Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39693.t1 | XP_003626780.2 | 95.2 | 1037 | 48 | 2 | 1 | 1037 | 1 | 1035 | 0.00E+00 | 1838.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39693.t1 | F4K3G5 | 42.4 | 976 | 443 | 12 | 26 | 979 | 29 | 907 | 1.7e-204 | 714.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39693.t1 | G7LCK5 | 95.2 | 1037 | 48 | 2 | 1 | 1037 | 1 | 1035 | 0.0e+00 | 1838.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene39693 | 0.802414 | 5.67E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene39693 | 0.801173 | 1.02E-48 | -1.69E-46 |
| MS.gene060519 | MS.gene39693 | 0.805434 | 1.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39693.t1 | MTR_8g009000 | 94.220 | 1038 | 56 | 4 | 1 | 1037 | 1 | 1035 | 0.0 | 1892 |
| MS.gene39693.t1 | MTR_3g055370 | 49.048 | 683 | 303 | 9 | 311 | 975 | 228 | 883 | 0.0 | 673 |
| MS.gene39693.t1 | MTR_3g055370 | 48.276 | 174 | 88 | 1 | 1 | 172 | 1 | 174 | 9.87e-41 | 164 |
| MS.gene39693.t1 | MTR_5g094150 | 45.421 | 273 | 121 | 5 | 268 | 534 | 192 | 442 | 4.28e-73 | 264 |
| MS.gene39693.t1 | MTR_5g094150 | 35.000 | 220 | 121 | 3 | 15 | 228 | 23 | 226 | 1.12e-33 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39693.t1 | AT5G55390 | 49.570 | 698 | 308 | 9 | 313 | 979 | 223 | 907 | 0.0 | 642 |
| MS.gene39693.t1 | AT5G55390 | 39.884 | 173 | 104 | 0 | 5 | 177 | 8 | 180 | 3.90e-35 | 146 |
| MS.gene39693.t1 | AT5G55390 | 49.570 | 698 | 308 | 9 | 313 | 979 | 223 | 907 | 0.0 | 642 |
| MS.gene39693.t1 | AT5G55390 | 39.884 | 173 | 104 | 0 | 5 | 177 | 8 | 180 | 3.90e-35 | 146 |
| MS.gene39693.t1 | AT5G55390 | 49.570 | 698 | 308 | 9 | 313 | 979 | 223 | 907 | 0.0 | 642 |
| MS.gene39693.t1 | AT5G55390 | 39.884 | 173 | 104 | 0 | 5 | 177 | 8 | 180 | 3.90e-35 | 146 |
| MS.gene39693.t1 | AT5G48090 | 52.038 | 319 | 146 | 4 | 674 | 989 | 304 | 618 | 1.47e-101 | 333 |
| MS.gene39693.t1 | AT5G48090 | 41.463 | 246 | 113 | 8 | 308 | 533 | 26 | 260 | 8.14e-49 | 185 |
| MS.gene39693.t1 | AT5G48090 | 52.038 | 319 | 146 | 4 | 674 | 989 | 304 | 618 | 1.47e-101 | 333 |
| MS.gene39693.t1 | AT5G48090 | 41.463 | 246 | 113 | 8 | 308 | 533 | 26 | 260 | 8.14e-49 | 185 |
| MS.gene39693.t1 | AT5G48090 | 52.038 | 319 | 146 | 4 | 674 | 989 | 345 | 659 | 2.61e-101 | 333 |
| MS.gene39693.t1 | AT5G48090 | 41.463 | 246 | 113 | 8 | 308 | 533 | 67 | 301 | 6.35e-49 | 186 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTTTGTTTACATAATT+TGG | 0.077838 | 8.3:-80038975 | None:intergenic |
| AAGCTGGATATAATTTAATT+TGG | 0.144019 | 8.3:+80042767 | MS.gene39693:CDS |
| CGGATTCTGTTGATGGTTAT+TGG | 0.197150 | 8.3:+80035140 | MS.gene39693:CDS |
| CGTTATGCTATGCAGAATTT+TGG | 0.197920 | 8.3:+80039248 | MS.gene39693:intron |
| CATTTCCTGTGGTAAGCTTT+AGG | 0.210746 | 8.3:-80038254 | None:intergenic |
| CTCAAAAGCACTGAAATTTC+AGG | 0.222135 | 8.3:-80035340 | None:intergenic |
| TTTGGCTTCAATGTCTTATT+AGG | 0.224522 | 8.3:-80038786 | None:intergenic |
| TTCATCCAACCTTGGATTGC+AGG | 0.247224 | 8.3:-80039018 | None:intergenic |
| GAATAAATCATAGTTCTTAA+AGG | 0.251084 | 8.3:-80041692 | None:intergenic |
| CAGTCTTGGTTACAGTTTAT+TGG | 0.255754 | 8.3:+80035422 | MS.gene39693:CDS |
| AGTAGTCTTGCAACACATTC+AGG | 0.264300 | 8.3:-80038080 | None:intergenic |
| TAGGAATCACAAAATAGTTT+TGG | 0.266359 | 8.3:+80038632 | MS.gene39693:intron |
| ATGCTTTGCATGTGGCAAAT+TGG | 0.284462 | 8.3:+80037581 | MS.gene39693:CDS |
| CTTCACATATGATTATTATA+CGG | 0.289163 | 8.3:+80038440 | MS.gene39693:CDS |
| CCATCTGATATTTCCTAATA+AGG | 0.291365 | 8.3:+80038677 | MS.gene39693:CDS |
| ACAATAAGTATAAGGAGTTT+TGG | 0.291787 | 8.3:-80042423 | None:intergenic |
| GGTAAAGAGGCGGCGGCTTT+AGG | 0.297930 | 8.3:-80042967 | None:intergenic |
| ATTTCCTGTGGTAAGCTTTA+GGG | 0.301282 | 8.3:-80038253 | None:intergenic |
| AATGCTTTGAAAATACTATT+AGG | 0.302512 | 8.3:+80035398 | MS.gene39693:CDS |
| AAAATTCACAAACAGATTAT+AGG | 0.302580 | 8.3:+80035289 | MS.gene39693:CDS |
| ATAGGGCTGAATCCTCCTTT+TGG | 0.307113 | 8.3:+80042348 | MS.gene39693:CDS |
| AGCTGGATATAATTTAATTT+GGG | 0.326032 | 8.3:+80042768 | MS.gene39693:CDS |
| CAGTATTTGCTTAATTTCAT+TGG | 0.326301 | 8.3:+80036628 | MS.gene39693:intron |
| TCAGAGTGTTGAAGGAGTTT+AGG | 0.328100 | 8.3:+80035494 | MS.gene39693:CDS |
| AGCCGCCGCCTCTTTACCTT+TGG | 0.336139 | 8.3:+80042972 | MS.gene39693:CDS |
| AGAAGTGACAAATTATCTTA+TGG | 0.339899 | 8.3:+80043087 | MS.gene39693:CDS |
| TGATTAGTGAGGCTGTTAAA+AGG | 0.346439 | 8.3:+80035651 | MS.gene39693:CDS |
| GTGTATAATGATAATAATAA+AGG | 0.354461 | 8.3:+80043061 | MS.gene39693:CDS |
| AAAAGTTGAGGGTTCAGTTA+AGG | 0.367101 | 8.3:+80039389 | MS.gene39693:CDS |
| GGGTGGTTCTTCAAAAGTTA+TGG | 0.370133 | 8.3:+80038842 | MS.gene39693:CDS |
| CTTCTCTTTGTGTAATGATT+CGG | 0.371674 | 8.3:-80038724 | None:intergenic |
| TGCTTTGCATGTGGCAAATT+GGG | 0.375060 | 8.3:+80037582 | MS.gene39693:CDS |
| TTGAAAGTTGAAACCATGTC+TGG | 0.381855 | 8.3:+80038936 | MS.gene39693:CDS |
| TTGCATGGCACCACCGATAA+TGG | 0.382653 | 8.3:+80035259 | MS.gene39693:CDS |
| ATTGTTCCGGATTCTGTTGA+TGG | 0.392635 | 8.3:+80035133 | MS.gene39693:CDS |
| CCAGCCCTGTCAAAATAAAC+TGG | 0.399769 | 8.3:-80038906 | None:intergenic |
| GGAAAGAGTTGGTCTTCAAA+TGG | 0.402913 | 8.3:+80038821 | MS.gene39693:CDS |
| GGCAGGCGATATACTTCATT+TGG | 0.403008 | 8.3:+80040512 | MS.gene39693:CDS |
| GATTTGTCATTCTCCTCCTT+CGG | 0.409151 | 8.3:-80037072 | None:intergenic |
| TATTCTTGTCAGAGTGTTGA+AGG | 0.409471 | 8.3:+80035486 | MS.gene39693:CDS |
| TCAACTTCGAAAAGAGAGAT+TGG | 0.409661 | 8.3:+80042180 | MS.gene39693:CDS |
| TGTGGATAGAAAAGCAGATA+TGG | 0.410974 | 8.3:+80039127 | MS.gene39693:CDS |
| TTGGTACTTGACTAGATCAT+AGG | 0.413335 | 8.3:+80042330 | MS.gene39693:intron |
| TTCTAATGCAGATTGTTGAT+AGG | 0.413961 | 8.3:+80040978 | MS.gene39693:intron |
| TGAATCAGAGGAGGAGAATC+CGG | 0.417968 | 8.3:+80036804 | MS.gene39693:CDS |
| GGAGGATGATGAAATATGTT+CGG | 0.419704 | 8.3:+80042789 | MS.gene39693:CDS |
| TGAATCTCTACCATCCTCTA+TGG | 0.422559 | 8.3:-80037353 | None:intergenic |
| TTCACATATGATTATTATAC+GGG | 0.423190 | 8.3:+80038441 | MS.gene39693:CDS |
| AAATCAAAGCTTGAGCAGAC+TGG | 0.427403 | 8.3:+80041658 | MS.gene39693:CDS |
| ACCTTTGGAGTCGCCCTGAC+TGG | 0.428744 | 8.3:+80042987 | MS.gene39693:CDS |
| AACTTGTATTGACGGCTTGA+TGG | 0.430984 | 8.3:-80039323 | None:intergenic |
| TGAATCAGAGGAGGAGGATC+CGG | 0.432553 | 8.3:+80036888 | MS.gene39693:CDS |
| ATGTGCCAAGCAGTCCAGTC+AGG | 0.433235 | 8.3:-80043001 | None:intergenic |
| CAAGATACACATATGTCAAC+TGG | 0.436060 | 8.3:+80038882 | MS.gene39693:CDS |
| ATAGATACTCTTGATTCCTC+TGG | 0.437480 | 8.3:-80035466 | None:intergenic |
| ATTGGTTGCACTGTGTGAAA+TGG | 0.445572 | 8.3:+80035440 | MS.gene39693:CDS |
| GATGGTGTTCCAGATGATAA+TGG | 0.448731 | 8.3:+80043178 | MS.gene39693:CDS |
| ACCATGTCATTCTCCTTCTC+CGG | 0.451695 | 8.3:-80036946 | None:intergenic |
| GAGGATGATGAAATATGTTC+GGG | 0.452956 | 8.3:+80042790 | MS.gene39693:CDS |
| CAGTTGACATATGTGTATCT+TGG | 0.455952 | 8.3:-80038881 | None:intergenic |
| CGGGCATTGAGATGAGGGCT+TGG | 0.458201 | 8.3:+80038460 | MS.gene39693:CDS |
| AAACCATGTCTGGGTCAAAT+AGG | 0.458649 | 8.3:+80038946 | MS.gene39693:CDS |
| AGATTGTTGATAGGCTTCAT+TGG | 0.463030 | 8.3:+80040987 | MS.gene39693:intron |
| ATGTGTTCTTTATGCAGAAA+AGG | 0.463876 | 8.3:+80038182 | MS.gene39693:CDS |
| AACCTAGTTGCACCATTCTC+TGG | 0.466413 | 8.3:-80043211 | None:intergenic |
| CAATAACCATCAACAGAATC+CGG | 0.466643 | 8.3:-80035139 | None:intergenic |
| GAACGATGTTCTAAGTCATA+TGG | 0.468102 | 8.3:+80035625 | MS.gene39693:CDS |
| GATTCATTGTGTGCATCTCT+TGG | 0.468692 | 8.3:+80037370 | MS.gene39693:CDS |
| GAGACTCGAACTTGTATTGA+CGG | 0.469605 | 8.3:-80039331 | None:intergenic |
| GTCGCCCTGACTGGACTGCT+TGG | 0.469723 | 8.3:+80042996 | MS.gene39693:CDS |
| TTAGATGAAGAGCAAGATAT+CGG | 0.471191 | 8.3:+80037117 | MS.gene39693:CDS |
| ACAATGTCATTCTCCTGCTC+CGG | 0.471580 | 8.3:-80036823 | None:intergenic |
| ATCCTCTATGGTTGCATGGA+AGG | 0.472952 | 8.3:-80037341 | None:intergenic |
| TCCAGTAATGTACCTTAGCT+TGG | 0.473762 | 8.3:-80041714 | None:intergenic |
| TGAATCAGAGGAGGAGGATC+CGG | 0.476188 | 8.3:+80036846 | MS.gene39693:CDS |
| AGAGAACCCCTGACCCCAAA+AGG | 0.478785 | 8.3:-80042363 | None:intergenic |
| AGTTGAATCAGCAGAGGATC+CGG | 0.482227 | 8.3:+80036927 | MS.gene39693:CDS |
| CATGGTTGAATCAGCGGATG+AGG | 0.483740 | 8.3:+80037047 | MS.gene39693:CDS |
| ACCATGTCATTCTCCTCCTC+CGG | 0.489202 | 8.3:-80037030 | None:intergenic |
| TGAATCAGCAGAGGAGGAGC+CGG | 0.490575 | 8.3:+80036969 | MS.gene39693:CDS |
| TCTTGTCCAATGTCAATGCC+AGG | 0.491862 | 8.3:-80038107 | None:intergenic |
| GTTTGTGCAATTTGTGATAA+CGG | 0.492959 | 8.3:+80037150 | MS.gene39693:CDS |
| TGAATCAGCAGAGGAGGATC+CGG | 0.493289 | 8.3:+80037011 | MS.gene39693:CDS |
| GGGCATTGAGATGAGGGCTT+GGG | 0.494085 | 8.3:+80038461 | MS.gene39693:CDS |
| CACTAAAATAGATAAGTTGA+AGG | 0.495967 | 8.3:+80040544 | MS.gene39693:CDS |
| CTCTACCCTGGCATTGACAT+TGG | 0.497486 | 8.3:+80038101 | MS.gene39693:CDS |
| TTTCTAGTTTGACATTATTG+TGG | 0.502194 | 8.3:+80035194 | MS.gene39693:CDS |
| AAATACTATTAGGTCAGTCT+TGG | 0.503290 | 8.3:+80035408 | MS.gene39693:CDS |
| TTCCATGTTCAATGTAGAAG+TGG | 0.504131 | 8.3:-80039286 | None:intergenic |
| AGCAGAGGAGGAGCCGGAGG+AGG | 0.504343 | 8.3:+80036975 | MS.gene39693:CDS |
| ACCAAGTCATACTCCTCCTC+CGG | 0.509166 | 8.3:-80036988 | None:intergenic |
| TGAAATTTCAGGCTGCTCAC+AGG | 0.512940 | 8.3:-80035329 | None:intergenic |
| TATCGCCTGCCATGAAGAAA+AGG | 0.515530 | 8.3:-80040500 | None:intergenic |
| TTCCTAATAAGGAAGTCAAA+AGG | 0.515830 | 8.3:+80038688 | MS.gene39693:CDS |
| GAGAGATTGGATGAGTGTCC+AGG | 0.517107 | 8.3:+80042193 | MS.gene39693:CDS |
| CATTGTTGAATCAGAGGAGG+AGG | 0.518211 | 8.3:+80036840 | MS.gene39693:CDS |
| ACAATGTCACCATTATCATC+TGG | 0.518859 | 8.3:-80043187 | None:intergenic |
| CTTAGAACATCGTTCTCAGA+TGG | 0.522626 | 8.3:-80035617 | None:intergenic |
| TTATTGGTTTGAAAATGATA+AGG | 0.523165 | 8.3:+80035156 | MS.gene39693:CDS |
| GTAGTCTTGCAACACATTCA+GGG | 0.525072 | 8.3:-80038079 | None:intergenic |
| GATTGTTATCAGAATTACCC+TGG | 0.526050 | 8.3:+80043121 | MS.gene39693:CDS |
| AATCAAAGCTTGAGCAGACT+GGG | 0.527029 | 8.3:+80041659 | MS.gene39693:CDS |
| ACTATGTCATTCTCCTCCTC+CGG | 0.528501 | 8.3:-80036907 | None:intergenic |
| GAAAGAGTTGGTCTTCAAAT+GGG | 0.528505 | 8.3:+80038822 | MS.gene39693:CDS |
| TACATACCGTGTCACCACTC+TGG | 0.528549 | 8.3:-80041015 | None:intergenic |
| TATCTAGCTTCATCCAACCT+TGG | 0.530557 | 8.3:-80039026 | None:intergenic |
| TGGATATAATTTAATTTGGG+AGG | 0.532472 | 8.3:+80042771 | MS.gene39693:CDS |
| TGATACTCGAGATAAGCAAT+TGG | 0.532917 | 8.3:+80042934 | MS.gene39693:CDS |
| GAGATAAGCAATTGGAAGAC+TGG | 0.533706 | 8.3:+80042942 | MS.gene39693:CDS |
| TACCATCCTCTATGGTTGCA+TGG | 0.536750 | 8.3:-80037345 | None:intergenic |
| CTCTGGATTAGATGATTCAT+CGG | 0.538118 | 8.3:-80037610 | None:intergenic |
| TGGTACTTGACTAGATCATA+GGG | 0.540863 | 8.3:+80042331 | MS.gene39693:intron |
| CTTACTCAAGGAAAAGTTGA+GGG | 0.542679 | 8.3:+80039378 | MS.gene39693:CDS |
| AGATGAAGGATGTAGTATTG+AGG | 0.544690 | 8.3:+80039565 | MS.gene39693:CDS |
| TTATACGGGCATTGAGATGA+GGG | 0.545289 | 8.3:+80038455 | MS.gene39693:CDS |
| TTGGATGAGTGTCCAGGCTG+AGG | 0.547206 | 8.3:+80042199 | MS.gene39693:CDS |
| CTCCAAAGGTAAAGAGGCGG+CGG | 0.548295 | 8.3:-80042974 | None:intergenic |
| AATATCAGATGGTCTCTAGC+AGG | 0.548379 | 8.3:-80038666 | None:intergenic |
| AGCAGAGGAGGATCCGGAGG+AGG | 0.550444 | 8.3:+80037017 | MS.gene39693:CDS |
| ACATCAAAATTCGTTTGTCA+AGG | 0.554603 | 8.3:-80038491 | None:intergenic |
| AGAGGAGGAGAATCCGGAGC+AGG | 0.556353 | 8.3:+80036810 | MS.gene39693:CDS |
| CTATGATTTATTCCAAGCTA+AGG | 0.556961 | 8.3:+80041702 | MS.gene39693:CDS |
| CCTTGTGTTACTGCAAATTG+TGG | 0.557969 | 8.3:+80038044 | MS.gene39693:CDS |
| CACAGATTTAACAAAATCCA+AGG | 0.559338 | 8.3:+80035676 | MS.gene39693:CDS |
| TATAGTTGAATCAGAGGAGG+AGG | 0.560632 | 8.3:+80036882 | MS.gene39693:CDS |
| GTAGAATTGAAGAAACAAGC+TGG | 0.565046 | 8.3:+80039069 | MS.gene39693:CDS |
| AAATGATATAGTTGAATCAG+AGG | 0.565147 | 8.3:+80036876 | MS.gene39693:CDS |
| AACAAGCTGGAAGAAGCCTC+CGG | 0.565164 | 8.3:+80039082 | MS.gene39693:CDS |
| CGACCTATTTGACCCAGACA+TGG | 0.565562 | 8.3:-80038949 | None:intergenic |
| AGAGGAGGAGGATCCGGAGG+AGG | 0.566997 | 8.3:+80036852 | MS.gene39693:CDS |
| AGAGGAGGAGGATCCGGAGG+AGG | 0.566997 | 8.3:+80036894 | MS.gene39693:CDS |
| TACCAGAGAATGGTGCAACT+AGG | 0.567299 | 8.3:+80043209 | MS.gene39693:CDS |
| TACCAACAGAAAAGATCTGT+TGG | 0.567495 | 8.3:+80039047 | MS.gene39693:CDS |
| AATGACAAATCTGACGGAGA+AGG | 0.568183 | 8.3:+80037084 | MS.gene39693:CDS |
| AGACTTGACAGAAAGAAAGC+TGG | 0.569958 | 8.3:+80042751 | MS.gene39693:intron |
| ATTATACGGGCATTGAGATG+AGG | 0.571604 | 8.3:+80038454 | MS.gene39693:CDS |
| GGGCGACTCCAAAGGTAAAG+AGG | 0.571925 | 8.3:-80042980 | None:intergenic |
| CCTTACAAGATTAGAACCAT+GGG | 0.572240 | 8.3:-80042228 | None:intergenic |
| ATGACTATAAAGGAAAGAGT+TGG | 0.572262 | 8.3:+80038810 | MS.gene39693:CDS |
| ATTGTTATCAGAATTACCCT+GGG | 0.572606 | 8.3:+80043122 | MS.gene39693:CDS |
| CATAAAGAACACATATGAAG+AGG | 0.573618 | 8.3:-80038173 | None:intergenic |
| CATGGGGTAATTCCTCAGCC+TGG | 0.573684 | 8.3:-80042211 | None:intergenic |
| TGAAAGTTGAAACCATGTCT+GGG | 0.575391 | 8.3:+80038937 | MS.gene39693:CDS |
| ATCCTTCCATGCAACCATAG+AGG | 0.575436 | 8.3:+80037339 | MS.gene39693:CDS |
| GAATGACATTGTTGAATCAG+AGG | 0.579316 | 8.3:+80036834 | MS.gene39693:CDS |
| AAAACTGATAGTTGAATCAG+AGG | 0.581637 | 8.3:+80036792 | MS.gene39693:CDS |
| ATCAGCAGAGGATCCGGAGA+AGG | 0.581853 | 8.3:+80036933 | MS.gene39693:CDS |
| GAAAGTCAAAACTTCACTTG+TGG | 0.583950 | 8.3:+80039109 | MS.gene39693:CDS |
| CCTTATTAGGAAATATCAGA+TGG | 0.584067 | 8.3:-80038677 | None:intergenic |
| GCTTTACAGAAGCTAGATGA+AGG | 0.585019 | 8.3:+80039551 | MS.gene39693:CDS |
| CTTGGTTGAATCAGCAGAGG+AGG | 0.585225 | 8.3:+80037005 | MS.gene39693:CDS |
| TCCAGTCAGGGCGACTCCAA+AGG | 0.587258 | 8.3:-80042988 | None:intergenic |
| TATACACATCATATTTGATG+TGG | 0.588573 | 8.3:-80043045 | None:intergenic |
| CGTATAATAATCATATGTGA+AGG | 0.588635 | 8.3:-80038439 | None:intergenic |
| ATCAGCAGAGGAGGAGCCGG+AGG | 0.589339 | 8.3:+80036972 | MS.gene39693:CDS |
| TGTGCCAAGCAGTCCAGTCA+GGG | 0.590115 | 8.3:-80043000 | None:intergenic |
| GCCGGAGGAGGAGTATGACT+TGG | 0.590582 | 8.3:+80036987 | MS.gene39693:CDS |
| CATGGTTGAATCAGCAGAGG+AGG | 0.591075 | 8.3:+80036963 | MS.gene39693:CDS |
| TGGCATTGACATTGGACAAG+AGG | 0.592006 | 8.3:+80038109 | MS.gene39693:CDS |
| GCCTTACAAGATTAGAACCA+TGG | 0.594045 | 8.3:-80042229 | None:intergenic |
| TTATTGGGTGCATGTAACCC+AGG | 0.597373 | 8.3:-80043139 | None:intergenic |
| TGCTAACAAATTTATCGACA+AGG | 0.599680 | 8.3:+80042386 | MS.gene39693:CDS |
| TTCACAAACAGATTATAGGA+TGG | 0.599705 | 8.3:+80035293 | MS.gene39693:CDS |
| TGATGAAATATGTTCGGGGA+AGG | 0.599865 | 8.3:+80042795 | MS.gene39693:CDS |
| CGAATCATTACACAAAGAGA+AGG | 0.601914 | 8.3:+80038725 | MS.gene39693:CDS |
| GAATGACATGGTTGAATCAG+CGG | 0.602145 | 8.3:+80037041 | MS.gene39693:CDS |
| ATGGCGTCATCAGATGAAGA+GGG | 0.603028 | 8.3:+80035106 | MS.gene39693:CDS |
| GGTGACATTGTACCAGAGAA+TGG | 0.604230 | 8.3:+80043199 | MS.gene39693:CDS |
| AATGGCGTCATCAGATGAAG+AGG | 0.606183 | 8.3:+80035105 | None:intergenic |
| TTTCGTAAGACCCTTACTCA+AGG | 0.607897 | 8.3:+80039366 | MS.gene39693:CDS |
| TTCCATGCAACCATAGAGGA+TGG | 0.607911 | 8.3:+80037343 | MS.gene39693:CDS |
| AGCCACTTCTACATTGAACA+TGG | 0.608667 | 8.3:+80039284 | MS.gene39693:CDS |
| TGATATAGTTGAATCAGAGG+AGG | 0.613672 | 8.3:+80036879 | MS.gene39693:CDS |
| AGTGACAAATTATCTTATGG+AGG | 0.617830 | 8.3:+80043090 | MS.gene39693:CDS |
| ATCAGCAGAGGAGGATCCGG+AGG | 0.619595 | 8.3:+80037014 | MS.gene39693:CDS |
| CTTGTCCAATGTCAATGCCA+GGG | 0.622225 | 8.3:-80038106 | None:intergenic |
| AGAGTTGGTCTTCAAATGGG+TGG | 0.625362 | 8.3:+80038825 | MS.gene39693:CDS |
| TCTCGAGTATCAACAGAACC+AGG | 0.626383 | 8.3:-80042923 | None:intergenic |
| TAACTTGCAGAAGCAGCTCA+AGG | 0.626966 | 8.3:+80040466 | MS.gene39693:intron |
| GAGGAGAATGACAAATCTGA+CGG | 0.630120 | 8.3:+80037078 | MS.gene39693:CDS |
| ATCAGCGGATGAGGATCCGA+AGG | 0.637562 | 8.3:+80037056 | MS.gene39693:CDS |
| TAAAATAGATAAGTTGAAGG+AGG | 0.640941 | 8.3:+80040547 | MS.gene39693:CDS |
| ATCAGAGGAGGAGGATCCGG+AGG | 0.641118 | 8.3:+80036849 | MS.gene39693:CDS |
| ATCAGAGGAGGAGGATCCGG+AGG | 0.641118 | 8.3:+80036891 | MS.gene39693:CDS |
| CCACAATTTGCAGTAACACA+AGG | 0.641329 | 8.3:-80038044 | None:intergenic |
| CCTTACTCAAGGAAAAGTTG+AGG | 0.647045 | 8.3:+80039377 | MS.gene39693:CDS |
| GAACCCCTGACCCCAAAAGG+AGG | 0.650269 | 8.3:-80042360 | None:intergenic |
| TGACATTGTTGAATCAGAGG+AGG | 0.650359 | 8.3:+80036837 | MS.gene39693:CDS |
| ACTGATAGTTGAATCAGAGG+AGG | 0.651805 | 8.3:+80036795 | MS.gene39693:CDS |
| GGCGTCATCAGATGAAGAGG+GGG | 0.653391 | 8.3:+80035108 | MS.gene39693:CDS |
| GTATGTCCAGAGTGGTGACA+CGG | 0.655527 | 8.3:+80041009 | MS.gene39693:CDS |
| AAGCATCAATGCTTTGCATG+TGG | 0.660582 | 8.3:+80037573 | MS.gene39693:CDS |
| TATTGGGTGCATGTAACCCA+GGG | 0.661128 | 8.3:-80043138 | None:intergenic |
| CAGGCTGAGGAATTACCCCA+TGG | 0.665892 | 8.3:+80042212 | MS.gene39693:CDS |
| GCTGCCCTAAAGCTTACCAC+AGG | 0.667202 | 8.3:+80038249 | MS.gene39693:CDS |
| CGATGAATCATCTAATCCAG+AGG | 0.667891 | 8.3:+80037611 | MS.gene39693:CDS |
| TCATATGGCATTGATTAGTG+AGG | 0.669536 | 8.3:+80035640 | MS.gene39693:CDS |
| TGACATAGTTGAATCAGCAG+AGG | 0.670337 | 8.3:+80036921 | MS.gene39693:CDS |
| AGCGGATGAGGATCCGAAGG+AGG | 0.671145 | 8.3:+80037059 | MS.gene39693:CDS |
| TTTCTGGAGACCATTATCGG+TGG | 0.671727 | 8.3:-80035269 | None:intergenic |
| TGACATGGTTGAATCAGCAG+AGG | 0.673792 | 8.3:+80036960 | MS.gene39693:CDS |
| TGACTTGGTTGAATCAGCAG+AGG | 0.678529 | 8.3:+80037002 | MS.gene39693:CDS |
| TGGCGTCATCAGATGAAGAG+GGG | 0.678537 | 8.3:+80035107 | MS.gene39693:CDS |
| GTTGCAAGACTACTCTACCC+TGG | 0.683820 | 8.3:+80038089 | MS.gene39693:CDS |
| ACTTGGGCAAGCATTTCCTG+TGG | 0.687831 | 8.3:-80038265 | None:intergenic |
| CGACTCCAAAGGTAAAGAGG+CGG | 0.691277 | 8.3:-80042977 | None:intergenic |
| TCCGGAGAAGGAGAATGACA+TGG | 0.692204 | 8.3:+80036945 | MS.gene39693:CDS |
| TCCGGAGGAGGAGAATGACA+TGG | 0.692204 | 8.3:+80037029 | MS.gene39693:CDS |
| CTTCATTGGTATGTCCAGAG+TGG | 0.700286 | 8.3:+80041001 | MS.gene39693:CDS |
| TGTGCAATTTGTGATAACGG+TGG | 0.721239 | 8.3:+80037153 | MS.gene39693:CDS |
| GTCTTGCAACACATTCAGGG+TGG | 0.743136 | 8.3:-80038076 | None:intergenic |
| CTGTGTGAAATGGAAACCAG+AGG | 0.744549 | 8.3:+80035450 | MS.gene39693:CDS |
| TTCAAATGAAGACTTCCATG+CGG | 0.749029 | 8.3:+80036660 | MS.gene39693:CDS |
| AGGATGATGAAATATGTTCG+GGG | 0.755205 | 8.3:+80042791 | MS.gene39693:CDS |
| CTTACAAGATTAGAACCATG+GGG | 0.785137 | 8.3:-80042227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 80035106 | 80043240 | 80035106 | ID=MS.gene39693 |
| chr8.3 | mRNA | 80035106 | 80043240 | 80035106 | ID=MS.gene39693.t1;Parent=MS.gene39693 |
| chr8.3 | exon | 80035106 | 80035515 | 80035106 | ID=MS.gene39693.t1.exon1;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80035106 | 80035515 | 80035106 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80035601 | 80035697 | 80035601 | ID=MS.gene39693.t1.exon2;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80035601 | 80035697 | 80035601 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80036631 | 80036681 | 80036631 | ID=MS.gene39693.t1.exon3;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80036631 | 80036681 | 80036631 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80036769 | 80037187 | 80036769 | ID=MS.gene39693.t1.exon4;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80036769 | 80037187 | 80036769 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80037318 | 80037414 | 80037318 | ID=MS.gene39693.t1.exon5;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80037318 | 80037414 | 80037318 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80037534 | 80037632 | 80037534 | ID=MS.gene39693.t1.exon6;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80037534 | 80037632 | 80037534 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80038038 | 80038285 | 80038038 | ID=MS.gene39693.t1.exon7;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80038038 | 80038285 | 80038038 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80038431 | 80038520 | 80038431 | ID=MS.gene39693.t1.exon8;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80038431 | 80038520 | 80038431 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80038635 | 80039156 | 80038635 | ID=MS.gene39693.t1.exon9;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80038635 | 80039156 | 80038635 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80039263 | 80039410 | 80039263 | ID=MS.gene39693.t1.exon10;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80039263 | 80039410 | 80039263 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80039539 | 80039640 | 80039539 | ID=MS.gene39693.t1.exon11;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80039539 | 80039640 | 80039539 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80040476 | 80040568 | 80040476 | ID=MS.gene39693.t1.exon12;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80040476 | 80040568 | 80040476 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80040989 | 80041030 | 80040989 | ID=MS.gene39693.t1.exon13;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80040989 | 80041030 | 80040989 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80041613 | 80041723 | 80041613 | ID=MS.gene39693.t1.exon14;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80041613 | 80041723 | 80041613 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80042173 | 80042244 | 80042173 | ID=MS.gene39693.t1.exon15;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80042173 | 80042244 | 80042173 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80042345 | 80042463 | 80042345 | ID=MS.gene39693.t1.exon16;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80042345 | 80042463 | 80042345 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80042753 | 80042816 | 80042753 | ID=MS.gene39693.t1.exon17;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80042753 | 80042816 | 80042753 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| chr8.3 | exon | 80042911 | 80043240 | 80042911 | ID=MS.gene39693.t1.exon18;Parent=MS.gene39693.t1 |
| chr8.3 | CDS | 80042911 | 80043240 | 80042911 | ID=cds.MS.gene39693.t1;Parent=MS.gene39693.t1 |
| Gene Sequence |
| Protein sequence |
