AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39794

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39794.t1 MTR_5g088220 97.000 500 11 4 1 499 1 497 0.0 958
MS.gene39794.t1 MTR_7g088140 52.500 400 143 9 120 490 82 463 1.66e-109 334
MS.gene39794.t1 MTR_7g088140 54.324 370 129 6 120 461 82 439 4.36e-109 333
MS.gene39794.t1 MTR_8g463890 46.341 246 119 5 98 341 12 246 5.54e-60 204
MS.gene39794.t1 MTR_4g088010 43.049 223 118 1 119 341 30 243 1.30e-58 197
MS.gene39794.t1 MTR_3g116130 40.625 96 52 1 161 256 25 115 2.07e-18 85.9
MS.gene39794.t1 MTR_1g073690 24.265 272 184 5 160 414 1 267 2.73e-18 87.8
MS.gene39794.t1 MTR_3g116130 40.625 96 52 1 161 256 25 115 8.91e-18 85.5
MS.gene39794.t1 MTR_2g026180 25.000 192 120 4 160 337 1 182 1.28e-16 82.8
MS.gene39794.t1 MTR_5g097580 25.532 282 158 10 166 419 7 264 2.32e-16 82.0
MS.gene39794.t1 MTR_5g097580 25.532 282 158 10 166 419 7 264 2.84e-16 81.6
MS.gene39794.t1 MTR_6g004810 26.163 172 118 3 166 336 46 209 4.47e-16 80.5
MS.gene39794.t1 MTR_5g064120 40.741 81 48 0 161 241 12 92 1.02e-15 77.8
MS.gene39794.t1 MTR_8g024520 40.964 83 49 0 161 243 21 103 2.76e-15 76.6
MS.gene39794.t1 MTR_8g024520 40.964 83 49 0 161 243 21 103 2.83e-15 76.6
MS.gene39794.t1 MTR_3g055990 24.590 183 120 3 166 337 7 182 5.69e-15 77.4
MS.gene39794.t1 MTR_3g055990 24.590 183 120 3 166 337 7 182 6.06e-15 77.4
MS.gene39794.t1 MTR_7g117495 38.554 83 51 0 161 243 14 96 2.21e-14 73.6
MS.gene39794.t1 MTR_7g117495 38.554 83 51 0 161 243 14 96 2.43e-14 73.2
MS.gene39794.t1 MTR_3g092490 37.931 87 54 0 161 247 22 108 2.68e-14 73.2
MS.gene39794.t1 MTR_3g092490 37.931 87 54 0 161 247 22 108 2.70e-14 73.2
MS.gene39794.t1 MTR_3g092490 37.931 87 54 0 161 247 22 108 2.76e-14 71.6
MS.gene39794.t1 MTR_4g035310 38.554 83 51 0 161 243 12 94 2.90e-14 73.6
MS.gene39794.t1 MTR_4g035310 38.554 83 51 0 161 243 12 94 3.39e-14 73.2
MS.gene39794.t1 MTR_5g017280 24.224 161 114 3 165 325 4 156 6.88e-14 73.9
MS.gene39794.t1 MTR_5g017280 24.224 161 114 3 165 325 4 156 8.89e-14 73.2
MS.gene39794.t1 MTR_3g082650 24.375 160 113 2 166 325 19 170 2.72e-13 71.6
MS.gene39794.t1 MTR_8g092550 28.230 209 124 5 146 338 183 381 6.11e-13 71.6
MS.gene39794.t1 MTR_3g095230 27.619 210 125 5 146 338 196 395 1.26e-11 67.4
MS.gene39794.t1 MTR_3g095230 27.619 210 125 5 146 338 196 395 1.74e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39794.t1 AT2G41060 47.860 514 188 15 1 498 1 450 1.76e-130 386
MS.gene39794.t1 AT2G41060 47.860 514 188 15 1 498 1 450 1.76e-130 386
MS.gene39794.t1 AT2G41060 47.860 514 188 15 1 498 1 450 1.76e-130 386
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G56860 55.932 413 131 12 113 499 91 478 5.18e-129 384
MS.gene39794.t1 AT3G15010 44.889 225 120 1 118 342 28 248 6.65e-61 205
MS.gene39794.t1 AT3G15010 44.889 225 120 1 118 342 28 248 6.65e-61 205
MS.gene39794.t1 AT2G22090 49.606 127 64 0 118 244 57 183 3.13e-35 135
MS.gene39794.t1 AT2G22090 40.000 90 54 0 257 346 100 189 8.00e-13 70.1
MS.gene39794.t1 AT2G22090 49.606 127 64 0 118 244 57 183 4.73e-35 134
MS.gene39794.t1 AT2G22090 40.000 90 54 0 257 346 100 189 7.94e-13 70.1
MS.gene39794.t1 AT2G22100 44.681 141 71 1 112 252 110 243 2.14e-33 130
MS.gene39794.t1 AT2G19380 45.802 131 71 0 114 244 357 487 1.02e-31 129
MS.gene39794.t1 AT1G76460 42.424 99 50 2 161 253 20 117 1.03e-17 84.0
MS.gene39794.t1 AT1G20880 43.373 83 47 0 161 243 20 102 1.30e-17 83.6
MS.gene39794.t1 AT1G20880 43.373 83 47 0 161 243 20 102 1.30e-17 83.6
MS.gene39794.t1 AT1G20880 43.373 83 47 0 161 243 20 102 1.30e-17 83.6
MS.gene39794.t1 AT5G40490 26.163 172 118 2 166 336 43 206 4.63e-17 84.0
MS.gene39794.t1 AT1G22330 40.000 90 53 1 161 249 13 102 4.36e-16 79.3
MS.gene39794.t1 AT1G22330 32.075 106 66 1 254 353 10 115 2.29e-11 65.1
MS.gene39794.t1 AT3G07810 25.397 189 113 4 166 337 7 184 4.84e-16 80.9
MS.gene39794.t1 AT3G07810 25.397 189 113 4 166 337 7 184 6.08e-16 80.9
MS.gene39794.t1 AT1G17640 27.564 156 108 3 166 321 67 217 7.47e-16 79.7
MS.gene39794.t1 AT1G17640 27.564 156 108 3 166 321 67 217 7.47e-16 79.7
MS.gene39794.t1 AT1G17640 27.564 156 108 3 166 321 67 217 7.47e-16 79.7
MS.gene39794.t1 AT4G26650 25.543 184 124 3 166 337 16 198 1.57e-15 79.3
MS.gene39794.t1 AT2G46780 39.362 94 57 0 160 253 17 110 1.63e-15 78.2
MS.gene39794.t1 AT2G46780 39.362 94 57 0 160 253 17 110 1.63e-15 78.2
MS.gene39794.t1 AT4G26650 25.543 184 124 3 166 337 13 195 1.65e-15 79.3
MS.gene39794.t1 AT1G78260 39.506 81 49 0 161 241 13 93 2.08e-15 77.0
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 2.32e-15 78.6
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 2.32e-15 78.6
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 2.32e-15 78.6
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 2.32e-15 78.6
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 2.32e-15 78.6
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 3.71e-15 78.2
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 3.71e-15 78.2
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 3.71e-15 78.2
MS.gene39794.t1 AT5G55550 24.865 185 121 4 166 337 7 186 3.71e-15 78.2
MS.gene39794.t1 AT1G78260 39.506 81 49 0 161 241 13 93 7.64e-15 75.1
MS.gene39794.t1 AT5G47620 23.280 189 115 3 166 337 7 182 8.05e-15 77.0
MS.gene39794.t1 AT5G47620 23.280 189 115 3 166 337 7 182 8.05e-15 77.0
MS.gene39794.t1 AT5G47620 23.280 189 115 3 166 337 7 182 8.05e-15 77.0
MS.gene39794.t1 AT4G36960 24.157 178 116 4 165 337 3 166 8.63e-15 76.6
MS.gene39794.t1 AT4G36960 24.157 178 116 4 165 337 3 166 8.63e-15 76.6
MS.gene39794.t1 AT3G06970 43.590 78 44 0 166 243 13 90 1.04e-14 75.5
MS.gene39794.t1 AT1G22910 40.964 83 49 0 161 243 9 91 2.19e-14 73.6
MS.gene39794.t1 AT1G22910 40.964 83 49 0 161 243 9 91 2.65e-14 73.2
MS.gene39794.t1 AT5G53680 36.364 99 59 1 159 253 7 105 2.42e-13 68.6
MS.gene39794.t1 AT1G22910 40.964 83 49 0 161 243 9 91 2.53e-13 71.6
MS.gene39794.t1 AT4G14300 21.939 196 125 4 160 337 1 186 3.99e-13 71.6
MS.gene39794.t1 AT4G14300 21.939 196 125 4 160 337 1 186 3.99e-13 71.6
MS.gene39794.t1 AT2G33410 22.652 181 130 2 166 337 7 186 5.01e-13 71.2
MS.gene39794.t1 AT1G33470 37.349 83 52 0 161 243 3 85 5.06e-13 69.3
MS.gene39794.t1 AT1G33470 37.349 83 52 0 161 243 3 85 7.39e-13 68.9
MS.gene39794.t1 AT1G33470 37.349 83 52 0 161 243 3 85 7.49e-13 68.9
MS.gene39794.t1 AT3G13224 24.845 161 115 1 165 325 10 164 1.69e-12 69.3
MS.gene39794.t1 AT5G40490 24.823 141 98 1 185 325 45 177 1.88e-12 69.3
MS.gene39794.t1 AT3G54770 38.554 83 51 0 161 243 13 95 2.31e-12 67.8
MS.gene39794.t1 AT3G13224 24.375 160 115 1 166 325 20 173 2.70e-12 68.6
MS.gene39794.t1 AT3G54770 38.554 83 51 0 161 243 13 95 2.94e-12 67.4
MS.gene39794.t1 AT5G11412 36.471 85 54 0 159 243 46 130 1.53e-11 63.5
MS.gene39794.t1 AT1G60650 36.842 76 47 1 166 240 13 88 1.94e-11 65.5
MS.gene39794.t1 AT1G60650 36.842 76 47 1 166 240 13 88 1.94e-11 65.5
MS.gene39794.t1 AT5G53720 38.462 78 48 0 166 243 10 87 2.36e-11 60.8
MS.gene39794.t1 AT4G24770 23.626 182 132 5 166 343 151 329 3.27e-11 65.1
MS.gene39794.t1 AT4G24770 23.626 182 132 5 166 343 151 329 3.27e-11 65.1

Find 177 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCGAAGCTTTCGTTTCT+TGG 0.186412 5.4:+69312586 None:intergenic
TCGGCTTGTTTGGTGGGTTC+AGG 0.212017 5.4:+69312557 None:intergenic
GGCTACTTCTTGTTGGGGTT+CGG 0.231287 5.4:+69312532 None:intergenic
GGGAATTTGCTTGGAGGTCT+TGG 0.253466 5.4:-69311285 MS.gene39794:CDS
GCTGTGACTGATAAGAATTC+TGG 0.262013 5.4:-69312005 MS.gene39794:CDS
ATTTCTTCTTCTTGTGTTGT+TGG 0.272882 5.4:+69312500 None:intergenic
GCTACTTCTTGTTGGGGTTC+GGG 0.291185 5.4:+69312533 None:intergenic
TCCCGGTGGCGCTCCTTACA+TGG 0.295626 5.4:-69311121 MS.gene39794:CDS
TTCTTCGGCTACTTCTTGTT+GGG 0.310632 5.4:+69312526 None:intergenic
TTCGGGTTCGGCTTGTTTGG+TGG 0.320019 5.4:+69312550 None:intergenic
CTTGACCCAGCTGAGGATTC+TGG 0.326079 5.4:+69311169 None:intergenic
CTTCTTCGGCTACTTCTTGT+TGG 0.328969 5.4:+69312525 None:intergenic
TTCTTGTTGGGGTTCGGGTT+CGG 0.339395 5.4:+69312538 None:intergenic
AAAATCTTTGTTCATGGTCT+TGG 0.349785 5.4:-69312095 MS.gene39794:CDS
TGCCCCTCGAACACCTTATT+CGG 0.354163 5.4:+69311627 None:intergenic
TGCTGCTGCGTATGGTAATC+AGG 0.354467 5.4:-69311232 MS.gene39794:CDS
GAGGTGGATGATGGTCCATT+GGG 0.357481 5.4:-69311735 MS.gene39794:CDS
CAACGCCGGTGTGCCGGCTC+AGG 0.360674 5.4:-69311376 MS.gene39794:CDS
GCTATGGGATATGGCCAGCC+TGG 0.363089 5.4:-69311207 MS.gene39794:CDS
CACCGGAAAATCTTTGTTCA+TGG 0.376446 5.4:-69312101 MS.gene39794:CDS
GGCTTCGGCTGGACCTGTTC+CGG 0.376743 5.4:-69311874 MS.gene39794:CDS
CGGCTTGTTTGGTGGGTTCA+GGG 0.376961 5.4:+69312558 None:intergenic
AATCAGGCTGCTATGGGATA+TGG 0.385926 5.4:-69311216 MS.gene39794:CDS
CTTTGTTCATGGTCTTGGTT+GGG 0.386488 5.4:-69312090 MS.gene39794:CDS
CAAGGAGCTGGATTGGGACT+TGG 0.389500 5.4:-69311306 MS.gene39794:CDS
GGGTTCGGGTTCGGCTTGTT+TGG 0.394301 5.4:+69312547 None:intergenic
TTGGGACTTGGGAATTTGCT+TGG 0.397145 5.4:-69311294 MS.gene39794:CDS
TTGTGTTGTTGGTTCTTCTT+CGG 0.397521 5.4:+69312511 None:intergenic
AAGCAGCCGCAGAAAGTGAT+TGG 0.406418 5.4:-69311921 MS.gene39794:CDS
ACAAGAGGAAGATCTTGAAT+TGG 0.407627 5.4:-69312255 MS.gene39794:CDS
CAGGGATTGAATCCGGCTCT+TGG 0.407933 5.4:-69311357 MS.gene39794:CDS
TTCGGTGGAGGAGCCGGAAC+AGG 0.417847 5.4:+69311861 None:intergenic
TGAGGTTGATCTTCTTCAAT+CGG 0.424776 5.4:+69312473 None:intergenic
TGCTAATCAAGGAGCTGGAT+TGG 0.425869 5.4:-69311313 MS.gene39794:CDS
GGACTTGGGAATTTGCTTGG+AGG 0.433363 5.4:-69311291 MS.gene39794:CDS
TCTGCTTTGCTTGCTAATCA+AGG 0.433664 5.4:-69311324 MS.gene39794:CDS
CTGTGACTGATAAGAATTCT+GGG 0.435142 5.4:-69312004 MS.gene39794:CDS
TATTGTCAGAAGGCTGTTGA+TGG 0.441220 5.4:-69311597 MS.gene39794:CDS
TCAGACACCGGTGGCGCATT+CGG 0.442681 5.4:+69311843 None:intergenic
ATCACACGGTGGTCACTTGA+TGG 0.443713 5.4:-69311427 MS.gene39794:CDS
CGAACATTCTCAGACAGATC+TGG 0.446657 5.4:+69312149 None:intergenic
TGGTATTGTGGCTGCAACCC+AGG 0.451026 5.4:+69311189 None:intergenic
GGCGCATTCGGTGGAGGAGC+CGG 0.453295 5.4:+69311855 None:intergenic
TGGTTACAACGCCGGTGTGC+CGG 0.455193 5.4:-69311382 MS.gene39794:CDS
GCTAATCAAGGAGCTGGATT+GGG 0.456434 5.4:-69311312 MS.gene39794:CDS
CGGTGAAATTGAAGATTGTA+AGG 0.458299 5.4:-69312027 MS.gene39794:CDS
TCTTTGTTCATGGTCTTGGT+TGG 0.459374 5.4:-69312091 MS.gene39794:CDS
TGTAATTGCTCCTTCGTGAA+TGG 0.461004 5.4:+69312203 None:intergenic
TAGGACTACATCGTGTCAAT+TGG 0.462310 5.4:-69311895 MS.gene39794:CDS
CGCAGAAAGTGATTGGGAAT+AGG 0.466923 5.4:-69311914 MS.gene39794:CDS
TGGTCCATTGGGGTTGGATA+AGG 0.467413 5.4:-69311724 MS.gene39794:CDS
GTATGGTAATCAGGCTGCTA+TGG 0.467614 5.4:-69311223 MS.gene39794:CDS
GGCGTTGGAAGAGCCGAATA+AGG 0.467801 5.4:-69311640 MS.gene39794:CDS
ATTGAATCCGGCTCTTGGAC+AGG 0.468734 5.4:-69311352 MS.gene39794:CDS
CCTCAGCTGGGTCAAGGTGG+TGG 0.468825 5.4:-69311162 MS.gene39794:CDS
AGCATCGGACTGGGTGTCGT+CGG 0.471058 5.4:-69311950 MS.gene39794:CDS
TCGGGTTCGGCTTGTTTGGT+GGG 0.471504 5.4:+69312551 None:intergenic
ACCCATGTAAGGAGCGCCAC+CGG 0.472419 5.4:+69311119 None:intergenic
TTGCTTGCTAATCAAGGAGC+TGG 0.472566 5.4:-69311318 MS.gene39794:CDS
GGAGGTTGCAGAAGAAGAAG+AGG 0.474266 5.4:-69312417 MS.gene39794:CDS
GGTTCTAGAAGCTTCTCAAC+AGG 0.476416 5.4:+69312224 None:intergenic
GCATCGGACTGGGTGTCGTC+GGG 0.476975 5.4:-69311949 MS.gene39794:CDS
TACATCGTGTCAATTGGCTT+CGG 0.478390 5.4:-69311889 MS.gene39794:CDS
ACAAACAGCGCAAAACCCTT+TGG 0.479302 5.4:+69311690 None:intergenic
GTCTGAGAATGTTCGTCAGC+TGG 0.480431 5.4:-69312141 MS.gene39794:CDS
GCCGGCTCAGGGATTGAATC+CGG 0.480635 5.4:-69311364 MS.gene39794:CDS
GAAGGCTGTTGATGGTCCTA+AGG 0.480805 5.4:-69311589 MS.gene39794:CDS
AGAGGTGGATGATGGTCCAT+TGG 0.483246 5.4:-69311736 MS.gene39794:CDS
CACCATCACGGTGGTGGTGG+TGG 0.484347 5.4:-69311501 MS.gene39794:CDS
AATTTGCTTGGAGGTCTTGG+TGG 0.484936 5.4:-69311282 MS.gene39794:CDS
CTGATGTGGACCCCGCTCAC+CGG 0.485472 5.4:-69312118 MS.gene39794:CDS
TCCTCCACCGAATGCGCCAC+CGG 0.486406 5.4:-69311850 MS.gene39794:CDS
AAGGAGCTGGATTGGGACTT+GGG 0.487129 5.4:-69311305 MS.gene39794:CDS
ATTGTGGCTGCAACCCAGGC+TGG 0.487864 5.4:+69311193 None:intergenic
GGAGGACCAGCTTGATTCAC+CGG 0.487882 5.4:+69311255 None:intergenic
GGTCACTTGATGGCTCCTAC+TGG 0.489465 5.4:-69311417 MS.gene39794:CDS
CGCTCCTTACATGGGTCACT+AGG 0.492696 5.4:-69311112 None:intergenic
TCAAGTGACCACCGTGTGAT+GGG 0.493869 5.4:+69311430 None:intergenic
ATGGCTCCTACTGGTCCTGC+TGG 0.494184 5.4:-69311408 MS.gene39794:CDS
TCGTGTCAATTGGCTTCGGC+TGG 0.495359 5.4:-69311885 MS.gene39794:CDS
GCGCCACCGGGACCAGGATG+AGG 0.495486 5.4:+69311132 None:intergenic
ACCGGTGGCGCATTCGGTGG+AGG 0.495710 5.4:+69311849 None:intergenic
AAGCTTTCGTTTCTTGGCCA+TGG 0.498024 5.4:+69312592 None:intergenic
CTCACCTAGTGACCCATGTA+AGG 0.500179 5.4:+69311108 None:intergenic
AAGTATTCACATGGTGGTGG+TGG 0.503763 5.4:-69311453 MS.gene39794:CDS
ACAATACCAGAATCCTCAGC+TGG 0.504026 5.4:-69311175 MS.gene39794:CDS
CTATGGGATATGGCCAGCCT+GGG 0.505656 5.4:-69311206 MS.gene39794:CDS
CCTACTGGTCCTGCTGGTGG+TGG 0.506260 5.4:-69311402 MS.gene39794:CDS
TGCGCTGTTTGTTTATAAGA+CGG 0.506286 5.4:-69311679 MS.gene39794:CDS
ATCAAGTGACCACCGTGTGA+TGG 0.507458 5.4:+69311429 None:intergenic
GACGGTTGAGAGTGCTAAGA+AGG 0.508593 5.4:-69311661 MS.gene39794:CDS
GCCGGATTCAATCCCTGAGC+CGG 0.510375 5.4:+69311363 None:intergenic
GACAAAGCCTGTCCAAGAGC+CGG 0.512535 5.4:+69311345 None:intergenic
TAAGGAGCGCCACCGGGACC+AGG 0.518273 5.4:+69311126 None:intergenic
GGATGATGGTCCATTGGGGT+TGG 0.519268 5.4:-69311730 MS.gene39794:CDS
TTGGGGTTGGATAAGGCGAC+TGG 0.520918 5.4:-69311717 MS.gene39794:CDS
AGCAGCCGCAGAAAGTGATT+GGG 0.521007 5.4:-69311920 MS.gene39794:CDS
TTCAAACAACGCTGCCGTGT+CGG 0.523374 5.4:-69312333 MS.gene39794:CDS
TGATTACCATACGCAGCAGC+AGG 0.524463 5.4:+69311234 None:intergenic
CCCGGTGGCGCTCCTTACAT+GGG 0.525317 5.4:-69311120 MS.gene39794:CDS
GTTAGACCTCATCCTGGTCC+CGG 0.526551 5.4:-69311138 MS.gene39794:CDS
AACGCCGGTGTGCCGGCTCA+GGG 0.526695 5.4:-69311375 MS.gene39794:CDS
CATCACCATCACGGTGGTGG+TGG 0.527530 5.4:-69311504 MS.gene39794:CDS
TATGGTAATCAGGCTGCTAT+GGG 0.529499 5.4:-69311222 MS.gene39794:CDS
AGCTGAGGATTCTGGTATTG+TGG 0.529596 5.4:+69311177 None:intergenic
GGTCCTCCTGCTGCTGCGTA+TGG 0.531826 5.4:-69311240 MS.gene39794:CDS
AGGTGAAGAAGAGCAAGAAG+AGG 0.532986 5.4:-69312438 MS.gene39794:CDS
TGGAGGTCTTGGTGGTGCGC+CGG 0.533288 5.4:-69311274 MS.gene39794:CDS
CTTTGAGTATACTCAGACAC+CGG 0.535878 5.4:+69311831 None:intergenic
CAATAACAACGAAGAACAAG+AGG 0.537174 5.4:-69312270 MS.gene39794:CDS
TTTCAAGCAGTTTGGAGAGG+TGG 0.539323 5.4:-69311751 MS.gene39794:CDS
CCCATGTAAGGAGCGCCACC+GGG 0.540286 5.4:+69311120 None:intergenic
CAGTTTGGAGAGGTGGATGA+TGG 0.542414 5.4:-69311744 MS.gene39794:CDS
TGTTCGTCAGCTGGCTGATG+TGG 0.543983 5.4:-69312132 MS.gene39794:CDS
TGAAGAAGAGCAAGAAGAGG+AGG 0.546641 5.4:-69312435 MS.gene39794:CDS
GACACCGGTGGCGCATTCGG+TGG 0.554738 5.4:+69311846 None:intergenic
TCTTCGGCTACTTCTTGTTG+GGG 0.555994 5.4:+69312527 None:intergenic
GAGCCGAATAAGGTGTTCGA+GGG 0.557980 5.4:-69311630 MS.gene39794:CDS
CTATTCCCAATCACTTTCTG+CGG 0.566327 5.4:+69311915 None:intergenic
TGAGAGTGCTAAGAAGGCGT+TGG 0.568548 5.4:-69311655 MS.gene39794:CDS
GCTCCTACTGGTCCTGCTGG+TGG 0.571468 5.4:-69311405 MS.gene39794:CDS
GCATACTTTGTATTGTCAGA+AGG 0.572781 5.4:-69311607 MS.gene39794:CDS
TGGTCCTAAGGGTTACAACA+AGG 0.573830 5.4:-69311577 MS.gene39794:CDS
CAGAATCCTCAGCTGGGTCA+AGG 0.575625 5.4:-69311168 MS.gene39794:CDS
CCTAGAAAATCAACAACAAG+AGG 0.576213 5.4:-69312369 MS.gene39794:CDS
GGTGGTGTTAGACCTCATCC+TGG 0.576645 5.4:-69311144 MS.gene39794:CDS
AAGGCGACTGGGAAGCCAAA+GGG 0.581826 5.4:-69311705 MS.gene39794:CDS
GGTGGTGGTGGCCCATCACA+CGG 0.582405 5.4:-69311441 MS.gene39794:CDS
GCGTTGTAACCACCACCAGC+AGG 0.582900 5.4:+69311393 None:intergenic
CATCATCACCATCACGGTGG+TGG 0.584236 5.4:-69311507 MS.gene39794:CDS
AGAGCCGAATAAGGTGTTCG+AGG 0.585996 5.4:-69311631 MS.gene39794:CDS
AAGAATTCTGGGAAATCGAA+AGG 0.586836 5.4:-69311993 MS.gene39794:CDS
AAGGCTGTTGATGGTCCTAA+GGG 0.587938 5.4:-69311588 MS.gene39794:CDS
GGTGCGCCGGTGAATCAAGC+TGG 0.587980 5.4:-69311261 MS.gene39794:CDS
GTCGGAGCAGACTGTGAAGG+TGG 0.597030 5.4:-69312315 MS.gene39794:CDS
GTCCTAAGGGTTACAACAAG+GGG 0.599613 5.4:-69311575 MS.gene39794:CDS
AGGTGGATGATGGTCCATTG+GGG 0.599675 5.4:-69311734 MS.gene39794:CDS
GGTCCTAAGGGTTACAACAA+GGG 0.601882 5.4:-69311576 MS.gene39794:CDS
AAGAAGTATTCACATGGTGG+TGG 0.603956 5.4:-69311456 MS.gene39794:CDS
CAATCCCTGAGCCGGCACAC+CGG 0.607582 5.4:+69311371 None:intergenic
TGGGGTTGGATAAGGCGACT+GGG 0.613826 5.4:-69311716 MS.gene39794:CDS
GTCGCCTTATCCAACCCCAA+TGG 0.615111 5.4:+69311720 None:intergenic
CGTGTCGGAGCAGACTGTGA+AGG 0.617761 5.4:-69312318 MS.gene39794:CDS
ACACGTGCTTGTGAAGCAAG+CGG 0.622021 5.4:-69312183 MS.gene39794:CDS
CAACCTCAAAACGAAGGAGA+AGG 0.623160 5.4:-69312458 MS.gene39794:CDS
AAGGTGGAAGCTAACGGTGG+TGG 0.624235 5.4:-69312299 MS.gene39794:CDS
TAAGGCGACTGGGAAGCCAA+AGG 0.624508 5.4:-69311706 MS.gene39794:CDS
CCACCACCAGCAGGACCAGT+AGG 0.625255 5.4:+69311402 None:intergenic
GTGGTGGTCACTACAATCCA+AGG 0.627985 5.4:-69311485 MS.gene39794:CDS
GCTGGTGGTGGTTACAACGC+CGG 0.630397 5.4:-69311390 MS.gene39794:CDS
AATCAACAACAAGAGGGTGG+CGG 0.641401 5.4:-69312362 MS.gene39794:CDS
GAAGATCAACCTCAAAACGA+AGG 0.642987 5.4:-69312464 MS.gene39794:CDS
TTCACCGTACTTCGAAAACG+TGG 0.643668 5.4:+69312043 None:intergenic
CAATACCAGAATCCTCAGCT+GGG 0.650944 5.4:-69311174 MS.gene39794:CDS
CGGTGTCTGAGTATACTCAA+AGG 0.652912 5.4:-69311830 MS.gene39794:CDS
AGACCTCATCCTGGTCCCGG+TGG 0.660243 5.4:-69311135 MS.gene39794:CDS
CCACCACCTTGACCCAGCTG+AGG 0.661990 5.4:+69311162 None:intergenic
CATTCGCATCATCACCATCA+CGG 0.665008 5.4:-69311513 MS.gene39794:CDS
GAAAAGAAGTATTCACATGG+TGG 0.667361 5.4:-69311459 MS.gene39794:CDS
ACCGTACTTCGAAAACGTGG+TGG 0.667699 5.4:+69312046 None:intergenic
AATCCTCAGCTGGGTCAAGG+TGG 0.672405 5.4:-69311165 MS.gene39794:CDS
GAAAATCAACAACAAGAGGG+TGG 0.674797 5.4:-69312365 MS.gene39794:CDS
TTACCATACGCAGCAGCAGG+AGG 0.677100 5.4:+69311237 None:intergenic
ACTGTGAAGGTGGAAGCTAA+CGG 0.678694 5.4:-69312305 MS.gene39794:CDS
CTTCACAGTCTGCTCCGACA+CGG 0.679380 5.4:+69312319 None:intergenic
AGCCGAATAAGGTGTTCGAG+GGG 0.683238 5.4:-69311629 MS.gene39794:CDS
GAAGAAGAGGATGATCAACA+AGG 0.685106 5.4:-69312404 MS.gene39794:CDS
CTAGAAAATCAACAACAAGA+GGG 0.690323 5.4:-69312368 MS.gene39794:CDS
TGGTGATGATGCGAATGATG+CGG 0.691685 5.4:+69311519 None:intergenic
TGAGTATACTCAGACACCGG+TGG 0.708396 5.4:+69311834 None:intergenic
AAAGAAAAGAAGTATTCACA+TGG 0.713599 5.4:-69311462 MS.gene39794:CDS
GCTTCTAGAACCATTCACGA+AGG 0.714086 5.4:-69312213 MS.gene39794:CDS
TCCTAAGGGTTACAACAAGG+GGG 0.727464 5.4:-69311574 MS.gene39794:CDS
CCTAAGGGTTACAACAAGGG+GGG 0.736362 5.4:-69311573 MS.gene39794:CDS
GGTGGTGGCCCATCACACGG+TGG 0.744986 5.4:-69311438 MS.gene39794:CDS
TCGCATCATCACCATCACGG+TGG 0.781979 5.4:-69311510 MS.gene39794:CDS
GTGAAGGTGGAAGCTAACGG+TGG 0.792915 5.4:-69312302 MS.gene39794:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTATTTTGTTTAAGCAT+CGG - chr5.4:69311738-69311757 MS.gene39794:CDS 20.0%
!!! AAAGAAAAGAAGTATTCACA+TGG - chr5.4:69312241-69312260 MS.gene39794:CDS 25.0%
AAAATCTTTGTTCATGGTCT+TGG - chr5.4:69311608-69311627 MS.gene39794:CDS 30.0%
ATTTCTTCTTCTTGTGTTGT+TGG + chr5.4:69311206-69311225 None:intergenic 30.0%
CTAGAAAATCAACAACAAGA+GGG - chr5.4:69311335-69311354 MS.gene39794:CDS 30.0%
! GAATACTTCTTTTCTTTCCT+TGG + chr5.4:69312238-69312257 None:intergenic 30.0%
!!! CTCTTGTTGTTGATTTTCTA+GGG + chr5.4:69311336-69311355 None:intergenic 30.0%
ACAAGAGGAAGATCTTGAAT+TGG - chr5.4:69311448-69311467 MS.gene39794:CDS 35.0%
CAATAACAACGAAGAACAAG+AGG - chr5.4:69311433-69311452 MS.gene39794:CDS 35.0%
CCTAGAAAATCAACAACAAG+AGG - chr5.4:69311334-69311353 MS.gene39794:CDS 35.0%
CGGTGAAATTGAAGATTGTA+AGG - chr5.4:69311676-69311695 MS.gene39794:CDS 35.0%
CTGTGACTGATAAGAATTCT+GGG - chr5.4:69311699-69311718 MS.gene39794:CDS 35.0%
GCATACTTTGTATTGTCAGA+AGG - chr5.4:69312096-69312115 MS.gene39794:CDS 35.0%
TGCGCTGTTTGTTTATAAGA+CGG - chr5.4:69312024-69312043 MS.gene39794:CDS 35.0%
! AAGAATTCTGGGAAATCGAA+AGG - chr5.4:69311710-69311729 MS.gene39794:CDS 35.0%
! GACCATGAACAAAGATTTTC+CGG + chr5.4:69311607-69311626 None:intergenic 35.0%
! TGAGGTTGATCTTCTTCAAT+CGG + chr5.4:69311233-69311252 None:intergenic 35.0%
!! GAAAAGAAGTATTCACATGG+TGG - chr5.4:69312244-69312263 MS.gene39794:CDS 35.0%
!! TTGTGTTGTTGGTTCTTCTT+CGG + chr5.4:69311195-69311214 None:intergenic 35.0%
!!! ATTTTGTTTAAGCATCGGAC+TGG - chr5.4:69311743-69311762 MS.gene39794:CDS 35.0%
!!! CCTCTTGTTGTTGATTTTCT+AGG + chr5.4:69311337-69311356 None:intergenic 35.0%
!!! CTTGAGTTTTTCAAGCAGTT+TGG - chr5.4:69311944-69311963 MS.gene39794:CDS 35.0%
!!! TTTTGTTTAAGCATCGGACT+GGG - chr5.4:69311744-69311763 MS.gene39794:CDS 35.0%
AAAAACTCAAGCAGCTTCTG+AGG + chr5.4:69311935-69311954 None:intergenic 40.0%
AGATCGAAGCTTTCGTTTCT+TGG + chr5.4:69311120-69311139 None:intergenic 40.0%
CACCGGAAAATCTTTGTTCA+TGG - chr5.4:69311602-69311621 MS.gene39794:CDS 40.0%
CTATTCCCAATCACTTTCTG+CGG + chr5.4:69311791-69311810 None:intergenic 40.0%
CTTTGAGTATACTCAGACAC+CGG + chr5.4:69311875-69311894 None:intergenic 40.0%
GAAAATCAACAACAAGAGGG+TGG - chr5.4:69311338-69311357 MS.gene39794:CDS 40.0%
GAAGAAGAGGATGATCAACA+AGG - chr5.4:69311299-69311318 MS.gene39794:CDS 40.0%
GAAGATCAACCTCAAAACGA+AGG - chr5.4:69311239-69311258 MS.gene39794:CDS 40.0%
GCTGTGACTGATAAGAATTC+TGG - chr5.4:69311698-69311717 MS.gene39794:CDS 40.0%
TAGGACTACATCGTGTCAAT+TGG - chr5.4:69311808-69311827 MS.gene39794:CDS 40.0%
TATGGTAATCAGGCTGCTAT+GGG - chr5.4:69312481-69312500 MS.gene39794:CDS 40.0%
TATTGTCAGAAGGCTGTTGA+TGG - chr5.4:69312106-69312125 MS.gene39794:CDS 40.0%
TGTAATTGCTCCTTCGTGAA+TGG + chr5.4:69311503-69311522 None:intergenic 40.0%
TTCTTCGGCTACTTCTTGTT+GGG + chr5.4:69311180-69311199 None:intergenic 40.0%
! AACAAAGATTTTCCGGTGAG+CGG + chr5.4:69311600-69311619 None:intergenic 40.0%
! CTTTGTTCATGGTCTTGGTT+GGG - chr5.4:69311613-69311632 MS.gene39794:CDS 40.0%
! TACATCGTGTCAATTGGCTT+CGG - chr5.4:69311814-69311833 MS.gene39794:CDS 40.0%
! TCTGCTTTGCTTGCTAATCA+AGG - chr5.4:69312379-69312398 MS.gene39794:CDS 40.0%
! TCTTTGTTCATGGTCTTGGT+TGG - chr5.4:69311612-69311631 MS.gene39794:CDS 40.0%
!! AAGAAGTATTCACATGGTGG+TGG - chr5.4:69312247-69312266 MS.gene39794:CDS 40.0%
!!! GTTTTTCAAGCAGTTTGGAG+AGG - chr5.4:69311949-69311968 MS.gene39794:CDS 40.0%
AATCAACAACAAGAGGGTGG+CGG - chr5.4:69311341-69311360 MS.gene39794:CDS 45.0%
AATCAGGCTGCTATGGGATA+TGG - chr5.4:69312487-69312506 MS.gene39794:CDS 45.0%
ACAAACAGCGCAAAACCCTT+TGG + chr5.4:69312016-69312035 None:intergenic 45.0%
ACAATACCAGAATCCTCAGC+TGG - chr5.4:69312528-69312547 MS.gene39794:CDS 45.0%
ACTGTGAAGGTGGAAGCTAA+CGG - chr5.4:69311398-69311417 MS.gene39794:CDS 45.0%
AGCTGAGGATTCTGGTATTG+TGG + chr5.4:69312529-69312548 None:intergenic 45.0%
AGGTGAAGAAGAGCAAGAAG+AGG - chr5.4:69311265-69311284 MS.gene39794:CDS 45.0%
CAACCTCAAAACGAAGGAGA+AGG - chr5.4:69311245-69311264 MS.gene39794:CDS 45.0%
CAATACCAGAATCCTCAGCT+GGG - chr5.4:69312529-69312548 MS.gene39794:CDS 45.0%
CATTCGCATCATCACCATCA+CGG - chr5.4:69312190-69312209 MS.gene39794:CDS 45.0%
CGAACATTCTCAGACAGATC+TGG + chr5.4:69311557-69311576 None:intergenic 45.0%
CGCAGAAAGTGATTGGGAAT+AGG - chr5.4:69311789-69311808 MS.gene39794:CDS 45.0%
CGGTGTCTGAGTATACTCAA+AGG - chr5.4:69311873-69311892 MS.gene39794:CDS 45.0%
CTTCTTCGGCTACTTCTTGT+TGG + chr5.4:69311181-69311200 None:intergenic 45.0%
GCTAATCAAGGAGCTGGATT+GGG - chr5.4:69312391-69312410 MS.gene39794:CDS 45.0%
GGTCCTAAGGGTTACAACAA+GGG - chr5.4:69312127-69312146 MS.gene39794:CDS 45.0%
GTATGGTAATCAGGCTGCTA+TGG - chr5.4:69312480-69312499 MS.gene39794:CDS 45.0%
GTCCTAAGGGTTACAACAAG+GGG - chr5.4:69312128-69312147 MS.gene39794:CDS 45.0%
TCCTAAGGGTTACAACAAGG+GGG - chr5.4:69312129-69312148 MS.gene39794:CDS 45.0%
TCTTCGGCTACTTCTTGTTG+GGG + chr5.4:69311179-69311198 None:intergenic 45.0%
TGAAGAAGAGCAAGAAGAGG+AGG - chr5.4:69311268-69311287 MS.gene39794:CDS 45.0%
TGCTAATCAAGGAGCTGGAT+TGG - chr5.4:69312390-69312409 MS.gene39794:CDS 45.0%
TGGTCCTAAGGGTTACAACA+AGG - chr5.4:69312126-69312145 MS.gene39794:CDS 45.0%
TTCACCGTACTTCGAAAACG+TGG + chr5.4:69311663-69311682 None:intergenic 45.0%
TTTCAAGCAGTTTGGAGAGG+TGG - chr5.4:69311952-69311971 MS.gene39794:CDS 45.0%
! AATTTGCTTGGAGGTCTTGG+TGG - chr5.4:69312421-69312440 MS.gene39794:CDS 45.0%
! ACAAAGATTTTCCGGTGAGC+GGG + chr5.4:69311599-69311618 None:intergenic 45.0%
! ACCACCACGTTTTCGAAGTA+CGG - chr5.4:69311656-69311675 MS.gene39794:CDS 45.0%
! TCACCTTCTCCTTCGTTTTG+AGG + chr5.4:69311251-69311270 None:intergenic 45.0%
! TGGTGATGATGCGAATGATG+CGG + chr5.4:69312187-69312206 None:intergenic 45.0%
! TTGCTTGCTAATCAAGGAGC+TGG - chr5.4:69312385-69312404 MS.gene39794:CDS 45.0%
! TTGGGACTTGGGAATTTGCT+TGG - chr5.4:69312409-69312428 MS.gene39794:CDS 45.0%
!! AAGGCTGTTGATGGTCCTAA+GGG - chr5.4:69312115-69312134 MS.gene39794:CDS 45.0%
!! AAGTATTCACATGGTGGTGG+TGG - chr5.4:69312250-69312269 MS.gene39794:CDS 45.0%
!! GCTTCTAGAACCATTCACGA+AGG - chr5.4:69311490-69311509 MS.gene39794:CDS 45.0%
!! GGTTCTAGAAGCTTCTCAAC+AGG + chr5.4:69311482-69311501 None:intergenic 45.0%
AAGCAGCCGCAGAAAGTGAT+TGG - chr5.4:69311782-69311801 MS.gene39794:CDS 50.0%
ACACGTGCTTGTGAAGCAAG+CGG - chr5.4:69311520-69311539 MS.gene39794:CDS 50.0%
ACCGTACTTCGAAAACGTGG+TGG + chr5.4:69311660-69311679 None:intergenic 50.0%
AGCAGCCGCAGAAAGTGATT+GGG - chr5.4:69311783-69311802 MS.gene39794:CDS 50.0%
ATCAAGTGACCACCGTGTGA+TGG + chr5.4:69312277-69312296 None:intergenic 50.0%
ATCACACGGTGGTCACTTGA+TGG - chr5.4:69312276-69312295 MS.gene39794:CDS 50.0%
ATTGAATCCGGCTCTTGGAC+AGG - chr5.4:69312351-69312370 MS.gene39794:CDS 50.0%
CAGTTTGGAGAGGTGGATGA+TGG - chr5.4:69311959-69311978 MS.gene39794:CDS 50.0%
CCTAAGGGTTACAACAAGGG+GGG - chr5.4:69312130-69312149 MS.gene39794:CDS 50.0%
GCTACTTCTTGTTGGGGTTC+GGG + chr5.4:69311173-69311192 None:intergenic 50.0%
GGAGGTTGCAGAAGAAGAAG+AGG - chr5.4:69311286-69311305 MS.gene39794:CDS 50.0%
GGCTACTTCTTGTTGGGGTT+CGG + chr5.4:69311174-69311193 None:intergenic 50.0%
GTCTGAGAATGTTCGTCAGC+TGG - chr5.4:69311562-69311581 MS.gene39794:CDS 50.0%
GTGGTGGTCACTACAATCCA+AGG - chr5.4:69312218-69312237 MS.gene39794:CDS 50.0%
TCAAGTGACCACCGTGTGAT+GGG + chr5.4:69312276-69312295 None:intergenic 50.0%
TGAGTATACTCAGACACCGG+TGG + chr5.4:69311872-69311891 None:intergenic 50.0%
TGATTACCATACGCAGCAGC+AGG + chr5.4:69312472-69312491 None:intergenic 50.0%
TGCCCCTCGAACACCTTATT+CGG + chr5.4:69312079-69312098 None:intergenic 50.0%
TGCTGCTGCGTATGGTAATC+AGG - chr5.4:69312471-69312490 MS.gene39794:CDS 50.0%
TGGTCCATTGGGGTTGGATA+AGG - chr5.4:69311979-69311998 MS.gene39794:CDS 50.0%
TTCAAACAACGCTGCCGTGT+CGG - chr5.4:69311370-69311389 MS.gene39794:CDS 50.0%
! AAGGAGCTGGATTGGGACTT+GGG - chr5.4:69312398-69312417 MS.gene39794:CDS 50.0%
! AGAGCCGAATAAGGTGTTCG+AGG - chr5.4:69312072-69312091 MS.gene39794:CDS 50.0%
! AGAGGTGGATGATGGTCCAT+TGG - chr5.4:69311967-69311986 MS.gene39794:CDS 50.0%
! AGCCGAATAAGGTGTTCGAG+GGG - chr5.4:69312074-69312093 MS.gene39794:CDS 50.0%
! AGGTGGATGATGGTCCATTG+GGG - chr5.4:69311969-69311988 MS.gene39794:CDS 50.0%
! CAAAGATTTTCCGGTGAGCG+GGG + chr5.4:69311598-69311617 None:intergenic 50.0%
! GAGCCGAATAAGGTGTTCGA+GGG - chr5.4:69312073-69312092 MS.gene39794:CDS 50.0%
! GAGGTGGATGATGGTCCATT+GGG - chr5.4:69311968-69311987 MS.gene39794:CDS 50.0%
! GGACTTGGGAATTTGCTTGG+AGG - chr5.4:69312412-69312431 MS.gene39794:CDS 50.0%
! GGGAATTTGCTTGGAGGTCT+TGG - chr5.4:69312418-69312437 MS.gene39794:CDS 50.0%
! TTCTTGTTGGGGTTCGGGTT+CGG + chr5.4:69311168-69311187 None:intergenic 50.0%
!! GAAGGCTGTTGATGGTCCTA+AGG - chr5.4:69312114-69312133 MS.gene39794:CDS 50.0%
!! GACGGTTGAGAGTGCTAAGA+AGG - chr5.4:69312042-69312061 MS.gene39794:CDS 50.0%
!! TGAGAGTGCTAAGAAGGCGT+TGG - chr5.4:69312048-69312067 MS.gene39794:CDS 50.0%
AAGGCGACTGGGAAGCCAAA+GGG - chr5.4:69311998-69312017 MS.gene39794:CDS 55.0%
AAGGTGGAAGCTAACGGTGG+TGG - chr5.4:69311404-69311423 MS.gene39794:CDS 55.0%
AATCCTCAGCTGGGTCAAGG+TGG - chr5.4:69312538-69312557 MS.gene39794:CDS 55.0%
CAGAATCCTCAGCTGGGTCA+AGG - chr5.4:69312535-69312554 MS.gene39794:CDS 55.0%
CAGGGATTGAATCCGGCTCT+TGG - chr5.4:69312346-69312365 MS.gene39794:CDS 55.0%
CATCATCACCATCACGGTGG+TGG - chr5.4:69312196-69312215 MS.gene39794:CDS 55.0%
CTATGGGATATGGCCAGCCT+GGG - chr5.4:69312497-69312516 MS.gene39794:CDS 55.0%
CTTCACAGTCTGCTCCGACA+CGG + chr5.4:69311387-69311406 None:intergenic 55.0%
CTTGACCCAGCTGAGGATTC+TGG + chr5.4:69312537-69312556 None:intergenic 55.0%
GACAAAGCCTGTCCAAGAGC+CGG + chr5.4:69312361-69312380 None:intergenic 55.0%
GGAGGACCAGCTTGATTCAC+CGG + chr5.4:69312451-69312470 None:intergenic 55.0%
GTCGCCTTATCCAACCCCAA+TGG + chr5.4:69311986-69312005 None:intergenic 55.0%
GTGAAGGTGGAAGCTAACGG+TGG - chr5.4:69311401-69311420 MS.gene39794:CDS 55.0%
GTTAGACCTCATCCTGGTCC+CGG - chr5.4:69312565-69312584 MS.gene39794:CDS 55.0%
TAAGGCGACTGGGAAGCCAA+AGG - chr5.4:69311997-69312016 MS.gene39794:CDS 55.0%
TCGCATCATCACCATCACGG+TGG - chr5.4:69312193-69312212 MS.gene39794:CDS 55.0%
TGGGGTTGGATAAGGCGACT+GGG - chr5.4:69311987-69312006 MS.gene39794:CDS 55.0%
TGGTATTGTGGCTGCAACCC+AGG + chr5.4:69312517-69312536 None:intergenic 55.0%
TGTTCGTCAGCTGGCTGATG+TGG - chr5.4:69311571-69311590 MS.gene39794:CDS 55.0%
TTACCATACGCAGCAGCAGG+AGG + chr5.4:69312469-69312488 None:intergenic 55.0%
TTGGGGTTGGATAAGGCGAC+TGG - chr5.4:69311986-69312005 MS.gene39794:CDS 55.0%
! CAAGGAGCTGGATTGGGACT+TGG - chr5.4:69312397-69312416 MS.gene39794:CDS 55.0%
! CCCCCCTTGTTGTAACCCTT+AGG + chr5.4:69312133-69312152 None:intergenic 55.0%
! GGATGATGGTCCATTGGGGT+TGG - chr5.4:69311973-69311992 MS.gene39794:CDS 55.0%
! GGCGTTGGAAGAGCCGAATA+AGG - chr5.4:69312063-69312082 MS.gene39794:CDS 55.0%
! GGTCACTTGATGGCTCCTAC+TGG - chr5.4:69312286-69312305 MS.gene39794:CDS 55.0%
! GGTGGTGTTAGACCTCATCC+TGG - chr5.4:69312559-69312578 MS.gene39794:CDS 55.0%
! TCGGGTTCGGCTTGTTTGGT+GGG + chr5.4:69311155-69311174 None:intergenic 55.0%
! TCGTGTCAATTGGCTTCGGC+TGG - chr5.4:69311818-69311837 MS.gene39794:CDS 55.0%
! TTCGGGTTCGGCTTGTTTGG+TGG + chr5.4:69311156-69311175 None:intergenic 55.0%
!! CGGCTTGTTTGGTGGGTTCA+GGG + chr5.4:69311148-69311167 None:intergenic 55.0%
!! TCGGCTTGTTTGGTGGGTTC+AGG + chr5.4:69311149-69311168 None:intergenic 55.0%
ATGGCTCCTACTGGTCCTGC+TGG - chr5.4:69312295-69312314 MS.gene39794:CDS 60.0%
ATTGTGGCTGCAACCCAGGC+TGG + chr5.4:69312513-69312532 None:intergenic 60.0%
CGTGTCGGAGCAGACTGTGA+AGG - chr5.4:69311385-69311404 MS.gene39794:CDS 60.0%
GCCGGATTCAATCCCTGAGC+CGG + chr5.4:69312343-69312362 None:intergenic 60.0%
GCGTTGTAACCACCACCAGC+AGG + chr5.4:69312313-69312332 None:intergenic 60.0%
GCTATGGGATATGGCCAGCC+TGG - chr5.4:69312496-69312515 MS.gene39794:CDS 60.0%
GTCGGAGCAGACTGTGAAGG+TGG - chr5.4:69311388-69311407 MS.gene39794:CDS 60.0%
TCAGACACCGGTGGCGCATT+CGG + chr5.4:69311863-69311882 None:intergenic 60.0%
TGGTTACAACGCCGGTGTGC+CGG - chr5.4:69312321-69312340 MS.gene39794:CDS 60.0%
! AGCATCGGACTGGGTGTCGT+CGG - chr5.4:69311753-69311772 MS.gene39794:CDS 60.0%
! CATCACCATCACGGTGGTGG+TGG - chr5.4:69312199-69312218 MS.gene39794:CDS 60.0%
! GCCGGCTCAGGGATTGAATC+CGG - chr5.4:69312339-69312358 MS.gene39794:CDS 60.0%
! GGGTTCGGGTTCGGCTTGTT+TGG + chr5.4:69311159-69311178 None:intergenic 60.0%
!! ACCCATGTAAGGAGCGCCAC+CGG + chr5.4:69312587-69312606 None:intergenic 60.0%
!! GCTGGTGGTGGTTACAACGC+CGG - chr5.4:69312313-69312332 MS.gene39794:CDS 60.0%
AGACCTCATCCTGGTCCCGG+TGG - chr5.4:69312568-69312587 MS.gene39794:CDS 65.0%
CAATCCCTGAGCCGGCACAC+CGG + chr5.4:69312335-69312354 None:intergenic 65.0%
CCACCACCAGCAGGACCAGT+AGG + chr5.4:69312304-69312323 None:intergenic 65.0%
CCACCACCTTGACCCAGCTG+AGG + chr5.4:69312544-69312563 None:intergenic 65.0%
CCCGGTGGCGCTCCTTACAT+GGG - chr5.4:69312583-69312602 MS.gene39794:CDS 65.0%
CCTACTGGTCCTGCTGGTGG+TGG - chr5.4:69312301-69312320 MS.gene39794:CDS 65.0%
CCTCAGCTGGGTCAAGGTGG+TGG - chr5.4:69312541-69312560 MS.gene39794:CDS 65.0%
CTGATGTGGACCCCGCTCAC+CGG - chr5.4:69311585-69311604 MS.gene39794:CDS 65.0%
GACCACCACCACCACCGTGA+TGG + chr5.4:69312207-69312226 None:intergenic 65.0%
GCTCCTACTGGTCCTGCTGG+TGG - chr5.4:69312298-69312317 MS.gene39794:CDS 65.0%
GGCTTCGGCTGGACCTGTTC+CGG - chr5.4:69311829-69311848 MS.gene39794:CDS 65.0%
GGTCCTCCTGCTGCTGCGTA+TGG - chr5.4:69312463-69312482 MS.gene39794:CDS 65.0%
TCCCGGTGGCGCTCCTTACA+TGG - chr5.4:69312582-69312601 MS.gene39794:CDS 65.0%
TCCTCCACCGAATGCGCCAC+CGG - chr5.4:69311853-69311872 MS.gene39794:CDS 65.0%
TTCGGTGGAGGAGCCGGAAC+AGG + chr5.4:69311845-69311864 None:intergenic 65.0%
! GCATCGGACTGGGTGTCGTC+GGG - chr5.4:69311754-69311773 MS.gene39794:CDS 65.0%
! GGTGCGCCGGTGAATCAAGC+TGG - chr5.4:69312442-69312461 MS.gene39794:CDS 65.0%
!! CACCATCACGGTGGTGGTGG+TGG - chr5.4:69312202-69312221 MS.gene39794:CDS 65.0%
!! CCCATGTAAGGAGCGCCACC+GGG + chr5.4:69312586-69312605 None:intergenic 65.0%
!! GGTGGTGGTGGCCCATCACA+CGG - chr5.4:69312262-69312281 MS.gene39794:CDS 65.0%
!! TGGAGGTCTTGGTGGTGCGC+CGG - chr5.4:69312429-69312448 MS.gene39794:CDS 65.0%
GACACCGGTGGCGCATTCGG+TGG + chr5.4:69311860-69311879 None:intergenic 70.0%
! ACCGGTGGCGCATTCGGTGG+AGG + chr5.4:69311857-69311876 None:intergenic 70.0%
! GGCGCATTCGGTGGAGGAGC+CGG + chr5.4:69311851-69311870 None:intergenic 70.0%
! GGTGGTGGCCCATCACACGG+TGG - chr5.4:69312265-69312284 MS.gene39794:CDS 70.0%
!! AACGCCGGTGTGCCGGCTCA+GGG - chr5.4:69312328-69312347 MS.gene39794:CDS 70.0%
!! TAAGGAGCGCCACCGGGACC+AGG + chr5.4:69312580-69312599 None:intergenic 70.0%
GCGCCACCGGGACCAGGATG+AGG + chr5.4:69312574-69312593 None:intergenic 75.0%
!! CAACGCCGGTGTGCCGGCTC+AGG - chr5.4:69312327-69312346 MS.gene39794:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 69311113 69312612 69311113 ID=MS.gene39794
chr5.4 mRNA 69311113 69312612 69311113 ID=MS.gene39794.t1;Parent=MS.gene39794
chr5.4 exon 69311113 69312612 69311113 ID=MS.gene39794.t1.exon1;Parent=MS.gene39794.t1
chr5.4 CDS 69311113 69312612 69311113 ID=cds.MS.gene39794.t1;Parent=MS.gene39794.t1
Gene Sequence

>MS.gene39794

ATGGCCAAGAAACGAAAGCTTCGATCTTCTGACCCTGAACCCACCAAACAAGCCGAACCCGAACCCCAACAAGAAGTAGCCGAAGAAGAACCAACAACACAAGAAGAAGAAATCACACCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAAGAGCAAGAAGAGGAGGTTGCAGAAGAAGAAGAGGATGATCAACAAGGAGAAGACGAAACCCTAGAAAATCAACAACAAGAGGGTGGCGGTGAAGCTTCAAACAACGCTGCCGTGTCGGAGCAGACTGTGAAGGTGGAAGCTAACGGTGGTGGTGAGAACAATAACAACGAAGAACAAGAGGAAGATCTTGAATTGGAAGATGAGCCTGTTGAGAAGCTTCTAGAACCATTCACGAAGGAGCAATTACACGTGCTTGTGAAGCAAGCGGTTGAGAAGTATCCAGATCTGTCTGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTTGTTCATGGTCTTGGTTGGGATGCTACTGCTGAAACGCTAACCACCACGTTTTCGAAGTACGGTGAAATTGAAGATTGTAAGGCTGTGACTGATAAGAATTCTGGGAAATCGAAAGGTTATGCTTTTATTTTGTTTAAGCATCGGACTGGGTGTCGTCGGGCGTTAAAGCAGCCGCAGAAAGTGATTGGGAATAGGACTACATCGTGTCAATTGGCTTCGGCTGGACCTGTTCCGGCTCCTCCACCGAATGCGCCACCGGTGTCTGAGTATACTCAAAGGAAGATTTTTGTGAGTAATGTGAGTTCTGATATTGATCCTCAGAAGCTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTGGATGATGGTCCATTGGGGTTGGATAAGGCGACTGGGAAGCCAAAGGGTTTTGCGCTGTTTGTTTATAAGACGGTTGAGAGTGCTAAGAAGGCGTTGGAAGAGCCGAATAAGGTGTTCGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGTTACAACAAGGGGGGTCATTATCAGCAGCAGCAACATCATCATCAGCCGCATCATTCGCATCATCACCATCACGGTGGTGGTGGTGGTCACTACAATCCAAGGAAAGAAAAGAAGTATTCACATGGTGGTGGTGGCCCATCACACGGTGGTCACTTGATGGCTCCTACTGGTCCTGCTGGTGGTGGTTACAACGCCGGTGTGCCGGCTCAGGGATTGAATCCGGCTCTTGGACAGGCTTTGTCTGCTTTGCTTGCTAATCAAGGAGCTGGATTGGGACTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCGCCGGTGAATCAAGCTGGTCCTCCTGCTGCTGCGTATGGTAATCAGGCTGCTATGGGATATGGCCAGCCTGGGTTGCAGCCACAATACCAGAATCCTCAGCTGGGTCAAGGTGGTGGTGTTAGACCTCATCCTGGTCCCGGTGGCGCTCCTTACATGGGTCACTAG
Protein sequence

>MS.gene39794.t1

MAKKRKLRSSDPEPTKQAEPEPQQEVAEEEPTTQEEEITPIEEDQPQNEGEGEEEQEEEVAEEEEDDQQGEDETLENQQQEGGGEASNNAAVSEQTVKVEANGGGENNNNEEQEEDLELEDEPVEKLLEPFTKEQLHVLVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKNSGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAVDGPKGYNKGGHYQQQQHHHQPHHSHHHHHGGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPTGPAGGGYNAGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPAAAYGNQAAMGYGQPGLQPQYQNPQLGQGGGVRPHPGPGGAPYMGH