AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39616

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 59 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTGTGGCAACTCTTAC+AGG 0.225907 4.2:-24369880 None:intergenic
ACCATAGCTTCCTAGCTTTC+CGG 0.232650 4.2:-24370809 None:intergenic
TCAACCTTACCATCACATTT+TGG 0.252049 4.2:-24369838 None:intergenic
ATACCTAGAATTTGCTTTGC+AGG 0.275664 4.2:-24370771 None:intergenic
ATCTCCTGAGCTGAGATGTT+GGG 0.302898 4.2:-24369993 None:intergenic
TCTGCTGAGTTTAAAGTGAT+TGG 0.364681 4.2:-24370910 None:intergenic
TCACTACCATCTTCAATTAC+TGG 0.376171 4.2:-24369940 None:intergenic
GGCCCTGCAAAGCAAATTCT+AGG 0.381337 4.2:+24370768 MS.gene39616:CDS
TAGTGATGATGAAGATGTTC+AGG 0.431216 4.2:+24369957 MS.gene39616:CDS
TTGGCTAACGGCGTGCTCAC+TGG 0.458208 4.2:-24370891 None:intergenic
GATGAAGACCCTAGGGTTGA+TGG 0.460558 4.2:+24369913 MS.gene39616:CDS
CAACTTTGTGCCGAGTTGAT+CGG 0.465207 4.2:+24371602 MS.gene39616:CDS
ATACAGATGTACTCCGAACT+AGG 0.472343 4.2:-24370048 None:intergenic
TACCTAGAATTTGCTTTGCA+GGG 0.475894 4.2:-24370770 None:intergenic
GGACAAGATAAGGAAATGAT+TGG 0.477525 4.2:+24370699 MS.gene39616:CDS
GAACTAGGGTACCTGGTAGA+TGG 0.478163 4.2:-24370033 None:intergenic
GATCTCCTGAGCTGAGATGT+TGG 0.479025 4.2:-24369994 None:intergenic
ACAACAACAGTATGTGGAAC+GGG 0.482220 4.2:+24370836 MS.gene39616:CDS
TACATCTGTATCACAGATGA+AGG 0.494690 4.2:+24370060 MS.gene39616:CDS
TACCTTACTCCTCAGCAGTT+GGG 0.495131 4.2:+24370979 MS.gene39616:CDS
GTTGATAGTGGGACAAGATA+AGG 0.496471 4.2:+24370689 MS.gene39616:intron
CTCCCAACTGCTGAGGAGTA+AGG 0.496832 4.2:-24370981 None:intergenic
AATCCCCAACATCTCAGCTC+AGG 0.503790 4.2:+24369989 MS.gene39616:CDS
ATCTACCAGGTACCCTAGTT+CGG 0.508012 4.2:+24370035 MS.gene39616:CDS
AACACCAAAATGTGATGGTA+AGG 0.512205 4.2:+24369834 MS.gene39616:CDS
TCTCCTGAGCTGAGATGTTG+GGG 0.523063 4.2:-24369992 None:intergenic
AATGATTGGTGACTTGAAGA+AGG 0.526810 4.2:+24370713 MS.gene39616:CDS
GGAAGAACAACAATTTATGT+TGG 0.534006 4.2:+24371514 MS.gene39616:CDS
ATACCTTACTCCTCAGCAGT+TGG 0.536169 4.2:+24370978 MS.gene39616:CDS
CTGTAAGAGTTGCCACAGAA+GGG 0.536965 4.2:+24369881 MS.gene39616:CDS
ACCGGAAAGCTAGGAAGCTA+TGG 0.539638 4.2:+24370808 MS.gene39616:CDS
TCTAGAAAGATTCAACATGA+AGG 0.544066 4.2:+24370860 MS.gene39616:CDS
TGTAAGAGTTGCCACAGAAG+GGG 0.544300 4.2:+24369882 MS.gene39616:CDS
GTTGTCACAACAACAGTATG+TGG 0.552341 4.2:+24370830 MS.gene39616:CDS
ACTGGCTCACCATCAACCCT+AGG 0.552430 4.2:-24369922 None:intergenic
GAGATCTTGATGAAGACCCT+AGG 0.554127 4.2:+24369905 MS.gene39616:CDS
TATCACAGATGAAGGGGAGC+CGG 0.555230 4.2:+24370068 MS.gene39616:CDS
CCTGTAAGAGTTGCCACAGA+AGG 0.558919 4.2:+24369880 MS.gene39616:CDS
ACTCTTACAGGAGGAGTGAT+CGG 0.576759 4.2:-24369868 None:intergenic
TTGTGCCGAGTTGATCGGCA+TGG 0.580056 4.2:+24371607 MS.gene39616:CDS
CTAGAAAGATTCAACATGAA+GGG 0.587088 4.2:+24370861 MS.gene39616:CDS
CACAACAACAGTATGTGGAA+CGG 0.590500 4.2:+24370835 MS.gene39616:CDS
CCAGAAACACCAAAATGTGA+TGG 0.595828 4.2:+24369829 MS.gene39616:CDS
ACATCTGTATCACAGATGAA+GGG 0.596386 4.2:+24370061 MS.gene39616:CDS
GTACTCCGAACTAGGGTACC+TGG 0.597846 4.2:-24370040 None:intergenic
GCGATCCATGCCGATCAACT+CGG 0.603085 4.2:-24371612 None:intergenic
ACTTTCGTCAACATATCCGC+AGG 0.606804 4.2:-24371560 None:intergenic
AGATCTTGATGAAGACCCTA+GGG 0.607768 4.2:+24369906 MS.gene39616:CDS
AGTTTAAAGTGATTGGCTAA+CGG 0.612416 4.2:-24370903 None:intergenic
GAGGTCGTCAACCATCTACC+AGG 0.616628 4.2:+24370022 MS.gene39616:CDS
TACAGATGTACTCCGAACTA+GGG 0.619016 4.2:-24370047 None:intergenic
CATCTGTATCACAGATGAAG+GGG 0.621190 4.2:+24370062 MS.gene39616:CDS
GATGATGAAGATGTTCAGGA+TGG 0.628053 4.2:+24369961 MS.gene39616:CDS
GGTGAGCCAGTAATTGAAGA+TGG 0.629717 4.2:+24369934 MS.gene39616:CDS
GTAAGAGTTGCCACAGAAGG+GGG 0.631031 4.2:+24369883 MS.gene39616:CDS
CTGGCTCACCATCAACCCTA+GGG 0.637088 4.2:-24369921 None:intergenic
CATCAAACTCCCAACTGCTG+AGG 0.637421 4.2:-24370988 None:intergenic
CAGCTCAGGAGATCAAGCAG+AGG 0.675895 4.2:+24370003 MS.gene39616:CDS
TCTGTGGCAACTCTTACAGG+AGG 0.691602 4.2:-24369877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGATTTCTTGATCAAT+TGG + chr4.2:24371364-24371383 MS.gene39616:intron 20.0%
!! AAAAGATTTCTTGATCAATT+GGG + chr4.2:24371365-24371384 MS.gene39616:intron 20.0%
!!! ATAAGTATAATTTTTCTGCA+AGG - chr4.2:24370166-24370185 None:intergenic 20.0%
! ATATTGATGTCAGATATCAT+TGG + chr4.2:24371477-24371496 MS.gene39616:intron 25.0%
! TCATTTGACATGAAAAATCT+AGG + chr4.2:24370747-24370766 MS.gene39616:CDS 25.0%
! TTTAGATGAAGAAATCTACA+TGG + chr4.2:24370446-24370465 MS.gene39616:intron 25.0%
!!! ATGTTTTGACATATACACAA+TGG - chr4.2:24370623-24370642 None:intergenic 25.0%
AATTTCTTATACCATTGCCT+TGG - chr4.2:24370555-24370574 None:intergenic 30.0%
ATTGAACTCATCTTAACAAC+TGG - chr4.2:24370345-24370364 None:intergenic 30.0%
CTAGAAAGATTCAACATGAA+GGG + chr4.2:24370861-24370880 MS.gene39616:CDS 30.0%
CTCATAAGGATAAAATCCAA+TGG + chr4.2:24370112-24370131 MS.gene39616:intron 30.0%
GGAAGAACAACAATTTATGT+TGG + chr4.2:24371514-24371533 MS.gene39616:CDS 30.0%
GTATATGTCAAAACATTTCG+AGG + chr4.2:24370627-24370646 MS.gene39616:intron 30.0%
TCAAGATGAAAAAGAAGCTA+TGG + chr4.2:24370950-24370969 MS.gene39616:CDS 30.0%
TCTAGAAAGATTCAACATGA+AGG + chr4.2:24370860-24370879 MS.gene39616:CDS 30.0%
! AGTTCAATTCGAGTTATACT+CGG + chr4.2:24370357-24370376 MS.gene39616:intron 30.0%
! AGTTTAAAGTGATTGGCTAA+CGG - chr4.2:24370906-24370925 None:intergenic 30.0%
! TGTAGATGATATGTTGATAG+TGG + chr4.2:24370677-24370696 MS.gene39616:intron 30.0%
!! GTAGATGATATGTTGATAGT+GGG + chr4.2:24370678-24370697 MS.gene39616:intron 30.0%
!! TCTTTTTCATCTTGACTAGT+AGG - chr4.2:24370945-24370964 None:intergenic 30.0%
AAACTGAAGAAGAGCTTGTA+CGG + chr4.2:24370516-24370535 MS.gene39616:intron 35.0%
AACACCAAAATGTGATGGTA+AGG + chr4.2:24369834-24369853 MS.gene39616:CDS 35.0%
AATGGTGTTTACTTTCTCAG+GGG + chr4.2:24371238-24371257 MS.gene39616:intron 35.0%
ACATCTGTATCACAGATGAA+GGG + chr4.2:24370061-24370080 MS.gene39616:CDS 35.0%
CAATCCTGGTAAAGAACATT+GGG + chr4.2:24371076-24371095 MS.gene39616:intron 35.0%
CGATGAAGTTCAAACTCATA+AGG + chr4.2:24370098-24370117 MS.gene39616:intron 35.0%
GAATGGTGTTTACTTTCTCA+GGG + chr4.2:24371237-24371256 MS.gene39616:intron 35.0%
GGACAAGATAAGGAAATGAT+TGG + chr4.2:24370699-24370718 MS.gene39616:CDS 35.0%
GGATAAAATCCAATGGATGA+AGG + chr4.2:24370119-24370138 MS.gene39616:intron 35.0%
GTAAAGACTGCATTTCTTCA+TGG + chr4.2:24370420-24370439 MS.gene39616:intron 35.0%
TACATCTGTATCACAGATGA+AGG + chr4.2:24370060-24370079 MS.gene39616:CDS 35.0%
TAGAAAGTCTACTTCAGGAA+TGG + chr4.2:24371220-24371239 MS.gene39616:intron 35.0%
TCACACTGATAAAAATCCTG+CGG + chr4.2:24371544-24371563 MS.gene39616:CDS 35.0%
TCACTACCATCTTCAATTAC+TGG - chr4.2:24369943-24369962 None:intergenic 35.0%
TCTGATAAGTGCTTATGCTT+TGG + chr4.2:24371137-24371156 MS.gene39616:intron 35.0%
TGAACTTCATCGAAACTTTC+CGG - chr4.2:24370090-24370109 None:intergenic 35.0%
! AATGATTGGTGACTTGAAGA+AGG + chr4.2:24370713-24370732 MS.gene39616:CDS 35.0%
! AATTCGAGTTATACTCGGAT+TGG + chr4.2:24370362-24370381 MS.gene39616:intron 35.0%
! ATACCTAGAATTTGCTTTGC+AGG - chr4.2:24370774-24370793 None:intergenic 35.0%
! TACCTAGAATTTGCTTTGCA+GGG - chr4.2:24370773-24370792 None:intergenic 35.0%
! TAGTGATGATGAAGATGTTC+AGG + chr4.2:24369957-24369976 MS.gene39616:CDS 35.0%
! TCAACCTTACCATCACATTT+TGG - chr4.2:24369841-24369860 None:intergenic 35.0%
! TCTGCTGAGTTTAAAGTGAT+TGG - chr4.2:24370913-24370932 None:intergenic 35.0%
!! GGATCAGAATCGATTTTGAA+AGG + chr4.2:24371161-24371180 MS.gene39616:intron 35.0%
AAAAGCCCTGAAGAACAAGT+GGG + chr4.2:24370212-24370231 MS.gene39616:intron 40.0%
AAAGCTCGCTTAGTCGTAAA+AGG + chr4.2:24370276-24370295 MS.gene39616:intron 40.0%
AAGCAGGGAAAGAAATGCTT+TGG + chr4.2:24371339-24371358 MS.gene39616:intron 40.0%
AAGTAGACTTTCTACCATCC+AGG - chr4.2:24371214-24371233 None:intergenic 40.0%
ACAACAACAGTATGTGGAAC+GGG + chr4.2:24370836-24370855 MS.gene39616:CDS 40.0%
AGATCTTGATGAAGACCCTA+GGG + chr4.2:24369906-24369925 MS.gene39616:CDS 40.0%
AGGATTTGAGAAGACTCGAA+AGG + chr4.2:24370479-24370498 MS.gene39616:intron 40.0%
ATACAGATGTACTCCGAACT+AGG - chr4.2:24370051-24370070 None:intergenic 40.0%
ATCTACATGGTTCAACCAGA+AGG + chr4.2:24370459-24370478 MS.gene39616:intron 40.0%
ATGGTGTTTACTTTCTCAGG+GGG + chr4.2:24371239-24371258 MS.gene39616:intron 40.0%
CAATATGCTTTGTACGAGAG+TGG - chr4.2:24371463-24371482 None:intergenic 40.0%
CACAACAACAGTATGTGGAA+CGG + chr4.2:24370835-24370854 MS.gene39616:CDS 40.0%
CATCTGTATCACAGATGAAG+GGG + chr4.2:24370062-24370081 MS.gene39616:CDS 40.0%
CCAATCCTGGTAAAGAACAT+TGG + chr4.2:24371075-24371094 MS.gene39616:intron 40.0%
CCAATGTTCTTTACCAGGAT+TGG - chr4.2:24371078-24371097 None:intergenic 40.0%
CCAGAAACACCAAAATGTGA+TGG + chr4.2:24369829-24369848 MS.gene39616:CDS 40.0%
GATAAGTGCTTATGCTTTGG+AGG + chr4.2:24371140-24371159 MS.gene39616:intron 40.0%
GATGATGAAGATGTTCAGGA+TGG + chr4.2:24369961-24369980 MS.gene39616:CDS 40.0%
GATGGTAGAAAGTCTACTTC+AGG + chr4.2:24371215-24371234 MS.gene39616:intron 40.0%
GGAATGGTGTTTACTTTCTC+AGG + chr4.2:24371236-24371255 MS.gene39616:intron 40.0%
GTGTTCAAGCTCAAGAAAGA+TGG + chr4.2:24370234-24370253 MS.gene39616:intron 40.0%
GTTGTCACAACAACAGTATG+TGG + chr4.2:24370830-24370849 MS.gene39616:CDS 40.0%
TAAAACAAGCTCCAAGGCAA+TGG + chr4.2:24370541-24370560 MS.gene39616:intron 40.0%
TACAGATGTACTCCGAACTA+GGG - chr4.2:24370050-24370069 None:intergenic 40.0%
TGATCAATTGGGAATGAAGC+AGG + chr4.2:24371376-24371395 MS.gene39616:intron 40.0%
TGGGAGTTTGATGTATGCAA+TGG + chr4.2:24370998-24371017 MS.gene39616:intron 40.0%
TGTTGCCTTATCAACAACAG+AGG + chr4.2:24371295-24371314 MS.gene39616:intron 40.0%
! ACGGATTAAAACAAGCTCCA+AGG + chr4.2:24370535-24370554 MS.gene39616:intron 40.0%
! ATTGGTTGCTAGCTTGGATT+TGG + chr4.2:24370380-24370399 MS.gene39616:intron 40.0%
! CGCTTAGTCGTAAAAGGTTT+TGG + chr4.2:24370282-24370301 MS.gene39616:intron 40.0%
! GGATTTGGAGCTTGAACAAA+TGG + chr4.2:24370395-24370414 MS.gene39616:intron 40.0%
! GTATGAAGATTTTGCGAGAC+CGG + chr4.2:24370790-24370809 MS.gene39616:CDS 40.0%
! TGGATCTTGAGGTATCTGAA+AGG + chr4.2:24371110-24371129 MS.gene39616:intron 40.0%
! TGTATGCAATGGTTTGCACT+AGG + chr4.2:24371009-24371028 MS.gene39616:intron 40.0%
!! GTTGATAGTGGGACAAGATA+AGG + chr4.2:24370689-24370708 MS.gene39616:intron 40.0%
!!! AAAGGTTTTGGACAAAAGCG+AGG + chr4.2:24370294-24370313 MS.gene39616:intron 40.0%
!!! CCATCACATTTTGGTGTTTC+TGG - chr4.2:24369832-24369851 None:intergenic 40.0%
AACATTGGGAAGCTGTGAAG+TGG + chr4.2:24371090-24371109 MS.gene39616:intron 45.0%
AAGCGCTTTGACTATCGCAA+TGG - chr4.2:24371415-24371434 None:intergenic 45.0%
AAGCTGTGAAGTGGATCTTG+AGG + chr4.2:24371099-24371118 MS.gene39616:intron 45.0%
ACAATGGTCTGCATCTGTCT+TGG - chr4.2:24370607-24370626 None:intergenic 45.0%
ACTCTTACAGGAGGAGTGAT+CGG - chr4.2:24369871-24369890 None:intergenic 45.0%
ACTTTCGTCAACATATCCGC+AGG - chr4.2:24371563-24371582 None:intergenic 45.0%
AGAGGCGGAATATATTGCCA+TGG + chr4.2:24371313-24371332 MS.gene39616:intron 45.0%
AGCAGGTTTCTTTCCAATCC+TGG + chr4.2:24371062-24371081 MS.gene39616:intron 45.0%
AGGCTACACAGATGCTGATA+TGG + chr4.2:24371181-24371200 MS.gene39616:intron 45.0%
ATACCTTACTCCTCAGCAGT+TGG + chr4.2:24370978-24370997 MS.gene39616:CDS 45.0%
ATATTGCCATGGCTGAAGCA+GGG + chr4.2:24371324-24371343 MS.gene39616:intron 45.0%
ATCTACCAGGTACCCTAGTT+CGG + chr4.2:24370035-24370054 MS.gene39616:CDS 45.0%
ATCTCCTGAGCTGAGATGTT+GGG - chr4.2:24369996-24370015 None:intergenic 45.0%
ATGCAGTTGGAGTTGTTAGC+AGG + chr4.2:24371045-24371064 MS.gene39616:intron 45.0%
CGAGTCTTCTCAAATCCTTC+TGG - chr4.2:24370477-24370496 None:intergenic 45.0%
CTGTAAGAGTTGCCACAGAA+GGG + chr4.2:24369881-24369900 MS.gene39616:CDS 45.0%
CTTGCATTGCCTTCATCCAT+TGG - chr4.2:24370131-24370150 None:intergenic 45.0%
GAAAAGCCCTGAAGAACAAG+TGG + chr4.2:24370211-24370230 MS.gene39616:intron 45.0%
GAACACCCACTTGTTCTTCA+GGG - chr4.2:24370220-24370239 None:intergenic 45.0%
GAAGGCAATGCAAGAAGAGA+TGG + chr4.2:24370137-24370156 MS.gene39616:intron 45.0%
GAGATCTTGATGAAGACCCT+AGG + chr4.2:24369905-24369924 MS.gene39616:CDS 45.0%
GAGCTTGTGAAACTTCCTGA+AGG + chr4.2:24370186-24370205 MS.gene39616:intron 45.0%
GCTTCCCAATGTTCTTTACC+AGG - chr4.2:24371083-24371102 None:intergenic 45.0%
GGTGAGCCAGTAATTGAAGA+TGG + chr4.2:24369934-24369953 MS.gene39616:CDS 45.0%
TACACAGATGCTGATATGGC+AGG + chr4.2:24371185-24371204 MS.gene39616:intron 45.0%
TACCTTACTCCTCAGCAGTT+GGG + chr4.2:24370979-24370998 MS.gene39616:CDS 45.0%
TATATTGCCATGGCTGAAGC+AGG + chr4.2:24371323-24371342 MS.gene39616:intron 45.0%
TGAACACCCACTTGTTCTTC+AGG - chr4.2:24370221-24370240 None:intergenic 45.0%
TGCCTTATCAACAACAGAGG+CGG + chr4.2:24371298-24371317 MS.gene39616:intron 45.0%
TGTAAGAGTTGCCACAGAAG+GGG + chr4.2:24369882-24369901 MS.gene39616:CDS 45.0%
TTCCGCCTCTGTTGTTGATA+AGG - chr4.2:24371303-24371322 None:intergenic 45.0%
! ACCATAGCTTCCTAGCTTTC+CGG - chr4.2:24370812-24370831 None:intergenic 45.0%
! TTGCGATAGTCAAAGCGCTT+TGG + chr4.2:24371415-24371434 MS.gene39616:intron 45.0%
!! CAACTTTGTGCCGAGTTGAT+CGG + chr4.2:24371602-24371621 MS.gene39616:CDS 45.0%
AATCCCCAACATCTCAGCTC+AGG + chr4.2:24369989-24370008 MS.gene39616:CDS 50.0%
ACCGGAAAGCTAGGAAGCTA+TGG + chr4.2:24370808-24370827 MS.gene39616:CDS 50.0%
ATCAAGATCTCCCCCTTCTG+TGG - chr4.2:24369896-24369915 None:intergenic 50.0%
CATCAAACTCCCAACTGCTG+AGG - chr4.2:24370991-24371010 None:intergenic 50.0%
CCAACTGCATGAGCAATGTC+TGG - chr4.2:24371035-24371054 None:intergenic 50.0%
CCAGACATTGCTCATGCAGT+TGG + chr4.2:24371032-24371051 MS.gene39616:intron 50.0%
CCTGTAAGAGTTGCCACAGA+AGG + chr4.2:24369880-24369899 MS.gene39616:CDS 50.0%
CCTTCTGTGGCAACTCTTAC+AGG - chr4.2:24369883-24369902 None:intergenic 50.0%
GATCTCCTGAGCTGAGATGT+TGG - chr4.2:24369997-24370016 None:intergenic 50.0%
GATGAAGACCCTAGGGTTGA+TGG + chr4.2:24369913-24369932 MS.gene39616:CDS 50.0%
GGCCCTGCAAAGCAAATTCT+AGG + chr4.2:24370768-24370787 MS.gene39616:CDS 50.0%
GTAAGAGTTGCCACAGAAGG+GGG + chr4.2:24369883-24369902 MS.gene39616:CDS 50.0%
TATCACAGATGAAGGGGAGC+CGG + chr4.2:24370068-24370087 MS.gene39616:CDS 50.0%
TCTCCTGAGCTGAGATGTTG+GGG - chr4.2:24369995-24370014 None:intergenic 50.0%
TCTGTGGCAACTCTTACAGG+AGG - chr4.2:24369880-24369899 None:intergenic 50.0%
TTCTTTCCCTGCTTCAGCCA+TGG - chr4.2:24371333-24371352 None:intergenic 50.0%
! GAACTAGGGTACCTGGTAGA+TGG - chr4.2:24370036-24370055 None:intergenic 50.0%
! TCATTGGTTGCGTCAAGCAG+CGG + chr4.2:24371493-24371512 MS.gene39616:intron 50.0%
! TTCAGGGCTTTTCTGCCTTC+AGG - chr4.2:24370204-24370223 None:intergenic 50.0%
! TTTTGCGAGACCGGAAAGCT+AGG + chr4.2:24370799-24370818 MS.gene39616:CDS 50.0%
!! ACTCGGATTGGTTGCTAGCT+TGG + chr4.2:24370374-24370393 MS.gene39616:intron 50.0%
!! GAAGACTCGAAAGGAGCACT+TGG + chr4.2:24370488-24370507 MS.gene39616:intron 50.0%
CAGCTCAGGAGATCAAGCAG+AGG + chr4.2:24370003-24370022 MS.gene39616:CDS 55.0%
CTCCCAACTGCTGAGGAGTA+AGG - chr4.2:24370984-24371003 None:intergenic 55.0%
CTGGCTCACCATCAACCCTA+GGG - chr4.2:24369924-24369943 None:intergenic 55.0%
GAGGTCGTCAACCATCTACC+AGG + chr4.2:24370022-24370041 MS.gene39616:CDS 55.0%
GATATGGCAGGTGACCTGGA+TGG + chr4.2:24371197-24371216 MS.gene39616:intron 55.0%
GCGATCCATGCCGATCAACT+CGG - chr4.2:24371615-24371634 None:intergenic 55.0%
TCTCAGGGGGAGCTGTATCA+TGG + chr4.2:24371252-24371271 MS.gene39616:intron 55.0%
TGCTGATATGGCAGGTGACC+TGG + chr4.2:24371193-24371212 MS.gene39616:intron 55.0%
! ACTGGCTCACCATCAACCCT+AGG - chr4.2:24369925-24369944 None:intergenic 55.0%
! GTACTCCGAACTAGGGTACC+TGG - chr4.2:24370043-24370062 None:intergenic 55.0%
!! TTGTGCCGAGTTGATCGGCA+TGG + chr4.2:24371607-24371626 MS.gene39616:CDS 55.0%
TTGGCTAACGGCGTGCTCAC+TGG - chr4.2:24370894-24370913 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 24369811 24371640 24369811 ID=MS.gene39616
chr4.2 mRNA 24369811 24371640 24369811 ID=MS.gene39616.t1;Parent=MS.gene39616
chr4.2 exon 24369811 24370093 24369811 ID=MS.gene39616.t1.exon1;Parent=MS.gene39616.t1
chr4.2 CDS 24369811 24370093 24369811 ID=cds.MS.gene39616.t1;Parent=MS.gene39616.t1
chr4.2 exon 24370697 24371002 24370697 ID=MS.gene39616.t1.exon2;Parent=MS.gene39616.t1
chr4.2 CDS 24370697 24371002 24370697 ID=cds.MS.gene39616.t1;Parent=MS.gene39616.t1
chr4.2 exon 24371513 24371640 24371513 ID=MS.gene39616.t1.exon3;Parent=MS.gene39616.t1
chr4.2 CDS 24371513 24371640 24371513 ID=cds.MS.gene39616.t1;Parent=MS.gene39616.t1
Gene Sequence

>MS.gene39616

ATGTCAGATTCTGCTATTCCAGAAACACCAAAATGTGATGGTAAGGTTGATCTTACACCGATCACTCCTCCTGTAAGAGTTGCCACAGAAGGGGGAGATCTTGATGAAGACCCTAGGGTTGATGGTGAGCCAGTAATTGAAGATGGTAGTGATGATGAAGATGTTCAGGATGGAGAGCAATCCCCAACATCTCAGCTCAGGAGATCAAGCAGAGGTCGTCAACCATCTACCAGGTACCCTAGTTCGGAGTACATCTGTATCACAGATGAAGGGGAGCCGGAAAGTTTCGATGAAGTTCAAACTCATAAGGATAAAATCCAATGGATGAAGGCAATGCAAGAAGAGATGGATTCCTTGCAGAAAAATTATACTTATGAGCTTGTGAAACTTCCTGAAGGCAGAAAAGCCCTGAAGAACAAGTGGGTGTTCAAGCTCAAGAAAGATGGTGACAAGCTAGTGAAGTATAAAGCTCGCTTAGTCGTAAAAGGTTTTGGACAAAAGCGAGGAATAGATTTTGATGAAATCTTCTCTCCAGTTGTTAAGATGAGTTCAATTCGAGTTATACTCGGATTGGTTGCTAGCTTGGATTTGGAGCTTGAACAAATGGACGTAAAGACTGCATTTCTTCATGGAGATTTAGATGAAGAAATCTACATGGTTCAACCAGAAGGATTTGAGAAGACTCGAAAGGAGCACTTGGTATGCAAACTGAAGAAGAGCTTGTACGGATTAAAACAAGCTCCAAGGCAATGGTATAAGAAATTTGACTCTTTCATGATGAGTCATGAATATACCAAGACAGATGCAGACCATTGTGTATATGTCAAAACATTTCGAGGTGACAAATTCATCATTCTTCTGTTATATGTAGATGATATGTTGATAGTGGGACAAGATAAGGAAATGATTGGTGACTTGAAGAAGGAATTGTCAAAATCATTTGACATGAAAAATCTAGGCCCTGCAAAGCAAATTCTAGGTATGAAGATTTTGCGAGACCGGAAAGCTAGGAAGCTATGGTTGTCACAACAACAGTATGTGGAACGGGTTCTAGAAAGATTCAACATGAAGGGTGCTAAACCAGTGAGCACGCCGTTAGCCAATCACTTTAAACTCAGCAGAGTGAGTTGTCCTACTAGTCAAGATGAAAAAGAAGCTATGGCTGCAATACCTTACTCCTCAGCAGTTGGGAGTTTGATGTATGCAATGGTTTGCACTAGGCCAGACATTGCTCATGCAGTTGGAGTTGTTAGCAGGTTTCTTTCCAATCCTGGTAAAGAACATTGGGAAGCTGTGAAGTGGATCTTGAGGTATCTGAAAGGAAGCTCTGATAAGTGCTTATGCTTTGGAGGATCAGAATCGATTTTGAAAGGCTACACAGATGCTGATATGGCAGGTGACCTGGATGGTAGAAAGTCTACTTCAGGAATGGTGTTTACTTTCTCAGGGGGAGCTGTATCATGGCAATCTAAATTGCAAAAATGTGTTGCCTTATCAACAACAGAGGCGGAATATATTGCCATGGCTGAAGCAGGGAAAGAAATGCTTTGGCTAAAAAGATTTCTTGATCAATTGGGAATGAAGCAGGAAAAGTATGCTATCCATTGCGATAGTCAAAGCGCTTTGGATTTGAGCAAGAATGCAATGTACCACTCTCGTACAAAGCATATTGATGTCAGATATCATTGGTTGCGTCAAGCAGCGGAAGAACAACAATTTATGTTGGAAAAAATTCACACTGATAAAAATCCTGCGGATATGTTGACGAAAGTTGTAGCACGTGAAAAGCTTCAACTTTGTGCCGAGTTGATCGGCATGGATCGCAAGTAA
Protein sequence

>MS.gene39616.t1

MSDSAIPETPKCDGKVDLTPITPPVRVATEGGDLDEDPRVDGEPVIEDGSDDEDVQDGEQSPTSQLRRSSRGRQPSTRYPSSEYICITDEGEPEMGQDKEMIGDLKKELSKSFDMKNLGPAKQILGMKILRDRKARKLWLSQQQYVERVLERFNMKGAKPVSTPLANHFKLSRVSCPTSQDEKEAMAAIPYSSAVGTEEQQFMLEKIHTDKNPADMLTKVVAREKLQLCAELIGMDRK