+GGG - chr7.4:18007942-18007961 None:intergenic 45.0%
! TTCTATCTAGCTTGGCATCG+TGG + chr7.4:18008674-18008693 MS.gene39093:intron 45.0%
!! ACTTAAAAGTGCTCCTCGCT+TGG + chr7.4:18008994-18009013 MS.gene39093:CDS 45.0%
GTCAAACCGAAGTTGTGGGA+CGG - chr7.4:18007884-18007903 None:intergenic 50.0%
TACGAGAATCTCGATGACCC+TGG + chr7.4:18007922-18007941 MS.gene39093:CDS 50.0%
TCCAACTCCTCTGAATGCTC+GGG - chr7.4:18009147-18009166 None:intergenic 50.0%
! CGTGGATCCCTATTTTGTCG+AGG + chr7.4:18008064-18008083 MS.gene39093:CDS 50.0%
!!! GAAGTTTTTAGCAGCGTGGG+AGG - chr7.4:18008896-18008915 None:intergenic 50.0%
AAACCGAAGTTGTGGGACGG+AGG - chr7.4:18007881-18007900 None:intergenic 55.0%
GCCCGAGCATTCAGAGGAGT+TGG + chr7.4:18009143-18009162 MS.gene39093:CDS 60.0%
GGACCTCCGTCCCACAACTT+CGG + chr7.4:18007875-18007894 MS.gene39093:CDS 60.0%
GCAAGCGCCCGAGCATTCAG+AGG + chr7.4:18009137-18009156 MS.gene39093:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 18007727 18009407 18007727 ID=MS.gene39093
chr7.4 mRNA 18007727 18009407 18007727 ID=MS.gene39093.t1;Parent=MS.gene39093
chr7.4 exon 18007727 18008527 18007727 ID=MS.gene39093.t1.exon1;Parent=MS.gene39093.t1
chr7.4 CDS 18007727 18008527 18007727 ID=cds.MS.gene39093.t1;Parent=MS.gene39093.t1
chr7.4 exon 18008872 18009027 18008872 ID=MS.gene39093.t1.exon2;Parent=MS.gene39093.t1
chr7.4 CDS 18008872 18009027 18008872 ID=cds.MS.gene39093.t1;Parent=MS.gene39093.t1
chr7.4 exon 18009114 18009407 18009114 ID=MS.gene39093.t1.exon3;Parent=MS.gene39093.t1
chr7.4 CDS 18009114 18009407 18009114 ID=cds.MS.gene39093.t1;Parent=MS.gene39093.t1
Gene Sequence

>MS.gene39093

ATGACTCTGTCTAACAAGAAGGCCAGTCATGATCATATTGATCGAATCAGTGACTTACCATGTAATGTTATTGATGACATCCTAGCACGCTTGTACATCAAAGACCTAGTTAGGACTAGTATTTTGTCAAAAAAGTGGAGGTATATGTGGACCTCCGTCCCACAACTTCGGTTTGACGATGACTTTTTTGATGAGTACGAGAATCTCGATGACCCTGGCCCTGTAACTTCTAAAGTTATCACAGATGTTCTTATGCAACACAGCGGGGTGATGCATAAGTTTCATCTTTACGTACCTTATGACTACAATTTCAAGATCTCAATGGAATACATTGATACGTGGATCCCTATTTTGTCGAGGAGTATTAAACATCTCGAGCTTGTGAGCCAGAACAAACATCTCGATCAAATGCCATACATTGTATTCTCTTGTAAGGAATTGACATTCTTTACATTTGCCGGATTTAACCTGTCAATTCCACCTGATTTCTGCGGCTTTAAAAGATTGCTTAATCTTCACTTATTGTCTGTTACATTCGAGGCCGGTGTACTTGAGAGTCTTATTTCTGGTTGTCCGTTACTTCAAACGCTCAATATTGATGATTGTTGTGGTCCTGAATATTTTGAATTTGATGCTCCCACTCTCAAAGTCTTATGGCTAGATTTTGTTAAAGATATAAAGTCAATTTGTCTCAAGAAAGCAAAGAATCTGATTGATCTTAGACTCACATTATCTGGTTTGATCAAAAGTTTGCCAAAAAACATTGAGAGGATTTCTATCTGTCAGCCTTACAATACCAAGGTTAGAAAACAACATCACTATAAATTGTATATTTATTATTTTTCAGTTGGGTAATATTCTAGCTGATATGTTAGTTTGGTAGATTTGATATGAAACAAAGAGCATAATACTATGTTGACGTATATTTGATATTTTTTTATCACCACTTCTATCTAGCTTGGCATCGTGGTTTGATCTTTTACAGACTATATCTTACTCTTTTATTGTACATTTAAAAGAGAAGCAATGTTGAATTTTGATTGATGGTCCAATCCAACATGTACATTGAAAGTTGTTATTTTTCACTTGTAAGTCCCATAGTGTTGTTTGTGCATATCTCATTGTTTTGTTGTTTGTATGCATAGGTCCGGTATGCAGATATCATTCCTCCCACGCTGCTAAAAACTTCATTCAGCTCCATAAAGTATCTGTCATTGGATGCTGTGAATTTGAGTGAAAGAGGAGAACTTTTGCATATTGTTAGTGTACTTAAAAGTGCTCCTCGCTTGGTTGATCTTAAGGTGAACATGAACATCTATTCTTCTTAGTTTTTTTTCTTATTGTTGTATTTTGACTCTTAATTATTATTTTTTTTTATATAATTCAGTGTTACAGCTACGTAGATATTACGCAAGCGCCCGAGCATTCAGAGGAGTTGGAATGCAGTAGCCATTGCCTTGATCGACTTAAGATAGTGAATATCAACTTTATATTTAGCTCTCAGCATGCAATGAGTCTGATACGGTTCATACTTGCAAATTCCACATCGTTAGAGACTCTTACTTATACTGTTGGTCTTGGTTTTGAGAAATTAGATGCAGCTATGTTGTTAAGCATTTCTGAAGAGTTGTTATGGATGAAACGAGCATCACAAAGCGCGCATGTCAAGTTCCTTCATTGA
Protein sequence

>MS.gene39093.t1

MTLSNKKASHDHIDRISDLPCNVIDDILARLYIKDLVRTSILSKKWRYMWTSVPQLRFDDDFFDEYENLDDPGPVTSKVITDVLMQHSGVMHKFHLYVPYDYNFKISMEYIDTWIPILSRSIKHLELVSQNKHLDQMPYIVFSCKELTFFTFAGFNLSIPPDFCGFKRLLNLHLLSVTFEAGVLESLISGCPLLQTLNIDDCCGPEYFEFDAPTLKVLWLDFVKDIKSICLKKAKNLIDLRLTLSGLIKSLPKNIERISICQPYNTKVRYADIIPPTLLKTSFSSIKYLSLDAVNLSERGELLHIVSVLKSAPRLVDLKCYSYVDITQAPEHSEELECSSHCLDRLKIVNINFIFSSQHAMSLIRFILANSTSLETLTYTVGLGFEKLDAAMLLSISEELLWMKRASQSAHVKFLH