AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39646

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39646.t1 MTR_4g086160 90.598 234 19 2 1 234 1 231 1.46e-142 398
MS.gene39646.t1 MTR_4g086190 75.983 229 51 3 8 234 4 230 1.23e-114 327
MS.gene39646.t1 MTR_4g086220 73.750 240 49 3 1 234 3 234 2.63e-110 317
MS.gene39646.t1 MTR_4g086165 71.186 236 29 10 7 234 4 208 2.89e-100 290
MS.gene39646.t1 MTR_8g092460 72.059 68 19 0 88 155 134 201 1.85e-30 115
MS.gene39646.t1 MTR_7g020980 44.776 134 47 3 22 155 1 107 2.13e-30 111
MS.gene39646.t1 MTR_7g021010 43.284 134 49 2 22 155 1 107 5.63e-30 110
MS.gene39646.t1 MTR_2g105380 56.566 99 39 2 86 183 103 198 5.83e-30 114
MS.gene39646.t1 MTR_7g021010 72.308 65 18 0 91 155 4 68 6.10e-30 108
MS.gene39646.t1 MTR_3g090760 55.340 103 37 3 97 197 111 206 5.40e-29 112
MS.gene39646.t1 MTR_2g435590 78.125 64 13 1 93 155 89 152 8.91e-29 109
MS.gene39646.t1 MTR_1g087920 69.014 71 22 0 89 159 67 137 1.42e-28 109
MS.gene39646.t1 MTR_8g022820 61.250 80 31 0 76 155 100 179 2.27e-28 110
MS.gene39646.t1 MTR_8g022820 61.250 80 31 0 76 155 101 180 2.37e-28 110
MS.gene39646.t1 MTR_8g022820 61.250 80 31 0 76 155 101 180 2.37e-28 110
MS.gene39646.t1 MTR_5g009620 82.759 58 10 0 97 154 110 167 2.65e-28 109
MS.gene39646.t1 MTR_2g014340 70.312 64 19 0 99 162 19 82 1.31e-26 102
MS.gene39646.t1 MTR_4g078710 69.231 65 20 0 99 163 28 92 2.25e-26 102
MS.gene39646.t1 MTR_1g070070 69.014 71 21 1 86 155 8 78 2.71e-26 99.8
MS.gene39646.t1 MTR_2g078680 68.571 70 20 1 88 155 18 87 2.94e-26 101
MS.gene39646.t1 MTR_1g028560 48.000 125 47 3 46 154 48 170 5.99e-26 103
MS.gene39646.t1 MTR_2g015040 72.581 62 16 1 95 155 59 120 2.23e-25 97.8
MS.gene39646.t1 MTR_3g053690 70.492 61 18 0 96 156 24 84 3.60e-25 99.0
MS.gene39646.t1 MTR_2g015050 63.768 69 24 1 89 156 124 192 1.31e-24 98.6
MS.gene39646.t1 MTR_5g085100 67.188 64 21 0 98 161 45 108 1.38e-24 99.0
MS.gene39646.t1 MTR_8g099215 74.138 58 15 0 97 154 105 162 7.40e-24 97.4
MS.gene39646.t1 MTR_4g088005 68.852 61 18 1 96 155 54 114 7.79e-24 92.8
MS.gene39646.t1 MTR_1g048610 42.537 134 71 3 26 156 17 147 1.14e-23 95.1
MS.gene39646.t1 MTR_4g100420 66.667 69 22 1 89 156 147 215 1.20e-23 96.7
MS.gene39646.t1 MTR_4g100380 66.197 71 23 1 87 156 133 203 1.39e-23 95.9
MS.gene39646.t1 MTR_7g081815 61.644 73 27 1 97 168 59 131 1.46e-23 94.4
MS.gene39646.t1 MTR_4g100450 66.667 69 22 1 89 156 144 212 2.25e-23 95.9
MS.gene39646.t1 MTR_8g006840 70.968 62 16 2 99 158 125 186 2.33e-23 93.6
MS.gene39646.t1 MTR_7g081805 61.644 73 27 1 97 168 59 131 2.35e-23 94.0
MS.gene39646.t1 MTR_7g096700 65.753 73 24 1 84 155 5 77 2.46e-23 92.0
MS.gene39646.t1 MTR_5g085070 64.062 64 23 0 98 161 50 113 2.96e-23 95.5
MS.gene39646.t1 MTR_7g081795 68.333 60 18 1 97 155 58 117 5.22e-23 92.8
MS.gene39646.t1 MTR_3g095190 75.362 69 17 0 87 155 158 226 7.09e-23 95.5
MS.gene39646.t1 MTR_4g054740 53.125 96 32 4 96 178 94 189 7.54e-23 93.2
MS.gene39646.t1 MTR_1g090290 59.155 71 28 1 87 156 101 171 9.79e-23 92.0
MS.gene39646.t1 MTR_8g006825 54.023 87 34 3 97 181 94 176 1.14e-22 92.0
MS.gene39646.t1 MTR_3g098580 44.681 141 44 4 15 155 26 132 1.36e-22 93.2
MS.gene39646.t1 MTR_8g090350 66.129 62 21 0 94 155 108 169 1.61e-22 93.2
MS.gene39646.t1 MTR_1g090170 36.478 159 94 3 9 164 59 213 1.62e-22 94.0
MS.gene39646.t1 MTR_4g008860 61.290 62 24 0 94 155 3 64 2.44e-22 90.9
MS.gene39646.t1 MTR_7g096750 63.158 76 21 2 87 155 2 77 2.48e-22 89.4
MS.gene39646.t1 MTR_1g074310 69.492 59 17 1 98 155 20 78 2.50e-22 89.4
MS.gene39646.t1 MTR_5g083340 63.077 65 24 0 93 157 79 143 2.56e-22 94.4
MS.gene39646.t1 MTR_3g074130 62.857 70 22 1 94 163 145 210 2.85e-22 93.6
MS.gene39646.t1 MTR_8g006815 64.062 64 21 2 97 158 94 157 3.12e-22 90.5
MS.gene39646.t1 MTR_2g089170 49.485 97 48 1 99 195 65 160 3.40e-22 90.1
MS.gene39646.t1 MTR_4g010640 67.742 62 20 0 97 158 5 66 3.66e-22 90.9
MS.gene39646.t1 MTR_4g114570 65.625 64 22 0 97 160 5 68 3.98e-22 90.9
MS.gene39646.t1 MTR_2g438180 58.974 78 29 2 87 163 2 77 3.98e-22 88.6
MS.gene39646.t1 MTR_1g090170 37.748 151 87 3 17 164 154 300 4.08e-22 94.0
MS.gene39646.t1 MTR_5g082950 67.797 59 19 0 96 154 63 121 5.38e-22 92.8
MS.gene39646.t1 MTR_1g074230 72.881 59 15 1 98 155 18 76 1.05e-21 87.8
MS.gene39646.t1 MTR_5g062700 66.129 62 21 0 94 155 168 229 1.06e-21 92.4
MS.gene39646.t1 MTR_2g014300 70.175 57 17 0 99 155 15 71 1.13e-21 88.6
MS.gene39646.t1 MTR_5g075570 57.971 69 29 0 94 162 119 187 1.72e-21 90.5
MS.gene39646.t1 MTR_7g092190 65.517 58 20 0 98 155 29 86 1.73e-21 90.5
MS.gene39646.t1 MTR_7g046260 51.852 81 32 1 88 161 43 123 1.80e-21 89.4
MS.gene39646.t1 MTR_8g102800 42.424 99 53 1 67 161 1 99 2.10e-21 89.4
MS.gene39646.t1 MTR_3g102100 52.174 69 33 0 87 155 33 101 2.18e-21 87.8
MS.gene39646.t1 MTR_4g054360 65.217 69 21 2 99 164 124 192 2.72e-21 89.7
MS.gene39646.t1 MTR_2g103700 66.667 60 20 0 97 156 5 64 4.17e-21 87.0
MS.gene39646.t1 MTR_6g088405 60.317 63 25 0 99 161 44 106 4.53e-21 88.2
MS.gene39646.t1 MTR_2g101340 44.898 98 36 2 82 161 6 103 7.58e-21 87.0
MS.gene39646.t1 MTR_3g106290 61.290 62 24 0 94 155 3 64 1.02e-20 86.3
MS.gene39646.t1 MTR_2g090235 67.797 59 19 0 97 155 216 274 1.10e-20 90.1
MS.gene39646.t1 MTR_1g069985 55.294 85 34 3 85 165 60 144 1.21e-20 87.0
MS.gene39646.t1 MTR_4g054860 61.111 72 25 2 96 164 128 199 1.30e-20 88.2
MS.gene39646.t1 MTR_1g019110 59.016 61 25 0 95 155 40 100 1.50e-20 85.9
MS.gene39646.t1 MTR_2g016730 57.353 68 29 0 89 156 13 80 2.36e-20 88.2
MS.gene39646.t1 MTR_1g070015 58.904 73 27 2 96 165 81 153 3.80e-20 85.9
MS.gene39646.t1 MTR_4g082345 57.353 68 29 0 93 160 42 109 3.85e-20 87.4
MS.gene39646.t1 MTR_7g011630 60.317 63 25 0 92 154 35 97 4.90e-20 88.6
MS.gene39646.t1 MTR_6g012970 59.677 62 25 0 93 154 32 93 9.89e-20 87.4
MS.gene39646.t1 MTR_8g069360 63.333 60 22 0 95 154 40 99 1.04e-19 87.4
MS.gene39646.t1 MTR_5g016750 54.098 61 28 0 95 155 21 81 1.07e-19 83.6
MS.gene39646.t1 MTR_1g070020 55.000 80 33 2 89 165 60 139 1.45e-19 84.0
MS.gene39646.t1 MTR_2g019750 53.623 69 32 0 86 154 37 105 1.87e-19 85.1
MS.gene39646.t1 MTR_4g119270 50.685 73 36 0 86 158 40 112 2.06e-19 85.9
MS.gene39646.t1 MTR_0939s0010 62.903 62 23 0 99 160 65 126 2.25e-19 83.2
MS.gene39646.t1 MTR_8g085960 54.795 73 30 1 85 154 8 80 2.27e-19 84.0
MS.gene39646.t1 MTR_1g070000 60.294 68 24 2 101 165 86 153 2.35e-19 83.6
MS.gene39646.t1 MTR_7g096810 68.750 64 19 1 93 155 7 70 2.39e-19 81.3
MS.gene39646.t1 MTR_4g100650 61.404 57 22 0 99 155 74 130 2.63e-19 84.3
MS.gene39646.t1 MTR_3g110205 61.404 57 22 0 99 155 43 99 2.75e-19 82.4
MS.gene39646.t1 MTR_1g074250 68.333 60 17 1 98 155 18 77 3.02e-19 80.9
MS.gene39646.t1 MTR_5g012910 50.633 79 36 1 86 161 12 90 3.24e-19 82.4
MS.gene39646.t1 MTR_8g006410 48.193 83 36 1 86 161 32 114 4.17e-19 82.4
MS.gene39646.t1 MTR_5g032820 66.667 57 19 0 98 154 45 101 4.21e-19 85.1
MS.gene39646.t1 MTR_8g013860 57.143 63 27 0 99 161 47 109 4.69e-19 82.4
MS.gene39646.t1 MTR_1g069960 74.576 59 14 1 98 155 26 84 4.73e-19 80.9
MS.gene39646.t1 MTR_8g023680 64.151 53 19 0 93 145 110 162 4.96e-19 85.1
MS.gene39646.t1 MTR_1g070035 57.534 73 28 2 96 165 74 146 5.94e-19 82.4
MS.gene39646.t1 MTR_5g083330 59.091 66 27 0 90 155 26 91 6.54e-19 84.0
MS.gene39646.t1 MTR_1g070045 56.000 75 30 2 94 165 61 135 9.76e-19 80.9
MS.gene39646.t1 MTR_4g111915 56.716 67 29 0 93 159 47 113 1.03e-18 79.7
MS.gene39646.t1 MTR_1g014820 57.627 59 25 0 97 155 25 83 1.19e-18 82.4
MS.gene39646.t1 MTR_6g033255 66.667 72 24 0 96 167 17 88 1.21e-18 81.3
MS.gene39646.t1 MTR_1g014860 57.627 59 25 0 97 155 20 78 1.31e-18 81.6
MS.gene39646.t1 MTR_1g069940 53.125 96 32 3 96 178 92 187 1.42e-18 82.0
MS.gene39646.t1 MTR_4g112490 54.930 71 32 0 89 159 43 113 1.53e-18 80.9
MS.gene39646.t1 MTR_1g014800 53.968 63 29 0 93 155 25 87 1.63e-18 81.3
MS.gene39646.t1 MTR_7g084370 66.667 57 19 0 98 154 41 97 1.77e-18 82.4
MS.gene39646.t1 MTR_6g029180 54.054 74 32 1 81 154 17 88 1.80e-18 82.8
MS.gene39646.t1 MTR_8g032610 54.412 68 31 0 90 157 18 85 1.83e-18 82.8
MS.gene39646.t1 MTR_1g014780 57.627 59 25 0 97 155 36 94 3.55e-18 80.5
MS.gene39646.t1 MTR_7g117690 56.140 57 25 0 99 155 28 84 3.64e-18 79.3
MS.gene39646.t1 MTR_7g085810 61.404 57 22 0 98 154 29 85 4.15e-18 80.9
MS.gene39646.t1 MTR_7g070220 60.317 63 18 1 99 154 78 140 4.90e-18 82.8
MS.gene39646.t1 MTR_1g069945 53.125 96 32 3 96 178 98 193 6.50e-18 80.1
MS.gene39646.t1 MTR_8g027465 56.140 57 25 0 99 155 39 95 6.06e-17 76.3
MS.gene39646.t1 MTR_7g096780 55.319 94 21 3 93 183 79 154 6.25e-17 77.4
MS.gene39646.t1 MTR_4g035430 47.761 67 35 0 89 155 22 88 8.45e-17 76.6
MS.gene39646.t1 MTR_1g074370 44.275 131 47 5 94 209 68 187 1.45e-16 75.9
MS.gene39646.t1 MTR_7g096830 62.025 79 24 3 89 164 91 166 1.83e-16 76.3
MS.gene39646.t1 MTR_1g040430 65.385 52 17 1 106 156 118 169 2.18e-16 75.1
MS.gene39646.t1 MTR_1g110970 54.386 57 26 0 90 146 88 144 2.30e-16 77.4
MS.gene39646.t1 MTR_1g101600 49.367 79 32 1 84 154 18 96 2.82e-16 74.7
MS.gene39646.t1 MTR_1g043350 56.962 79 31 2 89 164 72 150 2.84e-16 75.1
MS.gene39646.t1 MTR_1g097190 49.296 71 33 1 90 157 14 84 3.15e-16 73.2
MS.gene39646.t1 MTR_3g017420 62.000 50 19 0 106 155 2 51 3.51e-16 71.2
MS.gene39646.t1 MTR_1g006660 55.556 81 31 1 86 161 29 109 3.99e-16 75.5
MS.gene39646.t1 MTR_3g105510 50.820 61 30 0 94 154 32 92 4.41e-16 75.1
MS.gene39646.t1 MTR_1g105400 53.571 56 26 0 90 145 106 161 4.88e-16 76.6
MS.gene39646.t1 MTR_2g043050 56.140 57 25 0 99 155 19 75 5.94e-16 74.3
MS.gene39646.t1 MTR_6g465530 60.714 56 22 0 99 154 33 88 1.31e-15 73.2
MS.gene39646.t1 MTR_6g465690 43.137 102 42 3 69 154 17 118 1.33e-15 73.9
MS.gene39646.t1 MTR_8g023700 55.556 54 24 0 92 145 110 163 1.89e-15 74.7
MS.gene39646.t1 MTR_2g043030 54.386 57 26 0 99 155 19 75 2.08e-15 72.4
MS.gene39646.t1 MTR_6g466130 51.389 72 29 1 89 154 50 121 3.26e-15 72.4
MS.gene39646.t1 MTR_6g465510 58.929 56 23 0 99 154 33 88 3.62e-15 72.0
MS.gene39646.t1 MTR_3g112440 62.500 64 24 0 99 162 39 102 5.66e-15 72.0
MS.gene39646.t1 MTR_1g012470 63.934 61 22 0 96 156 4 64 6.69e-15 71.2
MS.gene39646.t1 MTR_6g465430 52.778 72 25 1 92 154 38 109 8.02e-15 71.6
MS.gene39646.t1 MTR_6g088425 47.253 91 34 1 85 161 21 111 8.12e-15 71.6
MS.gene39646.t1 MTR_6g037610 82.000 50 9 0 106 155 187 236 1.00e-14 72.8
MS.gene39646.t1 MTR_6g466000 51.389 72 29 1 89 154 41 112 1.21e-14 70.9
MS.gene39646.t1 MTR_1g098460 82.000 50 9 0 106 155 146 195 1.22e-14 72.4
MS.gene39646.t1 MTR_6g465460 51.389 72 26 1 92 154 38 109 1.25e-14 71.6
MS.gene39646.t1 MTR_6g465450 50.000 72 27 1 92 154 38 109 1.39e-14 71.2
MS.gene39646.t1 MTR_6g465850 57.143 56 24 0 99 154 63 118 1.42e-14 71.6
MS.gene39646.t1 MTR_1g023170 51.899 79 31 1 77 155 25 96 1.55e-14 71.2
MS.gene39646.t1 MTR_5g008590 58.730 63 26 0 99 161 11 73 1.61e-14 69.7
MS.gene39646.t1 MTR_5g008540 50.000 62 31 0 101 162 26 87 1.65e-14 67.4
MS.gene39646.t1 MTR_6g466020 48.611 72 31 1 89 154 27 98 1.75e-14 69.7
MS.gene39646.t1 MTR_2g043040 52.632 57 27 0 99 155 19 75 2.51e-14 70.1
MS.gene39646.t1 MTR_7g028925 54.237 59 24 1 97 155 27 82 2.59e-14 67.0
MS.gene39646.t1 MTR_3g107380 66.667 60 20 0 97 156 6 65 3.32e-14 69.3
MS.gene39646.t1 MTR_4g102670 56.140 57 24 1 99 155 15 70 6.73e-14 67.8
MS.gene39646.t1 MTR_2g043020 43.478 69 39 0 87 155 7 75 1.24e-13 67.8
MS.gene39646.t1 MTR_6g465420 57.143 56 24 0 99 154 54 109 1.39e-13 68.6
MS.gene39646.t1 MTR_3g072610 45.361 97 43 3 85 172 4 99 1.83e-13 67.4
MS.gene39646.t1 MTR_5g085125 49.275 69 35 0 98 166 15 83 1.89e-13 66.6
MS.gene39646.t1 MTR_5g008790 52.459 61 27 1 97 155 16 76 2.19e-13 66.2
MS.gene39646.t1 MTR_5g009410 68.333 60 19 0 96 155 114 173 3.36e-13 68.2
MS.gene39646.t1 MTR_3g105480 51.852 54 26 0 101 154 33 86 8.72e-13 65.9
MS.gene39646.t1 MTR_5g057810 59.184 49 20 0 98 146 87 135 1.94e-12 65.9
MS.gene39646.t1 MTR_5g057647 59.184 49 20 0 98 146 87 135 1.94e-12 65.9
MS.gene39646.t1 MTR_5g008470 47.826 69 31 1 98 161 69 137 2.07e-12 63.9
MS.gene39646.t1 MTR_5g058470 58.065 62 25 1 96 156 93 154 5.64e-12 64.3
MS.gene39646.t1 MTR_5g053920 52.381 63 27 2 98 159 65 125 1.09e-11 63.9
MS.gene39646.t1 MTR_1g093600 35.455 110 66 2 47 153 9 116 3.06e-11 62.8
MS.gene39646.t1 MTR_5g010910 43.750 80 30 2 90 154 31 110 3.48e-11 61.2
MS.gene39646.t1 MTR_3g103460 37.113 97 58 2 94 187 408 504 3.65e-11 62.8
MS.gene39646.t1 MTR_5g010940 50.000 62 25 1 99 154 54 115 3.88e-11 61.2
MS.gene39646.t1 MTR_1g101550 58.621 58 23 1 98 155 56 112 4.38e-11 61.2
MS.gene39646.t1 MTR_2g085015 49.153 59 28 2 99 155 47 105 4.94e-11 60.8
MS.gene39646.t1 MTR_3g062440 50.000 74 35 2 99 170 115 188 6.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39646.t1 AT4G34410 46.774 186 55 4 8 158 19 195 2.87e-37 131
MS.gene39646.t1 AT5G67000 43.448 145 65 2 9 153 48 175 3.01e-32 116
MS.gene39646.t1 AT2G47520 73.239 71 18 1 85 155 37 106 2.54e-30 110
MS.gene39646.t1 AT2G33710 73.134 67 18 0 89 155 60 126 9.01e-30 110
MS.gene39646.t1 AT2G33710 73.134 67 18 0 89 155 60 126 1.03e-29 111
MS.gene39646.t1 AT4G11140 81.356 59 11 0 97 155 85 143 1.95e-29 111
MS.gene39646.t1 AT5G13330 66.667 72 23 1 85 155 24 95 3.03e-29 109
MS.gene39646.t1 AT5G61890 75.000 60 15 0 96 155 87 146 1.31e-28 108
MS.gene39646.t1 AT3G16770 72.308 65 18 0 91 155 71 135 1.73e-28 108
MS.gene39646.t1 AT4G23750 58.621 87 17 1 87 154 91 177 2.49e-27 107
MS.gene39646.t1 AT4G23750 58.621 87 17 1 87 154 91 177 2.49e-27 107
MS.gene39646.t1 AT4G27950 76.271 59 14 0 96 154 115 173 6.50e-27 106
MS.gene39646.t1 AT1G72360 67.188 64 21 0 92 155 18 81 1.71e-26 102
MS.gene39646.t1 AT1G03800 62.857 70 26 0 88 157 42 111 2.63e-26 102
MS.gene39646.t1 AT1G72360 67.188 64 21 0 92 155 69 132 2.78e-26 102
MS.gene39646.t1 AT1G72360 67.188 64 21 0 92 155 67 130 2.79e-26 102
MS.gene39646.t1 AT5G44210 70.149 67 20 0 94 160 28 94 2.88e-26 101
MS.gene39646.t1 AT3G15210 74.138 58 15 0 98 155 24 81 2.60e-25 99.4
MS.gene39646.t1 AT1G28370 74.138 58 15 0 98 155 57 114 3.42e-25 98.6
MS.gene39646.t1 AT5G53290 73.333 60 16 0 97 156 123 182 4.63e-25 101
MS.gene39646.t1 AT1G28370 74.138 58 15 0 98 155 19 76 5.52e-25 97.1
MS.gene39646.t1 AT5G51190 64.384 73 23 2 92 163 65 135 6.29e-25 98.6
MS.gene39646.t1 AT5G47230 54.737 95 42 1 63 156 120 214 1.04e-24 99.8
MS.gene39646.t1 AT3G61630 74.138 58 15 0 97 154 103 160 4.13e-24 98.2
MS.gene39646.t1 AT4G28140 46.281 121 45 2 95 195 139 259 1.27e-23 96.7
MS.gene39646.t1 AT5G47220 73.770 61 15 1 97 156 115 175 1.77e-23 95.1
MS.gene39646.t1 AT2G20350 43.478 138 59 2 13 150 20 138 1.95e-23 92.8
MS.gene39646.t1 AT1G50640 69.492 59 18 0 98 156 27 85 2.29e-23 94.4
MS.gene39646.t1 AT2G44840 52.041 98 35 3 85 172 69 164 2.49e-23 94.4
MS.gene39646.t1 AT4G17500 73.770 61 15 1 97 156 146 206 2.58e-23 95.1
MS.gene39646.t1 AT2G22200 62.319 69 25 1 94 161 66 134 2.91e-23 94.7
MS.gene39646.t1 AT1G78080 39.333 150 83 1 15 164 76 217 3.08e-23 96.3
MS.gene39646.t1 AT1G22190 61.644 73 24 1 94 166 78 146 3.44e-23 94.7
MS.gene39646.t1 AT4G39780 66.154 65 22 0 91 155 85 149 3.62e-23 94.7
MS.gene39646.t1 AT4G17490 72.581 62 16 1 96 156 134 195 4.87e-23 94.7
MS.gene39646.t1 AT5G07310 78.333 60 13 0 96 155 89 148 5.13e-23 94.4
MS.gene39646.t1 AT5G50080 73.611 72 15 1 84 155 75 142 6.13e-23 93.2
MS.gene39646.t1 AT5G43410 74.576 59 14 1 98 155 14 72 6.49e-23 90.5
MS.gene39646.t1 AT1G22985 67.606 71 18 2 96 161 72 142 6.62e-23 91.3
MS.gene39646.t1 AT1G36060 65.625 64 22 0 94 157 138 201 7.99e-23 94.7
MS.gene39646.t1 AT5G50080 73.611 72 15 1 84 155 66 133 8.14e-23 92.8
MS.gene39646.t1 AT3G20310 67.797 59 19 0 98 156 26 84 8.18e-23 93.2
MS.gene39646.t1 AT1G43160 50.746 134 49 5 22 155 1 117 9.44e-23 92.0
MS.gene39646.t1 AT2G31230 59.524 84 31 2 85 165 72 155 9.68e-23 93.2
MS.gene39646.t1 AT4G13620 66.667 66 22 0 97 162 230 295 1.18e-22 95.1
MS.gene39646.t1 AT3G23240 44.167 120 46 4 93 202 76 184 2.00e-22 91.7
MS.gene39646.t1 AT1G15360 68.333 60 19 0 97 156 5 64 2.02e-22 91.3
MS.gene39646.t1 AT1G15360 68.333 60 19 0 97 156 5 64 2.02e-22 91.3
MS.gene39646.t1 AT5G61600 65.574 61 20 1 97 156 86 146 2.56e-22 92.0
MS.gene39646.t1 AT1G71130 57.303 89 30 2 91 174 71 156 4.34e-22 89.4
MS.gene39646.t1 AT3G23230 71.186 59 16 1 98 155 19 77 7.14e-22 88.2
MS.gene39646.t1 AT2G20880 68.852 61 19 0 95 155 183 243 8.33e-22 92.4
MS.gene39646.t1 AT5G25190 61.290 62 24 0 94 155 3 64 1.19e-21 88.6
MS.gene39646.t1 AT5G65130 67.797 59 19 0 97 155 111 169 1.21e-21 90.9
MS.gene39646.t1 AT5G65130 67.797 59 19 0 97 155 109 167 1.31e-21 90.9
MS.gene39646.t1 AT5G05410 66.129 62 21 0 99 160 79 140 1.45e-21 91.3
MS.gene39646.t1 AT4G32800 54.930 71 32 0 85 155 5 75 1.50e-21 89.4
MS.gene39646.t1 AT1G28360 68.966 58 18 0 98 155 11 68 1.57e-21 88.6
MS.gene39646.t1 AT2G23340 57.812 64 27 0 92 155 21 84 1.74e-21 88.2
MS.gene39646.t1 AT5G05410 66.129 62 21 0 99 160 79 140 1.89e-21 91.3
MS.gene39646.t1 AT4G06746 59.322 59 24 0 97 155 34 92 2.79e-21 87.0
MS.gene39646.t1 AT2G46310 61.765 68 26 0 87 154 87 154 2.81e-21 90.1
MS.gene39646.t1 AT5G25390 63.934 61 22 0 97 157 5 65 2.86e-21 87.8
MS.gene39646.t1 AT1G75490 62.500 64 21 1 99 162 42 102 4.37e-21 87.8
MS.gene39646.t1 AT5G64750 78.000 50 11 0 106 155 192 241 4.48e-21 90.9
MS.gene39646.t1 AT5G11590 51.220 82 35 1 85 161 32 113 4.89e-21 88.6
MS.gene39646.t1 AT4G36900 55.556 63 28 0 93 155 24 86 5.19e-21 87.4
MS.gene39646.t1 AT5G13910 55.405 74 33 0 85 158 6 79 7.15e-21 87.4
MS.gene39646.t1 AT5G07580 63.934 61 21 1 97 156 108 168 1.04e-20 87.0
MS.gene39646.t1 AT1G46768 60.000 60 24 0 96 155 28 87 1.06e-20 85.1
MS.gene39646.t1 AT1G46768 60.000 60 24 0 96 155 28 87 1.09e-20 85.5
MS.gene39646.t1 AT1G46768 60.000 60 24 0 96 155 28 87 1.09e-20 85.5
MS.gene39646.t1 AT3G57600 63.793 58 21 0 98 155 27 84 1.48e-20 87.8
MS.gene39646.t1 AT4G18450 69.355 62 17 2 97 156 108 169 2.57e-20 87.8
MS.gene39646.t1 AT4G16750 47.826 92 43 2 85 174 24 112 3.17e-20 85.1
MS.gene39646.t1 AT1G71450 51.948 77 37 0 85 161 10 86 3.20e-20 85.1
MS.gene39646.t1 AT5G25810 56.944 72 29 1 86 155 21 92 3.50e-20 85.9
MS.gene39646.t1 AT5G19790 57.971 69 29 0 86 154 9 77 3.85e-20 86.3
MS.gene39646.t1 AT5G67190 35.714 126 72 2 93 213 15 136 4.43e-20 84.7
MS.gene39646.t1 AT3G16280 63.158 57 21 0 99 155 61 117 4.54e-20 85.9
MS.gene39646.t1 AT3G16280 63.158 57 21 0 99 155 79 135 5.22e-20 85.9
MS.gene39646.t1 AT2G35700 51.316 76 34 1 99 174 45 117 6.65e-20 84.3
MS.gene39646.t1 AT2G25820 63.158 57 21 0 99 155 26 82 7.56e-20 85.1
MS.gene39646.t1 AT1G21910 57.895 57 24 0 99 155 50 106 8.13e-20 85.1
MS.gene39646.t1 AT5G67010 38.211 123 53 3 13 132 21 123 8.19e-20 83.6
MS.gene39646.t1 AT5G25390 62.295 61 20 1 97 157 5 62 1.17e-19 83.6
MS.gene39646.t1 AT1G12980 66.667 57 19 0 98 154 56 112 1.20e-19 86.3
MS.gene39646.t1 AT3G50260 55.385 65 28 1 91 155 14 77 1.25e-19 82.8
MS.gene39646.t1 AT2G44940 63.158 57 21 0 99 155 100 156 1.26e-19 85.9
MS.gene39646.t1 AT3G11020 64.912 57 20 0 99 155 78 134 2.07e-19 85.5
MS.gene39646.t1 AT3G60490 61.404 57 22 0 99 155 71 127 6.21e-19 83.2
MS.gene39646.t1 AT5G18560 54.286 70 31 1 86 154 41 110 7.19e-19 84.3
MS.gene39646.t1 AT1G74930 34.911 169 78 6 86 228 8 170 7.78e-19 81.6
MS.gene39646.t1 AT5G18450 45.361 97 45 2 58 154 1 89 1.08e-18 83.2
MS.gene39646.t1 AT1G24590 66.667 57 19 0 98 154 57 113 1.35e-18 83.2
MS.gene39646.t1 AT1G01250 47.368 76 37 1 99 174 45 117 1.42e-18 80.9
MS.gene39646.t1 AT1G12890 59.155 71 25 1 88 154 6 76 1.83e-18 81.3
MS.gene39646.t1 AT2G40340 59.322 59 24 0 99 157 14 72 1.96e-18 82.4
MS.gene39646.t1 AT2G40340 59.322 59 24 0 99 157 14 72 1.96e-18 82.4
MS.gene39646.t1 AT2G40340 59.322 59 24 0 99 157 14 72 1.96e-18 82.4
MS.gene39646.t1 AT5G21960 59.016 61 25 0 95 155 3 63 2.62e-18 80.9
MS.gene39646.t1 AT2G40340 37.705 122 73 2 99 217 72 193 4.42e-18 81.6
MS.gene39646.t1 AT1G53910 64.865 74 24 1 89 162 115 186 5.59e-18 82.0
MS.gene39646.t1 AT1G53910 64.865 74 24 1 89 162 115 186 5.59e-18 82.0
MS.gene39646.t1 AT1G53910 64.865 74 24 1 89 162 113 184 5.67e-18 82.0
MS.gene39646.t1 AT2G40350 57.627 59 25 0 99 157 74 132 6.48e-18 78.6
MS.gene39646.t1 AT2G40350 57.627 59 25 0 99 157 67 125 7.48e-18 78.2
MS.gene39646.t1 AT2G40340 59.322 59 24 0 99 157 79 137 7.68e-18 81.6
MS.gene39646.t1 AT2G40340 59.322 59 24 0 99 157 72 130 8.17e-18 81.3
MS.gene39646.t1 AT1G28160 62.295 61 23 0 98 158 38 98 8.17e-18 80.1
MS.gene39646.t1 AT3G14230 68.056 72 22 1 85 155 109 180 8.86e-18 81.6
MS.gene39646.t1 AT3G14230 68.056 72 22 1 85 155 108 179 9.07e-18 81.6
MS.gene39646.t1 AT3G14230 68.056 72 22 1 85 155 113 184 9.36e-18 81.6
MS.gene39646.t1 AT1G06160 63.889 72 23 2 97 165 80 151 1.71e-17 79.0
MS.gene39646.t1 AT4G25470 57.576 66 28 0 89 154 41 106 2.30e-17 78.2
MS.gene39646.t1 AT5G51990 43.636 110 50 2 92 192 38 144 2.79e-17 78.2
MS.gene39646.t1 AT1G68550 68.000 50 16 0 96 145 110 159 3.58e-17 79.3
MS.gene39646.t1 AT1G68550 68.000 50 16 0 96 145 110 159 3.58e-17 79.3
MS.gene39646.t1 AT4G25490 56.061 66 29 0 89 154 38 103 4.48e-17 77.4
MS.gene39646.t1 AT1G19210 55.000 60 27 0 96 155 9 68 5.16e-17 76.6
MS.gene39646.t1 AT4G31060 51.562 64 31 0 92 155 20 83 5.60e-17 76.6
MS.gene39646.t1 AT3G23220 68.182 66 20 1 98 162 13 78 7.96e-17 74.7
MS.gene39646.t1 AT1G77200 58.824 68 28 0 88 155 32 99 9.78e-17 77.0
MS.gene39646.t1 AT2G36450 50.667 75 33 2 99 172 15 86 1.13e-16 75.5
MS.gene39646.t1 AT4G25480 54.545 66 30 0 89 154 41 106 1.70e-16 75.9
MS.gene39646.t1 AT1G53170 61.111 72 24 1 86 157 22 89 1.36e-15 72.8
MS.gene39646.t1 AT2G40220 60.294 68 27 0 87 154 43 110 1.54e-15 74.7
MS.gene39646.t1 AT1G04370 72.881 59 15 1 98 155 19 77 1.66e-15 71.2
MS.gene39646.t1 AT5G61590 61.111 72 25 2 88 156 94 165 3.87e-15 72.0
MS.gene39646.t1 AT5G11190 58.333 72 28 1 97 166 5 76 6.64e-15 70.9
MS.gene39646.t1 AT1G77640 46.988 83 41 1 93 172 37 119 2.36e-14 70.5
MS.gene39646.t1 AT1G22810 45.570 79 40 2 95 170 10 88 2.82e-14 68.2
MS.gene39646.t1 AT2G38340 59.091 66 19 1 98 155 69 134 5.80e-14 69.3
MS.gene39646.t1 AT1G64380 66.129 62 21 0 94 155 131 192 7.64e-14 70.1
MS.gene39646.t1 AT1G63030 47.297 74 30 1 90 154 12 85 1.96e-13 66.6
MS.gene39646.t1 AT1G63030 47.297 74 30 1 90 154 12 85 1.96e-13 66.6
MS.gene39646.t1 AT3G25890 64.444 45 16 0 101 145 133 177 2.88e-13 68.6
MS.gene39646.t1 AT3G25890 64.444 45 16 0 101 145 133 177 2.88e-13 68.6
MS.gene39646.t1 AT1G71520 43.750 80 40 2 96 170 11 90 6.31e-13 64.7
MS.gene39646.t1 AT1G12610 43.243 74 33 1 90 154 12 85 1.28e-12 65.1
MS.gene39646.t1 AT1G49120 61.702 47 18 0 99 145 87 133 1.50e-12 66.2
MS.gene39646.t1 AT1G44830 54.412 68 30 1 97 163 33 100 1.55e-12 65.1
MS.gene39646.t1 AT1G33760 59.016 61 24 1 99 158 20 80 2.61e-12 63.9
MS.gene39646.t1 AT1G68840 50.000 68 32 1 92 159 58 123 2.90e-11 62.8
MS.gene39646.t1 AT1G68840 50.000 68 32 1 92 159 58 123 2.90e-11 62.8
MS.gene39646.t1 AT1G80580 38.621 145 71 4 40 166 42 186 4.70e-11 61.2

Find 73 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAATTTATGAGGTTTA+TGG 0.148041 4.2:-24688111 MS.gene39646:CDS
CTGGAGATTCTTCTGGTTCT+AGG 0.189683 4.2:-24688082 MS.gene39646:CDS
ATTGAAACAACGACGGGGTT+TGG 0.291623 4.2:-24688182 MS.gene39646:CDS
CTGCTTCCGATGGTGGAATC+CGG 0.331036 4.2:+24688608 None:intergenic
TTGAAACAACGACGGGGTTT+GGG 0.339444 4.2:-24688181 MS.gene39646:CDS
GACGGGGTTTGGGAATAATA+AGG 0.342374 4.2:-24688171 MS.gene39646:CDS
CTGGTTCCTCAACATGCTTA+AGG 0.353177 4.2:+24688264 None:intergenic
CGAGACGTGCGGTCCGTGTT+TGG 0.360884 4.2:-24688394 MS.gene39646:CDS
TGGTTCCTCAACATGCTTAA+GGG 0.366696 4.2:+24688265 None:intergenic
GGAATCCGGGAGATGAAATT+CGG 0.367751 4.2:+24688622 None:intergenic
TCCTTCTGAGCATGTAATAA+AGG 0.379967 4.2:-24688231 MS.gene39646:CDS
TGCAACATAGCAGGATGTTT+AGG 0.384768 4.2:-24688527 MS.gene39646:CDS
CCGCAGGTTTCCATGTTTGT+TGG 0.386204 4.2:+24688554 None:intergenic
AGGCGGAGACTACGTTGGTT+AGG 0.389583 4.2:+24688669 None:intergenic
TCAGAAGGAACGATCACTTC+TGG 0.416956 4.2:+24688245 None:intergenic
AGCTTCCTCCGCCGTGGTAA+AGG 0.419719 4.2:+24688364 None:intergenic
GGCGGAGACTACGTTGGTTA+GGG 0.437512 4.2:+24688670 None:intergenic
GGTAGATGAGAAGGAGGAAG+AGG 0.439044 4.2:+24688733 None:intergenic
GCTGCTGCTGCTTCCGATGG+TGG 0.447949 4.2:+24688601 None:intergenic
CAGGTTTCCATGTTTGTTGG+TGG 0.450418 4.2:+24688557 None:intergenic
GGGTAATGAATTTGCGGTTG+AGG 0.456997 4.2:+24688643 None:intergenic
TGAATTTGCGGTTGAGGTGG+AGG 0.461589 4.2:+24688649 None:intergenic
GATTCTTCTGGTTCTAGGAC+AGG 0.461736 4.2:-24688077 MS.gene39646:CDS
CCATCGAGTTCCGTGGGCCG+AGG 0.463560 4.2:-24688319 MS.gene39646:CDS
GGTGAGAGTGGTAGATGAGA+AGG 0.470589 4.2:+24688724 None:intergenic
ATTACCCGAATTTCATCTCC+CGG 0.478489 4.2:-24688627 MS.gene39646:CDS
GAGAGTGGTAGATGAGAAGG+AGG 0.480674 4.2:+24688727 None:intergenic
GGCTGCATTGTCATAAGCTC+TGG 0.487916 4.2:+24688340 None:intergenic
GAATCCGGGAGATGAAATTC+GGG 0.490345 4.2:+24688623 None:intergenic
TGCTTCCGATGGTGGAATCC+GGG 0.490588 4.2:+24688609 None:intergenic
AAATTCGGGTAATGAATTTG+CGG 0.501466 4.2:+24688637 None:intergenic
AAACACGGACCGCACGTCTC+GGG 0.502410 4.2:+24688396 None:intergenic
CATCTCCCGGATTCCACCAT+CGG 0.506770 4.2:-24688614 MS.gene39646:CDS
GAGGAGTGAGGCAGAGACCA+TGG 0.509182 4.2:-24688445 MS.gene39646:CDS
TGCGGTGAATGCAACATAGC+AGG 0.510509 4.2:-24688536 MS.gene39646:CDS
TGCTATGTTGCATTCACCGC+AGG 0.510695 4.2:+24688538 None:intergenic
CGTGCGGTCCGTGTTTGGCT+CGG 0.511971 4.2:-24688389 MS.gene39646:CDS
AGGAGTGAGGCAGAGACCAT+GGG 0.517170 4.2:-24688444 MS.gene39646:CDS
CAAACACGGACCGCACGTCT+CGG 0.535999 4.2:+24688395 None:intergenic
TCCTTTATTACATGCTCAGA+AGG 0.537729 4.2:+24688230 None:intergenic
AACAAGTGGAAAATTGAGCT+TGG 0.538551 4.2:+24688295 None:intergenic
TGAGCTTGGCCCTCGGCCCA+CGG 0.547368 4.2:+24688309 None:intergenic
AATGCAGCCATCGAGTTCCG+TGG 0.550195 4.2:-24688326 MS.gene39646:CDS
ATGCAAATTGAAACAACGAC+GGG 0.553453 4.2:-24688188 MS.gene39646:CDS
CAGCAGCAGCATAGAACGAA+TGG 0.557723 4.2:-24688582 MS.gene39646:CDS
AATGACGGATTGTTCTTGAT+CGG 0.558070 4.2:+24688700 None:intergenic
AATGGTTCCACCAACAAACA+TGG 0.558564 4.2:-24688564 MS.gene39646:CDS
GGAAAATTGAGCTTGGCCCT+CGG 0.559126 4.2:+24688302 None:intergenic
CATCGAGTTCCGTGGGCCGA+GGG 0.562376 4.2:-24688318 MS.gene39646:CDS
TAATGAATTTGCGGTTGAGG+TGG 0.566894 4.2:+24688646 None:intergenic
CCTCGGCCCACGGAACTCGA+TGG 0.569959 4.2:+24688319 None:intergenic
ATTTGCGGTTGAGGTGGAGG+CGG 0.574905 4.2:+24688652 None:intergenic
TTCTTGATCGGAGGTGAGAG+TGG 0.585977 4.2:+24688712 None:intergenic
CGGAACCTTTACCACGGCGG+AGG 0.586411 4.2:-24688369 MS.gene39646:CDS
ATGCAGCCATCGAGTTCCGT+GGG 0.592651 4.2:-24688325 MS.gene39646:CDS
GACGGATTGTTCTTGATCGG+AGG 0.593092 4.2:+24688703 None:intergenic
GGTTAGGGCGGTGACAATGA+CGG 0.595527 4.2:+24688685 None:intergenic
TGAATCCCTTAAGCATGTTG+AGG 0.603976 4.2:-24688270 MS.gene39646:CDS
ATTCTTCTGGTTCTAGGACA+GGG 0.611454 4.2:-24688076 MS.gene39646:CDS
GGAGTGAGGCAGAGACCATG+GGG 0.630795 4.2:-24688443 MS.gene39646:CDS
TCTGGCAGCTTCCTCCGCCG+TGG 0.634042 4.2:+24688358 None:intergenic
TAAAGGTTCCGAGCCAAACA+CGG 0.637276 4.2:+24688381 None:intergenic
GGAGACTACGTTGGTTAGGG+CGG 0.662337 4.2:+24688673 None:intergenic
GATTCGTGACCCGAGACGTG+CGG 0.666469 4.2:-24688405 MS.gene39646:CDS
AAAAGAAGTATAGAGGAGTG+AGG 0.676652 4.2:-24688457 MS.gene39646:CDS
TTGGCTCGGAACCTTTACCA+CGG 0.679817 4.2:-24688375 MS.gene39646:CDS
TTAAGGGATTCATCAACAAG+TGG 0.686073 4.2:+24688281 None:intergenic
GATGCAAATTGAAACAACGA+CGG 0.695103 4.2:-24688189 MS.gene39646:CDS
GGTGGAGGCGGAGACTACGT+TGG 0.702584 4.2:+24688664 None:intergenic
CCAACAAACATGGAAACCTG+CGG 0.705953 4.2:-24688554 MS.gene39646:CDS
GAGTGAGGCAGAGACCATGG+GGG 0.735515 4.2:-24688442 MS.gene39646:CDS
GCTCGGAACCTTTACCACGG+CGG 0.739922 4.2:-24688372 MS.gene39646:CDS
TGCAAATTGAAACAACGACG+GGG 0.740336 4.2:-24688187 MS.gene39646:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAGGATTGTGATTTTT+TGG - chr4.2:24688648-24688667 MS.gene39646:CDS 20.0%
! TCAACAATTTATGAGGTTTA+TGG - chr4.2:24688693-24688712 MS.gene39646:CDS 25.0%
!! CTGATTTTCAACAATTTATG+AGG - chr4.2:24688686-24688705 MS.gene39646:CDS 25.0%
AAATTCGGGTAATGAATTTG+CGG + chr4.2:24688170-24688189 None:intergenic 30.0%
! AGAGCTAAAAAGAAGTATAG+AGG - chr4.2:24688340-24688359 MS.gene39646:CDS 30.0%
! ATGAGGTTTATGGAATTTTC+TGG - chr4.2:24688703-24688722 MS.gene39646:CDS 30.0%
AACAAGTGGAAAATTGAGCT+TGG + chr4.2:24688512-24688531 None:intergenic 35.0%
ATGCAAATTGAAACAACGAC+GGG - chr4.2:24688616-24688635 MS.gene39646:CDS 35.0%
GATGCAAATTGAAACAACGA+CGG - chr4.2:24688615-24688634 MS.gene39646:CDS 35.0%
TCCTTCTGAGCATGTAATAA+AGG - chr4.2:24688573-24688592 MS.gene39646:CDS 35.0%
TCCTTTATTACATGCTCAGA+AGG + chr4.2:24688577-24688596 None:intergenic 35.0%
TTAAGGGATTCATCAACAAG+TGG + chr4.2:24688526-24688545 None:intergenic 35.0%
! AAAAGAAGTATAGAGGAGTG+AGG - chr4.2:24688347-24688366 MS.gene39646:CDS 35.0%
!! AATGACGGATTGTTCTTGAT+CGG + chr4.2:24688107-24688126 None:intergenic 35.0%
!! GAATTTTCTGGAGATTCTTC+TGG - chr4.2:24688715-24688734 MS.gene39646:CDS 35.0%
AATGGTTCCACCAACAAACA+TGG - chr4.2:24688240-24688259 MS.gene39646:CDS 40.0%
ATTACCCGAATTTCATCTCC+CGG - chr4.2:24688177-24688196 MS.gene39646:CDS 40.0%
TAATGAATTTGCGGTTGAGG+TGG + chr4.2:24688161-24688180 None:intergenic 40.0%
TGAATCCCTTAAGCATGTTG+AGG - chr4.2:24688534-24688553 MS.gene39646:CDS 40.0%
TGCAAATTGAAACAACGACG+GGG - chr4.2:24688617-24688636 MS.gene39646:CDS 40.0%
TGCAACATAGCAGGATGTTT+AGG - chr4.2:24688277-24688296 MS.gene39646:CDS 40.0%
TGGTTCCTCAACATGCTTAA+GGG + chr4.2:24688542-24688561 None:intergenic 40.0%
!! ATTCTTCTGGTTCTAGGACA+GGG - chr4.2:24688728-24688747 MS.gene39646:CDS 40.0%
ATTGAAACAACGACGGGGTT+TGG - chr4.2:24688622-24688641 MS.gene39646:CDS 45.0%
CCAACAAACATGGAAACCTG+CGG - chr4.2:24688250-24688269 MS.gene39646:CDS 45.0%
CTGGTTCCTCAACATGCTTA+AGG + chr4.2:24688543-24688562 None:intergenic 45.0%
GAATCCGGGAGATGAAATTC+GGG + chr4.2:24688184-24688203 None:intergenic 45.0%
GACGGGGTTTGGGAATAATA+AGG - chr4.2:24688633-24688652 MS.gene39646:CDS 45.0%
GGAATCCGGGAGATGAAATT+CGG + chr4.2:24688185-24688204 None:intergenic 45.0%
GGGTAATGAATTTGCGGTTG+AGG + chr4.2:24688164-24688183 None:intergenic 45.0%
TAAAGGTTCCGAGCCAAACA+CGG + chr4.2:24688426-24688445 None:intergenic 45.0%
TCAGAAGGAACGATCACTTC+TGG + chr4.2:24688562-24688581 None:intergenic 45.0%
TTGAAACAACGACGGGGTTT+GGG - chr4.2:24688623-24688642 MS.gene39646:CDS 45.0%
! CAGGTTTCCATGTTTGTTGG+TGG + chr4.2:24688250-24688269 None:intergenic 45.0%
!! CTGGAGATTCTTCTGGTTCT+AGG - chr4.2:24688722-24688741 MS.gene39646:CDS 45.0%
!! GATTCTTCTGGTTCTAGGAC+AGG - chr4.2:24688727-24688746 MS.gene39646:CDS 45.0%
CAGCAGCAGCATAGAACGAA+TGG - chr4.2:24688222-24688241 MS.gene39646:CDS 50.0%
CCGCAGGTTTCCATGTTTGT+TGG + chr4.2:24688253-24688272 None:intergenic 50.0%
GAGAGTGGTAGATGAGAAGG+AGG + chr4.2:24688080-24688099 None:intergenic 50.0%
GGAAAATTGAGCTTGGCCCT+CGG + chr4.2:24688505-24688524 None:intergenic 50.0%
GGCTGCATTGTCATAAGCTC+TGG + chr4.2:24688467-24688486 None:intergenic 50.0%
GGTAGATGAGAAGGAGGAAG+AGG + chr4.2:24688074-24688093 None:intergenic 50.0%
GGTGAGAGTGGTAGATGAGA+AGG + chr4.2:24688083-24688102 None:intergenic 50.0%
TGAATTTGCGGTTGAGGTGG+AGG + chr4.2:24688158-24688177 None:intergenic 50.0%
TGCGGTGAATGCAACATAGC+AGG - chr4.2:24688268-24688287 MS.gene39646:CDS 50.0%
TGCTATGTTGCATTCACCGC+AGG + chr4.2:24688269-24688288 None:intergenic 50.0%
TTCTTGATCGGAGGTGAGAG+TGG + chr4.2:24688095-24688114 None:intergenic 50.0%
!! GACGGATTGTTCTTGATCGG+AGG + chr4.2:24688104-24688123 None:intergenic 50.0%
!! TTGGCTCGGAACCTTTACCA+CGG - chr4.2:24688429-24688448 MS.gene39646:CDS 50.0%
AATGCAGCCATCGAGTTCCG+TGG - chr4.2:24688478-24688497 MS.gene39646:CDS 55.0%
AGGAGTGAGGCAGAGACCAT+GGG - chr4.2:24688360-24688379 MS.gene39646:CDS 55.0%
ATGCAGCCATCGAGTTCCGT+GGG - chr4.2:24688479-24688498 MS.gene39646:CDS 55.0%
ATTTGCGGTTGAGGTGGAGG+CGG + chr4.2:24688155-24688174 None:intergenic 55.0%
CATCTCCCGGATTCCACCAT+CGG - chr4.2:24688190-24688209 MS.gene39646:CDS 55.0%
GCAGAGACCATGGGGGAAAT+GGG - chr4.2:24688369-24688388 MS.gene39646:CDS 55.0%
GGTTAGGGCGGTGACAATGA+CGG + chr4.2:24688122-24688141 None:intergenic 55.0%
! AGGCGGAGACTACGTTGGTT+AGG + chr4.2:24688138-24688157 None:intergenic 55.0%
! GGAGACTACGTTGGTTAGGG+CGG + chr4.2:24688134-24688153 None:intergenic 55.0%
! GGCGGAGACTACGTTGGTTA+GGG + chr4.2:24688137-24688156 None:intergenic 55.0%
!! CTGCTTCCGATGGTGGAATC+CGG + chr4.2:24688199-24688218 None:intergenic 55.0%
!! TGCTTCCGATGGTGGAATCC+GGG + chr4.2:24688198-24688217 None:intergenic 55.0%
AAACACGGACCGCACGTCTC+GGG + chr4.2:24688411-24688430 None:intergenic 60.0%
AGCTTCCTCCGCCGTGGTAA+AGG + chr4.2:24688443-24688462 None:intergenic 60.0%
CAAACACGGACCGCACGTCT+CGG + chr4.2:24688412-24688431 None:intergenic 60.0%
GAGGAGTGAGGCAGAGACCA+TGG - chr4.2:24688359-24688378 MS.gene39646:CDS 60.0%
GAGTGAGGCAGAGACCATGG+GGG - chr4.2:24688362-24688381 MS.gene39646:CDS 60.0%
GATTCGTGACCCGAGACGTG+CGG - chr4.2:24688399-24688418 MS.gene39646:CDS 60.0%
GCTCGGAACCTTTACCACGG+CGG - chr4.2:24688432-24688451 MS.gene39646:CDS 60.0%
GGAGTGAGGCAGAGACCATG+GGG - chr4.2:24688361-24688380 MS.gene39646:CDS 60.0%
GGCAGAGACCATGGGGGAAA+TGG - chr4.2:24688368-24688387 MS.gene39646:CDS 60.0%
TCAGCAGCCCATTTCCCCCA+TGG + chr4.2:24688379-24688398 None:intergenic 60.0%
CATCGAGTTCCGTGGGCCGA+GGG - chr4.2:24688486-24688505 MS.gene39646:CDS 65.0%
CGAGACGTGCGGTCCGTGTT+TGG - chr4.2:24688410-24688429 MS.gene39646:CDS 65.0%
CGGAACCTTTACCACGGCGG+AGG - chr4.2:24688435-24688454 MS.gene39646:CDS 65.0%
CGTGCGGTCCGTGTTTGGCT+CGG - chr4.2:24688415-24688434 MS.gene39646:CDS 65.0%
GGTGGAGGCGGAGACTACGT+TGG + chr4.2:24688143-24688162 None:intergenic 65.0%
! GCTGCTGCTGCTGCTTCCGA+TGG + chr4.2:24688209-24688228 None:intergenic 65.0%
! GCTGCTGCTGCTTCCGATGG+TGG + chr4.2:24688206-24688225 None:intergenic 65.0%
CCATCGAGTTCCGTGGGCCG+AGG - chr4.2:24688485-24688504 MS.gene39646:CDS 70.0%
CCTCGGCCCACGGAACTCGA+TGG + chr4.2:24688488-24688507 None:intergenic 70.0%
TCTGGCAGCTTCCTCCGCCG+TGG + chr4.2:24688449-24688468 None:intergenic 70.0%
TGAGCTTGGCCCTCGGCCCA+CGG + chr4.2:24688498-24688517 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 24688061 24688765 24688061 ID=MS.gene39646
chr4.2 mRNA 24688061 24688765 24688061 ID=MS.gene39646.t1;Parent=MS.gene39646
chr4.2 exon 24688061 24688765 24688061 ID=MS.gene39646.t1.exon1;Parent=MS.gene39646.t1
chr4.2 CDS 24688061 24688765 24688061 ID=cds.MS.gene39646.t1;Parent=MS.gene39646.t1
Gene Sequence

>MS.gene39646

ATGAACAACTCCTCTTCCTCCTTCTCATCTACCACTCTCACCTCCGATCAAGAACAATCCGTCATTGTCACCGCCCTAACCAACGTAGTCTCCGCCTCCACCTCAACCGCAAATTCATTACCCGAATTTCATCTCCCGGATTCCACCATCGGAAGCAGCAGCAGCAGCAGCATAGAACGAATGGTTCCACCAACAAACATGGAAACCTGCGGTGAATGCAACATAGCAGGATGTTTAGGATGCAATTTCTTCTCTGAAGAGAACAAGAAAAAACAAAAGAGAGCTAAAAAGAAGTATAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCTGCTGAGATTCGTGACCCGAGACGTGCGGTCCGTGTTTGGCTCGGAACCTTTACCACGGCGGAGGAAGCTGCCAGAGCTTATGACAATGCAGCCATCGAGTTCCGTGGGCCGAGGGCCAAGCTCAATTTTCCACTTGTTGATGAATCCCTTAAGCATGTTGAGGAACCAGAAGTGATCGTTCCTTCTGAGCATGTAATAAAGGATGAGAATATGAATCAAGAGATGCAAATTGAAACAACGACGGGGTTTGGGAATAATAAGGATTGTGATTTTTTGGATAGTATTGAGAACGCTGATTTTCAACAATTTATGAGGTTTATGGAATTTTCTGGAGATTCTTCTGGTTCTAGGACAGGGAATACTTTTAATTAG
Protein sequence

>MS.gene39646.t1

MNNSSSSFSSTTLTSDQEQSVIVTALTNVVSASTSTANSLPEFHLPDSTIGSSSSSSIERMVPPTNMETCGECNIAGCLGCNFFSEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKHVEEPEVIVPSEHVIKDENMNQEMQIETTTGFGNNKDCDFLDSIENADFQQFMRFMEFSGDSSGSRTGNTFN