Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39331.t1 | XP_013443975.1 | 98.4 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 3.20E-249 | 870.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39331.t1 | A0A072TKP9 | 98.4 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 2.3e-249 | 870.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39331 | MS.gene063341 | PPI |
| MS.gene39331 | MS.gene66390 | PPI |
| MS.gene39331 | MS.gene75022 | PPI |
| MS.gene030339 | MS.gene39331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39331.t1 | MTR_8g009770 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 871 |
| MS.gene39331.t1 | MTR_3g110630 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 4.25e-91 | 283 |
| MS.gene39331.t1 | MTR_6g090060 | 38.636 | 440 | 229 | 11 | 1 | 427 | 1 | 412 | 3.57e-85 | 267 |
| MS.gene39331.t1 | MTR_5g005420 | 36.283 | 452 | 230 | 12 | 1 | 430 | 1 | 416 | 4.66e-79 | 251 |
| MS.gene39331.t1 | MTR_8g102270 | 39.763 | 337 | 162 | 10 | 95 | 427 | 53 | 352 | 6.29e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39331.t1 | AT5G17640 | 73.113 | 424 | 104 | 6 | 1 | 420 | 1 | 418 | 0.0 | 598 |
| MS.gene39331.t1 | AT1G10020 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 1.11e-90 | 282 |
| MS.gene39331.t1 | AT4G29310 | 39.863 | 439 | 226 | 10 | 1 | 427 | 1 | 413 | 5.63e-90 | 279 |
| MS.gene39331.t1 | AT3G19680 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 1.05e-73 | 239 |
| MS.gene39331.t1 | AT1G50040 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.50e-67 | 222 |
| MS.gene39331.t1 | AT4G29310 | 38.806 | 335 | 182 | 8 | 1 | 323 | 1 | 324 | 2.59e-61 | 202 |
Find 119 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCCTTCACCCCATTC+AGG | 0.245825 | 8.2:+81299357 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8.2:-81297970 | MS.gene39331:CDS |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8.2:-81297980 | MS.gene39331:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8.2:-81299731 | MS.gene39331:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8.2:-81299712 | MS.gene39331:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 8.2:+81297670 | None:intergenic |
| GAACTGAACACTGGAAAATC+TGG | 0.342355 | 8.2:-81299669 | MS.gene39331:CDS |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8.2:-81299469 | MS.gene39331:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8.2:-81299413 | MS.gene39331:CDS |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 8.2:+81299156 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 8.2:+81297889 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 8.2:-81299151 | MS.gene39331:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8.2:+81299719 | None:intergenic |
| CGCAATGCCAGCTGTACTAA+TGG | 0.400497 | 8.2:+81297578 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.402802 | 8.2:-81297620 | MS.gene39331:CDS |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 8.2:+81297669 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 8.2:+81297683 | None:intergenic |
| TTTAACGGATGGACAGGTAT+TGG | 0.405863 | 8.2:-81299324 | MS.gene39331:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 8.2:+81297677 | None:intergenic |
| CGGGGAGGAGAGAGAGAAAA+GGG | 0.413961 | 8.2:-81298060 | MS.gene39331:CDS |
| TCGGGGAGGAGAGAGAGAAA+AGG | 0.415178 | 8.2:-81298061 | MS.gene39331:CDS |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8.2:-81297765 | MS.gene39331:CDS |
| GACATTTCTGACTTAGAATC+GGG | 0.427448 | 8.2:-81298079 | MS.gene39331:CDS |
| ACCCTCTTCTGATCTTCCTT+CGG | 0.427964 | 8.2:+81297471 | None:intergenic |
| TGACATTTCTGACTTAGAAT+CGG | 0.431555 | 8.2:-81298080 | MS.gene39331:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8.2:-81299371 | MS.gene39331:CDS |
| GGAAGATCAGAAGAGGGTTT+CGG | 0.438177 | 8.2:-81297466 | MS.gene39331:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 8.2:-81298031 | MS.gene39331:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8.2:+81297977 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8.2:+81299440 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 8.2:-81297711 | MS.gene39331:CDS |
| ATGACAAAACCTCCAACAAC+CGG | 0.455042 | 8.2:+81297638 | None:intergenic |
| GGAGGATGCTGCCATCTTCA+TGG | 0.456755 | 8.2:-81297540 | MS.gene39331:CDS |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8.2:+81297932 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 8.2:-81297657 | MS.gene39331:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 8.2:-81299498 | MS.gene39331:CDS |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8.2:-81297969 | MS.gene39331:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 8.2:+81299594 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8.2:-81297650 | MS.gene39331:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8.2:+81299725 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8.2:+81299724 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481666 | 8.2:+81299358 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 8.2:-81297671 | MS.gene39331:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 8.2:-81297892 | MS.gene39331:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 8.2:+81299572 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8.2:+81297802 | None:intergenic |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 8.2:-81298053 | MS.gene39331:CDS |
| TGGCAAGCCATTAGTACAGC+TGG | 0.494897 | 8.2:-81297585 | MS.gene39331:CDS |
| CTTCTGATCTTCCTTCGGAA+AGG | 0.500164 | 8.2:+81297476 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8.2:-81298110 | MS.gene39331:CDS |
| TGCCGCAAGTGCCATGAAGA+TGG | 0.500784 | 8.2:+81297529 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8.2:-81299363 | MS.gene39331:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8.2:-81299423 | MS.gene39331:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 8.2:+81297908 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8.2:-81297943 | MS.gene39331:CDS |
| AGGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8.2:-81299310 | MS.gene39331:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8.2:+81297813 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8.2:-81299146 | MS.gene39331:intron |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8.2:-81297764 | MS.gene39331:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8.2:-81299370 | MS.gene39331:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8.2:+81297968 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8.2:-81299720 | MS.gene39331:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8.2:-81299621 | MS.gene39331:CDS |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8.2:-81299696 | MS.gene39331:CDS |
| AAACAGGAGAACGGAAAACC+AGG | 0.532501 | 8.2:-81299294 | MS.gene39331:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 8.2:-81297863 | MS.gene39331:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 8.2:-81297891 | MS.gene39331:CDS |
| TTCAAATGCAATTCAGCACC+TGG | 0.538421 | 8.2:+81299276 | None:intergenic |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8.2:-81299402 | MS.gene39331:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8.2:-81299711 | MS.gene39331:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8.2:-81299362 | MS.gene39331:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8.2:-81298114 | MS.gene39331:CDS |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8.2:-81297809 | MS.gene39331:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8.2:-81298109 | MS.gene39331:CDS |
| TGACAAGTATATGGATCCCC+AGG | 0.561569 | 8.2:-81299742 | None:intergenic |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8.2:+81297797 | None:intergenic |
| GATTCTAAGTCAGAAATGTC+AGG | 0.563508 | 8.2:+81298082 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8.2:+81297937 | None:intergenic |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.566007 | 8.2:-81298057 | MS.gene39331:CDS |
| TGCCATCTTCATGGCACTTG+CGG | 0.566182 | 8.2:-81297531 | MS.gene39331:CDS |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8.2:-81297614 | MS.gene39331:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.582970 | 8.2:-81297647 | MS.gene39331:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 8.2:-81297901 | MS.gene39331:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8.2:+81297875 | None:intergenic |
| ACTGGAATTGAACTGAACAC+TGG | 0.594978 | 8.2:-81299678 | MS.gene39331:CDS |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8.2:-81297874 | MS.gene39331:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 8.2:+81299563 | None:intergenic |
| GGCAAGAACAAACAGGAGAA+CGG | 0.605160 | 8.2:-81299303 | MS.gene39331:CDS |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8.2:-81297761 | MS.gene39331:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8.2:+81297933 | None:intergenic |
| TTCCGAAGGAAGATCAGAAG+AGG | 0.608044 | 8.2:-81297473 | MS.gene39331:CDS |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 8.2:+81299557 | None:intergenic |
| TCCGAAGGAAGATCAGAAGA+GGG | 0.612207 | 8.2:-81297472 | MS.gene39331:CDS |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8.2:-81297917 | MS.gene39331:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8.2:+81297991 | None:intergenic |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8.2:+81297498 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8.2:-81297507 | MS.gene39331:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 8.2:+81299573 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8.2:-81299192 | MS.gene39331:CDS |
| AGGCATGCAAGCCTTTCCGA+AGG | 0.638060 | 8.2:-81297487 | MS.gene39331:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 8.2:+81297907 | None:intergenic |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8.2:-81299429 | MS.gene39331:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 8.2:+81297671 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8.2:+81299192 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8.2:-81297921 | MS.gene39331:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8.2:-81297806 | MS.gene39331:CDS |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 8.2:-81297680 | MS.gene39331:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 8.2:-81297890 | MS.gene39331:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 8.2:+81299462 | None:intergenic |
| ATTGCGACACGTGACGTGTG+TGG | 0.677610 | 8.2:-81297561 | MS.gene39331:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8.2:-81299369 | MS.gene39331:CDS |
| TTTCTGACTTAGAATCGGGG+AGG | 0.692661 | 8.2:-81298075 | MS.gene39331:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.694457 | 8.2:-81297605 | MS.gene39331:CDS |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8.2:+81299480 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8.2:-81297950 | MS.gene39331:CDS |
| ACATTTCTGACTTAGAATCG+GGG | 0.708791 | 8.2:-81298078 | MS.gene39331:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 8.2:+81299574 | None:intergenic |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8.2:+81299726 | None:intergenic |
| GCGACACGTGACGTGTGTGG+AGG | 0.734528 | 8.2:-81297558 | MS.gene39331:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACTGATTTTTCTTTT+AGG | + | chr8.2:81298871-81298890 | None:intergenic | 15.0% |
| !!! | AAAAACTGATTTTTCTTTTA+GGG | + | chr8.2:81298870-81298889 | None:intergenic | 15.0% |
| !!! | TAAAAGTACAAACTTTATTT+TGG | - | chr8.2:81298726-81298745 | MS.gene39331:intron | 15.0% |
| !!! | TTTTGCAACAAAAAAAAAAA+TGG | - | chr8.2:81298322-81298341 | MS.gene39331:intron | 15.0% |
| !! | AATACACGATAAAGTTAATT+TGG | - | chr8.2:81298522-81298541 | MS.gene39331:intron | 20.0% |
| !!! | AAAGTGACTAATTTTATAGT+AGG | + | chr8.2:81298278-81298297 | None:intergenic | 20.0% |
| !!! | AAGTGACTAATTTTATAGTA+GGG | + | chr8.2:81298277-81298296 | None:intergenic | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | - | chr8.2:81299040-81299059 | MS.gene39331:intron | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | - | chr8.2:81299039-81299058 | MS.gene39331:intron | 20.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | - | chr8.2:81299421-81299440 | MS.gene39331:CDS | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | - | chr8.2:81299422-81299441 | MS.gene39331:CDS | 25.0% |
| ! | GTCTTCTCTATTAAAAGAAA+GGG | - | chr8.2:81298664-81298683 | MS.gene39331:intron | 25.0% |
| ! | TGTCTTCTCTATTAAAAGAA+AGG | - | chr8.2:81298663-81298682 | MS.gene39331:intron | 25.0% |
| !! | AAACCTGTGATTCTTTTTAA+CGG | - | chr8.2:81297847-81297866 | MS.gene39331:CDS | 25.0% |
| !! | ATTTTATAGTAGGGATGATA+AGG | + | chr8.2:81298268-81298287 | None:intergenic | 25.0% |
| !! | CATGCATTTTATCAACATTT+TGG | + | chr8.2:81298989-81299008 | None:intergenic | 25.0% |
| AAAAAATAACTGTCTCCGAA+TGG | - | chr8.2:81298380-81298399 | MS.gene39331:intron | 30.0% | |
| AAAACTTCTGCTCTATATCA+AGG | + | chr8.2:81298898-81298917 | None:intergenic | 30.0% | |
| AACAAATGGAGTTGTTATGA+AGG | + | chr8.2:81299198-81299217 | None:intergenic | 30.0% | |
| AATTGAAATTGACAGCCATT+CGG | + | chr8.2:81298398-81298417 | None:intergenic | 30.0% | |
| TCAAACCGAAAAACATATCT+AGG | + | chr8.2:81297955-81297974 | None:intergenic | 30.0% | |
| TCACTTTGCACTTATGATAA+TGG | - | chr8.2:81298497-81298516 | MS.gene39331:intron | 30.0% | |
| TGACATTTCTGACTTAGAAT+CGG | - | chr8.2:81299106-81299125 | MS.gene39331:intron | 30.0% | |
| TGCACATAGTATTAGTTAGA+TGG | + | chr8.2:81298456-81298475 | None:intergenic | 30.0% | |
| ! | CTAAACTTGCTTCATGATAT+AGG | - | chr8.2:81298233-81298252 | MS.gene39331:intron | 30.0% |
| ! | CTGATCCTAGATATGTTTTT+CGG | - | chr8.2:81297947-81297966 | MS.gene39331:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | + | chr8.2:81297675-81297694 | None:intergenic | 30.0% |
| ! | TGGTTATTTCACACAAACTA+AGG | + | chr8.2:81298585-81298604 | None:intergenic | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | - | chr8.2:81297801-81297820 | MS.gene39331:CDS | 30.0% |
| AAATGCTAACAAGTGACCTT+AGG | - | chr8.2:81298687-81298706 | MS.gene39331:intron | 35.0% | |
| AATGCTAACAAGTGACCTTA+GGG | - | chr8.2:81298688-81298707 | MS.gene39331:intron | 35.0% | |
| ACATTTCTGACTTAGAATCG+GGG | - | chr8.2:81299108-81299127 | MS.gene39331:intron | 35.0% | |
| CATCCGTTAAAAAGAATCAC+AGG | + | chr8.2:81297853-81297872 | None:intergenic | 35.0% | |
| CTAAACTTGCAACTGAAGAT+TGG | + | chr8.2:81298033-81298052 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | - | chr8.2:81297717-81297736 | MS.gene39331:CDS | 35.0% | |
| CTGTGTATCACGTATAACTT+CGG | + | chr8.2:81297632-81297651 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | - | chr8.2:81298035-81298054 | MS.gene39331:CDS | 35.0% | |
| GACATTTCTGACTTAGAATC+GGG | - | chr8.2:81299107-81299126 | MS.gene39331:intron | 35.0% | |
| GATTCTAAGTCAGAAATGTC+AGG | + | chr8.2:81299107-81299126 | None:intergenic | 35.0% | |
| GCAAATGTGACACTCATAAT+GGG | + | chr8.2:81298360-81298379 | None:intergenic | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | - | chr8.2:81299155-81299174 | MS.gene39331:CDS | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | + | chr8.2:81297709-81297728 | None:intergenic | 35.0% | |
| TGCAAATGTGACACTCATAA+TGG | + | chr8.2:81298361-81298380 | None:intergenic | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | + | chr8.2:81298202-81298221 | None:intergenic | 35.0% | |
| ! | CACAGTTCTCATGTGTTTTT+CGG | + | chr8.2:81299468-81299487 | None:intergenic | 35.0% |
| ! | CGAAAAACATATCTAGGATC+AGG | + | chr8.2:81297949-81297968 | None:intergenic | 35.0% |
| ! | CTGTGATTCTTTTTAACGGA+TGG | - | chr8.2:81297851-81297870 | MS.gene39331:CDS | 35.0% |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | - | chr8.2:81298945-81298964 | MS.gene39331:intron | 35.0% |
| ! | TTTTTGTTGCAAAACCCAGA+GGG | + | chr8.2:81298316-81298335 | None:intergenic | 35.0% |
| !! | ATTCTTTTTAACGGATGGAC+AGG | - | chr8.2:81297856-81297875 | MS.gene39331:CDS | 35.0% |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | - | chr8.2:81297773-81297792 | MS.gene39331:CDS | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | - | chr8.2:81297805-81297824 | MS.gene39331:CDS | 35.0% |
| !!! | TTTTTTGTTGCAAAACCCAG+AGG | + | chr8.2:81298317-81298336 | None:intergenic | 35.0% |
| ACATATTTGGACCAAGGACA+TGG | + | chr8.2:81298189-81298208 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | - | chr8.2:81299206-81299225 | MS.gene39331:CDS | 40.0% | |
| ACTGGAATTGAACTGAACAC+TGG | - | chr8.2:81297508-81297527 | MS.gene39331:CDS | 40.0% | |
| ATGACAAAACCTCCAACAAC+CGG | + | chr8.2:81299551-81299570 | None:intergenic | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | + | chr8.2:81299212-81299231 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | + | chr8.2:81298195-81298214 | None:intergenic | 40.0% | |
| CATATAAATGCCGAAAAGGG+TGG | - | chr8.2:81299425-81299444 | MS.gene39331:CDS | 40.0% | |
| CATTAGAGATTACTCCCTCT+GGG | - | chr8.2:81298299-81298318 | MS.gene39331:intron | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | - | chr8.2:81299466-81299485 | MS.gene39331:CDS | 40.0% | |
| GAACTGAACACTGGAAAATC+TGG | - | chr8.2:81297517-81297536 | MS.gene39331:CDS | 40.0% | |
| GCCTATCGACAACCTAATAA+AGG | + | chr8.2:81297470-81297489 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | - | chr8.2:81297784-81297803 | MS.gene39331:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | - | chr8.2:81298040-81298059 | MS.gene39331:CDS | 40.0% | |
| GTTTCTTAACTAGTGCCCTA+AGG | + | chr8.2:81298706-81298725 | None:intergenic | 40.0% | |
| TATGCTAACAAGTGCCCTTA+GGG | + | chr8.2:81298846-81298865 | None:intergenic | 40.0% | |
| TCCCTTCTTCCCTGAAAATA+CGG | + | chr8.2:81297749-81297768 | None:intergenic | 40.0% | |
| TTATGCTAACAAGTGCCCTT+AGG | + | chr8.2:81298847-81298866 | None:intergenic | 40.0% | |
| TTCAAATGCAATTCAGCACC+TGG | + | chr8.2:81297913-81297932 | None:intergenic | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | - | chr8.2:81297466-81297485 | MS.gene39331:CDS | 40.0% |
| ! | TGGTCCAAATATGTTGCTTG+AGG | - | chr8.2:81298195-81298214 | MS.gene39331:intron | 40.0% |
| ! | TTTAACGGATGGACAGGTAT+TGG | - | chr8.2:81297862-81297881 | MS.gene39331:CDS | 40.0% |
| !! | AGGTATTGGCAAGAACAAAC+AGG | - | chr8.2:81297876-81297895 | MS.gene39331:CDS | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | - | chr8.2:81299217-81299236 | MS.gene39331:CDS | 40.0% |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | - | chr8.2:81297688-81297707 | MS.gene39331:CDS | 40.0% |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | - | chr8.2:81299216-81299235 | MS.gene39331:CDS | 40.0% |
| AAACAGGAGAACGGAAAACC+AGG | - | chr8.2:81297892-81297911 | MS.gene39331:CDS | 45.0% | |
| AACTTCGGCAGAGGTTATCA+AGG | + | chr8.2:81297617-81297636 | None:intergenic | 45.0% | |
| AAGGGATCTCATTGTGGAGT+TGG | - | chr8.2:81297763-81297782 | MS.gene39331:CDS | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | - | chr8.2:81298601-81298620 | MS.gene39331:intron | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | - | chr8.2:81298175-81298194 | MS.gene39331:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | + | chr8.2:81299221-81299240 | None:intergenic | 45.0% | |
| ACCCTCTTCTGATCTTCCTT+CGG | + | chr8.2:81299718-81299737 | None:intergenic | 45.0% | |
| ACTTCGGCAGAGGTTATCAA+GGG | + | chr8.2:81297616-81297635 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | + | chr8.2:81299392-81299411 | None:intergenic | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | - | chr8.2:81299572-81299591 | MS.gene39331:CDS | 45.0% | |
| ATACCTAGTCCCCAAAGTAG+CGG | - | chr8.2:81299506-81299525 | MS.gene39331:CDS | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | + | chr8.2:81297626-81297645 | None:intergenic | 45.0% | |
| ATGCTAACAAGTGCCCTTAG+GGG | + | chr8.2:81298845-81298864 | None:intergenic | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | - | chr8.2:81298606-81298625 | MS.gene39331:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | + | chr8.2:81299387-81299406 | None:intergenic | 45.0% | |
| CATGAGAACTGTGGCTTCTA+CGG | - | chr8.2:81299475-81299494 | MS.gene39331:CDS | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | - | chr8.2:81298602-81298621 | MS.gene39331:intron | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | + | chr8.2:81297464-81297483 | None:intergenic | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | - | chr8.2:81299377-81299396 | MS.gene39331:CDS | 45.0% | |
| CTTCTGATCTTCCTTCGGAA+AGG | + | chr8.2:81299713-81299732 | None:intergenic | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | + | chr8.2:81299376-81299395 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | + | chr8.2:81299256-81299275 | None:intergenic | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | + | chr8.2:81297463-81297482 | None:intergenic | 45.0% | |
| GCATTAGAGATTACTCCCTC+TGG | - | chr8.2:81298298-81298317 | MS.gene39331:intron | 45.0% | |
| GGAAGATCAGAAGAGGGTTT+CGG | - | chr8.2:81299720-81299739 | MS.gene39331:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+CGG | - | chr8.2:81297883-81297902 | MS.gene39331:CDS | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | - | chr8.2:81299566-81299585 | MS.gene39331:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | - | chr8.2:81297565-81297584 | MS.gene39331:CDS | 45.0% | |
| TCCGAAGGAAGATCAGAAGA+GGG | - | chr8.2:81299714-81299733 | MS.gene39331:CDS | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | + | chr8.2:81297465-81297484 | None:intergenic | 45.0% | |
| TTCCGAAGGAAGATCAGAAG+AGG | - | chr8.2:81299713-81299732 | MS.gene39331:CDS | 45.0% | |
| TTTCTGACTTAGAATCGGGG+AGG | - | chr8.2:81299111-81299130 | MS.gene39331:intron | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | + | chr8.2:81299519-81299538 | None:intergenic | 45.0% |
| ! | ACCAAGGACATGGAGTGTTA+TGG | + | chr8.2:81298179-81298198 | None:intergenic | 45.0% |
| ! | CTACTTTGGGGACTAGGTAT+TGG | + | chr8.2:81299506-81299525 | None:intergenic | 45.0% |
| ! | GAAAAACTCGCCACCCTTTT+CGG | + | chr8.2:81299438-81299457 | None:intergenic | 45.0% |
| ! | GGGACTGATGATGTTTGAAC+AGG | + | chr8.2:81297595-81297614 | None:intergenic | 45.0% |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | - | chr8.2:81297490-81297509 | MS.gene39331:CDS | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | - | chr8.2:81297737-81297756 | MS.gene39331:CDS | 45.0% |
| ! | TTGACTCGTTGAGCACATAC+TGG | - | chr8.2:81299072-81299091 | MS.gene39331:intron | 45.0% |
| ! | TTGGAGATCGCCGTATTTTC+AGG | - | chr8.2:81297736-81297755 | MS.gene39331:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | - | chr8.2:81297745-81297764 | MS.gene39331:CDS | 45.0% |
| AATCAACCAAGCTCCTGGGT+TGG | + | chr8.2:81299252-81299271 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | - | chr8.2:81299679-81299698 | MS.gene39331:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | - | chr8.2:81297475-81297494 | MS.gene39331:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | - | chr8.2:81299269-81299288 | MS.gene39331:CDS | 50.0% | |
| CACCAAAGTCTCCGCTACTT+TGG | + | chr8.2:81299520-81299539 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | + | chr8.2:81299314-81299333 | None:intergenic | 50.0% | |
| CCCATTGTGAGTGTCACATC+TGG | + | chr8.2:81298605-81298624 | None:intergenic | 50.0% | |
| CCTTAACTAGTGCCCCCTAA+GGG | - | chr8.2:81298829-81298848 | MS.gene39331:intron | 50.0% | |
| CCTTGCAGCAGAACTATCTG+AGG | + | chr8.2:81297997-81298016 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | + | chr8.2:81299257-81299276 | None:intergenic | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | + | chr8.2:81299611-81299630 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | - | chr8.2:81299380-81299399 | MS.gene39331:CDS | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | + | chr8.2:81299282-81299301 | None:intergenic | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | - | chr8.2:81299076-81299095 | MS.gene39331:intron | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | + | chr8.2:81297615-81297634 | None:intergenic | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | - | chr8.2:81299133-81299152 | MS.gene39331:intron | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | + | chr8.2:81297727-81297746 | None:intergenic | 50.0% | |
| GGGAAGAAGGGATCTCATTG+TGG | - | chr8.2:81297757-81297776 | MS.gene39331:CDS | 50.0% | |
| GTTCAAGGTGAAGGAAAGCG+TGG | - | chr8.2:81299581-81299600 | MS.gene39331:CDS | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | - | chr8.2:81299265-81299284 | MS.gene39331:CDS | 50.0% | |
| GTTTCCCTTCACCCCATTCA+GGG | + | chr8.2:81297831-81297850 | None:intergenic | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | - | chr8.2:81297474-81297493 | MS.gene39331:CDS | 50.0% | |
| TCCTTAACTAGTGCCCCCTA+AGG | - | chr8.2:81298828-81298847 | MS.gene39331:intron | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | + | chr8.2:81299281-81299300 | None:intergenic | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | - | chr8.2:81299077-81299096 | MS.gene39331:intron | 50.0% | |
| TGCCATCTTCATGGCACTTG+CGG | - | chr8.2:81299655-81299674 | MS.gene39331:CDS | 50.0% | |
| TGCTAACAAGTGCCCTTAGG+GGG | + | chr8.2:81298844-81298863 | None:intergenic | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | - | chr8.2:81297455-81297474 | MS.gene39331:CDS | 50.0% | |
| TGGCAAGCCATTAGTACAGC+TGG | - | chr8.2:81299601-81299620 | MS.gene39331:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | - | chr8.2:81297815-81297834 | MS.gene39331:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | - | chr8.2:81297816-81297835 | MS.gene39331:CDS | 50.0% |
| ! | AGACTTTGGTGCACTGAGTC+CGG | - | chr8.2:81299529-81299548 | MS.gene39331:CDS | 50.0% |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | + | chr8.2:81299518-81299537 | None:intergenic | 50.0% |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | - | chr8.2:81297994-81298013 | MS.gene39331:CDS | 50.0% |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | - | chr8.2:81297744-81297763 | MS.gene39331:CDS | 50.0% |
| AGGCATGCAAGCCTTTCCGA+AGG | - | chr8.2:81299699-81299718 | MS.gene39331:CDS | 55.0% | |
| ATTGCGACACGTGACGTGTG+TGG | - | chr8.2:81299625-81299644 | MS.gene39331:CDS | 55.0% | |
| CAAGATCCAACCCAGGAGCT+TGG | - | chr8.2:81299243-81299262 | MS.gene39331:CDS | 55.0% | |
| CGGGGAGGAGAGAGAGAAAA+GGG | - | chr8.2:81299126-81299145 | MS.gene39331:intron | 55.0% | |
| CGTGGGGAAAGCTTGAAGCA+TGG | - | chr8.2:81299312-81299331 | MS.gene39331:CDS | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | - | chr8.2:81298610-81298629 | MS.gene39331:intron | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | + | chr8.2:81299691-81299710 | None:intergenic | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | - | chr8.2:81299129-81299148 | MS.gene39331:intron | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | - | chr8.2:81299646-81299665 | MS.gene39331:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | + | chr8.2:81297832-81297851 | None:intergenic | 55.0% | |
| TCGGGGAGGAGAGAGAGAAA+AGG | - | chr8.2:81299125-81299144 | MS.gene39331:intron | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | - | chr8.2:81298609-81298628 | MS.gene39331:intron | 55.0% | |
| TGCCGCAAGTGCCATGAAGA+TGG | + | chr8.2:81299660-81299679 | None:intergenic | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | - | chr8.2:81299236-81299255 | MS.gene39331:CDS | 55.0% | |
| TTGGCCCTGAATGGGGTGAA+GGG | - | chr8.2:81297824-81297843 | MS.gene39331:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | - | chr8.2:81297817-81297836 | MS.gene39331:CDS | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | - | chr8.2:81299515-81299534 | MS.gene39331:CDS | 55.0% |
| ! | TCTCCGCTACTTTGGGGACT+AGG | + | chr8.2:81299512-81299531 | None:intergenic | 55.0% |
| !! | CCCTTAGGGGGCACTAGTTA+AGG | + | chr8.2:81298832-81298851 | None:intergenic | 55.0% |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | - | chr8.2:81299285-81299304 | MS.gene39331:CDS | 55.0% |
| GCACTGAGTCCGGTTGTTGG+AGG | - | chr8.2:81299539-81299558 | MS.gene39331:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | - | chr8.2:81299536-81299555 | MS.gene39331:CDS | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | - | chr8.2:81297823-81297842 | MS.gene39331:CDS | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | - | chr8.2:81299295-81299314 | MS.gene39331:CDS | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | - | chr8.2:81299323-81299342 | MS.gene39331:CDS | 65.0% | |
| GCGACACGTGACGTGTGTGG+AGG | - | chr8.2:81299628-81299647 | MS.gene39331:CDS | 65.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | - | chr8.2:81299294-81299313 | MS.gene39331:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | + | chr8.2:81299300-81299319 | None:intergenic | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | - | chr8.2:81299296-81299315 | MS.gene39331:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 81297454 | 81299754 | 81297454 | ID=MS.gene39331 |
| chr8.2 | mRNA | 81297454 | 81299754 | 81297454 | ID=MS.gene39331.t1;Parent=MS.gene39331 |
| chr8.2 | exon | 81299147 | 81299754 | 81299147 | ID=MS.gene39331.t1.exon1;Parent=MS.gene39331.t1 |
| chr8.2 | CDS | 81299147 | 81299754 | 81299147 | ID=cds.MS.gene39331.t1;Parent=MS.gene39331.t1 |
| chr8.2 | exon | 81297454 | 81298147 | 81297454 | ID=MS.gene39331.t1.exon2;Parent=MS.gene39331.t1 |
| chr8.2 | CDS | 81297454 | 81298147 | 81297454 | ID=cds.MS.gene39331.t1;Parent=MS.gene39331.t1 |
| Gene Sequence |
| Protein sequence |
