AlfalfaGEDB | MS.gene39688

M. sativa cultivar XinJiangDaYe / MS.gene39688

KEGG: K08237
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39688.t1	XP_013443947.1	91.2	468	41	0	1	468	1	468	1.10E-247	865.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39688.t1	Q9AR73	52.3	470	219	4	1	468	1	467	8.5e-140	498.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39688.t1	A0A072TKM2	91.2	468	41	0	1	468	1	468	8.0e-248	865.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05985	MS.gene39688	-0.839542	1.49E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39688.t1	MTR_8g009073	91.239	468	41	0	1	468	1	468	0.0	885
MS.gene39688.t1	MTR_8g009067	89.507	467	49	0	1	467	1	467	0.0	840
MS.gene39688.t1	MTR_8g008970	87.366	467	59	0	1	467	1	467	0.0	831
MS.gene39688.t1	MTR_8g008970	67.260	281	77	1	188	468	527	792	4.16e-123	377
MS.gene39688.t1	MTR_1g019510	76.546	469	107	2	1	468	1	467	0.0	729
MS.gene39688.t1	MTR_8g009055	72.979	470	125	2	1	468	1	470	0.0	704
MS.gene39688.t1	MTR_8g008990	72.881	472	124	3	1	468	1	472	0.0	701
MS.gene39688.t1	MTR_8g009063	71.277	470	133	1	1	468	8	477	0.0	689
MS.gene39688.t1	MTR_8g009050	72.128	470	129	2	1	468	1	470	0.0	686
MS.gene39688.t1	MTR_8g009073	93.215	339	23	0	130	468	1	339	0.0	658

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39688.t1	AT4G01070	50.215	466	227	4	3	465	5	468	4.30e-165	474
MS.gene39688.t1	AT1G01420	46.452	465	243	5	4	465	9	470	1.84e-152	442
MS.gene39688.t1	AT1G01420	46.352	466	244	5	3	465	5	467	2.91e-152	442
MS.gene39688.t1	AT1G01390	45.161	465	252	3	3	465	5	468	8.49e-147	428
MS.gene39688.t1	AT1G01390	45.259	464	251	3	4	465	23	485	1.52e-146	428
MS.gene39688.t1	AT4G01070	45.376	346	182	5	3	345	5	346	4.43e-99	301
MS.gene39688.t1	AT3G50740	36.743	479	265	13	6	461	7	470	9.90e-94	292
MS.gene39688.t1	AT2G18570	36.887	469	277	13	6	463	5	465	1.18e-89	281
MS.gene39688.t1	AT4G36770	38.013	463	246	14	5	446	3	445	2.54e-87	275
MS.gene39688.t1	AT5G66690	36.170	470	252	13	6	451	7	452	1.58e-86	273

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Find 106 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTGTCCTCAAAGTTA+AGG	0.440178	8.3:-79974872	None:intergenic
AAAGTACAGCTGATGTTTGA+TGG	0.389406	8.3:-79974742	None:intergenic
AAATCCGGTGATGATGCTAA+TGG	0.422774	8.3:+79975303	MS.gene39688:CDS
AACCCTGATGTTTATGCTGT+TGG	0.459273	8.3:+79975258	MS.gene39688:CDS
AACTCCAAAGACCTACCACA+AGG	0.704912	8.3:+79974778	MS.gene39688:CDS
AACTTTGAGGACACCCTTTG+TGG	0.391971	8.3:+79974876	MS.gene39688:CDS
AAGCATGTGACATGAAAGTA+TGG	0.442050	8.3:-79974664	None:intergenic
AAGGACTAAAAGTGGGACTG+AGG	0.651473	8.3:+79975751	MS.gene39688:CDS
AAGGGATGGTTATTCCATCA+TGG	0.515871	8.3:+79975574	MS.gene39688:CDS
AAGTGGCTATATCCAACACC+TGG	0.623193	8.3:-79974598	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTGCACATAAAGATGA+TGG	+	chr8.3:79975897-79975916	MS.gene39688:CDS	30.0%
AGCTTCCTAGAAATTGAAAA+AGG	+	chr8.3:79975201-79975220	MS.gene39688:CDS	30.0%
ATTGAAGAATTGGGAATAAG+TGG	-	chr8.3:79974618-79974637	None:intergenic	30.0%
CCAGAAGGTAAAAATTGTAA+AGG	-	chr8.3:79975531-79975550	None:intergenic	30.0%
CTATGAAATCCTTAACTTTG+AGG	+	chr8.3:79974863-79974882	MS.gene39688:CDS	30.0%
GAAACATACAAAACTGAACA+AGG	-	chr8.3:79975363-79975382	None:intergenic	30.0%
GCAAGAACAAATTAATGAGT+TGG	+	chr8.3:79975407-79975426	MS.gene39688:CDS	30.0%
TCTTGGAGAATTGAAGAATT+GGG	-	chr8.3:79974627-79974646	None:intergenic	30.0%
AAAGTACAGCTGATGTTTGA+TGG	-	chr8.3:79974745-79974764	None:intergenic	35.0%
AAGCATGTGACATGAAAGTA+TGG	-	chr8.3:79974667-79974686	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	79974568	79975974	79974568	ID=MS.gene39688
chr8.3	mRNA	79974568	79975974	79974568	ID=MS.gene39688.t1;Parent=MS.gene39688
chr8.3	exon	79974568	79975974	79974568	ID=MS.gene39688.t1.exon1;Parent=MS.gene39688.t1
chr8.3	CDS	79974568	79975974	79974568	ID=cds.MS.gene39688.t1;Parent=MS.gene39688.t1

Gene Sequence

>MS.gene39688

ATGGAGAAAACAATTCATATTGCAGTTGTTCCAGGTGTTGGATATAGCCACTTATTCCCAATTCTTCAATTCTCCAAGAGACTTGTTCAGCTTCATCCATACTTTCATGTCACATGCTTCATTCCCTCACTTGGTTCTCTCCCAACTGATTCAAAAACAATCCTTCAAACTCTTCCATCAAACATCAGCTGTACTTTTCTTTCACCAGTCAACTCCAAAGACCTACCACAAGGAATTGCTTTAGCTCTTCAACTTCAGCTCACACTAACTCACTCATTACCATCCATACATCAGGCTATGAAATCCTTAACTTTGAGGACACCCTTTGTGGCCTTGGTGGTTGATTCTTTTGCTATTGAAGCACTAGATTTGGCTAAAGAGTTCAACATGTTGTCCTATGTTTACTTTCCTGCTTCAGTCACCACTTTGTCTTCATACTTCTATTTACTCAAGTTGAATAAGGAAACATCATGTGAGTACAGAGATCTTCCAGAGCCTATTCAAATACCAGGCTGTGTACCAATTCATGGTCGGGATCTTGTTGACCTAGCTCAAGATAGATCATGTCAATCTTACAAATTCTTAGTTCAACGTGTTGAAAAATTCCGTCTTTTTGATGGTATTCTTATTAATAGCTTCCTAGAAATTGAAAAAGGTCCTATAGAAGCACTCACAGAAGAAGGAAATGGCAACCCTGATGTTTATGCTGTTGGACCAATTATCCAAACGCCAACCAAATCCGGTGATGATGCTAATGGGTTGAAGTGTCTGACATGGTTGGACAAACAGCAACCTTGTTCAGTTTTGTATGTTTCTTTTGGGAGTGGTGGCACACTTTCGCAAGAACAAATTAATGAGTTGGCTTTGGGTTTGGAATTGAGTAATCATAAATTCTTATGGGTTGTGAGATCACCAAGTAGTACAGCCAATGCTGCATATCTTTCAGCATCTGATGTTGACCCTTTACAATTTTTACCTTCTGGGTTCTTAGAGAGAACAAAGGAACAAGGGATGGTTATTCCATCATGGGCACCACAGATTCAAATCCTTCGTCACAGTTCAGTTGGTGGGTTCTTGACTCACTGTGGTTGGAATTCAACGCTTGAGAGTGTGTTGCATGGTGTGCCACTAATCACATGGCCTCTATTTGCTGAGCAGAGAACGAATGCGGTTTTGCTGAGTGAAGGACTAAAAGTGGGACTGAGGCCAAAAGTTAATCAGAATGGCATTGTGGAAAAGGTACAAATTGCAGAGTTAATCAAGTGTCTCATGGAAGGGGAAGAAGGTGGGAAACTGCGCAAAAATATGAAGGAATTGAAAGAAGCTGCTAATAGTGCACATAAAGATGATGGATCTTCTACAATGACACTTTCTCAATTAGCACTCAAGTGGAGAAATATGGTATAG

Protein sequence

>MS.gene39688.t1

MEKTIHIAVVPGVGYSHLFPILQFSKRLVQLHPYFHVTCFIPSLGSLPTDSKTILQTLPSNISCTFLSPVNSKDLPQGIALALQLQLTLTHSLPSIHQAMKSLTLRTPFVALVVDSFAIEALDLAKEFNMLSYVYFPASVTTLSSYFYLLKLNKETSCEYRDLPEPIQIPGCVPIHGRDLVDLAQDRSCQSYKFLVQRVEKFRLFDGILINSFLEIEKGPIEALTEEGNGNPDVYAVGPIIQTPTKSGDDANGLKCLTWLDKQQPCSVLYVSFGSGGTLSQEQINELALGLELSNHKFLWVVRSPSSTANAAYLSASDVDPLQFLPSGFLERTKEQGMVIPSWAPQIQILRHSSVGGFLTHCGWNSTLESVLHGVPLITWPLFAEQRTNAVLLSEGLKVGLRPKVNQNGIVEKVQIAELIKCLMEGEEGGKLRKNMKELKEAANSAHKDDGSSTMTLSQLALKWRNMV