AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39574

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39574.t1 MTR_4g087590 97.189 249 7 0 1 249 1 249 0.0 497
MS.gene39574.t1 MTR_4g087590 97.189 249 7 0 1 249 64 312 6.41e-180 496
MS.gene39574.t1 MTR_4g087600 85.096 208 29 1 38 243 4 211 4.03e-125 355
MS.gene39574.t1 MTR_4g087590 98.611 144 2 0 1 144 64 207 8.55e-101 292
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39574.t1 AT5G10460 69.478 249 76 0 1 249 58 306 1.38e-126 361

Find 51 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCAACAGTTACATAATC+TGG 0.272874 4.2:+23855734 None:intergenic
GAACTTGGACTCGATGGTTT+TGG 0.274227 4.2:-23854512 MS.gene39574:CDS
TGGAGCTTTGCGCTGCAAAA+AGG 0.317353 4.2:-23855778 MS.gene39574:CDS
GGCTCATGGGACTGAAGCCT+TGG 0.350841 4.2:-23855855 MS.gene39574:CDS
TTCATTTCACTTGGAGTGGC+AGG 0.374055 4.2:-23856385 MS.gene39574:CDS
AATGGTTTCATCACCTCATC+AGG 0.382249 4.2:+23855414 None:intergenic
GGGATTCATGCAACTGAACT+TGG 0.398007 4.2:-23854527 MS.gene39574:CDS
TGAAGAAGCTGAGTTTGTTT+TGG 0.398598 4.2:-23855876 MS.gene39574:CDS
CAGCTAAATATGAAAAGCTT+GGG 0.409672 4.2:-23855461 MS.gene39574:CDS
CAAACAGGAGAGATGATCCT+TGG 0.430300 4.2:-23856433 MS.gene39574:intron
TGATCCTTGGTTTGCATCGT+TGG 0.434706 4.2:-23856420 MS.gene39574:CDS
TCTCTCCATCATGATATTAA+CGG 0.443583 4.2:-23854590 MS.gene39574:CDS
GCAGCTAAATATGAAAAGCT+TGG 0.466269 4.2:-23855462 MS.gene39574:CDS
AACAGTTACATAATCTGGAT+TGG 0.467937 4.2:+23855739 None:intergenic
GCTCATGGGACTGAAGCCTT+GGG 0.470652 4.2:-23855854 MS.gene39574:CDS
AAGCCTTGGGCGATGCCAAT+GGG 0.482602 4.2:-23855841 MS.gene39574:CDS
CATTTCACTTGGAGTGGCAG+GGG 0.489985 4.2:-23856383 MS.gene39574:CDS
GGGCTTGGACTTGCGAGTTG+TGG 0.493270 4.2:-23855906 MS.gene39574:CDS
CATTGAACGTGCATTCCCAT+TGG 0.498390 4.2:+23855826 None:intergenic
GATCCTTGGTTTGCATCGTT+GGG 0.501264 4.2:-23856419 MS.gene39574:CDS
GATCTTGTATTCATTTCACT+TGG 0.513220 4.2:-23856394 MS.gene39574:CDS
TTGTTCTACCACGTGAATGC+GGG 0.519095 4.2:+23854419 None:intergenic
GAAGCCTTGGGCGATGCCAA+TGG 0.523322 4.2:-23855842 MS.gene39574:CDS
GGAAACATCTGTACCGGCCA+TGG 0.524322 4.2:+23854634 None:intergenic
ATTAACGGTGCTAATGCTGC+TGG 0.532970 4.2:-23854575 MS.gene39574:CDS
GCAACTGAACTTGGACTCGA+TGG 0.533902 4.2:-23854518 MS.gene39574:CDS
AGAGACTTGCGTGTGATGCC+TGG 0.535025 4.2:-23855710 MS.gene39574:intron
TCTGGATTGGCTACCACCAT+AGG 0.537526 4.2:+23855752 None:intergenic
ATTCCCATTGGCATCGCCCA+AGG 0.544337 4.2:+23855838 None:intergenic
ATTGTTCTACCACGTGAATG+CGG 0.562774 4.2:+23854418 None:intergenic
TGTATTCATTTCACTTGGAG+TGG 0.565374 4.2:-23856389 MS.gene39574:CDS
AATGCGGGCAACACATAGGA+TGG 0.566778 4.2:+23854434 None:intergenic
TTGATGAGTGAGTTCTCCAC+TGG 0.576232 4.2:+23857089 None:intergenic
TCATTTCACTTGGAGTGGCA+GGG 0.578878 4.2:-23856384 MS.gene39574:CDS
AAGTCAGCTACGGCCATGGC+CGG 0.583766 4.2:-23854647 MS.gene39574:CDS
CGTGAATGCGGGCAACACAT+AGG 0.584164 4.2:+23854430 None:intergenic
AGCTAAATATGAAAAGCTTG+GGG 0.585901 4.2:-23855460 MS.gene39574:CDS
TGTTTCCGACTGTATTGCTG+TGG 0.590268 4.2:-23854618 MS.gene39574:CDS
ATACAAGTCAGCTACGGCCA+TGG 0.593923 4.2:-23854651 MS.gene39574:CDS
ACAGTCGGAAACATCTGTAC+CGG 0.594740 4.2:+23854628 None:intergenic
CAGGGGAGCAATATCTCTTG+AGG 0.601308 4.2:-23856366 MS.gene39574:intron
TCACTCATCAATACTTACAA+AGG 0.607161 4.2:-23857077 MS.gene39574:intron
TTTCTAGGAGCAATTACCAG+TGG 0.611343 4.2:-23857105 MS.gene39574:CDS
TAGCACCGTTAATATCATGA+TGG 0.613000 4.2:+23854585 None:intergenic
GATAATATACAAGTCAGCTA+CGG 0.615103 4.2:-23854657 MS.gene39574:CDS
ATGTGTTGCCCGCATTCACG+TGG 0.621579 4.2:-23854427 MS.gene39574:CDS
ATGGATGGGCAAACCTGATG+AGG 0.637905 4.2:-23855427 MS.gene39574:intron
CTTCCCAACGATGCAAACCA+AGG 0.648217 4.2:+23856416 None:intergenic
GTTTCCGACTGTATTGCTGT+GGG 0.657163 4.2:-23854617 MS.gene39574:CDS
ATCACCCACAGCAATACAGT+CGG 0.657241 4.2:+23854613 None:intergenic
GCTAAATATGAAAAGCTTGG+GGG 0.702982 4.2:-23855459 MS.gene39574:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATAAAAAAAAATACA+GGG - chr4.2:23855589-23855608 MS.gene39574:intron 10.0%
!! TCAAATATAAAAAAAAATAC+AGG - chr4.2:23855588-23855607 MS.gene39574:intron 10.0%
!! ATGATCGTATATAAATAAAT+AGG + chr4.2:23856839-23856858 None:intergenic 15.0%
!! ATTCAAAGAATTGAAAAATT+TGG - chr4.2:23855493-23855512 MS.gene39574:intron 15.0%
!! TTGGTTTAAATTATCTAAAA+CGG - chr4.2:23856593-23856612 MS.gene39574:intron 15.0%
!! AGAGAAAACAATTATCAAAA+TGG + chr4.2:23856238-23856257 None:intergenic 20.0%
!! AGTAAGTAATTCTCATTTAT+TGG - chr4.2:23856574-23856593 MS.gene39574:intron 20.0%
!! ATTCAATTCAAGTCAAATTA+TGG - chr4.2:23855565-23855584 MS.gene39574:intron 20.0%
!! TCTCAACTAAAAAATACATA+CGG + chr4.2:23855024-23855043 None:intergenic 20.0%
!!! AAGTTTTCATTTATATGACA+TGG - chr4.2:23856000-23856019 MS.gene39574:intron 20.0%
!!! ATAATATCTGTTTTTCAAAC+AGG - chr4.2:23855162-23855181 MS.gene39574:intron 20.0%
!!! ATGTAGAATTTGTTTTAGAT+TGG + chr4.2:23856735-23856754 None:intergenic 20.0%
!!! TGTAGAATTTGTTTTAGATT+GGG + chr4.2:23856734-23856753 None:intergenic 20.0%
!!! TTTTCTTGTGCAATATAAAA+TGG - chr4.2:23855348-23855367 MS.gene39574:intron 20.0%
! AAACAATAGATAACTGATTG+TGG - chr4.2:23855524-23855543 MS.gene39574:intron 25.0%
! AACTAATTATTCTGCTTACA+AGG - chr4.2:23855429-23855448 MS.gene39574:CDS 25.0%
! ACAATCAGTTATCTATTGTT+TGG + chr4.2:23855525-23855544 None:intergenic 25.0%
! ATATAAAATGGCATGATTCT+TGG - chr4.2:23855360-23855379 MS.gene39574:intron 25.0%
! CATAATGATTAACATCTTTG+TGG - chr4.2:23856856-23856875 MS.gene39574:intron 25.0%
! CATACAAATAACTTTGTCTA+GGG - chr4.2:23855684-23855703 MS.gene39574:intron 25.0%
! CTAAGAAACAGAAATTATGT+TGG + chr4.2:23854567-23854586 None:intergenic 25.0%
! CTATTGATGCATATTATCTT+TGG + chr4.2:23855648-23855667 None:intergenic 25.0%
! GGATTTATATCACATAGAAA+TGG + chr4.2:23856217-23856236 None:intergenic 25.0%
! TATAAAATGGCATGATTCTT+GGG - chr4.2:23855361-23855380 MS.gene39574:intron 25.0%
! TGAAGACCTTGAAAAAATAT+TGG - chr4.2:23855812-23855831 MS.gene39574:CDS 25.0%
! TGATGTTTAATCTTGTAGAA+AGG + chr4.2:23856411-23856430 None:intergenic 25.0%
!! AATCAATTTTTATCACTGGA+GGG - chr4.2:23857063-23857082 MS.gene39574:intron 25.0%
!! ATCCAATCAATTTTTATCAC+TGG - chr4.2:23857059-23857078 MS.gene39574:intron 25.0%
!! GAAAATAACATTTAGCCTTT+AGG + chr4.2:23855333-23855352 None:intergenic 25.0%
!!! AAAGCTCCAATATTTTTTCA+AGG + chr4.2:23855821-23855840 None:intergenic 25.0%
AAAATACATACGGATGAAAC+AGG + chr4.2:23855014-23855033 None:intergenic 30.0%
AACAAATTCTACAGATATCG+GGG - chr4.2:23855052-23855071 MS.gene39574:intron 30.0%
AACAGTTACATAATCTGGAT+TGG + chr4.2:23855874-23855893 None:intergenic 30.0%
AATACCTTCAAAGTTTCATC+GGG + chr4.2:23855476-23855495 None:intergenic 30.0%
ACTTACAACTTAGTTTAGCT+TGG + chr4.2:23856547-23856566 None:intergenic 30.0%
AGCTAAATATGAAAAGCTTG+GGG - chr4.2:23856150-23856169 MS.gene39574:intron 30.0%
AGTACACACAATTTGGTATA+AGG + chr4.2:23856107-23856126 None:intergenic 30.0%
AGTATGAAGTACACACAATT+TGG + chr4.2:23856114-23856133 None:intergenic 30.0%
ATAGTTGTCTTGGTAAACTA+AGG - chr4.2:23855386-23855405 MS.gene39574:intron 30.0%
CAACAAATTCTACAGATATC+GGG - chr4.2:23855051-23855070 MS.gene39574:intron 30.0%
CAGCTAAATATGAAAAGCTT+GGG - chr4.2:23856149-23856168 MS.gene39574:intron 30.0%
CTCCAGTGATAAAAATTGAT+TGG + chr4.2:23857064-23857083 None:intergenic 30.0%
CTTGAAAAAGTCAAAAGTCT+TGG - chr4.2:23854466-23854485 MS.gene39574:CDS 30.0%
GAATACCTTCAAAGTTTCAT+CGG + chr4.2:23855477-23855496 None:intergenic 30.0%
GAGAATATATTTCAATGAGC+TGG + chr4.2:23856785-23856804 None:intergenic 30.0%
GATAATATACAAGTCAGCTA+CGG - chr4.2:23856953-23856972 MS.gene39574:intron 30.0%
GATCTTGTATTCATTTCACT+TGG - chr4.2:23855216-23855235 MS.gene39574:intron 30.0%
GCAACAAATTCTACAGATAT+CGG - chr4.2:23855050-23855069 MS.gene39574:intron 30.0%
GCATACAAATAACTTTGTCT+AGG - chr4.2:23855683-23855702 MS.gene39574:intron 30.0%
GTGTGTACTTCATACTTATT+AGG - chr4.2:23856118-23856137 MS.gene39574:intron 30.0%
TAAACATTTGTGAGAGCTTA+TGG - chr4.2:23854674-23854693 MS.gene39574:intron 30.0%
TAAGAAAATTCTCCTGCTAA+TGG + chr4.2:23855117-23855136 None:intergenic 30.0%
TATGAAAACAGCTTATGACA+TGG - chr4.2:23854761-23854780 MS.gene39574:intron 30.0%
TCACTCATCAATACTTACAA+AGG - chr4.2:23854533-23854552 MS.gene39574:CDS 30.0%
TCTACATAATTCTTTGTCCA+TGG - chr4.2:23856748-23856767 MS.gene39574:intron 30.0%
TCTCTCCATCATGATATTAA+CGG - chr4.2:23857020-23857039 MS.gene39574:intron 30.0%
TTGTTCACAATTGTAATTGC+AGG + chr4.2:23856470-23856489 None:intergenic 30.0%
! CAATCAATTTTTATCACTGG+AGG - chr4.2:23857062-23857081 MS.gene39574:intron 30.0%
! GAGACACTATAGTTCTATTT+GGG + chr4.2:23854929-23854948 None:intergenic 30.0%
! TGAGACACTATAGTTCTATT+TGG + chr4.2:23854930-23854949 None:intergenic 30.0%
! TTTGATGCTTCTCTTTTTCT+AGG - chr4.2:23854490-23854509 MS.gene39574:CDS 30.0%
!! TATCTGTAGAATTTGTTGCA+CGG + chr4.2:23855049-23855068 None:intergenic 30.0%
AACGAAACAGAAAAAATGCG+TGG + chr4.2:23854611-23854630 None:intergenic 35.0%
ACATCATGTTCAATCCTTCA+AGG - chr4.2:23856425-23856444 MS.gene39574:CDS 35.0%
ACTCCATTCTATTAGTACCT+AGG - chr4.2:23856273-23856292 MS.gene39574:intron 35.0%
AGTAAGCTGAAAACAGCTTA+TGG + chr4.2:23854718-23854737 None:intergenic 35.0%
AGTAAGCTGAAAACAGTGTA+TGG + chr4.2:23854787-23854806 None:intergenic 35.0%
CAATAGATAACTGATTGTGG+TGG - chr4.2:23855527-23855546 MS.gene39574:intron 35.0%
CATGCGTACAATATACAAGT+AGG - chr4.2:23856308-23856327 MS.gene39574:intron 35.0%
CTTACTTACAAAAGCTCTCA+AGG - chr4.2:23854732-23854751 MS.gene39574:intron 35.0%
GAAAACTTATGCTGCAACTT+TGG + chr4.2:23855988-23856007 None:intergenic 35.0%
GAAACTAATCCTCAAGTCAA+GGG + chr4.2:23856690-23856709 None:intergenic 35.0%
GAAGATAAAGCAAATTCACC+AGG + chr4.2:23855921-23855940 None:intergenic 35.0%
GCAGCTAAATATGAAAAGCT+TGG - chr4.2:23856148-23856167 MS.gene39574:intron 35.0%
GCTAAATATGAAAAGCTTGG+GGG - chr4.2:23856151-23856170 MS.gene39574:intron 35.0%
GCTAACATAGAAATCCTTGA+AGG + chr4.2:23856442-23856461 None:intergenic 35.0%
GCTTCAACAGTTACATAATC+TGG + chr4.2:23855879-23855898 None:intergenic 35.0%
GTAAGCTGAAAACAGCTTAT+GGG + chr4.2:23854717-23854736 None:intergenic 35.0%
TAGCACCGTTAATATCATGA+TGG + chr4.2:23857028-23857047 None:intergenic 35.0%
TGAAACTAATCCTCAAGTCA+AGG + chr4.2:23856691-23856710 None:intergenic 35.0%
TGTATTCATTTCACTTGGAG+TGG - chr4.2:23855221-23855240 MS.gene39574:intron 35.0%
TGTTTCGTTTACGTTCTGTT+TGG - chr4.2:23854622-23854641 MS.gene39574:CDS 35.0%
TTCTTGGGTAATAGTTGTCT+TGG - chr4.2:23855376-23855395 MS.gene39574:intron 35.0%
! AAATAACTTTGTCTAGGGCT+TGG - chr4.2:23855689-23855708 MS.gene39574:intron 35.0%
!! ATCTGTAGAATTTGTTGCAC+GGG + chr4.2:23855048-23855067 None:intergenic 35.0%
!! TGAAGAAGCTGAGTTTGTTT+TGG - chr4.2:23855734-23855753 MS.gene39574:CDS 35.0%
AATGGTTTCATCACCTCATC+AGG + chr4.2:23856199-23856218 None:intergenic 40.0%
AGGAGCGATTGGATTTATAG+TGG - chr4.2:23855406-23855425 MS.gene39574:intron 40.0%
ATTCCGTTGCTTCTTCCTAA+AGG - chr4.2:23855315-23855334 MS.gene39574:intron 40.0%
CAGCCTAGGTACTAATAGAA+TGG + chr4.2:23856279-23856298 None:intergenic 40.0%
GGTATAAGGTGAGACTTGAT+AGG + chr4.2:23856093-23856112 None:intergenic 40.0%
GTTAGGTAAAGTCATCACTC+CGG + chr4.2:23856662-23856681 None:intergenic 40.0%
TAGGAAGAAGCAACGGAATA+TGG + chr4.2:23855314-23855333 None:intergenic 40.0%
TCTACCCGATGAAACTTTGA+AGG - chr4.2:23855469-23855488 MS.gene39574:CDS 40.0%
TGCAAAAAGGATTCCTATGG+TGG - chr4.2:23855845-23855864 MS.gene39574:CDS 40.0%
TTGGTAAACTAAGGAGCGAT+TGG - chr4.2:23855395-23855414 MS.gene39574:intron 40.0%
TTTCATCGGGTAGACTTAGT+AGG + chr4.2:23855463-23855482 None:intergenic 40.0%
! TAGCCTTTAGGAAGAAGCAA+CGG + chr4.2:23855321-23855340 None:intergenic 40.0%
! TTTCTAGGAGCAATTACCAG+TGG - chr4.2:23854505-23854524 MS.gene39574:CDS 40.0%
!! GCTGTTTTCATAAGCCATCA+TGG + chr4.2:23854822-23854841 None:intergenic 40.0%
!!! CTGAGTTTGTTTTGGCTCAT+GGG - chr4.2:23855742-23855761 MS.gene39574:CDS 40.0%
AAGCCATCATGGAGAGCTTA+TGG + chr4.2:23854811-23854830 None:intergenic 45.0%
ACAGTCGGAAACATCTGTAC+CGG + chr4.2:23856985-23857004 None:intergenic 45.0%
ACTAATCCTCAAGTCAAGGG+TGG + chr4.2:23856687-23856706 None:intergenic 45.0%
AGGTGATCGAATACACGACA+AGG + chr4.2:23854994-23855013 None:intergenic 45.0%
ATCACCCACAGCAATACAGT+CGG + chr4.2:23857000-23857019 None:intergenic 45.0%
ATCGGGTAGACTTAGTAGGA+AGG + chr4.2:23855459-23855478 None:intergenic 45.0%
ATTCTCCTGCTAATGGCATG+TGG + chr4.2:23855110-23855129 None:intergenic 45.0%
CAAACAGGAGAGATGATCCT+TGG - chr4.2:23855177-23855196 MS.gene39574:intron 45.0%
CATTGAACGTGCATTCCCAT+TGG + chr4.2:23855787-23855806 None:intergenic 45.0%
CCAAATGAGCAAGCCAACTA+GGG + chr4.2:23856370-23856389 None:intergenic 45.0%
CGCTGCAAAAAGGATTCCTA+TGG - chr4.2:23855842-23855861 MS.gene39574:CDS 45.0%
CTTCCATAAGCTCTCCATGA+TGG - chr4.2:23854805-23854824 MS.gene39574:intron 45.0%
GCATGTAATCTTAGCAGCCT+AGG + chr4.2:23856293-23856312 None:intergenic 45.0%
GGGATTCATGCAACTGAACT+TGG - chr4.2:23857083-23857102 MS.gene39574:CDS 45.0%
GGTGATCGAATACACGACAA+GGG + chr4.2:23854993-23855012 None:intergenic 45.0%
GTGATCGAATACACGACAAG+GGG + chr4.2:23854992-23855011 None:intergenic 45.0%
GTTTCCGACTGTATTGCTGT+GGG - chr4.2:23856993-23857012 MS.gene39574:intron 45.0%
TCAAGTCAAGGGTGGTAGTT+AGG + chr4.2:23856679-23856698 None:intergenic 45.0%
TCATTTCACTTGGAGTGGCA+GGG - chr4.2:23855226-23855245 MS.gene39574:intron 45.0%
TCGTGAGTTTCTTCCCTAGT+TGG - chr4.2:23856354-23856373 MS.gene39574:intron 45.0%
TCTACAGATATCGGGGAAAG+TGG - chr4.2:23855059-23855078 MS.gene39574:intron 45.0%
TGTTTCCGACTGTATTGCTG+TGG - chr4.2:23856992-23857011 MS.gene39574:intron 45.0%
TTATGCCACATGCCATTAGC+AGG - chr4.2:23855102-23855121 MS.gene39574:intron 45.0%
TTCATTTCACTTGGAGTGGC+AGG - chr4.2:23855225-23855244 MS.gene39574:intron 45.0%
TTGATGAGTGAGTTCTCCAC+TGG + chr4.2:23854524-23854543 None:intergenic 45.0%
TTTAGATTGGGAAGACGCAC+AGG + chr4.2:23856722-23856741 None:intergenic 45.0%
! ATTAACGGTGCTAATGCTGC+TGG - chr4.2:23857035-23857054 MS.gene39574:intron 45.0%
! GAACTTGGACTCGATGGTTT+TGG - chr4.2:23857098-23857117 MS.gene39574:CDS 45.0%
! TAACTACCACCCTTGACTTG+AGG - chr4.2:23856678-23856697 MS.gene39574:intron 45.0%
!! GAATTCTAGAGTTGCGACTC+CGG - chr4.2:23856640-23856659 MS.gene39574:intron 45.0%
!! GATCCTTGGTTTGCATCGTT+GGG - chr4.2:23855191-23855210 MS.gene39574:intron 45.0%
!! TGATCCTTGGTTTGCATCGT+TGG - chr4.2:23855190-23855209 MS.gene39574:intron 45.0%
!!! GCTGAGTTTGTTTTGGCTCA+TGG - chr4.2:23855741-23855760 MS.gene39574:CDS 45.0%
AATGCGGGCAACACATAGGA+TGG + chr4.2:23857179-23857198 None:intergenic 50.0%
AGCTGGATCATTGCAAGCCA+TGG + chr4.2:23856768-23856787 None:intergenic 50.0%
AGCTTGGGGGTGAAGTGAAA+TGG - chr4.2:23856164-23856183 MS.gene39574:intron 50.0%
ATACAAGTCAGCTACGGCCA+TGG - chr4.2:23856959-23856978 MS.gene39574:intron 50.0%
ATGGATGGGCAAACCTGATG+AGG - chr4.2:23856183-23856202 MS.gene39574:intron 50.0%
CAGATATCGGGGAAAGTGGT+AGG - chr4.2:23855063-23855082 MS.gene39574:intron 50.0%
CAGGGGAGCAATATCTCTTG+AGG - chr4.2:23855244-23855263 MS.gene39574:intron 50.0%
CATTTCACTTGGAGTGGCAG+GGG - chr4.2:23855227-23855246 MS.gene39574:intron 50.0%
CTTCCCAACGATGCAAACCA+AGG + chr4.2:23855197-23855216 None:intergenic 50.0%
GCAACTGAACTTGGACTCGA+TGG - chr4.2:23857092-23857111 MS.gene39574:CDS 50.0%
GCAATATCTCTTGAGGTGCG+TGG - chr4.2:23855251-23855270 MS.gene39574:intron 50.0%
GCCAAATGAGCAAGCCAACT+AGG + chr4.2:23856371-23856390 None:intergenic 50.0%
GCTTGCTCATTTGGCACACA+AGG - chr4.2:23856376-23856395 MS.gene39574:CDS 50.0%
GGGGGTGAAGTGAAATGGAT+GGG - chr4.2:23856169-23856188 MS.gene39574:intron 50.0%
TGGAGCTTTGCGCTGCAAAA+AGG - chr4.2:23855832-23855851 MS.gene39574:CDS 50.0%
TGGGGGTGAAGTGAAATGGA+TGG - chr4.2:23856168-23856187 MS.gene39574:intron 50.0%
!! CCCTAGTTGGCTTGCTCATT+TGG - chr4.2:23856367-23856386 MS.gene39574:CDS 50.0%
!! TCTGGATTGGCTACCACCAT+AGG + chr4.2:23855861-23855880 None:intergenic 50.0%
AAGCCTTGGGCGATGCCAAT+GGG - chr4.2:23855769-23855788 MS.gene39574:CDS 55.0%
AGAGACTTGCGTGTGATGCC+TGG - chr4.2:23855900-23855919 MS.gene39574:CDS 55.0%
ATGTGTTGCCCGCATTCACG+TGG - chr4.2:23857183-23857202 MS.gene39574:CDS 55.0%
ATTCCCATTGGCATCGCCCA+AGG + chr4.2:23855775-23855794 None:intergenic 55.0%
ATTGGGAAGACGCACAGGCA+TGG + chr4.2:23856717-23856736 None:intergenic 55.0%
CGTGAATGCGGGCAACACAT+AGG + chr4.2:23857183-23857202 None:intergenic 55.0%
GCTCATGGGACTGAAGCCTT+GGG - chr4.2:23855756-23855775 MS.gene39574:CDS 55.0%
! GGAAACATCTGTACCGGCCA+TGG + chr4.2:23856979-23856998 None:intergenic 55.0%
AAGTCAGCTACGGCCATGGC+CGG - chr4.2:23856963-23856982 MS.gene39574:intron 60.0%
GAAGCCTTGGGCGATGCCAA+TGG - chr4.2:23855768-23855787 MS.gene39574:CDS 60.0%
GGCTCATGGGACTGAAGCCT+TGG - chr4.2:23855755-23855774 MS.gene39574:CDS 60.0%
GGGCTTGGACTTGCGAGTTG+TGG - chr4.2:23855704-23855723 MS.gene39574:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 23854424 23857208 23854424 ID=MS.gene39574
chr4.2 mRNA 23854424 23857208 23854424 ID=MS.gene39574.t1;Parent=MS.gene39574
chr4.2 exon 23857078 23857208 23857078 ID=MS.gene39574.t1.exon1;Parent=MS.gene39574.t1
chr4.2 CDS 23857078 23857208 23857078 ID=cds.MS.gene39574.t1;Parent=MS.gene39574.t1
chr4.2 exon 23856367 23856448 23856367 ID=MS.gene39574.t1.exon2;Parent=MS.gene39574.t1
chr4.2 CDS 23856367 23856448 23856367 ID=cds.MS.gene39574.t1;Parent=MS.gene39574.t1
chr4.2 exon 23855711 23855927 23855711 ID=MS.gene39574.t1.exon3;Parent=MS.gene39574.t1
chr4.2 CDS 23855711 23855927 23855711 ID=cds.MS.gene39574.t1;Parent=MS.gene39574.t1
chr4.2 exon 23855428 23855492 23855428 ID=MS.gene39574.t1.exon4;Parent=MS.gene39574.t1
chr4.2 CDS 23855428 23855492 23855428 ID=cds.MS.gene39574.t1;Parent=MS.gene39574.t1
chr4.2 exon 23854424 23854678 23854424 ID=MS.gene39574.t1.exon5;Parent=MS.gene39574.t1
chr4.2 CDS 23854424 23854678 23854424 ID=cds.MS.gene39574.t1;Parent=MS.gene39574.t1
Gene Sequence

>MS.gene39574

ATGGTGATCATAAGCAACTCATCAAGACGTTCATCAGTGACTCTTGAAAAAGTCAAAAGTCTTGGTTTTGATGCTTCTCTTTTTCTAGGAGCAATTACCAGTGGAGAACTCACTCATCAATACTTACAAAGGTTGTTATGCCAACATAATTTCTGTTTCTTAGCTATGTTTAATTACGATAATACCACGCATTTTTTCTGTTTCGTTTACGTTCTGTTTGGATTCACTTATTTGAGTTTATATACTGACATAAACATTTGTGAGAGCTTATGGAAGCAGCTTATGACATGCCCATAAGCTGTTTTCAGCTTACTTACAAAAGCTCTCAAGGATGACTTATGAAAACAGCTTATGACATGGCCATACACTGTTTTCAGCTTACTTCCATAAGCTCTCCATGATGGCTTATGAAAACAGCTTATAGACTTTGTTTTTATCTTTTGTTATAAAAATAGCTTATATACAAAGACTTACATGATAAGCACTTAATTAAGTTGCTTATCCCAAATAGAACTATAGTGTCTCACTGCTCATTAAATGATGTTTACATGTATAATTGTTTATGCCCCTTGTCGTGTATTCGATCACCTGTTTCATCCGTATGTATTTTTTAGTTGAGATCCCGTGCAACAAATTCTACAGATATCGGGGAAAGTGGTAGGAAATAGATATGTAAAATTATGCCACATGCCATTAGCAGGAGAATTTTCTTAAGATAAATATATTTTGACTCTGTTGATAATATCTGTTTTTCAAACAGGAGAGATGATCCTTGGTTTGCATCGTTGGGAAGATCTTGTATTCATTTCACTTGGAGTGGCAGGGGAGCAATATCTCTTGAGGTGCGTGGAACAGCTATGCATTTTAGCTTGAATTATGATATGAAACCATATTCCGTTGCTTCTTCCTAAAGGCTAAATGTTATTTTCTTGTGCAATATAAAATGGCATGATTCTTGGGTAATAGTTGTCTTGGTAAACTAAGGAGCGATTGGATTTATAGTGGAACTAATTATTCTGCTTACAAGGAATTCCTTCCTACTAAGTCTACCCGATGAAACTTTGAAGGTATTCAAAGAATTGAAAAATTTGGTTTGCACCAAACAATAGATAACTGATTGTGGTGGTACTTTTCATATTTTATTCAATTCAAGTCAAATTATGGTCAAATATAAAAAAAAATACAGGGAAGTTATTTTGTTACATAATGTAAAGTTGATTGCCAAAGATAATATGCATCAATAGCTTTGAAATCTTACAGCATACAAATAACTTTGTCTAGGGCTTGGACTTGCGAGTTGTGGAGAATGTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGGACTGAAGCCTTGGGCGATGCCAATGGGAATGCACGTTCAATGAAACTTGAAGACCTTGAAAAAATATTGGAGCTTTGCGCTGCAAAAAGGATTCCTATGGTGGTAGCCAATCCAGATTATGTAACTGTTGAAGCAAGAGACTTGCGTGTGATGCCTGGTGAATTTGCTTTATCTTCTAAAAACATAGCACTTAAATAGTAGTTATAAGCTGTTTTTTCGTCCAAAGTTGCAGCATAAGTTTTCATTTATATGACATGGCTATCAGTATCAATTACATGTCTAAGAACTATACTTGTTTGTTATTCGAGTTCTGTTTTTTTTTTCTCCTATCAAGTCTCACCTTATACCAAATTGTGTGTACTTCATACTTATTAGGTACGCTAGCAGCTAAATATGAAAAGCTTGGGGGTGAAGTGAAATGGATGGGCAAACCTGATGAGGTGATGAAACCATTTCTATGTGATATAAATCCATTTTGATAATTGTTTTCTCTTGTGTGTCATACTATACTCCATTCTATTAGTACCTAGGCTGCTAAGATTACATGCGTACAATATACAAGTAGGACTGCATATTCAACAATCTTAGCTCGTGAGTTTCTTCCCTAGTTGGCTTGCTCATTTGGCACACAAGGCAAGTGTTACCTTTCTACAAGATTAAACATCATGTTCAATCCTTCAAGGATTTCTATGTTAGCTGCTTCCTGCAATTACAATTGTGAACAATGCGTTTGCACTTTGCAGTATGAGCATACAAAAGTAAATTCATTTTTTGAATTACCAAGCTAAACTAAGTTGTAAGTTACAAATAGTAAGTAATTCTCATTTATTGGTTTAAATTATCTAAAACGGTTTTCTTCATATTCTCAAATAAATGAATTCTAGAGTTGCGACTCCGGAGTGATGACTTTACCTAACTACCACCCTTGACTTGAGGATTAGTTTCACTGCCATGCCTGTGCGTCTTCCCAATCTAAAACAAATTCTACATAATTCTTTGTCCATGGCTTGCAATGATCCAGCTCATTGAAATATATTCTCAAAGTAGATGCATACTGTTAAGAAGTAGCAACCTATTTATTTATATACGATCATAATGATTAACATCTTTGTGGCTCTTGATATAATATCTTCTGTTGCATTTTTTTTTATACATGCATGTTCTTGACAGTGTTGTTGTGATTTGTCAGATAATATACAAGTCAGCTACGGCCATGGCCGGTACAGATGTTTCCGACTGTATTGCTGTGGGTGATTCTCTCCATCATGATATTAACGGTGCTAATGCTGCTGGAATCCAATCAATTTTTATCACTGGAGGGATTCATGCAACTGAACTTGGACTCGATGGTTTTGGAGAAGTAGCAGATTCATCTTCTGTACAATCACTTGTGACGAAATATAATGCATATCCATCCTATGTGTTGCCCGCATTCACGTGGTAG
Protein sequence

>MS.gene39574.t1

MVIISNSSRRSSVTLEKVKSLGFDASLFLGAITSGELTHQYLQRRDDPWFASLGRSCIHFTWSGRGAISLEGLDLRVVENVEEAEFVLAHGTEALGDANGNARSMKLEDLEKILELCAAKRIPMVVANPDYVTVEARDLRVMPGTLAAKYEKLGGEVKWMGKPDEIIYKSATAMAGTDVSDCIAVGDSLHHDINGANAAGIQSIFITGGIHATELGLDGFGEVADSSSVQSLVTKYNAYPSYVLPAFTW