Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39234.t1 | XP_013467777.1 | 96.9 | 419 | 12 | 1 | 1 | 418 | 1 | 419 | 4.30E-235 | 823.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39234.t1 | Q5IH14 | 70.0 | 414 | 119 | 2 | 1 | 410 | 1 | 413 | 3.5e-169 | 595.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39234.t1 | Q9FQ10 | 96.9 | 419 | 12 | 1 | 1 | 418 | 1 | 419 | 3.1e-235 | 823.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46507 | MS.gene39234 | PPI |
| MS.gene034660 | MS.gene39234 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39234.t1 | MTR_1g054980 | 96.897 | 419 | 12 | 1 | 1 | 418 | 1 | 419 | 0.0 | 834 |
| MS.gene39234.t1 | MTR_1g040560 | 60.941 | 425 | 157 | 3 | 1 | 418 | 1 | 423 | 0.0 | 536 |
| MS.gene39234.t1 | MTR_1g040560 | 53.922 | 306 | 132 | 3 | 120 | 418 | 12 | 315 | 2.58e-115 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39234.t1 | AT2G35840 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| MS.gene39234.t1 | AT2G35840 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| MS.gene39234.t1 | AT2G35840 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| MS.gene39234.t1 | AT2G35840 | 69.267 | 423 | 124 | 3 | 1 | 418 | 1 | 422 | 0.0 | 602 |
| MS.gene39234.t1 | AT1G51420 | 62.972 | 424 | 150 | 4 | 1 | 418 | 1 | 423 | 0.0 | 531 |
| MS.gene39234.t1 | AT1G51420 | 62.972 | 424 | 150 | 4 | 1 | 418 | 2 | 424 | 0.0 | 530 |
| MS.gene39234.t1 | AT1G51420 | 62.972 | 424 | 150 | 4 | 1 | 418 | 2 | 424 | 0.0 | 530 |
| MS.gene39234.t1 | AT1G51420 | 62.972 | 424 | 150 | 4 | 1 | 418 | 2 | 424 | 0.0 | 530 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.13e-174 | 494 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.13e-174 | 494 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.13e-174 | 494 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 1 | 412 | 1.13e-174 | 494 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 13 | 424 | 1.60e-174 | 495 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 13 | 424 | 1.60e-174 | 495 |
| MS.gene39234.t1 | AT3G52340 | 58.354 | 413 | 170 | 2 | 1 | 412 | 42 | 453 | 3.52e-174 | 495 |
| MS.gene39234.t1 | AT3G54270 | 54.327 | 416 | 185 | 3 | 1 | 412 | 1 | 415 | 2.43e-166 | 474 |
Find 108 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTCCTTGTCCCATTTC+TGG | 0.095011 | 1.1:-42592989 | None:intergenic |
| AGAGGCTCTTTCTAAGATTT+TGG | 0.167196 | 1.1:+42593289 | MS.gene39234:CDS |
| TTCAGCATTCCAGGAGTTTA+TGG | 0.202008 | 1.1:+42593630 | MS.gene39234:CDS |
| GCCTCAGAGCGTTGTGCATC+TGG | 0.226095 | 1.1:+42593858 | MS.gene39234:CDS |
| TCTGAGGCATGCAGAATCTT+AGG | 0.240646 | 1.1:-42593843 | None:intergenic |
| GAATAGCTCGGCATCATTTC+CGG | 0.265204 | 1.1:-42593610 | None:intergenic |
| CACAGATAAGTTCGGATATA+TGG | 0.284176 | 1.1:+42594990 | MS.gene39234:CDS |
| CATCTCTTGGGGACAGGTTT+GGG | 0.285854 | 1.1:-42593914 | None:intergenic |
| TACACATACCTTTCTTAGTA+TGG | 0.291808 | 1.1:-42595155 | None:intergenic |
| GGCTGGTGAAGTTTGATAAA+TGG | 0.304367 | 1.1:+42595011 | MS.gene39234:CDS |
| ACATCTCTTGGGGACAGGTT+TGG | 0.339450 | 1.1:-42593915 | None:intergenic |
| TTCAAGAATTGAACCAGAAA+TGG | 0.339783 | 1.1:+42592976 | MS.gene39234:CDS |
| ATATCGCCACGATTCTTTGC+TGG | 0.355065 | 1.1:+42592815 | MS.gene39234:CDS |
| TGGTGCTGACTATTCTCTTA+AGG | 0.356146 | 1.1:+42594886 | MS.gene39234:CDS |
| GTGGGAACTGAGATTACTTA+TGG | 0.363501 | 1.1:+42592924 | MS.gene39234:CDS |
| AGGGGAAACAGTTTAGGATA+TGG | 0.373276 | 1.1:+42594948 | MS.gene39234:CDS |
| ACAGACATGATGGTTATATC+TGG | 0.375892 | 1.1:-42592903 | None:intergenic |
| ACAAACAGGGGAAACAGTTT+AGG | 0.376401 | 1.1:+42594942 | MS.gene39234:CDS |
| GCTGTTTATTGCTGCTATAA+AGG | 0.379309 | 1.1:+42594049 | MS.gene39234:CDS |
| TCTTTGCTGGTGTTCTCAAC+TGG | 0.382613 | 1.1:+42592828 | MS.gene39234:CDS |
| GTTATATCTGGAGTTATCAT+AGG | 0.393312 | 1.1:-42592891 | None:intergenic |
| TTTGAGGTTCAATGCCCTTT+GGG | 0.393753 | 1.1:+42592785 | MS.gene39234:CDS |
| GCCGAGCTATTCAGCATTCC+AGG | 0.396491 | 1.1:+42593621 | MS.gene39234:CDS |
| AAAGGTGTATGGTAACAAAC+AGG | 0.400977 | 1.1:+42594928 | MS.gene39234:CDS |
| CTCAGTTGTTTGTAGAGTAA+AGG | 0.417936 | 1.1:-42592858 | None:intergenic |
| CAATGTCTGAAACATCTCTT+GGG | 0.420133 | 1.1:-42593926 | None:intergenic |
| CCAATGTCTGAAACATCTCT+TGG | 0.421240 | 1.1:-42593927 | None:intergenic |
| GCCACTGCAGTAATTCCTCT+TGG | 0.422000 | 1.1:-42593797 | None:intergenic |
| GGTGTGTATATCCACCCTTC+TGG | 0.427354 | 1.1:+42594866 | MS.gene39234:CDS |
| TGCTGGTGTTCTCAACTGGC+AGG | 0.441395 | 1.1:+42592832 | MS.gene39234:CDS |
| TTTAATATGCAGGATCCATC+TGG | 0.447565 | 1.1:+42594845 | MS.gene39234:intron |
| TTTGTCTGTTAAGTGAAAAG+TGG | 0.454824 | 1.1:+42594000 | MS.gene39234:CDS |
| GCTGGTGAAGTTTGATAAAT+GGG | 0.455050 | 1.1:+42595012 | MS.gene39234:CDS |
| AAATCGATGGTTCCCGATGA+TGG | 0.472518 | 1.1:+42592948 | MS.gene39234:CDS |
| AGTACCTGAGGCTTAAGTTC+AGG | 0.473435 | 1.1:-42593035 | None:intergenic |
| GCAGGCAGAAACAGAACAAC+GGG | 0.475371 | 1.1:+42593217 | MS.gene39234:intron |
| CTGAAACATCTCTTGGGGAC+AGG | 0.480413 | 1.1:-42593920 | None:intergenic |
| TCCAGGAGTTTATGGTGTCA+TGG | 0.483135 | 1.1:+42593638 | MS.gene39234:CDS |
| CGATGGTTCCCGATGATGGA+TGG | 0.484939 | 1.1:+42592952 | MS.gene39234:CDS |
| CCACTGCAGTAATTCCTCTT+GGG | 0.490113 | 1.1:-42593796 | None:intergenic |
| CCAAGAGATGTTTCAGACAT+TGG | 0.490731 | 1.1:+42593927 | MS.gene39234:CDS |
| GTTTCCTGAACTTAAGCCTC+AGG | 0.490979 | 1.1:+42593031 | MS.gene39234:CDS |
| TCAAGAATTGAACCAGAAAT+GGG | 0.492584 | 1.1:+42592977 | MS.gene39234:CDS |
| CTGAGGCATGCAGAATCTTA+GGG | 0.499882 | 1.1:-42593842 | None:intergenic |
| ACCATGACACCATAAACTCC+TGG | 0.503899 | 1.1:-42593639 | None:intergenic |
| GCCCAAGTTAAAATGACCTA+TGG | 0.506142 | 1.1:-42593892 | None:intergenic |
| CCTGGTAATACTCTAGTTTG+TGG | 0.510248 | 1.1:+42593582 | MS.gene39234:CDS |
| CTCAGTTCCCACAGACATGA+TGG | 0.515217 | 1.1:-42592913 | None:intergenic |
| AGGATTCCGATTGGTTCACC+TGG | 0.515792 | 1.1:+42595974 | MS.gene39234:intron |
| TTCTTGAACCCATCCATCAT+CGG | 0.519768 | 1.1:-42592961 | None:intergenic |
| TCTTGAACCCATCCATCATC+GGG | 0.522162 | 1.1:-42592960 | None:intergenic |
| GAAACAGTTTAGGATATGGT+TGG | 0.522204 | 1.1:+42594952 | MS.gene39234:CDS |
| CCTCAGAGCGTTGTGCATCT+GGG | 0.531754 | 1.1:+42593859 | MS.gene39234:CDS |
| TGTCACTACCATACTAAGAA+AGG | 0.533747 | 1.1:+42595147 | MS.gene39234:CDS |
| TACCATTGTGTGATCGAGAT+CGG | 0.537477 | 1.1:-42592499 | None:intergenic |
| GTTGGCTACACAGATAAGTT+CGG | 0.538393 | 1.1:+42594982 | MS.gene39234:CDS |
| CAGATTGTTCCAACCATGAC+TGG | 0.550666 | 1.1:-42596008 | None:intergenic |
| ATGCATCCAGGTGAACCAAT+CGG | 0.552499 | 1.1:-42595980 | None:intergenic |
| ACGTGCAGAAGTTGAGAACT+CGG | 0.555017 | 1.1:+42594025 | MS.gene39234:CDS |
| ACTCTAGTTTGTGGTGACTC+CGG | 0.555273 | 1.1:+42593591 | MS.gene39234:CDS |
| GACATATTACCACAAGGTGC+TGG | 0.557425 | 1.1:+42593504 | MS.gene39234:CDS |
| TCCTGGAATGCTGAATAGCT+CGG | 0.559117 | 1.1:-42593622 | None:intergenic |
| GCGAACTATTCTCTGCATCA+TGG | 0.563230 | 1.1:-42592761 | None:intergenic |
| AGATATAACCATCATGTCTG+TGG | 0.566248 | 1.1:+42592905 | MS.gene39234:CDS |
| GATAAGTTCGGATATATGGC+TGG | 0.566741 | 1.1:+42594994 | MS.gene39234:CDS |
| ATTACCAGGTAGCTTTCCCT+CGG | 0.568172 | 1.1:-42593568 | None:intergenic |
| GCGATATGAAGCTTCCCAAA+GGG | 0.568213 | 1.1:-42592799 | None:intergenic |
| GAGACCGAGGGAAAGCTACC+TGG | 0.568897 | 1.1:+42593564 | MS.gene39234:CDS |
| GATGGTTCCCGATGATGGAT+GGG | 0.569266 | 1.1:+42592953 | MS.gene39234:CDS |
| AGAGAATAGTCAGCACCAGA+AGG | 0.569688 | 1.1:-42594881 | None:intergenic |
| TTGGGTTTCAGGATTCCGAT+TGG | 0.574395 | 1.1:+42595965 | MS.gene39234:intron |
| CCACAAACTAGAGTATTACC+AGG | 0.577400 | 1.1:-42593582 | None:intergenic |
| GATATAACCATCATGTCTGT+GGG | 0.578577 | 1.1:+42592906 | MS.gene39234:CDS |
| CCGTCTATATTATCCACTCA+TGG | 0.588603 | 1.1:-42596032 | None:intergenic |
| GGACAAGGACATTGTCATTG+AGG | 0.590293 | 1.1:+42592998 | MS.gene39234:CDS |
| GGATGCATGTGCACCAGTCA+TGG | 0.590310 | 1.1:+42595995 | MS.gene39234:CDS |
| GGCGATATGAAGCTTCCCAA+AGG | 0.593384 | 1.1:-42592800 | None:intergenic |
| GATTACTTATGGAAAATCGA+TGG | 0.601557 | 1.1:+42592935 | MS.gene39234:CDS |
| AATAGTCAGCACCAGAAGGG+TGG | 0.601940 | 1.1:-42594877 | None:intergenic |
| GATATGGTTGGACAATGTGT+TGG | 0.606614 | 1.1:+42594964 | MS.gene39234:CDS |
| TGACCTTTGCCAGCACCTTG+TGG | 0.606824 | 1.1:-42593513 | None:intergenic |
| GATGTTAAAATAATATATAG+CGG | 0.612438 | 1.1:+42593468 | MS.gene39234:CDS |
| GAGAATAGTCAGCACCAGAA+GGG | 0.613279 | 1.1:-42594880 | None:intergenic |
| GCATGTGCACCAGTCATGGT+TGG | 0.613768 | 1.1:+42595999 | MS.gene39234:CDS |
| GGGTGGATATACACACCAGA+TGG | 0.615271 | 1.1:-42594860 | None:intergenic |
| TCTGGGATTATACAAGCCAT+AGG | 0.615679 | 1.1:+42593876 | MS.gene39234:CDS |
| TTACCACAAGGTGCTGGCAA+AGG | 0.617832 | 1.1:+42593510 | MS.gene39234:CDS |
| TGGAACAATCTGACCATGAG+TGG | 0.618034 | 1.1:+42596019 | MS.gene39234:CDS |
| CCCAGATGCACAACGCTCTG+AGG | 0.620546 | 1.1:-42593859 | None:intergenic |
| TGACTGGTGCACATGCATCC+AGG | 0.624058 | 1.1:-42595992 | None:intergenic |
| GCCAACTTGCAGATGAAGAG+CGG | 0.631632 | 1.1:+42595113 | MS.gene39234:intron |
| TTTGATAAATGGGAGTTACA+CGG | 0.646192 | 1.1:+42595022 | MS.gene39234:CDS |
| CAATGCTAAGCAAGTGACAG+AGG | 0.647164 | 1.1:+42593271 | MS.gene39234:CDS |
| ATATAGCGGAGGAGTTGACA+TGG | 0.647276 | 1.1:+42593482 | MS.gene39234:CDS |
| CTTGCAGATGAAGAGCGGCA+TGG | 0.655839 | 1.1:+42595118 | MS.gene39234:intron |
| GTTAAAATAATATATAGCGG+AGG | 0.662156 | 1.1:+42593471 | MS.gene39234:CDS |
| AGGTGTATGGTAACAAACAG+GGG | 0.662925 | 1.1:+42594930 | MS.gene39234:CDS |
| TTCCGATCTCGATCACACAA+TGG | 0.663470 | 1.1:+42592497 | MS.gene39234:CDS |
| GTAGGTAAGCAACGCCCAAG+AGG | 0.666196 | 1.1:+42593782 | MS.gene39234:intron |
| CCCAAGAGGAATTACTGCAG+TGG | 0.669784 | 1.1:+42593796 | MS.gene39234:CDS |
| TGCAGGCAGAAACAGAACAA+CGG | 0.681696 | 1.1:+42593216 | MS.gene39234:intron |
| CTTTACTCTACAAACAACTG+AGG | 0.684288 | 1.1:+42592859 | MS.gene39234:CDS |
| AAGGTGTATGGTAACAAACA+GGG | 0.688423 | 1.1:+42594929 | MS.gene39234:CDS |
| AGAACACCAGCAAAGAATCG+TGG | 0.694109 | 1.1:-42592821 | None:intergenic |
| AATGTCTGAAACATCTCTTG+GGG | 0.696343 | 1.1:-42593925 | None:intergenic |
| ATTGAACCAGAAATGGGACA+AGG | 0.722798 | 1.1:+42592983 | MS.gene39234:CDS |
| GACATGGACATATTACCACA+AGG | 0.723394 | 1.1:+42593498 | MS.gene39234:CDS |
| ATAGACTCAAATCTTCTGCG+CGG | 0.750289 | 1.1:+42592463 | MS.gene39234:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATACTGAAAATA+TGG | - | chr1.1:42593688-42593707 | None:intergenic | 10.0% |
| !! | GATGTTAAAATAATATATAG+CGG | + | chr1.1:42593468-42593487 | MS.gene39234:CDS | 15.0% |
| !! | TTAAAAGACTTAAATTTCAT+AGG | - | chr1.1:42595629-42595648 | None:intergenic | 15.0% |
| !!! | ATCATTAGTTATTTTTTATG+AGG | + | chr1.1:42594556-42594575 | MS.gene39234:intron | 15.0% |
| !!! | GTATATAAATATTTTGAGAA+AGG | + | chr1.1:42594910-42594929 | MS.gene39234:CDS | 15.0% |
| !!! | TAGATTATTAGTCTAAAATT+GGG | + | chr1.1:42593723-42593742 | MS.gene39234:intron | 15.0% |
| !!! | TTAGATTATTAGTCTAAAAT+TGG | + | chr1.1:42593722-42593741 | MS.gene39234:intron | 15.0% |
| !! | AAAAAAAAAATGCACCAAAA+AGG | - | chr1.1:42594193-42594212 | None:intergenic | 20.0% |
| !! | AAAAATACTGAAAATATGGT+TGG | - | chr1.1:42593684-42593703 | None:intergenic | 20.0% |
| !! | CAAAAAATTACACAATGTTA+TGG | - | chr1.1:42593441-42593460 | None:intergenic | 20.0% |
| !! | CAAAATGTAGAATATCTAAT+TGG | - | chr1.1:42594606-42594625 | None:intergenic | 20.0% |
| !! | CGAGAAAAATATAATACTAA+TGG | - | chr1.1:42592555-42592574 | None:intergenic | 20.0% |
| !! | CTAATATATCTATGAAATGT+AGG | - | chr1.1:42595711-42595730 | None:intergenic | 20.0% |
| !! | TCAATATATGTTTATCACTA+GGG | + | chr1.1:42595514-42595533 | MS.gene39234:intron | 20.0% |
| !! | TGCTAATAAGAATGAAATTT+GGG | + | chr1.1:42595947-42595966 | MS.gene39234:intron | 20.0% |
| !! | TTCAATATATGTTTATCACT+AGG | + | chr1.1:42595513-42595532 | MS.gene39234:intron | 20.0% |
| !! | TTGCTAATAAGAATGAAATT+TGG | + | chr1.1:42595946-42595965 | MS.gene39234:intron | 20.0% |
| !!! | ACTATTTTGTTTTAATATGC+AGG | + | chr1.1:42594835-42594854 | MS.gene39234:intron | 20.0% |
| !!! | ATATTATTTTAACATCCAAC+TGG | - | chr1.1:42593464-42593483 | None:intergenic | 20.0% |
| !!! | ATGTATCTAAAGTTAAATCA+AGG | - | chr1.1:42594407-42594426 | None:intergenic | 20.0% |
| !!! | ATTTTCACTATATTTTTACG+CGG | + | chr1.1:42595913-42595932 | MS.gene39234:intron | 20.0% |
| !!! | CTTTTAATTTGCCAATAATT+AGG | + | chr1.1:42595642-42595661 | MS.gene39234:intron | 20.0% |
| !!! | GTAATGCATAAGTATTTTTA+TGG | + | chr1.1:42595175-42595194 | MS.gene39234:intron | 20.0% |
| !!! | TGATGAATATTATCTTGTTT+TGG | + | chr1.1:42594476-42594495 | MS.gene39234:intron | 20.0% |
| !!! | TGATTCATATTTTGAATGAT+CGG | + | chr1.1:42593190-42593209 | MS.gene39234:intron | 20.0% |
| !!! | TGATTTAACTTTAGATACAT+TGG | + | chr1.1:42594407-42594426 | MS.gene39234:intron | 20.0% |
| !!! | TGCTTTAGTAAAAAGAATTT+TGG | - | chr1.1:42594168-42594187 | None:intergenic | 20.0% |
| !!! | TTTGGTAATATTTTCTACTT+TGG | + | chr1.1:42594439-42594458 | MS.gene39234:intron | 20.0% |
| ! | ATGCATAAAGAACATACAAT+AGG | - | chr1.1:42594115-42594134 | None:intergenic | 25.0% |
| ! | GAAATCATTTCTGAGTAAAA+TGG | - | chr1.1:42593348-42593367 | None:intergenic | 25.0% |
| ! | GTGAAAATGCAAATTAGTAA+CGG | - | chr1.1:42595901-42595920 | None:intergenic | 25.0% |
| ! | GTTAAAATAATATATAGCGG+AGG | + | chr1.1:42593471-42593490 | MS.gene39234:CDS | 25.0% |
| ! | GTTCAACCATTATAACAATT+CGG | + | chr1.1:42594653-42594672 | MS.gene39234:intron | 25.0% |
| ! | TCTATTCCGAATTGTTATAA+TGG | - | chr1.1:42594662-42594681 | None:intergenic | 25.0% |
| ! | TGACAAATTTATCCCTATAA+TGG | + | chr1.1:42595685-42595704 | MS.gene39234:intron | 25.0% |
| !! | ATTATTAGTTTGAGCAACAA+TGG | + | chr1.1:42593151-42593170 | MS.gene39234:intron | 25.0% |
| !!! | AATATTTTGAGAAAGGTGTA+TGG | + | chr1.1:42594917-42594936 | MS.gene39234:CDS | 25.0% |
| !!! | CTCAAACTTTTTAAGCAAAT+AGG | - | chr1.1:42593547-42593566 | None:intergenic | 25.0% |
| !!! | TATTATCTTGTTTTGGCAAT+TGG | + | chr1.1:42594483-42594502 | MS.gene39234:intron | 25.0% |
| !!! | TGTGGTTTTTAAGAAAACAA+TGG | - | chr1.1:42595310-42595329 | None:intergenic | 25.0% |
| !!! | TTTACTAAAGCATTCCTTTT+TGG | + | chr1.1:42594176-42594195 | MS.gene39234:intron | 25.0% |
| !!! | TTTTTCATTTTCGAGTTTCA+TGG | + | chr1.1:42594208-42594227 | MS.gene39234:intron | 25.0% |
| AAGTTCGAGAGATATAAAAG+AGG | - | chr1.1:42595093-42595112 | None:intergenic | 30.0% | |
| AGTTCGAGAGATATAAAAGA+GGG | - | chr1.1:42595092-42595111 | None:intergenic | 30.0% | |
| ATAGGCAATCTGTAAAAGTA+AGG | - | chr1.1:42594097-42594116 | None:intergenic | 30.0% | |
| ATGAAATGTAGGCCATTATA+GGG | - | chr1.1:42595700-42595719 | None:intergenic | 30.0% | |
| ATGTAAAAACTGCACAAATG+CGG | - | chr1.1:42594383-42594402 | None:intergenic | 30.0% | |
| ATTGTGCAAGACCTAATTAT+TGG | - | chr1.1:42595656-42595675 | None:intergenic | 30.0% | |
| CAAATCATGTGTATATACGT+TGG | + | chr1.1:42593371-42593390 | MS.gene39234:intron | 30.0% | |
| CAAATTCTGAGTATACAAAC+AGG | + | chr1.1:42594236-42594255 | MS.gene39234:intron | 30.0% | |
| CACACATTCAAAATGAAGTT+CGG | + | chr1.1:42592669-42592688 | MS.gene39234:intron | 30.0% | |
| CATTACCTTTAACGACAAAA+GGG | + | chr1.1:42595804-42595823 | MS.gene39234:intron | 30.0% | |
| GATTACTTATGGAAAATCGA+TGG | + | chr1.1:42592935-42592954 | MS.gene39234:CDS | 30.0% | |
| GTGATCAAGAAAAGAGATTA+TGG | - | chr1.1:42594759-42594778 | None:intergenic | 30.0% | |
| TACACATACCTTTCTTAGTA+TGG | - | chr1.1:42595158-42595177 | None:intergenic | 30.0% | |
| TAGGCAATCTGTAAAAGTAA+GGG | - | chr1.1:42594096-42594115 | None:intergenic | 30.0% | |
| TATGAAATGTAGGCCATTAT+AGG | - | chr1.1:42595701-42595720 | None:intergenic | 30.0% | |
| TATGGAGTGAATAAGCAAAT+TGG | + | chr1.1:42595193-42595212 | MS.gene39234:intron | 30.0% | |
| TCAAGAATTGAACCAGAAAT+GGG | + | chr1.1:42592977-42592996 | MS.gene39234:CDS | 30.0% | |
| TCATTACCTTTAACGACAAA+AGG | + | chr1.1:42595803-42595822 | MS.gene39234:intron | 30.0% | |
| TGGGTAAATCTGAAAATAAC+TGG | + | chr1.1:42595386-42595405 | MS.gene39234:intron | 30.0% | |
| TTCAAGAATTGAACCAGAAA+TGG | + | chr1.1:42592976-42592995 | MS.gene39234:CDS | 30.0% | |
| TTTCCGTTTGGTAAAAATGA+GGG | + | chr1.1:42595865-42595884 | MS.gene39234:intron | 30.0% | |
| TTTGATAAATGGGAGTTACA+CGG | + | chr1.1:42595022-42595041 | MS.gene39234:CDS | 30.0% | |
| TTTGTCTGTTAAGTGAAAAG+TGG | + | chr1.1:42594000-42594019 | MS.gene39234:CDS | 30.0% | |
| ! | AAGAATGAAATTTGGGTTTC+AGG | + | chr1.1:42595954-42595973 | MS.gene39234:intron | 30.0% |
| ! | AGGGTTATCTTTTGCATTTT+CGG | - | chr1.1:42593826-42593845 | None:intergenic | 30.0% |
| ! | ATAGTCTGATTTTTGCGAAT+TGG | + | chr1.1:42595243-42595262 | MS.gene39234:intron | 30.0% |
| ! | GTTATATCTGGAGTTATCAT+AGG | - | chr1.1:42592894-42592913 | None:intergenic | 30.0% |
| ! | TCACACAATGGTATATTTTG+TGG | + | chr1.1:42592509-42592528 | MS.gene39234:intron | 30.0% |
| ! | TCTGTTGATGAAAGATATTC+TGG | - | chr1.1:42594525-42594544 | None:intergenic | 30.0% |
| ! | TGATAAGTTTTTCTGATTGC+AGG | + | chr1.1:42592731-42592750 | MS.gene39234:intron | 30.0% |
| ! | TTATTGTTTTCTGTGAACCA+TGG | + | chr1.1:42593088-42593107 | MS.gene39234:intron | 30.0% |
| ! | TTTTCCGTTTGGTAAAAATG+AGG | + | chr1.1:42595864-42595883 | MS.gene39234:intron | 30.0% |
| ! | TTTTTATCTATATCTCCCGA+AGG | + | chr1.1:42594295-42594314 | MS.gene39234:intron | 30.0% |
| !! | ATTGTTTTTCAGAACAACTG+TGG | + | chr1.1:42595444-42595463 | MS.gene39234:intron | 30.0% |
| !! | GGTTTTTAAGAAAACAATGG+AGG | - | chr1.1:42595307-42595326 | None:intergenic | 30.0% |
| !! | TTGTTTTTCAGAACAACTGT+GGG | + | chr1.1:42595445-42595464 | MS.gene39234:intron | 30.0% |
| !!! | TTGTGTAATTTTTTGCCAGT+TGG | + | chr1.1:42593446-42593465 | MS.gene39234:intron | 30.0% |
| AACTCTTGCATAAAGACTCA+TGG | - | chr1.1:42594794-42594813 | None:intergenic | 35.0% | |
| AAGGGATATCAATCATACAG+TGG | - | chr1.1:42594078-42594097 | None:intergenic | 35.0% | |
| AAGGTGTATGGTAACAAACA+GGG | + | chr1.1:42594929-42594948 | MS.gene39234:CDS | 35.0% | |
| ACAGACATGATGGTTATATC+TGG | - | chr1.1:42592906-42592925 | None:intergenic | 35.0% | |
| ACGTAAAAACTGCACAAATG+AGG | - | chr1.1:42594322-42594341 | None:intergenic | 35.0% | |
| AGATATAACCATCATGTCTG+TGG | + | chr1.1:42592905-42592924 | MS.gene39234:CDS | 35.0% | |
| ATCCAAACGGGAAAAAAACA+CGG | + | chr1.1:42595347-42595366 | MS.gene39234:intron | 35.0% | |
| ATTCGGAATAGACATTTCCA+TGG | + | chr1.1:42594670-42594689 | MS.gene39234:intron | 35.0% | |
| CACAGATAAGTTCGGATATA+TGG | + | chr1.1:42594990-42595009 | MS.gene39234:CDS | 35.0% | |
| CTCAGTTGTTTGTAGAGTAA+AGG | - | chr1.1:42592861-42592880 | None:intergenic | 35.0% | |
| CTTTACTCTACAAACAACTG+AGG | + | chr1.1:42592859-42592878 | MS.gene39234:CDS | 35.0% | |
| GATATAACCATCATGTCTGT+GGG | + | chr1.1:42592906-42592925 | MS.gene39234:CDS | 35.0% | |
| GCTGGTGAAGTTTGATAAAT+GGG | + | chr1.1:42595012-42595031 | MS.gene39234:CDS | 35.0% | |
| GCTGTTTATTGCTGCTATAA+AGG | + | chr1.1:42594049-42594068 | MS.gene39234:CDS | 35.0% | |
| GGTATTCACTGTGATTTGAT+TGG | + | chr1.1:42593065-42593084 | MS.gene39234:intron | 35.0% | |
| GTTCGAGAGATATAAAAGAG+GGG | - | chr1.1:42595091-42595110 | None:intergenic | 35.0% | |
| TCAAGAAAAGAGATTATGGC+AGG | - | chr1.1:42594755-42594774 | None:intergenic | 35.0% | |
| TGTCACTACCATACTAAGAA+AGG | + | chr1.1:42595147-42595166 | MS.gene39234:CDS | 35.0% | |
| TTCGAGAGATATAAAAGAGG+GGG | - | chr1.1:42595090-42595109 | None:intergenic | 35.0% | |
| TTCGGAATAGACATTTCCAT+GGG | + | chr1.1:42594671-42594690 | MS.gene39234:intron | 35.0% | |
| TTTAATATGCAGGATCCATC+TGG | + | chr1.1:42594845-42594864 | MS.gene39234:intron | 35.0% | |
| ! | AAAGGTGTATGGTAACAAAC+AGG | + | chr1.1:42594928-42594947 | MS.gene39234:CDS | 35.0% |
| ! | AATGTCTGAAACATCTCTTG+GGG | - | chr1.1:42593928-42593947 | None:intergenic | 35.0% |
| ! | ATAACTGGTGTTTTTCTGTC+TGG | + | chr1.1:42595401-42595420 | MS.gene39234:intron | 35.0% |
| ! | ATACATTGGTCACTTTGCTT+TGG | + | chr1.1:42594421-42594440 | MS.gene39234:intron | 35.0% |
| ! | ATAGTCCCTTTTGTCGTTAA+AGG | - | chr1.1:42595812-42595831 | None:intergenic | 35.0% |
| ! | CAATGTCTGAAACATCTCTT+GGG | - | chr1.1:42593929-42593948 | None:intergenic | 35.0% |
| ! | CTTAAAAAGTTTGAGACCGA+GGG | + | chr1.1:42593552-42593571 | MS.gene39234:CDS | 35.0% |
| ! | GAAACAGTTTAGGATATGGT+TGG | + | chr1.1:42594952-42594971 | MS.gene39234:CDS | 35.0% |
| ! | TCGTGAATGTATTTTCCGTT+TGG | + | chr1.1:42595853-42595872 | MS.gene39234:intron | 35.0% |
| !! | AGTCCCTCATTTTTACCAAA+CGG | - | chr1.1:42595871-42595890 | None:intergenic | 35.0% |
| !! | TGCATCTGTTTCTGTTCATT+GGG | + | chr1.1:42593760-42593779 | MS.gene39234:intron | 35.0% |
| !!! | AGAGGCTCTTTCTAAGATTT+TGG | + | chr1.1:42593289-42593308 | MS.gene39234:CDS | 35.0% |
| !!! | AGCCATAGGTCATTTTAACT+TGG | + | chr1.1:42593890-42593909 | MS.gene39234:CDS | 35.0% |
| !!! | GCCATAGGTCATTTTAACTT+GGG | + | chr1.1:42593891-42593910 | MS.gene39234:CDS | 35.0% |
| !!! | TGTTTTTTTCCCGTTTGGAT+GGG | - | chr1.1:42595347-42595366 | None:intergenic | 35.0% |
| AATGATGTGGGACTAACATG+GGG | - | chr1.1:42595575-42595594 | None:intergenic | 40.0% | |
| ACAAACAGGGGAAACAGTTT+AGG | + | chr1.1:42594942-42594961 | MS.gene39234:CDS | 40.0% | |
| AGGTGTATGGTAACAAACAG+GGG | + | chr1.1:42594930-42594949 | MS.gene39234:CDS | 40.0% | |
| AGTCTCTAGTAAGCTAGCAT+TGG | + | chr1.1:42595729-42595748 | MS.gene39234:intron | 40.0% | |
| ATAGACTCAAATCTTCTGCG+CGG | + | chr1.1:42592463-42592482 | MS.gene39234:CDS | 40.0% | |
| ATTGAACCAGAAATGGGACA+AGG | + | chr1.1:42592983-42593002 | MS.gene39234:CDS | 40.0% | |
| CAACAATGGCTTCAATCAAG+TGG | + | chr1.1:42593165-42593184 | MS.gene39234:intron | 40.0% | |
| CAATGATGTGGGACTAACAT+GGG | - | chr1.1:42595576-42595595 | None:intergenic | 40.0% | |
| CCAAGAGATGTTTCAGACAT+TGG | + | chr1.1:42593927-42593946 | MS.gene39234:CDS | 40.0% | |
| GAAAAGAGATTATGGCAGGA+AGG | - | chr1.1:42594751-42594770 | None:intergenic | 40.0% | |
| GACATGGACATATTACCACA+AGG | + | chr1.1:42593498-42593517 | MS.gene39234:CDS | 40.0% | |
| GATAAGTTCGGATATATGGC+TGG | + | chr1.1:42594994-42595013 | MS.gene39234:CDS | 40.0% | |
| GATATGGTTGGACAATGTGT+TGG | + | chr1.1:42594964-42594983 | MS.gene39234:CDS | 40.0% | |
| GCCCAAGTTAAAATGACCTA+TGG | - | chr1.1:42593895-42593914 | None:intergenic | 40.0% | |
| GGACTACATTTCAAATACGC+AGG | - | chr1.1:42594147-42594166 | None:intergenic | 40.0% | |
| GGCTGGTGAAGTTTGATAAA+TGG | + | chr1.1:42595011-42595030 | MS.gene39234:CDS | 40.0% | |
| GTCCTCAAAATTGTTAGCGT+AGG | + | chr1.1:42595215-42595234 | MS.gene39234:intron | 40.0% | |
| GTGGGAACTGAGATTACTTA+TGG | + | chr1.1:42592924-42592943 | MS.gene39234:CDS | 40.0% | |
| GTGTGTGTGATAACACATGT+TGG | - | chr1.1:42592654-42592673 | None:intergenic | 40.0% | |
| GTTGGCTACACAGATAAGTT+CGG | + | chr1.1:42594982-42595001 | MS.gene39234:CDS | 40.0% | |
| TACCATTGTGTGATCGAGAT+CGG | - | chr1.1:42592502-42592521 | None:intergenic | 40.0% | |
| TATCACTAGGGACTATGATG+TGG | + | chr1.1:42595526-42595545 | MS.gene39234:intron | 40.0% | |
| TCGTGAACTTGTGATTTGAG+TGG | + | chr1.1:42592707-42592726 | MS.gene39234:intron | 40.0% | |
| TTCAGCATTCCAGGAGTTTA+TGG | + | chr1.1:42593630-42593649 | MS.gene39234:CDS | 40.0% | |
| TTCTTGAACCCATCCATCAT+CGG | - | chr1.1:42592964-42592983 | None:intergenic | 40.0% | |
| ! | AAACACGGCTTTTCTAACGT+TGG | + | chr1.1:42595362-42595381 | MS.gene39234:intron | 40.0% |
| ! | AGGGGAAACAGTTTAGGATA+TGG | + | chr1.1:42594948-42594967 | MS.gene39234:CDS | 40.0% |
| ! | ATACCTACTCAAAGTACCTG+AGG | - | chr1.1:42593050-42593069 | None:intergenic | 40.0% |
| ! | CCAATGTCTGAAACATCTCT+TGG | - | chr1.1:42593930-42593949 | None:intergenic | 40.0% |
| ! | CCACAAACTAGAGTATTACC+AGG | - | chr1.1:42593585-42593604 | None:intergenic | 40.0% |
| ! | CCTGGTAATACTCTAGTTTG+TGG | + | chr1.1:42593582-42593601 | MS.gene39234:CDS | 40.0% |
| ! | GACCTACGCTAACAATTTTG+AGG | - | chr1.1:42595220-42595239 | None:intergenic | 40.0% |
| ! | GCTTAAAAAGTTTGAGACCG+AGG | + | chr1.1:42593551-42593570 | MS.gene39234:CDS | 40.0% |
| ! | TCTGGGATTATACAAGCCAT+AGG | + | chr1.1:42593876-42593895 | MS.gene39234:CDS | 40.0% |
| ! | TTTGAGGTTCAATGCCCTTT+GGG | + | chr1.1:42592785-42592804 | MS.gene39234:CDS | 40.0% |
| ! | TTTTCAGAACAACTGTGGGT+GGG | + | chr1.1:42595449-42595468 | MS.gene39234:intron | 40.0% |
| ! | TTTTCTGTGAACCATGGATC+AGG | + | chr1.1:42593094-42593113 | MS.gene39234:intron | 40.0% |
| ! | TTTTGAATGATCGGTACTGC+AGG | + | chr1.1:42593199-42593218 | MS.gene39234:intron | 40.0% |
| !! | AATGAAGTTCGGTGTTACAG+TGG | + | chr1.1:42592680-42592699 | MS.gene39234:intron | 40.0% |
| !! | CAGAGAATAGTTCGCTTTTG+AGG | + | chr1.1:42592769-42592788 | MS.gene39234:CDS | 40.0% |
| !! | CTGCATCTGTTTCTGTTCAT+TGG | + | chr1.1:42593759-42593778 | MS.gene39234:intron | 40.0% |
| !! | TCTGTTTCTGTTCATTGGGT+AGG | + | chr1.1:42593764-42593783 | MS.gene39234:intron | 40.0% |
| !! | TGGTGCTGACTATTCTCTTA+AGG | + | chr1.1:42594886-42594905 | MS.gene39234:CDS | 40.0% |
| !! | TTTTTCAGAACAACTGTGGG+TGG | + | chr1.1:42595448-42595467 | MS.gene39234:intron | 40.0% |
| !!! | GTGTTTTTTTCCCGTTTGGA+TGG | - | chr1.1:42595348-42595367 | None:intergenic | 40.0% |
| !!! | TCTAAGATTTTGGAACAGCG+CGG | + | chr1.1:42593299-42593318 | MS.gene39234:CDS | 40.0% |
| !!! | TTTTGAGGTTCAATGCCCTT+TGG | + | chr1.1:42592784-42592803 | MS.gene39234:CDS | 40.0% |
| AAATCGATGGTTCCCGATGA+TGG | + | chr1.1:42592948-42592967 | MS.gene39234:CDS | 45.0% | |
| AAGCCTCAGGTACTTTGAGT+AGG | + | chr1.1:42593044-42593063 | MS.gene39234:intron | 45.0% | |
| ACCATGACACCATAAACTCC+TGG | - | chr1.1:42593642-42593661 | None:intergenic | 45.0% | |
| ACGTGCAGAAGTTGAGAACT+CGG | + | chr1.1:42594025-42594044 | MS.gene39234:CDS | 45.0% | |
| ACTGCACAAATGAGGTCCTT+CGG | - | chr1.1:42594314-42594333 | None:intergenic | 45.0% | |
| ACTTTAGTGCAGTTCACCCA+TGG | - | chr1.1:42594690-42594709 | None:intergenic | 45.0% | |
| AGAACACCAGCAAAGAATCG+TGG | - | chr1.1:42592824-42592843 | None:intergenic | 45.0% | |
| AGAGAATAGTCAGCACCAGA+AGG | - | chr1.1:42594884-42594903 | None:intergenic | 45.0% | |
| AGGCAAACCAGTCTCTAGTA+TGG | - | chr1.1:42595609-42595628 | None:intergenic | 45.0% | |
| AGTACCTGAGGCTTAAGTTC+AGG | - | chr1.1:42593038-42593057 | None:intergenic | 45.0% | |
| ATATCGCCACGATTCTTTGC+TGG | + | chr1.1:42592815-42592834 | MS.gene39234:CDS | 45.0% | |
| ATGATGTGGGACTAACATGG+GGG | - | chr1.1:42595574-42595593 | None:intergenic | 45.0% | |
| ATGCATCCAGGTGAACCAAT+CGG | - | chr1.1:42595983-42596002 | None:intergenic | 45.0% | |
| ATTACCAGGTAGCTTTCCCT+CGG | - | chr1.1:42593571-42593590 | None:intergenic | 45.0% | |
| CAAACCAGTCTCTAGTATGG+TGG | - | chr1.1:42595606-42595625 | None:intergenic | 45.0% | |
| CAATGCTAAGCAAGTGACAG+AGG | + | chr1.1:42593271-42593290 | MS.gene39234:CDS | 45.0% | |
| CAATGTCCTTGTCCCATTTC+TGG | - | chr1.1:42592992-42593011 | None:intergenic | 45.0% | |
| CAGATTGTTCCAACCATGAC+TGG | - | chr1.1:42596011-42596030 | None:intergenic | 45.0% | |
| CCACTGCAGTAATTCCTCTT+GGG | - | chr1.1:42593799-42593818 | None:intergenic | 45.0% | |
| CTGAGGCATGCAGAATCTTA+GGG | - | chr1.1:42593845-42593864 | None:intergenic | 45.0% | |
| GAATAGCTCGGCATCATTTC+CGG | - | chr1.1:42593613-42593632 | None:intergenic | 45.0% | |
| GACATATTACCACAAGGTGC+TGG | + | chr1.1:42593504-42593523 | MS.gene39234:CDS | 45.0% | |
| GAGAATAGTCAGCACCAGAA+GGG | - | chr1.1:42594883-42594902 | None:intergenic | 45.0% | |
| GCAATGATGTGGGACTAACA+TGG | - | chr1.1:42595577-42595596 | None:intergenic | 45.0% | |
| GCGAACTATTCTCTGCATCA+TGG | - | chr1.1:42592764-42592783 | None:intergenic | 45.0% | |
| GCGATATGAAGCTTCCCAAA+GGG | - | chr1.1:42592802-42592821 | None:intergenic | 45.0% | |
| GGACAAGGACATTGTCATTG+AGG | + | chr1.1:42592998-42593017 | MS.gene39234:CDS | 45.0% | |
| GTCTCTAGTATGGTGGCAAA+TGG | - | chr1.1:42595599-42595618 | None:intergenic | 45.0% | |
| GTGGCAAATGGCAATGATGT+GGG | - | chr1.1:42595587-42595606 | None:intergenic | 45.0% | |
| GTTTCCTGAACTTAAGCCTC+AGG | + | chr1.1:42593031-42593050 | MS.gene39234:CDS | 45.0% | |
| TCCGGATTTACCCATCCAAA+CGG | + | chr1.1:42595334-42595353 | MS.gene39234:intron | 45.0% | |
| TCCTGGAATGCTGAATAGCT+CGG | - | chr1.1:42593625-42593644 | None:intergenic | 45.0% | |
| TCTTAAAAACCACACCCCTC+CGG | + | chr1.1:42595316-42595335 | MS.gene39234:intron | 45.0% | |
| TCTTGAACCCATCCATCATC+GGG | - | chr1.1:42592963-42592982 | None:intergenic | 45.0% | |
| TCTTTGCTGGTGTTCTCAAC+TGG | + | chr1.1:42592828-42592847 | MS.gene39234:CDS | 45.0% | |
| TGCAGGCAGAAACAGAACAA+CGG | + | chr1.1:42593216-42593235 | MS.gene39234:intron | 45.0% | |
| TGGAACAATCTGACCATGAG+TGG | + | chr1.1:42596019-42596038 | MS.gene39234:CDS | 45.0% | |
| TTCCGATCTCGATCACACAA+TGG | + | chr1.1:42592497-42592516 | MS.gene39234:CDS | 45.0% | |
| TTGGGTTTCAGGATTCCGAT+TGG | + | chr1.1:42595965-42595984 | MS.gene39234:intron | 45.0% | |
| TTTGCCACCATACTAGAGAC+TGG | + | chr1.1:42595599-42595618 | MS.gene39234:intron | 45.0% | |
| TTTGGATGGGTAAATCCGGA+GGG | - | chr1.1:42595334-42595353 | None:intergenic | 45.0% | |
| ! | ACGGCTTTTCTAACGTTGGA+TGG | + | chr1.1:42595366-42595385 | MS.gene39234:intron | 45.0% |
| ! | ACTCTAGTTTGTGGTGACTC+CGG | + | chr1.1:42593591-42593610 | MS.gene39234:CDS | 45.0% |
| ! | ATATAGCGGAGGAGTTGACA+TGG | + | chr1.1:42593482-42593501 | MS.gene39234:CDS | 45.0% |
| ! | CGGCTTTTCTAACGTTGGAT+GGG | + | chr1.1:42595367-42595386 | MS.gene39234:intron | 45.0% |
| ! | TCCAGGAGTTTATGGTGTCA+TGG | + | chr1.1:42593638-42593657 | MS.gene39234:CDS | 45.0% |
| ! | TCTGAGGCATGCAGAATCTT+AGG | - | chr1.1:42593846-42593865 | None:intergenic | 45.0% |
| ! | TGGTGTTTTTCTGTCTGGAC+TGG | + | chr1.1:42595406-42595425 | MS.gene39234:intron | 45.0% |
| !! | GGAGTTTATGGTGTCATGGT+TGG | + | chr1.1:42593642-42593661 | MS.gene39234:intron | 45.0% |
| !!! | AGCCGTGTTTTTTTCCCGTT+TGG | - | chr1.1:42595352-42595371 | None:intergenic | 45.0% |
| !!! | CTAAGATTTTGGAACAGCGC+GGG | + | chr1.1:42593300-42593319 | MS.gene39234:CDS | 45.0% |
| !!! | TAAGATTTTGGAACAGCGCG+GGG | + | chr1.1:42593301-42593320 | MS.gene39234:CDS | 45.0% |
| AATAGTCAGCACCAGAAGGG+TGG | - | chr1.1:42594880-42594899 | None:intergenic | 50.0% | |
| ACATCTCTTGGGGACAGGTT+TGG | - | chr1.1:42593918-42593937 | None:intergenic | 50.0% | |
| CATCTCTTGGGGACAGGTTT+GGG | - | chr1.1:42593917-42593936 | None:intergenic | 50.0% | |
| CCCAAGAGGAATTACTGCAG+TGG | + | chr1.1:42593796-42593815 | MS.gene39234:CDS | 50.0% | |
| CCCGTTTGGATGGGTAAATC+CGG | - | chr1.1:42595338-42595357 | None:intergenic | 50.0% | |
| CCGGATTTACCCATCCAAAC+GGG | + | chr1.1:42595335-42595354 | MS.gene39234:intron | 50.0% | |
| CTCAGTTCCCACAGACATGA+TGG | - | chr1.1:42592916-42592935 | None:intergenic | 50.0% | |
| CTGAAACATCTCTTGGGGAC+AGG | - | chr1.1:42593923-42593942 | None:intergenic | 50.0% | |
| CTGCACAAATGAGGTCCTTC+GGG | - | chr1.1:42594313-42594332 | None:intergenic | 50.0% | |
| GCAGGCAGAAACAGAACAAC+GGG | + | chr1.1:42593217-42593236 | MS.gene39234:intron | 50.0% | |
| GCCAACTTGCAGATGAAGAG+CGG | + | chr1.1:42595113-42595132 | MS.gene39234:intron | 50.0% | |
| GCCACTGCAGTAATTCCTCT+TGG | - | chr1.1:42593800-42593819 | None:intergenic | 50.0% | |
| GGCGATATGAAGCTTCCCAA+AGG | - | chr1.1:42592803-42592822 | None:intergenic | 50.0% | |
| GGGTGGATATACACACCAGA+TGG | - | chr1.1:42594863-42594882 | None:intergenic | 50.0% | |
| GGTGGCAAATGGCAATGATG+TGG | - | chr1.1:42595588-42595607 | None:intergenic | 50.0% | |
| GGTGTGTATATCCACCCTTC+TGG | + | chr1.1:42594866-42594885 | MS.gene39234:CDS | 50.0% | |
| GTGTCTGTGTCAGTGCTTCA+TGG | - | chr1.1:42592603-42592622 | None:intergenic | 50.0% | |
| GTTTGGATGGGTAAATCCGG+AGG | - | chr1.1:42595335-42595354 | None:intergenic | 50.0% | |
| TGTCAACGTGTCAGTGTGTC+TGG | - | chr1.1:42592631-42592650 | None:intergenic | 50.0% | |
| TTGGATGGGTAAATCCGGAG+GGG | - | chr1.1:42595333-42595352 | None:intergenic | 50.0% | |
| ! | AGGATTCCGATTGGTTCACC+TGG | + | chr1.1:42595974-42595993 | MS.gene39234:intron | 50.0% |
| !! | GATGGTTCCCGATGATGGAT+GGG | + | chr1.1:42592953-42592972 | MS.gene39234:CDS | 50.0% |
| !! | TCTGTCTGGACTGGTAGACT+CGG | + | chr1.1:42595415-42595434 | MS.gene39234:intron | 50.0% |
| !! | TTACCACAAGGTGCTGGCAA+AGG | + | chr1.1:42593510-42593529 | MS.gene39234:CDS | 50.0% |
| CTTGCAGATGAAGAGCGGCA+TGG | + | chr1.1:42595118-42595137 | MS.gene39234:intron | 55.0% | |
| GCATGTGCACCAGTCATGGT+TGG | + | chr1.1:42595999-42596018 | MS.gene39234:CDS | 55.0% | |
| GCCGAGCTATTCAGCATTCC+AGG | + | chr1.1:42593621-42593640 | MS.gene39234:CDS | 55.0% | |
| GCCGCTCTTCATCTGCAAGT+TGG | - | chr1.1:42595117-42595136 | None:intergenic | 55.0% | |
| GCTAGCGAGTTCCTGATCCA+TGG | - | chr1.1:42593108-42593127 | None:intergenic | 55.0% | |
| GGATGCATGTGCACCAGTCA+TGG | + | chr1.1:42595995-42596014 | MS.gene39234:CDS | 55.0% | |
| GTAGGTAAGCAACGCCCAAG+AGG | + | chr1.1:42593782-42593801 | MS.gene39234:intron | 55.0% | |
| TGACCTTTGCCAGCACCTTG+TGG | - | chr1.1:42593516-42593535 | None:intergenic | 55.0% | |
| TGACTGGTGCACATGCATCC+AGG | - | chr1.1:42595995-42596014 | None:intergenic | 55.0% | |
| TGCTGGTGTTCTCAACTGGC+AGG | + | chr1.1:42592832-42592851 | MS.gene39234:CDS | 55.0% | |
| !! | CCTCAGAGCGTTGTGCATCT+GGG | + | chr1.1:42593859-42593878 | MS.gene39234:CDS | 55.0% |
| !! | CGATGGTTCCCGATGATGGA+TGG | + | chr1.1:42592952-42592971 | MS.gene39234:CDS | 55.0% |
| CCCAGATGCACAACGCTCTG+AGG | - | chr1.1:42593862-42593881 | None:intergenic | 60.0% | |
| GAGACCGAGGGAAAGCTACC+TGG | + | chr1.1:42593564-42593583 | MS.gene39234:CDS | 60.0% | |
| TGGGTAAATCCGGAGGGGTG+TGG | - | chr1.1:42595328-42595347 | None:intergenic | 60.0% | |
| !! | CTGGACTGGTAGACTCGGAC+AGG | + | chr1.1:42595420-42595439 | MS.gene39234:intron | 60.0% |
| !! | GCCTCAGAGCGTTGTGCATC+TGG | + | chr1.1:42593858-42593877 | MS.gene39234:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42592459 | 42596050 | 42592459 | ID=MS.gene39234 |
| chr1.1 | mRNA | 42592459 | 42596050 | 42592459 | ID=MS.gene39234.t1;Parent=MS.gene39234 |
| chr1.1 | exon | 42592459 | 42592518 | 42592459 | ID=MS.gene39234.t1.exon1;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42592459 | 42592518 | 42592459 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42592753 | 42593052 | 42592753 | ID=MS.gene39234.t1.exon2;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42592753 | 42593052 | 42592753 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42593221 | 42593322 | 42593221 | ID=MS.gene39234.t1.exon3;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42593221 | 42593322 | 42593221 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42593465 | 42593659 | 42593465 | ID=MS.gene39234.t1.exon4;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42593465 | 42593659 | 42593465 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42593786 | 42594079 | 42593786 | ID=MS.gene39234.t1.exon5;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42593786 | 42594079 | 42593786 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42594857 | 42595043 | 42594857 | ID=MS.gene39234.t1.exon6;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42594857 | 42595043 | 42594857 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42595125 | 42595168 | 42595125 | ID=MS.gene39234.t1.exon7;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42595125 | 42595168 | 42595125 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| chr1.1 | exon | 42595976 | 42596050 | 42595976 | ID=MS.gene39234.t1.exon8;Parent=MS.gene39234.t1 |
| chr1.1 | CDS | 42595976 | 42596050 | 42595976 | ID=cds.MS.gene39234.t1;Parent=MS.gene39234.t1 |
| Gene Sequence |
| Protein sequence |
