Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39756.t1 | XP_003608130.2 | 92.3 | 272 | 17 | 1 | 1 | 268 | 1 | 272 | 2.80E-131 | 478 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39756.t1 | Q9S7Y1 | 38.9 | 180 | 103 | 4 | 57 | 233 | 160 | 335 | 3.4e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39756.t1 | G7JPQ2 | 92.3 | 272 | 17 | 1 | 1 | 268 | 1 | 272 | 2.0e-131 | 478.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39756.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056923 | MS.gene39756 | 0.802137 | 6.47E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39756.t1 | MTR_4g087920 | 91.892 | 259 | 17 | 1 | 1 | 255 | 1 | 259 | 4.67e-165 | 458 |
| MS.gene39756.t1 | MTR_2g015890 | 55.118 | 254 | 102 | 4 | 19 | 268 | 11 | 256 | 2.87e-82 | 248 |
| MS.gene39756.t1 | MTR_2g015890 | 47.244 | 254 | 82 | 5 | 19 | 268 | 11 | 216 | 1.41e-59 | 188 |
| MS.gene39756.t1 | MTR_2g015890 | 58.182 | 165 | 62 | 2 | 104 | 268 | 1 | 158 | 3.49e-58 | 183 |
| MS.gene39756.t1 | MTR_2g091190 | 45.714 | 210 | 109 | 4 | 30 | 238 | 21 | 226 | 1.67e-45 | 153 |
| MS.gene39756.t1 | MTR_4g079760 | 38.224 | 259 | 151 | 7 | 1 | 258 | 1 | 251 | 1.15e-39 | 139 |
| MS.gene39756.t1 | MTR_2g015890 | 46.061 | 165 | 42 | 3 | 104 | 268 | 1 | 118 | 1.37e-35 | 124 |
| MS.gene39756.t1 | MTR_3g070970 | 34.673 | 199 | 110 | 7 | 65 | 253 | 67 | 255 | 1.40e-28 | 110 |
| MS.gene39756.t1 | MTR_1g093750 | 41.667 | 180 | 94 | 5 | 57 | 232 | 144 | 316 | 3.49e-25 | 102 |
| MS.gene39756.t1 | MTR_5g032375 | 31.737 | 167 | 97 | 4 | 69 | 223 | 43 | 204 | 1.75e-15 | 73.6 |
| MS.gene39756.t1 | MTR_5g066080 | 33.000 | 200 | 91 | 4 | 64 | 230 | 30 | 219 | 2.63e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39756.t1 | AT3G56770 | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 6.21e-30 | 112 |
| MS.gene39756.t1 | AT2G40200 | 41.667 | 132 | 73 | 2 | 73 | 201 | 65 | 195 | 2.69e-27 | 106 |
| MS.gene39756.t1 | AT1G68810 | 34.884 | 258 | 152 | 8 | 5 | 251 | 98 | 350 | 3.26e-24 | 100 |
| MS.gene39756.t1 | AT2G41130 | 36.932 | 176 | 103 | 4 | 63 | 236 | 59 | 228 | 9.03e-24 | 97.1 |
| MS.gene39756.t1 | AT3G25710 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 1.22e-20 | 90.1 |
Find 54 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4.4:+25053902 | None:intergenic |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4.4:-25056780 | MS.gene39756:CDS |
| GAACCATATGATACTAAATT+AGG | 0.319188 | 4.4:-25054208 | MS.gene39756:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4.4:-25056786 | MS.gene39756:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4.4:-25056644 | MS.gene39756:CDS |
| TATGATACTAAATTAGGATA+TGG | 0.351083 | 4.4:-25054202 | MS.gene39756:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4.4:-25056824 | MS.gene39756:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4.4:+25054235 | None:intergenic |
| TATCCTAATTTAGTATCATA+TGG | 0.402521 | 4.4:+25054205 | None:intergenic |
| TTGAGGTCACATAGTATCTC+AGG | 0.408328 | 4.4:+25054139 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4.4:-25053913 | MS.gene39756:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4.4:-25056658 | MS.gene39756:CDS |
| TTCTCCTCTCTGCTTCCCTA+TGG | 0.451668 | 4.4:+25056663 | None:intergenic |
| TTGTGTTTACATGTTGTAAA+GGG | 0.470424 | 4.4:-25054039 | MS.gene39756:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4.4:-25053963 | MS.gene39756:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4.4:-25053969 | MS.gene39756:CDS |
| TAGCTTCTTTGAAGAACCAT+AGG | 0.484232 | 4.4:-25056679 | MS.gene39756:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4.4:-25056834 | MS.gene39756:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4.4:-25056657 | MS.gene39756:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4.4:-25053948 | MS.gene39756:CDS |
| TGTAGCTTCCACTCATCAAA+AGG | 0.507874 | 4.4:-25056597 | MS.gene39756:intron |
| TTTGTGTTTACATGTTGTAA+AGG | 0.510071 | 4.4:-25054040 | MS.gene39756:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4.4:-25054075 | MS.gene39756:CDS |
| CATGCATCTTGTTCATGCTA+AGG | 0.515195 | 4.4:-25053848 | None:intergenic |
| GAATGAGAAGGAAAAGGTGG+TGG | 0.516295 | 4.4:-25056756 | MS.gene39756:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4.4:-25056812 | MS.gene39756:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4.4:-25053981 | MS.gene39756:CDS |
| GATGATGTTTCTGAGGTGAA+AGG | 0.532394 | 4.4:-25056704 | MS.gene39756:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.540805 | 4.4:-25056762 | MS.gene39756:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4.4:-25054083 | MS.gene39756:CDS |
| ATGCATCTTGTTCATGCTAA+GGG | 0.564588 | 4.4:-25053847 | None:intergenic |
| GAGAGAATAAATGGTCACCT+TGG | 0.565872 | 4.4:-25056635 | MS.gene39756:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4.4:-25056735 | MS.gene39756:CDS |
| AGGGAATAGTATTAATGTTG+AGG | 0.576930 | 4.4:-25054020 | MS.gene39756:CDS |
| GGAATTAAAGAAGAATGCAA+TGG | 0.577626 | 4.4:-25054281 | MS.gene39756:CDS |
| AGCTTCTTTGAAGAACCATA+GGG | 0.592888 | 4.4:-25056678 | MS.gene39756:CDS |
| AGATGCATGGCTGCATGAAG+AGG | 0.593504 | 4.4:+25053862 | None:intergenic |
| AATCACTTCAGCAAGTATTG+TGG | 0.602708 | 4.4:+25054315 | None:intergenic |
| GGAGAATGAGAAGGAAAAGG+TGG | 0.603497 | 4.4:-25056759 | MS.gene39756:CDS |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4.4:-25056731 | MS.gene39756:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4.4:-25053987 | MS.gene39756:CDS |
| CAAGACCACGTAATGTTCCA+AGG | 0.609560 | 4.4:+25056618 | None:intergenic |
| TGAAGTGATTAGTCAAGTGA+AGG | 0.620505 | 4.4:-25054302 | MS.gene39756:CDS |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4.4:+25056776 | None:intergenic |
| TGGTGGTGATGACAATCCAT+TGG | 0.624935 | 4.4:+25056796 | None:intergenic |
| AGGTTGGTAATCACAGCAGA+TGG | 0.628119 | 4.4:+25054159 | None:intergenic |
| CTTAGCATGAACAAGATGCA+TGG | 0.629347 | 4.4:+25053849 | None:intergenic |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4.4:-25054101 | MS.gene39756:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4.4:-25054268 | MS.gene39756:CDS |
| TGGTAAAGATGATGTTTCTG+AGG | 0.646156 | 4.4:-25056711 | MS.gene39756:CDS |
| GGTCACATAGTATCTCAGGT+TGG | 0.666963 | 4.4:+25054143 | None:intergenic |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4.4:+25056779 | None:intergenic |
| GGTCACCTTGGAACATTACG+TGG | 0.700048 | 4.4:-25056623 | MS.gene39756:CDS |
| AGAACCATAGGGAAGCAGAG+AGG | 0.739044 | 4.4:-25056667 | MS.gene39756:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr4.4:25054555-25054574 | MS.gene39756:intron | 10.0% |
| !! | CATTATTGTAATTAAATTAA+GGG | - | chr4.4:25055313-25055332 | MS.gene39756:intron | 10.0% |
| !! | GATGATTATAATATTAATAT+AGG | + | chr4.4:25055986-25056005 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr4.4:25054554-25054573 | MS.gene39756:intron | 10.0% |
| !!! | AATTATATATTTTTTTTGGA+AGG | + | chr4.4:25056319-25056338 | None:intergenic | 10.0% |
| !!! | ATTATATATTTTTTTTGGAA+GGG | + | chr4.4:25056318-25056337 | None:intergenic | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | + | chr4.4:25055131-25055150 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | - | chr4.4:25055236-25055255 | MS.gene39756:intron | 10.0% |
| !! | AAAAATAAACACAAACTAAA+AGG | + | chr4.4:25054966-25054985 | None:intergenic | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | - | chr4.4:25054579-25054598 | MS.gene39756:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr4.4:25054556-25054575 | MS.gene39756:intron | 15.0% |
| !! | ATTATTATTATCCAAATCTA+TGG | - | chr4.4:25054378-25054397 | MS.gene39756:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr4.4:25054620-25054639 | MS.gene39756:intron | 15.0% |
| !! | GCATTATTGTAATTAAATTA+AGG | - | chr4.4:25055312-25055331 | MS.gene39756:intron | 15.0% |
| !! | TAAATAAGCATTAAGAAATA+AGG | + | chr4.4:25055185-25055204 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr4.4:25054619-25054638 | MS.gene39756:intron | 15.0% |
| !! | TTATTATTATCCAAATCTAT+GGG | - | chr4.4:25054379-25054398 | MS.gene39756:intron | 15.0% |
| !!! | TCATGATATTAGTATTTTTA+TGG | - | chr4.4:25055470-25055489 | MS.gene39756:intron | 15.0% |
| !!! | TTCTAATTGTAAAATTTGTT+TGG | - | chr4.4:25054219-25054238 | MS.gene39756:CDS | 15.0% |
| !! | AGATAACACATATATGATAT+CGG | - | chr4.4:25055029-25055048 | MS.gene39756:intron | 20.0% |
| !! | ATTCAATATCAAAATTCTGA+TGG | + | chr4.4:25054914-25054933 | None:intergenic | 20.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | - | chr4.4:25054742-25054761 | MS.gene39756:intron | 20.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | - | chr4.4:25054578-25054597 | MS.gene39756:intron | 20.0% |
| !! | GACTAAATTAAGTTCAAATA+TGG | - | chr4.4:25056101-25056120 | MS.gene39756:intron | 20.0% |
| !! | TATCCTAATTTAGTATCATA+TGG | + | chr4.4:25056532-25056551 | None:intergenic | 20.0% |
| !! | TATGATACTAAATTAGGATA+TGG | - | chr4.4:25056532-25056551 | MS.gene39756:intron | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | - | chr4.4:25054743-25054762 | MS.gene39756:intron | 20.0% |
| !!! | CAAATATAGTTTTGGTTTTT+AGG | - | chr4.4:25054773-25054792 | MS.gene39756:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr4.4:25054689-25054708 | MS.gene39756:intron | 20.0% |
| !!! | TTGTTGTCTTATTTCTATAA+TGG | - | chr4.4:25055850-25055869 | MS.gene39756:intron | 20.0% |
| !!! | TTTTTTACGGTAATAATACA+TGG | - | chr4.4:25056163-25056182 | MS.gene39756:intron | 20.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | + | chr4.4:25055835-25055854 | None:intergenic | 25.0% |
| ! | AACACAAACTAAAAGGATAT+TGG | + | chr4.4:25054959-25054978 | None:intergenic | 25.0% |
| ! | AAGAAATAAGGAAATGCTAA+GGG | + | chr4.4:25055173-25055192 | None:intergenic | 25.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | - | chr4.4:25053910-25053929 | MS.gene39756:CDS | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | + | chr4.4:25055292-25055311 | None:intergenic | 25.0% |
| ! | AGGTGAGAATCAAATATAAT+TGG | - | chr4.4:25054845-25054864 | MS.gene39756:intron | 25.0% |
| ! | ATATTGCATAAAACATACGT+AGG | - | chr4.4:25054282-25054301 | MS.gene39756:CDS | 25.0% |
| ! | ATTCAAGACAATGTTATCAA+AGG | - | chr4.4:25056064-25056083 | MS.gene39756:intron | 25.0% |
| ! | GAACCATATGATACTAAATT+AGG | - | chr4.4:25056526-25056545 | MS.gene39756:intron | 25.0% |
| ! | GACAACAAATAAAGATAAGA+TGG | + | chr4.4:25055838-25055857 | None:intergenic | 25.0% |
| ! | GGTGAGAATCAAATATAATT+GGG | - | chr4.4:25054846-25054865 | MS.gene39756:intron | 25.0% |
| ! | TAAGAAATAAGGAAATGCTA+AGG | + | chr4.4:25055174-25055193 | None:intergenic | 25.0% |
| ! | TAATAAATCAACTCAGTTGT+TGG | - | chr4.4:25056018-25056037 | MS.gene39756:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+GGG | + | chr4.4:25055512-25055531 | None:intergenic | 25.0% |
| ! | TTAATGAATGATTTCCAGTT+TGG | + | chr4.4:25055513-25055532 | None:intergenic | 25.0% |
| ! | TTGTGTTTACATGTTGTAAA+GGG | - | chr4.4:25056695-25056714 | MS.gene39756:CDS | 25.0% |
| ! | TTTGTGTTTACATGTTGTAA+AGG | - | chr4.4:25056694-25056713 | MS.gene39756:CDS | 25.0% |
| !! | AGTTTAAGTTTGAACAAAGA+TGG | - | chr4.4:25054802-25054821 | MS.gene39756:intron | 25.0% |
| !! | ATATACTTTTGTTCATGTCA+TGG | + | chr4.4:25055588-25055607 | None:intergenic | 25.0% |
| !! | ATGGTTCATTACATTTTAGA+TGG | - | chr4.4:25056390-25056409 | MS.gene39756:intron | 25.0% |
| !! | TATTTCTATAATGGTGATGT+GGG | - | chr4.4:25055859-25055878 | MS.gene39756:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr4.4:25054666-25054685 | MS.gene39756:intron | 25.0% |
| !! | TTTTATGGTTTCTTCTTCTA+TGG | - | chr4.4:25055485-25055504 | MS.gene39756:intron | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | + | chr4.4:25056018-25056037 | None:intergenic | 25.0% |
| !!! | ATATTAATATAGGAGTACTG+AGG | + | chr4.4:25055976-25055995 | None:intergenic | 25.0% |
| !!! | ATGTGTTGAATTTGATTTTG+TGG | - | chr4.4:25056363-25056382 | MS.gene39756:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr4.4:25054688-25054707 | MS.gene39756:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr4.4:25054667-25054686 | MS.gene39756:intron | 25.0% |
| !!! | TGTGTTGAATTTGATTTTGT+GGG | - | chr4.4:25056364-25056383 | MS.gene39756:intron | 25.0% |
| !!! | TTATTTCTATAATGGTGATG+TGG | - | chr4.4:25055858-25055877 | MS.gene39756:intron | 25.0% |
| AAATATAATTGGGTACCTGA+GGG | - | chr4.4:25054856-25054875 | MS.gene39756:intron | 30.0% | |
| ACACTTCACAATCAAATTGA+AGG | - | chr4.4:25054317-25054336 | MS.gene39756:CDS | 30.0% | |
| ACTAATCACGTTCAAATATG+TGG | - | chr4.4:25056219-25056238 | MS.gene39756:intron | 30.0% | |
| AGGGAATAGTATTAATGTTG+AGG | - | chr4.4:25056714-25056733 | MS.gene39756:CDS | 30.0% | |
| CAAAAAGAACAATGAAAGCA+AGG | + | chr4.4:25054179-25054198 | None:intergenic | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | - | chr4.4:25056821-25056840 | MS.gene39756:CDS | 30.0% | |
| GGAATTAAAGAAGAATGCAA+TGG | - | chr4.4:25056453-25056472 | MS.gene39756:intron | 30.0% | |
| GTGCAATTATATATCCCATA+TGG | - | chr4.4:25055433-25055452 | MS.gene39756:intron | 30.0% | |
| TATTGCAAATGTTGTTCACA+AGG | - | chr4.4:25056747-25056766 | MS.gene39756:CDS | 30.0% | |
| TCAATTTGATTGTGAAGTGT+CGG | + | chr4.4:25054317-25054336 | None:intergenic | 30.0% | |
| TGATTTATTAAGGTGGATGA+AGG | + | chr4.4:25056008-25056027 | None:intergenic | 30.0% | |
| TTTGGAAGGGAAAAAATTGT+TGG | + | chr4.4:25056305-25056324 | None:intergenic | 30.0% | |
| ! | AAATTATCAAAGAGCGTGAA+AGG | + | chr4.4:25055225-25055244 | None:intergenic | 30.0% |
| ! | AATTATCAAAGAGCGTGAAA+GGG | + | chr4.4:25055224-25055243 | None:intergenic | 30.0% |
| ! | ATTTCTATAATGGTGATGTG+GGG | - | chr4.4:25055860-25055879 | MS.gene39756:intron | 30.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | - | chr4.4:25053900-25053919 | MS.gene39756:CDS | 30.0% |
| ! | GTGAGGAACAAATATAGTTT+TGG | - | chr4.4:25054765-25054784 | MS.gene39756:intron | 30.0% |
| ! | TACTGATTGCTAAAGTCAAA+TGG | - | chr4.4:25055386-25055405 | MS.gene39756:intron | 30.0% |
| ! | TAGTAACCATGTCTCTTTTA+GGG | - | chr4.4:25054415-25054434 | MS.gene39756:intron | 30.0% |
| ! | TATTGACAATATTTTCCCTC+AGG | + | chr4.4:25054874-25054893 | None:intergenic | 30.0% |
| !! | AATTTGATTTTGTGGGTCAA+TGG | - | chr4.4:25056371-25056390 | MS.gene39756:intron | 30.0% |
| !! | ACTGAGTTGATTTATTAAGG+TGG | + | chr4.4:25056015-25056034 | None:intergenic | 30.0% |
| !! | CACTAATGTCAATTTTGACA+AGG | - | chr4.4:25055619-25055638 | MS.gene39756:intron | 30.0% |
| !!! | ATTGCTTTCAAGTTTTGTTG+TGG | - | chr4.4:25055722-25055741 | MS.gene39756:intron | 30.0% |
| !!! | GACAAGGTATTTTAACTTGA+TGG | - | chr4.4:25055635-25055654 | MS.gene39756:intron | 30.0% |
| !!! | GTGCATTAATTGCTTTTTTG+AGG | + | chr4.4:25056615-25056634 | None:intergenic | 30.0% |
| AAATGTCAACATTGGAAAGC+AGG | - | chr4.4:25056659-25056678 | MS.gene39756:CDS | 35.0% | |
| AAGAACAATGAAAGCAAGGA+AGG | + | chr4.4:25054175-25054194 | None:intergenic | 35.0% | |
| AATATGTGTGAAATGAGCCA+AGG | + | chr4.4:25054535-25054554 | None:intergenic | 35.0% | |
| ACGATATTGACCCATAGATT+TGG | + | chr4.4:25054392-25054411 | None:intergenic | 35.0% | |
| ACTTCAACTTCAACTAGTGA+AGG | - | chr4.4:25056633-25056652 | MS.gene39756:CDS | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr4.4:25054702-25054721 | MS.gene39756:intron | 35.0% | |
| AGAAGAAGGGAGAGAATAAA+TGG | - | chr4.4:25054090-25054109 | MS.gene39756:CDS | 35.0% | |
| AGATGGCAATACAAGCTTTA+AGG | - | chr4.4:25054819-25054838 | MS.gene39756:intron | 35.0% | |
| ATATGTGTGAAATGAGCCAA+GGG | + | chr4.4:25054534-25054553 | None:intergenic | 35.0% | |
| ATGTCATGGAGACTTAATCA+AGG | + | chr4.4:25055574-25055593 | None:intergenic | 35.0% | |
| CAAATATAATTGGGTACCTG+AGG | - | chr4.4:25054855-25054874 | MS.gene39756:intron | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | + | chr4.4:25056835-25056854 | None:intergenic | 35.0% | |
| CTTCACAATCAAATTGAAGG+TGG | - | chr4.4:25054320-25054339 | MS.gene39756:CDS | 35.0% | |
| GCATCATGGTTGTCATTATA+TGG | - | chr4.4:25055345-25055364 | MS.gene39756:intron | 35.0% | |
| GGAGGGAGTAATAGATTTAA+TGG | - | chr4.4:25054728-25054747 | MS.gene39756:intron | 35.0% | |
| TCTATAAAATGCATGTGCTG+TGG | - | chr4.4:25054465-25054484 | MS.gene39756:intron | 35.0% | |
| TCTTTACAAGTCTCGAGAAT+TGG | + | chr4.4:25055090-25055109 | None:intergenic | 35.0% | |
| TTCACTTCATCAACTTCTGT+TGG | + | chr4.4:25056502-25056521 | None:intergenic | 35.0% | |
| TTCTCCAAAACCAATGAATG+TGG | + | chr4.4:25053961-25053980 | None:intergenic | 35.0% | |
| TTTGGAGAATGAGAAGGAAA+AGG | - | chr4.4:25053972-25053991 | MS.gene39756:CDS | 35.0% | |
| ! | AACTCAGTTTGTTTGCCATA+TGG | + | chr4.4:25055451-25055470 | None:intergenic | 35.0% |
| ! | AAGACATACCTTTTGATGAG+TGG | + | chr4.4:25054148-25054167 | None:intergenic | 35.0% |
| ! | AATCACTTCAGCAAGTATTG+TGG | + | chr4.4:25056422-25056441 | None:intergenic | 35.0% |
| ! | ACTCAGTTTGTTTGCCATAT+GGG | + | chr4.4:25055450-25055469 | None:intergenic | 35.0% |
| ! | AGCTTCTTTGAAGAACCATA+GGG | - | chr4.4:25054056-25054075 | MS.gene39756:CDS | 35.0% |
| ! | CTAGTAACCATGTCTCTTTT+AGG | - | chr4.4:25054414-25054433 | MS.gene39756:intron | 35.0% |
| ! | TACCAACCTTTTCAGTAACA+GGG | + | chr4.4:25054008-25054027 | None:intergenic | 35.0% |
| ! | TAGCTTCTTTGAAGAACCAT+AGG | - | chr4.4:25054055-25054074 | MS.gene39756:CDS | 35.0% |
| ! | TGAAGTGATTAGTCAAGTGA+AGG | - | chr4.4:25056432-25056451 | MS.gene39756:intron | 35.0% |
| ! | TGGTAAAGATGATGTTTCTG+AGG | - | chr4.4:25054023-25054042 | MS.gene39756:CDS | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | + | chr4.4:25054009-25054028 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | - | chr4.4:25053966-25053985 | MS.gene39756:CDS | 35.0% |
| AAATGTTGTTCACAAGGCAC+TGG | - | chr4.4:25056753-25056772 | MS.gene39756:CDS | 40.0% | |
| AAGGGATTCTGATTGCATCA+TGG | - | chr4.4:25055331-25055350 | MS.gene39756:intron | 40.0% | |
| AATGCAATGGAAGCAAGCAA+AGG | - | chr4.4:25056466-25056485 | MS.gene39756:intron | 40.0% | |
| ATATCATCCAGAAGAACACC+TGG | + | chr4.4:25055753-25055772 | None:intergenic | 40.0% | |
| ATCAAGCCCTAAAAGAGACA+TGG | + | chr4.4:25054424-25054443 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | - | chr4.4:25054703-25054722 | MS.gene39756:intron | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | - | chr4.4:25056651-25056670 | MS.gene39756:CDS | 40.0% | |
| GAGAGAATAAATGGTCACCT+TGG | - | chr4.4:25054099-25054118 | MS.gene39756:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | - | chr4.4:25056786-25056805 | MS.gene39756:CDS | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | + | chr4.4:25055955-25055974 | None:intergenic | 40.0% | |
| TCCAAAACCAATGAATGTGG+TGG | + | chr4.4:25053958-25053977 | None:intergenic | 40.0% | |
| TGGAAAGTTGAAATTGGGTG+AGG | - | chr4.4:25054748-25054767 | MS.gene39756:intron | 40.0% | |
| TGTAGCTTCCACTCATCAAA+AGG | - | chr4.4:25054137-25054156 | MS.gene39756:CDS | 40.0% | |
| TTGAGGTCACATAGTATCTC+AGG | + | chr4.4:25056598-25056617 | None:intergenic | 40.0% | |
| ! | GTGATTAGTCATGTGTCACA+CGG | + | chr4.4:25056208-25056227 | None:intergenic | 40.0% |
| ! | TGATTAGTCATGTGTCACAC+GGG | + | chr4.4:25056207-25056226 | None:intergenic | 40.0% |
| !! | CAATACAAGCTTTAAGGCAG+AGG | - | chr4.4:25054825-25054844 | MS.gene39756:intron | 40.0% |
| !! | GATAACTTTGGAGCTTCCAA+TGG | - | chr4.4:25053922-25053941 | MS.gene39756:CDS | 40.0% |
| !! | GATGATGTTTCTGAGGTGAA+AGG | - | chr4.4:25054030-25054049 | MS.gene39756:CDS | 40.0% |
| !! | TATAGGAGTACTGAGGAAAG+AGG | + | chr4.4:25055969-25055988 | None:intergenic | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | - | chr4.4:25053954-25053973 | MS.gene39756:CDS | 40.0% |
| ACTGGATTCTGTGCTGGAAA+AGG | - | chr4.4:25056771-25056790 | MS.gene39756:CDS | 45.0% | |
| AGCCAAGGGCTCAGATAAAT+TGG | + | chr4.4:25054520-25054539 | None:intergenic | 45.0% | |
| AGGGCTCAGATAAATTGGGA+CGG | + | chr4.4:25054515-25054534 | None:intergenic | 45.0% | |
| ATGTGCTGTGGAGATGAGAA+AGG | - | chr4.4:25054477-25054496 | MS.gene39756:intron | 45.0% | |
| CAAGACCACGTAATGTTCCA+AGG | + | chr4.4:25054119-25054138 | None:intergenic | 45.0% | |
| CTCAGATAAATTGGGACGGA+GGG | + | chr4.4:25054511-25054530 | None:intergenic | 45.0% | |
| CTTCTTCTATGGTCCCAAAC+TGG | - | chr4.4:25055496-25055515 | MS.gene39756:intron | 45.0% | |
| GAATGAGAAGGAAAAGGTGG+TGG | - | chr4.4:25053978-25053997 | MS.gene39756:CDS | 45.0% | |
| GCCAAGGGCTCAGATAAATT+GGG | + | chr4.4:25054519-25054538 | None:intergenic | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+TGG | - | chr4.4:25053975-25053994 | MS.gene39756:CDS | 45.0% | |
| GGTCACATAGTATCTCAGGT+TGG | + | chr4.4:25056594-25056613 | None:intergenic | 45.0% | |
| GTCATCACCACCACATTCAT+TGG | - | chr4.4:25053948-25053967 | MS.gene39756:CDS | 45.0% | |
| TCCCAATTTATCTGAGCCCT+TGG | - | chr4.4:25054515-25054534 | MS.gene39756:intron | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | - | chr4.4:25054003-25054022 | MS.gene39756:CDS | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | - | chr4.4:25054478-25054497 | MS.gene39756:intron | 45.0% | |
| ! | TGGTGGTGATGACAATCCAT+TGG | + | chr4.4:25053941-25053960 | None:intergenic | 45.0% |
| !! | AGGTTGGTAATCACAGCAGA+TGG | + | chr4.4:25056578-25056597 | None:intergenic | 45.0% |
| !!! | AGTTTTGTTGTGGACATGCC+AGG | - | chr4.4:25055732-25055751 | MS.gene39756:intron | 45.0% |
| !!! | AAATTTAATCATTTTTTTTA+CGG | - | chr4.4:25056150-25056169 | MS.gene39756:intron | 5.0% |
| !!! | AAGTAATTATATATTTTTTT+TGG | + | chr4.4:25056323-25056342 | None:intergenic | 5.0% |
| !!! | TAAAAAAAATGATTAAATTT+TGG | + | chr4.4:25056150-25056169 | None:intergenic | 5.0% |
| AGAACCATAGGGAAGCAGAG+AGG | - | chr4.4:25054067-25054086 | MS.gene39756:CDS | 50.0% | |
| AGATGCATGGCTGCATGAAG+AGG | + | chr4.4:25056875-25056894 | None:intergenic | 50.0% | |
| ATCTATTACTCCCTCCGTCC+CGG | + | chr4.4:25054724-25054743 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr4.4:25054707-25054726 | MS.gene39756:intron | 50.0% | |
| CACACGGGTGTACATAGAGT+GGG | + | chr4.4:25056192-25056211 | None:intergenic | 50.0% | |
| GCTCAGATAAATTGGGACGG+AGG | + | chr4.4:25054512-25054531 | None:intergenic | 50.0% | |
| GGAAGCAGAGAGGAGAAGAA+GGG | - | chr4.4:25054077-25054096 | MS.gene39756:CDS | 50.0% | |
| GGTCACCTTGGAACATTACG+TGG | - | chr4.4:25054111-25054130 | MS.gene39756:CDS | 50.0% | |
| TCACACGGGTGTACATAGAG+TGG | + | chr4.4:25056193-25056212 | None:intergenic | 50.0% | |
| TTCTCCTCTCTGCTTCCCTA+TGG | + | chr4.4:25054074-25054093 | None:intergenic | 50.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | - | chr4.4:25053999-25054018 | MS.gene39756:CDS | 50.0% |
| GGACATGCCAGGTGTTCTTC+TGG | - | chr4.4:25055743-25055762 | MS.gene39756:intron | 55.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | - | chr4.4:25054076-25054095 | MS.gene39756:CDS | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr4.4:25054711-25054730 | MS.gene39756:intron | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | - | chr4.4:25056765-25056784 | MS.gene39756:CDS | 55.0% |
| GGTCAGATATTCCGGGACGG+AGG | - | chr4.4:25054710-25054729 | MS.gene39756:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 25053850 | 25056906 | 25053850 | ID=MS.gene39756 |
| chr4.4 | mRNA | 25053850 | 25056906 | 25053850 | ID=MS.gene39756.t1;Parent=MS.gene39756 |
| chr4.4 | exon | 25056598 | 25056906 | 25056598 | ID=MS.gene39756.t1.exon1;Parent=MS.gene39756.t1 |
| chr4.4 | CDS | 25056598 | 25056906 | 25056598 | ID=cds.MS.gene39756.t1;Parent=MS.gene39756.t1 |
| chr4.4 | exon | 25053850 | 25054347 | 25053850 | ID=MS.gene39756.t1.exon2;Parent=MS.gene39756.t1 |
| chr4.4 | CDS | 25053850 | 25054347 | 25053850 | ID=cds.MS.gene39756.t1;Parent=MS.gene39756.t1 |
| Gene Sequence |
| Protein sequence |
