Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39929.t1 | XP_003590550.1 | 100 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 8.80E-65 | 256.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39929.t1 | Q8S857 | 90.6 | 139 | 8 | 2 | 1 | 134 | 1 | 139 | 4.3e-60 | 231.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39929.t1 | G7ICP3 | 100.0 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 6.3e-65 | 256.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76254 | MS.gene39929 | PPI |
MS.gene065078 | MS.gene39929 | PPI |
MS.gene029348 | MS.gene39929 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39929.t1 | MTR_1g071040 | 100.000 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 1.08e-93 | 266 |
MS.gene39929.t1 | MTR_1g114050 | 91.473 | 129 | 11 | 0 | 6 | 134 | 3 | 131 | 5.70e-82 | 236 |
MS.gene39929.t1 | MTR_1g011750 | 86.567 | 134 | 18 | 0 | 1 | 134 | 1 | 134 | 1.01e-79 | 231 |
MS.gene39929.t1 | MTR_1g011850 | 86.567 | 134 | 18 | 0 | 1 | 134 | 1 | 134 | 1.01e-79 | 231 |
MS.gene39929.t1 | MTR_4g048490 | 67.910 | 134 | 14 | 1 | 1 | 134 | 1 | 105 | 1.86e-47 | 149 |
MS.gene39929.t1 | MTR_7g027610 | 67.213 | 122 | 14 | 2 | 13 | 134 | 3 | 98 | 5.87e-44 | 140 |
MS.gene39929.t1 | MTR_2g082510 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.02e-39 | 130 |
MS.gene39929.t1 | MTR_2g082220 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.22e-39 | 129 |
MS.gene39929.t1 | MTR_7g108320 | 59.016 | 122 | 47 | 3 | 11 | 130 | 6 | 126 | 2.72e-39 | 129 |
MS.gene39929.t1 | MTR_7g114060 | 59.664 | 119 | 45 | 3 | 14 | 130 | 6 | 123 | 1.44e-38 | 127 |
MS.gene39929.t1 | MTR_7g114040 | 59.664 | 119 | 45 | 3 | 14 | 130 | 6 | 123 | 1.44e-38 | 127 |
MS.gene39929.t1 | MTR_7g093910 | 55.118 | 127 | 50 | 3 | 10 | 130 | 1 | 126 | 5.28e-38 | 126 |
MS.gene39929.t1 | MTR_2g096610 | 60.550 | 109 | 41 | 2 | 23 | 130 | 19 | 126 | 3.48e-36 | 121 |
MS.gene39929.t1 | MTR_0653s0030 | 61.111 | 108 | 17 | 1 | 5 | 112 | 15 | 97 | 4.60e-36 | 121 |
MS.gene39929.t1 | MTR_7g113160 | 55.752 | 113 | 48 | 2 | 19 | 130 | 19 | 130 | 5.97e-36 | 120 |
MS.gene39929.t1 | MTR_4g063280 | 60.550 | 109 | 41 | 2 | 23 | 130 | 15 | 122 | 1.83e-35 | 119 |
MS.gene39929.t1 | MTR_4g071150 | 62.500 | 104 | 37 | 2 | 28 | 130 | 26 | 128 | 8.63e-35 | 118 |
MS.gene39929.t1 | MTR_4g064967 | 60.952 | 105 | 39 | 2 | 27 | 130 | 25 | 128 | 1.30e-34 | 117 |
MS.gene39929.t1 | MTR_2g096570 | 60.952 | 105 | 39 | 2 | 27 | 130 | 24 | 127 | 1.80e-34 | 117 |
MS.gene39929.t1 | MTR_4g064005 | 61.538 | 104 | 38 | 2 | 28 | 130 | 26 | 128 | 1.86e-34 | 117 |
MS.gene39929.t1 | MTR_8g086640 | 58.716 | 109 | 43 | 2 | 27 | 134 | 25 | 132 | 2.56e-34 | 117 |
MS.gene39929.t1 | MTR_4g063410 | 60.000 | 105 | 40 | 2 | 27 | 130 | 25 | 128 | 5.83e-34 | 115 |
MS.gene39929.t1 | MTR_7g114050 | 49.593 | 123 | 48 | 5 | 10 | 130 | 4 | 114 | 6.31e-27 | 97.4 |
MS.gene39929.t1 | MTR_4g063300 | 62.687 | 67 | 24 | 1 | 55 | 120 | 17 | 83 | 1.66e-20 | 80.9 |
MS.gene39929.t1 | MTR_6g005150 | 45.283 | 106 | 47 | 4 | 27 | 130 | 27 | 123 | 3.00e-19 | 78.2 |
MS.gene39929.t1 | MTR_7g427690 | 78.947 | 38 | 8 | 0 | 96 | 133 | 412 | 449 | 3.05e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39929.t1 | AT3G54560 | 91.912 | 136 | 9 | 1 | 1 | 134 | 1 | 136 | 5.04e-79 | 229 |
MS.gene39929.t1 | AT3G54560 | 91.912 | 136 | 9 | 1 | 1 | 134 | 1 | 136 | 5.04e-79 | 229 |
MS.gene39929.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene39929.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene39929.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene39929.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene39929.t1 | AT1G52740 | 82.836 | 134 | 23 | 0 | 1 | 134 | 1 | 134 | 2.06e-71 | 210 |
MS.gene39929.t1 | AT4G13570 | 78.022 | 91 | 20 | 0 | 34 | 124 | 28 | 118 | 3.18e-47 | 148 |
MS.gene39929.t1 | AT4G13570 | 78.889 | 90 | 19 | 0 | 35 | 124 | 35 | 124 | 6.47e-47 | 148 |
MS.gene39929.t1 | AT3G20670 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 6.35e-40 | 130 |
MS.gene39929.t1 | AT4G27230 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.04e-39 | 130 |
MS.gene39929.t1 | AT4G27230 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.04e-39 | 130 |
MS.gene39929.t1 | AT5G54640 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.13e-39 | 130 |
MS.gene39929.t1 | AT1G51060 | 63.889 | 108 | 37 | 2 | 24 | 130 | 14 | 120 | 4.16e-39 | 128 |
MS.gene39929.t1 | AT5G02560 | 60.177 | 113 | 43 | 2 | 23 | 134 | 21 | 132 | 1.12e-38 | 128 |
MS.gene39929.t1 | AT1G08880 | 59.829 | 117 | 44 | 3 | 14 | 128 | 9 | 124 | 1.56e-38 | 127 |
MS.gene39929.t1 | AT1G54690 | 59.829 | 117 | 44 | 3 | 14 | 128 | 9 | 124 | 1.94e-38 | 127 |
MS.gene39929.t1 | AT5G27670 | 60.177 | 113 | 43 | 2 | 19 | 130 | 18 | 129 | 9.18e-37 | 123 |
MS.gene39929.t1 | AT5G59870 | 59.633 | 109 | 42 | 2 | 23 | 130 | 21 | 128 | 7.33e-35 | 118 |
MS.gene39929.t1 | AT5G02560 | 49.635 | 137 | 43 | 3 | 23 | 134 | 21 | 156 | 2.88e-33 | 115 |
Find 41 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAACAGCTGCAGTGTATT+TGG | 0.243205 | 1.4:+58182052 | MS.gene39929:CDS |
GGCATTTGCAGCTTGCTATC+AGG | 0.247896 | 1.4:+58182162 | MS.gene39929:CDS |
TTCTTCTCGTGCTGGAATTC+AGG | 0.284428 | 1.4:+58181000 | MS.gene39929:CDS |
AAAGCAAAGAATTCATTCTT+TGG | 0.314617 | 1.4:-58182276 | None:intergenic |
GCTGAAGTTCTTGAGCTTGC+TGG | 0.321500 | 1.4:+58182098 | MS.gene39929:CDS |
AGTGTATTTGGCATCCATTC+TGG | 0.360664 | 1.4:+58182064 | MS.gene39929:CDS |
CAGCAATTGTTCCCTTGATA+AGG | 0.371937 | 1.4:-58182205 | None:intergenic |
CTTATCAAGGGAACAATTGC+TGG | 0.372156 | 1.4:+58182206 | MS.gene39929:CDS |
CTCCAACACGTCCATTAGCT+TGG | 0.439513 | 1.4:-58182031 | None:intergenic |
AGCAATTGTTCCCTTGATAA+GGG | 0.441041 | 1.4:-58182204 | None:intergenic |
AAGCAAAGAGTCCAAGCTAA+TGG | 0.447447 | 1.4:+58182020 | MS.gene39929:CDS |
ACTTCTCGTTCTTCTCGTGC+TGG | 0.468244 | 1.4:+58180992 | MS.gene39929:CDS |
AAATGCTAGCAAAGATTTGA+AGG | 0.477120 | 1.4:+58182121 | MS.gene39929:CDS |
CTCTTTGCTTCAGCTGTCTG+TGG | 0.485476 | 1.4:-58182007 | None:intergenic |
GCATTTGCAGCTTGCTATCA+GGG | 0.487874 | 1.4:+58182163 | MS.gene39929:CDS |
TCAGGTGATTAAGCAATGGC+AGG | 0.495436 | 1.4:+58180899 | None:intergenic |
ATGGCAGGAAAAGGAGGAAA+AGG | 0.512104 | 1.4:+58180914 | MS.gene39929:CDS |
GGAACTTGATACCCTTATCA+AGG | 0.512125 | 1.4:+58182193 | MS.gene39929:CDS |
GAAAACCACCGCGGCTAACA+AGG | 0.513949 | 1.4:+58180949 | MS.gene39929:CDS |
GATTAAGCAATGGCAGGAAA+AGG | 0.523608 | 1.4:+58180905 | None:intergenic |
TTTGTCCTTGTTAGCCGCGG+TGG | 0.547910 | 1.4:-58180954 | None:intergenic |
GTCCAAGCTAATGGACGTGT+TGG | 0.548624 | 1.4:+58182029 | MS.gene39929:CDS |
ATGGTGATTGTAGTTTCCTG+TGG | 0.557642 | 1.4:+58181977 | MS.gene39929:intron |
GTCTTTGTCCTTGTTAGCCG+CGG | 0.560155 | 1.4:-58180957 | None:intergenic |
GCAAAGATTTGAAGGTGAAG+AGG | 0.563947 | 1.4:+58182129 | MS.gene39929:CDS |
AGCAGTCAGATACTCCAGAA+TGG | 0.591746 | 1.4:-58182078 | None:intergenic |
ATAGCAAGCTGCAAATGCCT+TGG | 0.592261 | 1.4:-58182158 | None:intergenic |
GCTTGCTATCAGGGGAGATG+AGG | 0.593400 | 1.4:+58182172 | MS.gene39929:CDS |
TGGTGATTGTAGTTTCCTGT+GGG | 0.598401 | 1.4:+58181978 | MS.gene39929:intron |
TAAGCAATGGCAGGAAAAGG+AGG | 0.606722 | 1.4:+58180908 | None:intergenic |
AGCACGAGAAGAACGAGAAG+TGG | 0.609010 | 1.4:-58180990 | None:intergenic |
CATTTGCAGCTTGCTATCAG+GGG | 0.612353 | 1.4:+58182164 | MS.gene39929:CDS |
GATTGTAGTTTCCTGTGGGT+AGG | 0.612972 | 1.4:+58181982 | MS.gene39929:intron |
AAGGGAACAATTGCTGGTGG+TGG | 0.621502 | 1.4:+58182212 | MS.gene39929:CDS |
GAACTTGATACCCTTATCAA+GGG | 0.630061 | 1.4:+58182194 | MS.gene39929:CDS |
ATCAAGGACTTGTGGATGTG+AGG | 0.631787 | 1.4:-58182242 | None:intergenic |
GCACGAGAAGAACGAGAAGT+GGG | 0.642443 | 1.4:-58180989 | None:intergenic |
TGTCTGTGGATCCTACCCAC+AGG | 0.647982 | 1.4:-58181993 | None:intergenic |
ATCAAGGGAACAATTGCTGG+TGG | 0.659902 | 1.4:+58182209 | MS.gene39929:CDS |
AGGTGAAGAGGATTACACCA+AGG | 0.739394 | 1.4:+58182141 | MS.gene39929:CDS |
CGTTGCAGCGAAAACCACCG+CGG | 0.789660 | 1.4:+58180940 | MS.gene39929:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAGTTTAATTTTGATTTA+AGG | + | chr1.4:58181644-58181663 | MS.gene39929:intron | 10.0% |
!! | ATCTGTAAATGATAATTAAA+AGG | - | chr1.4:58181885-58181904 | None:intergenic | 15.0% |
!!! | TTTTCTGTGTAAATTTTTTA+GGG | + | chr1.4:58181174-58181193 | MS.gene39929:intron | 15.0% |
!!! | TTTTTCTGTGTAAATTTTTT+AGG | + | chr1.4:58181173-58181192 | MS.gene39929:intron | 15.0% |
!! | TAACAAAACAAAAATAACAG+AGG | - | chr1.4:58181924-58181943 | None:intergenic | 20.0% |
!! | TTAGCAAAGATTAAAACTAT+GGG | - | chr1.4:58181240-58181259 | None:intergenic | 20.0% |
!! | TTTAGCAAAGATTAAAACTA+TGG | - | chr1.4:58181241-58181260 | None:intergenic | 20.0% |
!!! | ATTAACTGTAAAATTTGCTA+TGG | + | chr1.4:58181958-58181977 | MS.gene39929:intron | 20.0% |
!!! | CGATTTTCTTTATTTTTCTA+GGG | + | chr1.4:58181054-58181073 | MS.gene39929:intron | 20.0% |
!!! | CTCTGTTCTTTAATTTTTTA+GGG | + | chr1.4:58181280-58181299 | MS.gene39929:intron | 20.0% |
!!! | TCGATTTTCTTTATTTTTCT+AGG | + | chr1.4:58181053-58181072 | MS.gene39929:intron | 20.0% |
!!! | TCTCTGTTCTTTAATTTTTT+AGG | + | chr1.4:58181279-58181298 | MS.gene39929:intron | 20.0% |
!!! | TCTTTAATTTTTTAGGGTTA+GGG | + | chr1.4:58181286-58181305 | MS.gene39929:intron | 20.0% |
!!! | TTCTTTAATTTTTTAGGGTT+AGG | + | chr1.4:58181285-58181304 | MS.gene39929:intron | 20.0% |
! | AAAATCGAAATAACGAAGAA+AGG | - | chr1.4:58181041-58181060 | None:intergenic | 25.0% |
! | AAATCGAAATAACGAAGAAA+GGG | - | chr1.4:58181040-58181059 | None:intergenic | 25.0% |
! | AAGAAAAAACATGTTATCAG+GGG | - | chr1.4:58181402-58181421 | None:intergenic | 25.0% |
! | ACAAAAATAACAGAGGAAAA+TGG | - | chr1.4:58181917-58181936 | None:intergenic | 25.0% |
! | ACAAGAAAAAACATGTTATC+AGG | - | chr1.4:58181404-58181423 | None:intergenic | 25.0% |
! | ATCTTAACACTATTAGTGTA+TGG | + | chr1.4:58181777-58181796 | MS.gene39929:intron | 25.0% |
! | CAAAAATAACAGAGGAAAAT+GGG | - | chr1.4:58181916-58181935 | None:intergenic | 25.0% |
! | CAAGAAAAAACATGTTATCA+GGG | - | chr1.4:58181403-58181422 | None:intergenic | 25.0% |
! | TATATAATCAAACCCTAGAT+GGG | - | chr1.4:58181121-58181140 | None:intergenic | 25.0% |
! | TGAGATTAAATTATTGCCTT+TGG | + | chr1.4:58181839-58181858 | MS.gene39929:intron | 25.0% |
!!! | GTAACTTTAGAATTAGTGTA+TGG | + | chr1.4:58181712-58181731 | MS.gene39929:intron | 25.0% |
!!! | GTGTAAATTTTTTAGGGTTA+GGG | + | chr1.4:58181180-58181199 | MS.gene39929:intron | 25.0% |
!!! | TCTTTATTTTTCTAGGGTTA+GGG | + | chr1.4:58181060-58181079 | MS.gene39929:intron | 25.0% |
!!! | TGTGTAAATTTTTTAGGGTT+AGG | + | chr1.4:58181179-58181198 | MS.gene39929:intron | 25.0% |
!!! | TTCTTTATTTTTCTAGGGTT+AGG | + | chr1.4:58181059-58181078 | MS.gene39929:intron | 25.0% |
AAATGCTAGCAAAGATTTGA+AGG | + | chr1.4:58182121-58182140 | MS.gene39929:CDS | 30.0% | |
AACATCTACATGAAATCCAA+AGG | - | chr1.4:58181858-58181877 | None:intergenic | 30.0% | |
AATTCTCAAATACCCATCTA+GGG | + | chr1.4:58181106-58181125 | MS.gene39929:intron | 30.0% | |
ATAACGAAGAAAGGGAAAAA+AGG | - | chr1.4:58181032-58181051 | None:intergenic | 30.0% | |
CTATATAATCAAACCCTAGA+TGG | - | chr1.4:58181122-58181141 | None:intergenic | 30.0% | |
TAACGAAGAAAGGGAAAAAA+GGG | - | chr1.4:58181031-58181050 | None:intergenic | 30.0% | |
TAATTCTCAAATACCCATCT+AGG | + | chr1.4:58181105-58181124 | MS.gene39929:intron | 30.0% | |
TTTATAATCAACCCCCAATT+GGG | - | chr1.4:58181345-58181364 | None:intergenic | 30.0% | |
! | CAAATGTCCTTTTATTCAAC+CGG | + | chr1.4:58181804-58181823 | MS.gene39929:intron | 30.0% |
! | TTTGAAACAGAATTAAGCGA+TGG | + | chr1.4:58181309-58181328 | MS.gene39929:intron | 30.0% |
!!! | GCAGAGAAGTAATTTTTTGT+TGG | + | chr1.4:58181615-58181634 | MS.gene39929:intron | 30.0% |
AATCTCAAAAATCAGCTCTC+CGG | - | chr1.4:58181826-58181845 | None:intergenic | 35.0% | |
AGCAATTGTTCCCTTGATAA+GGG | - | chr1.4:58182207-58182226 | None:intergenic | 35.0% | |
CTTTATAATCAACCCCCAAT+TGG | - | chr1.4:58181346-58181365 | None:intergenic | 35.0% | |
GAACTTGATACCCTTATCAA+GGG | + | chr1.4:58182194-58182213 | MS.gene39929:CDS | 35.0% | |
! | ACAGAATTAAGCGATGGTTT+TGG | + | chr1.4:58181315-58181334 | MS.gene39929:intron | 35.0% |
! | CAGAATTAAGCGATGGTTTT+GGG | + | chr1.4:58181316-58181335 | MS.gene39929:intron | 35.0% |
! | TTTTGTTGATCAAGGACTTG+TGG | - | chr1.4:58182253-58182272 | None:intergenic | 35.0% |
!!! | ATTTTTCTAGGGTTAGGGTT+TGG | + | chr1.4:58181065-58181084 | MS.gene39929:intron | 35.0% |
!!! | TTTGGCAGTTTTGTTGATCA+AGG | - | chr1.4:58182261-58182280 | None:intergenic | 35.0% |
AAGCAAAGAGTCCAAGCTAA+TGG | + | chr1.4:58182020-58182039 | MS.gene39929:CDS | 40.0% | |
AGTGTATTTGGCATCCATTC+TGG | + | chr1.4:58182064-58182083 | MS.gene39929:CDS | 40.0% | |
ATGGTGATTGTAGTTTCCTG+TGG | + | chr1.4:58181977-58181996 | MS.gene39929:intron | 40.0% | |
CAGCAATTGTTCCCTTGATA+AGG | - | chr1.4:58182208-58182227 | None:intergenic | 40.0% | |
CTTATCAAGGGAACAATTGC+TGG | + | chr1.4:58182206-58182225 | MS.gene39929:CDS | 40.0% | |
GCAAAGATTTGAAGGTGAAG+AGG | + | chr1.4:58182129-58182148 | MS.gene39929:CDS | 40.0% | |
GGAACTTGATACCCTTATCA+AGG | + | chr1.4:58182193-58182212 | MS.gene39929:CDS | 40.0% | |
TGGTGATTGTAGTTTCCTGT+GGG | + | chr1.4:58181978-58181997 | MS.gene39929:intron | 40.0% | |
!!! | ATGGTTTTGGGATACCCAAT+TGG | + | chr1.4:58181328-58181347 | MS.gene39929:intron | 40.0% |
!!! | TGGTTTTGGGATACCCAATT+GGG | + | chr1.4:58181329-58181348 | MS.gene39929:intron | 40.0% |
AGCAACAGCTGCAGTGTATT+TGG | + | chr1.4:58182052-58182071 | MS.gene39929:CDS | 45.0% | |
AGCAGTCAGATACTCCAGAA+TGG | - | chr1.4:58182081-58182100 | None:intergenic | 45.0% | |
AGGTGAAGAGGATTACACCA+AGG | + | chr1.4:58182141-58182160 | MS.gene39929:CDS | 45.0% | |
ATAGCAAGCTGCAAATGCCT+TGG | - | chr1.4:58182161-58182180 | None:intergenic | 45.0% | |
ATCAAGGACTTGTGGATGTG+AGG | - | chr1.4:58182245-58182264 | None:intergenic | 45.0% | |
ATCAAGGGAACAATTGCTGG+TGG | + | chr1.4:58182209-58182228 | MS.gene39929:CDS | 45.0% | |
ATGGCAGGAAAAGGAGGAAA+AGG | + | chr1.4:58180914-58180933 | MS.gene39929:CDS | 45.0% | |
CAGCTCTCCGGTTGAATAAA+AGG | - | chr1.4:58181814-58181833 | None:intergenic | 45.0% | |
GATTGTAGTTTCCTGTGGGT+AGG | + | chr1.4:58181982-58182001 | MS.gene39929:intron | 45.0% | |
TTCTTCTCGTGCTGGAATTC+AGG | + | chr1.4:58181000-58181019 | MS.gene39929:CDS | 45.0% | |
! | TAGGGTTAGGGTTTGGAACA+AGG | + | chr1.4:58181072-58181091 | MS.gene39929:intron | 45.0% |
!! | CATTTGCAGCTTGCTATCAG+GGG | + | chr1.4:58182164-58182183 | MS.gene39929:CDS | 45.0% |
!! | GCATTTGCAGCTTGCTATCA+GGG | + | chr1.4:58182163-58182182 | MS.gene39929:CDS | 45.0% |
!!! | GGTTTTGGGATACCCAATTG+GGG | + | chr1.4:58181330-58181349 | MS.gene39929:intron | 45.0% |
!!! | GTTTTGGGATACCCAATTGG+GGG | + | chr1.4:58181331-58181350 | MS.gene39929:intron | 45.0% |
!!! | TTTATTTTTTATTTTTTTTG+TGG | + | chr1.4:58181539-58181558 | MS.gene39929:intron | 5.0% |
AAGGGAACAATTGCTGGTGG+TGG | + | chr1.4:58182212-58182231 | MS.gene39929:CDS | 50.0% | |
ACTTCTCGTTCTTCTCGTGC+TGG | + | chr1.4:58180992-58181011 | MS.gene39929:CDS | 50.0% | |
AGCACGAGAAGAACGAGAAG+TGG | - | chr1.4:58180993-58181012 | None:intergenic | 50.0% | |
CTCCAACACGTCCATTAGCT+TGG | - | chr1.4:58182034-58182053 | None:intergenic | 50.0% | |
CTCTTTGCTTCAGCTGTCTG+TGG | - | chr1.4:58182010-58182029 | None:intergenic | 50.0% | |
GCACGAGAAGAACGAGAAGT+GGG | - | chr1.4:58180992-58181011 | None:intergenic | 50.0% | |
GCTGAAGTTCTTGAGCTTGC+TGG | + | chr1.4:58182098-58182117 | MS.gene39929:CDS | 50.0% | |
GTCTTTGTCCTTGTTAGCCG+CGG | - | chr1.4:58180960-58180979 | None:intergenic | 50.0% | |
! | GTCCAAGCTAATGGACGTGT+TGG | + | chr1.4:58182029-58182048 | MS.gene39929:CDS | 50.0% |
!! | GGCATTTGCAGCTTGCTATC+AGG | + | chr1.4:58182162-58182181 | MS.gene39929:CDS | 50.0% |
GAAAACCACCGCGGCTAACA+AGG | + | chr1.4:58180949-58180968 | MS.gene39929:CDS | 55.0% | |
TGTCTGTGGATCCTACCCAC+AGG | - | chr1.4:58181996-58182015 | None:intergenic | 55.0% | |
TTTGTCCTTGTTAGCCGCGG+TGG | - | chr1.4:58180957-58180976 | None:intergenic | 55.0% | |
!! | GCTTGCTATCAGGGGAGATG+AGG | + | chr1.4:58182172-58182191 | MS.gene39929:CDS | 55.0% |
CGTTGCAGCGAAAACCACCG+CGG | + | chr1.4:58180940-58180959 | MS.gene39929:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 58180914 | 58182286 | 58180914 | ID=MS.gene39929 |
chr1.4 | mRNA | 58180914 | 58182286 | 58180914 | ID=MS.gene39929.t1;Parent=MS.gene39929 |
chr1.4 | exon | 58180914 | 58181021 | 58180914 | ID=MS.gene39929.t1.exon1;Parent=MS.gene39929.t1 |
chr1.4 | CDS | 58180914 | 58181021 | 58180914 | ID=cds.MS.gene39929.t1;Parent=MS.gene39929.t1 |
chr1.4 | exon | 58181990 | 58182286 | 58181990 | ID=MS.gene39929.t1.exon2;Parent=MS.gene39929.t1 |
chr1.4 | CDS | 58181990 | 58182286 | 58181990 | ID=cds.MS.gene39929.t1;Parent=MS.gene39929.t1 |
Gene Sequence |
Protein sequence |