AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39939

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39939.t1 MTR_2g099990 53.403 382 141 10 6 370 1 362 1.70e-115 347
MS.gene39939.t1 MTR_8g017210 52.956 389 116 11 6 352 18 381 2.40e-115 348
MS.gene39939.t1 MTR_1g016010 55.987 309 100 6 35 343 37 309 1.51e-112 338
MS.gene39939.t1 MTR_4g059870 55.556 315 113 8 36 327 34 344 3.69e-108 329
MS.gene39939.t1 MTR_1g094115 63.878 263 70 7 40 296 47 290 3.45e-105 323
MS.gene39939.t1 MTR_2g093960 75.000 184 46 0 39 222 31 214 4.08e-105 318
MS.gene39939.t1 MTR_1g112270 69.268 205 54 2 43 239 47 250 8.46e-101 312
MS.gene39939.t1 MTR_2g090745 45.966 409 146 13 50 392 17 416 3.19e-99 304
MS.gene39939.t1 MTR_2g099990 55.272 313 114 9 64 370 1 293 2.76e-98 300
MS.gene39939.t1 MTR_1g112270 77.907 172 26 2 43 203 47 217 4.59e-97 303
MS.gene39939.t1 MTR_1g094115 57.414 263 70 8 40 296 47 273 9.61e-88 277
MS.gene39939.t1 MTR_2g017720 73.387 124 27 2 42 165 315 432 8.68e-54 186
MS.gene39939.t1 MTR_3g102000 65.000 100 27 3 67 162 36 131 3.79e-36 133
MS.gene39939.t1 MTR_5g030560 78.000 50 11 0 45 94 11 60 2.48e-21 88.2
MS.gene39939.t1 MTR_1g093095 35.172 145 80 5 61 193 107 249 3.22e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39939.t1 AT4G02670 50.500 400 125 9 23 411 38 375 1.68e-120 357
MS.gene39939.t1 AT4G02670 50.500 400 125 9 23 411 36 373 1.84e-120 357
MS.gene39939.t1 AT3G50700 53.425 365 119 9 2 333 1 347 1.57e-113 341
MS.gene39939.t1 AT1G55110 72.603 219 52 3 6 216 21 239 4.59e-111 335
MS.gene39939.t1 AT1G55110 72.603 219 52 3 6 216 21 239 4.59e-111 335
MS.gene39939.t1 AT1G55110 72.603 219 52 3 6 216 21 239 4.59e-111 335
MS.gene39939.t1 AT5G03150 81.768 181 30 1 40 217 53 233 2.29e-107 327
MS.gene39939.t1 AT5G66730 69.643 224 55 4 2 221 1 215 1.91e-106 325
MS.gene39939.t1 AT1G03840 82.184 174 30 1 33 206 34 206 9.37e-106 323
MS.gene39939.t1 AT3G45260 83.133 166 28 0 39 204 38 203 1.44e-105 320
MS.gene39939.t1 AT3G45260 83.133 166 28 0 39 204 38 203 1.44e-105 320
MS.gene39939.t1 AT3G13810 85.030 167 25 0 37 203 48 214 2.56e-105 322
MS.gene39939.t1 AT3G13810 85.030 167 25 0 37 203 62 228 2.89e-105 322
MS.gene39939.t1 AT3G13810 85.030 167 25 0 37 203 67 233 2.90e-105 322
MS.gene39939.t1 AT3G13810 85.030 167 25 0 37 203 67 233 2.90e-105 322
MS.gene39939.t1 AT5G44160 54.277 339 115 11 19 326 20 349 5.19e-104 317
MS.gene39939.t1 AT5G60470 73.438 192 42 2 40 222 44 235 3.61e-103 315
MS.gene39939.t1 AT5G60470 73.438 192 42 2 40 222 40 231 4.47e-103 315
MS.gene39939.t1 AT1G14580 78.286 175 32 2 34 203 42 215 3.84e-102 312
MS.gene39939.t1 AT1G14580 78.286 175 32 2 34 203 42 215 3.84e-102 312
MS.gene39939.t1 AT1G03840 81.034 174 30 2 33 206 34 204 6.76e-102 313
MS.gene39939.t1 AT1G14580 78.286 175 32 2 34 203 56 229 8.11e-102 312
MS.gene39939.t1 AT2G02080 77.011 174 35 2 34 203 44 216 3.43e-101 311
MS.gene39939.t1 AT2G02080 77.011 174 35 2 34 203 44 216 3.43e-101 311
MS.gene39939.t1 AT2G02080 77.011 174 35 2 34 203 44 216 3.43e-101 311
MS.gene39939.t1 AT2G02080 77.011 174 35 2 34 203 44 216 3.43e-101 311
MS.gene39939.t1 AT2G02070 83.537 164 26 1 40 203 52 214 1.60e-100 313
MS.gene39939.t1 AT2G02070 83.537 164 26 1 40 203 52 214 1.60e-100 313
MS.gene39939.t1 AT3G13810 86.928 153 20 0 51 203 68 220 5.20e-98 303
MS.gene39939.t1 AT3G13810 86.928 153 20 0 51 203 82 234 7.40e-98 303
MS.gene39939.t1 AT5G60470 72.376 181 41 2 51 222 46 226 1.84e-95 295
MS.gene39939.t1 AT5G44160 54.221 308 105 10 50 326 8 310 6.76e-95 293
MS.gene39939.t1 AT2G02080 80.000 140 27 1 64 203 1 139 1.03e-85 269
MS.gene39939.t1 AT2G02080 80.000 140 27 1 64 203 1 139 1.03e-85 269
MS.gene39939.t1 AT2G01940 62.573 171 59 2 27 196 35 201 4.21e-75 242
MS.gene39939.t1 AT1G68130 63.462 156 56 1 40 194 41 196 2.26e-72 234
MS.gene39939.t1 AT1G25250 63.694 157 55 2 40 194 33 189 3.98e-72 232
MS.gene39939.t1 AT2G01940 61.628 172 60 3 27 196 35 202 1.54e-71 233
MS.gene39939.t1 AT1G25250 64.626 147 50 2 50 194 20 166 1.14e-68 223
MS.gene39939.t1 AT2G01940 62.500 112 41 1 86 196 1 112 8.42e-46 162
MS.gene39939.t1 AT1G68130 60.909 110 42 1 86 194 1 110 9.65e-45 159
MS.gene39939.t1 AT1G25250 60.360 111 42 2 86 194 1 111 9.01e-44 155
MS.gene39939.t1 AT5G22890 34.911 169 95 4 38 193 188 354 1.08e-23 102
MS.gene39939.t1 AT1G34370 35.443 158 89 4 49 193 14 171 1.56e-23 100
MS.gene39939.t1 AT1G34370 35.443 158 89 4 49 193 224 381 4.21e-23 102
MS.gene39939.t1 AT1G34370 35.443 158 89 4 49 193 224 381 4.21e-23 102
MS.gene39939.t1 AT1G13290 33.987 153 88 6 61 202 93 243 1.30e-19 89.4
MS.gene39939.t1 AT1G08290 35.260 173 91 8 40 193 142 312 5.65e-19 88.2
MS.gene39939.t1 AT1G34790 36.000 150 85 5 53 193 129 276 8.20e-19 87.0
MS.gene39939.t1 AT3G20880 35.211 142 81 5 61 193 248 387 1.37e-18 87.8
MS.gene39939.t1 AT3G57670 34.694 147 85 5 56 193 204 348 1.50e-18 87.4
MS.gene39939.t1 AT1G51220 33.333 147 87 5 56 193 165 309 3.75e-18 85.9

Find 122 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGGTTGGTGTGAAAATT+TGG 0.168178 1.4:+58354947 None:intergenic
GATGATGTCATTATGCTCTT+AGG 0.239488 1.4:+58354887 None:intergenic
TGATGTGGCTTTGTTGGTTT+TGG 0.242334 1.4:+58355047 None:intergenic
AGGCTGCTGTGAGGAATTTA+TGG 0.249876 1.4:+58358127 None:intergenic
GTGTGAAAATTTGGAGATTC+AGG 0.253132 1.4:+58354956 None:intergenic
CAGCTCAACATTGGCCAGTT+TGG 0.266748 1.4:-58354713 MS.gene39939:CDS
TGGAAACTTTGTTGTTGATT+TGG 0.272173 1.4:+58355067 None:intergenic
AGGAAGAGAGATTGGACTAA+TGG 0.292623 1.4:+58355094 None:intergenic
GTTTGATGATGATGACTTAT+TGG 0.312377 1.4:+58354740 None:intergenic
GGAAACTTTGTTGTTGATTT+GGG 0.314994 1.4:+58355068 None:intergenic
TTGTGGTGGTGATGGCTAAT+TGG 0.316995 1.4:+58355125 None:intergenic
GAGACCGTCGTCGTTCTTTC+CGG 0.318538 1.4:+58354631 None:intergenic
TTCTGAGAAAGAAGTGGAAT+TGG 0.320642 1.4:+58358193 None:intergenic
CCCAGGTGATGTGGCTTTGT+TGG 0.325238 1.4:+58355041 None:intergenic
CAGTCCCAACAAGCAGGTTT+TGG 0.330445 1.4:-58354470 MS.gene39939:CDS
TTGGGAAGAGGAAGAGAGAT+TGG 0.331874 1.4:+58355086 None:intergenic
TTTGATGAGGTTGGTGTTGA+TGG 0.335033 1.4:+58354513 None:intergenic
GACTAATGGGTTTGTGTTTG+TGG 0.349306 1.4:+58355108 None:intergenic
AAAACCAAAACCTGCTTGTT+GGG 0.357546 1.4:+58354466 None:intergenic
TGTGGTGGAGAGTATTATTA+AGG 0.363128 1.4:+58354987 None:intergenic
AGGGCTCTTGGAGATCTTAC+AGG 0.369272 1.4:-58357520 MS.gene39939:CDS
GGTCTCACGAGGGACTTTCT+TGG 0.373376 1.4:-58354614 MS.gene39939:CDS
CTAGGGTTAGGGTTTGGTTG+AGG 0.381467 1.4:+58355013 None:intergenic
GGAAGAGAGATTGGACTAAT+GGG 0.383729 1.4:+58355095 None:intergenic
ATGATGTCATTATGCTCTTA+GGG 0.385655 1.4:+58354888 None:intergenic
TTATTAAGGTTGCTAGGGTT+AGG 0.389295 1.4:+58355001 None:intergenic
CTTACCAACGGCGGAGGAAA+TGG 0.400342 1.4:-58354590 MS.gene39939:CDS
TCTATGCTGTTCATTCTGAT+TGG 0.408547 1.4:-58357432 MS.gene39939:CDS
TATTAGTTACCTGGGTTACC+AGG 0.411020 1.4:+58358077 None:intergenic
ACCAACAAAGCCACATCACC+TGG 0.418644 1.4:-58355042 MS.gene39939:CDS
GGGTTAGGGTTTGGTTGAGG+TGG 0.424046 1.4:+58355016 None:intergenic
TATTAAGGTTGCTAGGGTTA+GGG 0.426783 1.4:+58355002 None:intergenic
CATAACCCTTCAAGGGCTCT+TGG 0.427551 1.4:-58357532 MS.gene39939:CDS
AGGAGGCTGAGAAGAGAGGT+TGG 0.428318 1.4:+58354934 None:intergenic
CATTTCCTCCGCCGTTGGTA+AGG 0.428942 1.4:+58354591 None:intergenic
GGTTAGGGTTTGGTTGAGGT+GGG 0.430124 1.4:+58355017 None:intergenic
AAAGCTATCACTTCAGCATC+AGG 0.433390 1.4:+58357742 None:intergenic
AGAGTATTATTAAGGTTGCT+AGG 0.450934 1.4:+58354995 None:intergenic
TTTGTTGTTGATTTGGGAAG+AGG 0.451023 1.4:+58355074 None:intergenic
TTCCTTTGCTTCAACTTCCA+TGG 0.454202 1.4:+58357613 None:intergenic
GTTTGGTTGAGGTGGGTCCC+AGG 0.454878 1.4:+58355024 None:intergenic
GAAAACCAAAACCTGCTTGT+TGG 0.456770 1.4:+58354465 None:intergenic
GTTTGTGTTTGTGGTGGTGA+TGG 0.463157 1.4:+58355117 None:intergenic
AGGTTGCTAGGGTTAGGGTT+TGG 0.463790 1.4:+58355007 None:intergenic
GTGTTCATCATAACCCTTCA+AGG 0.465914 1.4:-58357540 MS.gene39939:CDS
TTTGCTTCAACTTCCATGGT+AGG 0.474534 1.4:+58357617 None:intergenic
GTGTGGTGACATGGCAGCAC+TGG 0.477358 1.4:+58354832 None:intergenic
GCTGAGTCACTGATCCAAAC+TGG 0.481577 1.4:+58354699 None:intergenic
GTCGGTGCCGCCGCCATCAC+AGG 0.486782 1.4:-58354773 MS.gene39939:CDS
GAGATTCAGGCTTGATGTTG+TGG 0.492741 1.4:+58354969 None:intergenic
GGGTTTGTGTGATGAAGAAA+TGG 0.496225 1.4:+58354908 None:intergenic
AAGGATATGCTAACATTCAC+GGG 0.504112 1.4:-58354548 MS.gene39939:CDS
AGGAAATGGTGGTGAGTCCT+TGG 0.504475 1.4:-58354576 MS.gene39939:CDS
TTTATATTCTCTAGTACCAC+AGG 0.507908 1.4:+58357393 None:intergenic
GAGTATTATTAAGGTTGCTA+GGG 0.512977 1.4:+58354996 None:intergenic
TGTTTCTTCTGAGAAAGAAG+TGG 0.516927 1.4:+58358187 None:intergenic
GTGGAATTGGACATTAGTGC+AGG 0.522525 1.4:+58358206 None:intergenic
GATGATGACTTATTGGTGGT+TGG 0.524796 1.4:+58354747 None:intergenic
TGATGATGATGACTTATTGG+TGG 0.525880 1.4:+58354743 None:intergenic
TGGTGGTTGGCTGCCTGTGA+TGG 0.526594 1.4:+58354760 None:intergenic
AACATGAGAGGCTGCCTCAC+CGG 0.528047 1.4:-58354650 MS.gene39939:CDS
AAAGGATATGCTAACATTCA+CGG 0.528137 1.4:-58354549 MS.gene39939:CDS
GTGTGTGAGATCTGCAACAA+GGG 0.528425 1.4:-58357685 MS.gene39939:CDS
TGATGAACACATGAAGGCTC+TGG 0.528458 1.4:+58357553 None:intergenic
GAGGTGGGTCCCAGGTGATG+TGG 0.529471 1.4:+58355032 None:intergenic
GTAGAGGAGGCTGAGAAGAG+AGG 0.530169 1.4:+58354930 None:intergenic
CTTGGCCTTACCAACGGCGG+AGG 0.533245 1.4:-58354596 MS.gene39939:CDS
AACAACTGTTCCTGAGTCGT+GGG 0.538679 1.4:-58354435 MS.gene39939:CDS
AATTTATGGTTGAAACTAAG+TGG 0.539157 1.4:+58358141 None:intergenic
ACCACCATTTCCTCCGCCGT+TGG 0.540479 1.4:+58354586 None:intergenic
GTCCTCTCCTATGTAGCTGT+AGG 0.540553 1.4:+58357644 None:intergenic
TGTGATGGCGGCGGCACCGA+CGG 0.547521 1.4:+58354775 None:intergenic
GACTTTCTTGGCCTTACCAA+CGG 0.550956 1.4:-58354602 MS.gene39939:CDS
CAACAACTGTTCCTGAGTCG+TGG 0.554359 1.4:-58354436 MS.gene39939:CDS
ATCAAAACCTACAGCTACAT+AGG 0.556033 1.4:-58357651 MS.gene39939:CDS
AGATCTCCAAGAGCCCTTGA+AGG 0.557730 1.4:+58357526 None:intergenic
CAAACCTCTCAGCTCAACAT+TGG 0.559254 1.4:-58354722 MS.gene39939:CDS
TGCTGAGAGGTGTGGTGACA+TGG 0.562477 1.4:+58354823 None:intergenic
TAATGGGTTTGTGTTTGTGG+TGG 0.568535 1.4:+58355111 None:intergenic
TAGCATATCCTTTACATCCA+AGG 0.571843 1.4:+58354559 None:intergenic
TTGGCTGCCTGTGATGGCGG+CGG 0.574963 1.4:+58354766 None:intergenic
AGAAGCCTCCCTGGTAACCC+AGG 0.574987 1.4:-58358086 MS.gene39939:intron
GTGTGATGAAGAAATGGTAG+AGG 0.576408 1.4:+58354914 None:intergenic
AAGTCACAGTCCCAACAAGC+AGG 0.578271 1.4:-58354476 MS.gene39939:CDS
AAGGTTGTTGTGTGCTGACG+TGG 0.578429 1.4:+58354858 None:intergenic
AGAGAATATAAATGTGATTG+TGG 0.579986 1.4:-58357382 MS.gene39939:CDS
TACCATGGAAGTTGAAGCAA+AGG 0.582854 1.4:-58357615 MS.gene39939:CDS
TGGTTGGCTGCCTGTGATGG+CGG 0.588921 1.4:+58354763 None:intergenic
TGGTGAGTCCTTGGATGTAA+AGG 0.590221 1.4:-58354567 MS.gene39939:CDS
GTTGTTAATGTAGTGATCAA+CGG 0.595265 1.4:+58354670 None:intergenic
GGGTTATGATGAACACATGA+AGG 0.597360 1.4:+58357547 None:intergenic
GATCTCCAAGAGCCCTTGAA+GGG 0.598968 1.4:+58357527 None:intergenic
TGTTGTGTGCTGACGTGGAA+GGG 0.607996 1.4:+58354863 None:intergenic
TTGTTGTGTGCTGACGTGGA+AGG 0.613233 1.4:+58354862 None:intergenic
CTGGCCAATGTTGAGCTGAG+AGG 0.614671 1.4:+58354718 None:intergenic
GACATGGCAGCACTGGAAGA+AGG 0.615895 1.4:+58354839 None:intergenic
ATTAGTTACCTGGGTTACCA+GGG 0.616252 1.4:+58358078 None:intergenic
GGAGAGGACATAACCTACCA+TGG 0.621627 1.4:-58357630 MS.gene39939:CDS
AGAACGACGACGGTCTCACG+AGG 0.626644 1.4:-58354625 MS.gene39939:CDS
TGTTCATCATAACCCTTCAA+GGG 0.626799 1.4:-58357539 MS.gene39939:CDS
ATTCAGGCTTGATGTTGTGG+TGG 0.630169 1.4:+58354972 None:intergenic
CACTACATTAACAACATGAG+AGG 0.631695 1.4:-58354662 MS.gene39939:CDS
ACCAACGGCGGAGGAAATGG+TGG 0.634537 1.4:-58354587 MS.gene39939:CDS
AAACATTATAGTAGAAAACA+TGG 0.647572 1.4:-58357490 MS.gene39939:CDS
CGTCGTCGTTCTTTCCGGTG+AGG 0.652249 1.4:+58354636 None:intergenic
AGTTACCTGGGTTACCAGGG+AGG 0.652361 1.4:+58358081 None:intergenic
ACAACTGTTCCTGAGTCGTG+GGG 0.654552 1.4:-58354434 MS.gene39939:CDS
CCAACAAAGCCACATCACCT+GGG 0.660119 1.4:-58355041 MS.gene39939:CDS
TGATGAAGAAATGGTAGAGG+AGG 0.664055 1.4:+58354917 None:intergenic
TGGAATTGGACATTAGTGCA+GGG 0.664460 1.4:+58358207 None:intergenic
AACCTACAGCTACATAGGAG+AGG 0.665795 1.4:-58357646 MS.gene39939:CDS
TGTGTGTGAGATCTGCAACA+AGG 0.672147 1.4:-58357686 MS.gene39939:CDS
CAACTGTTCCTGAGTCGTGG+GGG 0.675581 1.4:-58354433 MS.gene39939:CDS
AGTGCAGTTGCTGAGAGGTG+TGG 0.691151 1.4:+58354815 None:intergenic
GGAGAAGTGCAGTTGCTGAG+AGG 0.691157 1.4:+58354810 None:intergenic
AGGATATGCTAACATTCACG+GGG 0.699503 1.4:-58354547 MS.gene39939:CDS
TTTCTTGGCCTTACCAACGG+CGG 0.703626 1.4:-58354599 MS.gene39939:CDS
AAAGCTCACTCTAAAACCTG+TGG 0.713942 1.4:-58357409 MS.gene39939:CDS
GAACGACGACGGTCTCACGA+GGG 0.715036 1.4:-58354624 MS.gene39939:CDS
CTCACCGGAAAGAACGACGA+CGG 0.728864 1.4:-58354635 MS.gene39939:CDS
GGATATGCTAACATTCACGG+GGG 0.755990 1.4:-58354546 MS.gene39939:CDS
GATATGCTAACATTCACGGG+GGG 0.778489 1.4:-58354545 MS.gene39939:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATATTATGTTGA+AGG + chr1.4:58356558-58356577 None:intergenic 10.0%
!! TAAAAATTCATAAATGAATT+GGG - chr1.4:58356904-58356923 MS.gene39939:intron 10.0%
!! TTAAAAATTCATAAATGAAT+TGG - chr1.4:58356903-58356922 MS.gene39939:intron 10.0%
!! AAAAGAATAATTATGAAAAC+AGG + chr1.4:58355727-58355746 None:intergenic 15.0%
!! AATAGAAACATAAGAAAAAA+TGG + chr1.4:58355388-58355407 None:intergenic 15.0%
!! TATTCTAAATGTAATTACTA+GGG + chr1.4:58357086-58357105 None:intergenic 15.0%
!! TGGATTAATTTAATAAAACA+TGG + chr1.4:58355368-58355387 None:intergenic 15.0%
!! TTATTCTAAATGTAATTACT+AGG + chr1.4:58357087-58357106 None:intergenic 15.0%
!!! AACAATAAATAAACCTTTTT+AGG - chr1.4:58357113-58357132 MS.gene39939:intron 15.0%
!!! AATCTAAAACATTTATATTG+CGG + chr1.4:58355478-58355497 None:intergenic 15.0%
!!! ACAATAAATAAACCTTTTTA+GGG - chr1.4:58357114-58357133 MS.gene39939:intron 15.0%
!!! TCATTTATGAATTTTTAACA+TGG + chr1.4:58356901-58356920 None:intergenic 15.0%
!! AAACATTATAGTAGAAAACA+TGG - chr1.4:58355146-58355165 MS.gene39939:CDS 20.0%
!! ATATTATGTTGAAGGATTAT+TGG + chr1.4:58356550-58356569 None:intergenic 20.0%
!! ATCTTCTAATTACATAAGAA+TGG - chr1.4:58355754-58355773 MS.gene39939:intron 20.0%
!! ATTTAATCTCTACCAAATTA+TGG + chr1.4:58355631-58355650 None:intergenic 20.0%
!! CTTCAAAATCCTTTATATTA+TGG - chr1.4:58354661-58354680 MS.gene39939:CDS 20.0%
!! TAACTAAATAAATAACACCA+TGG - chr1.4:58357321-58357340 MS.gene39939:intron 20.0%
!! TAACTAATTATTAGTTACCT+GGG + chr1.4:58354570-58354589 None:intergenic 20.0%
!! TATACTAAACAATTGAACTA+AGG + chr1.4:58354827-58354846 None:intergenic 20.0%
!! TTAACTAATTATTAGTTACC+TGG + chr1.4:58354571-58354590 None:intergenic 20.0%
!!! AATGAATTTGATTTTGAGAA+TGG + chr1.4:58356830-58356849 None:intergenic 20.0%
!!! CAAACCATAATTTTAAATTG+CGG - chr1.4:58355434-58355453 MS.gene39939:intron 20.0%
!!! TAGTCTTATAATTATGATGA+TGG + chr1.4:58356522-58356541 None:intergenic 20.0%
!!! TTACATGTGATTTTAAATTG+CGG + chr1.4:58354710-58354729 None:intergenic 20.0%
! AACATAATTTATGTCCCAAT+TGG - chr1.4:58356652-58356671 MS.gene39939:intron 25.0%
! AAGTTCAGAGAAAAATACTA+TGG + chr1.4:58356341-58356360 None:intergenic 25.0%
! AATATGTTAAATTATGGTCG+CGG - chr1.4:58354607-58354626 MS.gene39939:CDS 25.0%
! AATTATGATTGGATAAATGC+AGG - chr1.4:58357018-58357037 MS.gene39939:intron 25.0%
! AATTTATGGTTGAAACTAAG+TGG + chr1.4:58354498-58354517 None:intergenic 25.0%
! AGAGAATATAAATGTGATTG+TGG - chr1.4:58355254-58355273 MS.gene39939:intron 25.0%
! ATAAAAAAGAGCCTCTAATA+TGG + chr1.4:58357302-58357321 None:intergenic 25.0%
! ATGCAGGATAATTTCAATTT+AGG - chr1.4:58357034-58357053 MS.gene39939:intron 25.0%
! CAGTAGTAGATAAAAACAAA+AGG + chr1.4:58355961-58355980 None:intergenic 25.0%
! CTTTCATGAAACAATTTCAA+GGG + chr1.4:58355795-58355814 None:intergenic 25.0%
! TATACACTCTTATGTTGATA+TGG - chr1.4:58356180-58356199 MS.gene39939:intron 25.0%
! TGCAGGATAATTTCAATTTA+GGG - chr1.4:58357035-58357054 MS.gene39939:intron 25.0%
! TTTAGATTGCATTTGTGTAA+CGG - chr1.4:58355490-58355509 MS.gene39939:intron 25.0%
!! TAGTTGACTCAAATTATGAT+TGG - chr1.4:58357007-58357026 MS.gene39939:intron 25.0%
!! TGTTTTCTGAATCCTAAAAA+AGG - chr1.4:58355886-58355905 MS.gene39939:intron 25.0%
!! TTCCAATTTTAAATGTGTCA+GGG - chr1.4:58356116-58356135 MS.gene39939:intron 25.0%
!! TTTAGGTTAATTTGGTTTAG+AGG - chr1.4:58357181-58357200 MS.gene39939:intron 25.0%
!! TTTCCAATTTTAAATGTGTC+AGG - chr1.4:58356115-58356134 MS.gene39939:intron 25.0%
!! TTTGTTGCTAATAGTGTTTT+TGG + chr1.4:58354924-58354943 None:intergenic 25.0%
!!! CTAGACTTTTTAGGTTAATT+TGG - chr1.4:58357173-58357192 MS.gene39939:intron 25.0%
!!! TACTAGTACATTTTAGAGAA+GGG - chr1.4:58357143-58357162 MS.gene39939:intron 25.0%
!!! TCTTATAATTATGATGATGG+TGG + chr1.4:58356519-58356538 None:intergenic 25.0%
AAAGGATATGCTAACATTCA+CGG - chr1.4:58358087-58358106 MS.gene39939:CDS 30.0%
AACAATAAGGCAAATGCAAT+CGG + chr1.4:58355525-58355544 None:intergenic 30.0%
AATTATGGTAAATACTCCGT+AGG + chr1.4:58355616-58355635 None:intergenic 30.0%
AGTACTATACCTGGAAAAAA+GGG + chr1.4:58355282-58355301 None:intergenic 30.0%
ATAACTTCATTACAGTGGAT+TGG - chr1.4:58356424-58356443 MS.gene39939:intron 30.0%
ATGATGTCATTATGCTCTTA+GGG + chr1.4:58357751-58357770 None:intergenic 30.0%
CCTTGAAATTGTTTCATGAA+AGG - chr1.4:58355793-58355812 MS.gene39939:intron 30.0%
CCTTTCATGAAACAATTTCA+AGG + chr1.4:58355796-58355815 None:intergenic 30.0%
CTTCTATAACTTCATTACAG+TGG - chr1.4:58356419-58356438 MS.gene39939:intron 30.0%
GAAAACATGGTGAGAAAAAA+TGG - chr1.4:58355159-58355178 MS.gene39939:CDS 30.0%
GAGTATTATTAAGGTTGCTA+GGG + chr1.4:58357643-58357662 None:intergenic 30.0%
GGGACATAAATTATGTTACA+GGG + chr1.4:58356649-58356668 None:intergenic 30.0%
GTTGTTAATGTAGTGATCAA+CGG + chr1.4:58357969-58357988 None:intergenic 30.0%
TAAAAACACAAGTGACATGT+TGG - chr1.4:58357249-58357268 MS.gene39939:intron 30.0%
TAGTACTATACCTGGAAAAA+AGG + chr1.4:58355283-58355302 None:intergenic 30.0%
TGGGACATAAATTATGTTAC+AGG + chr1.4:58356650-58356669 None:intergenic 30.0%
TTGAATCAAGACCATATTAG+AGG - chr1.4:58357288-58357307 MS.gene39939:intron 30.0%
TTGCAGCACAATAAACAATA+AGG + chr1.4:58355538-58355557 None:intergenic 30.0%
TTTATATTCTCTAGTACCAC+AGG + chr1.4:58355246-58355265 None:intergenic 30.0%
! ACGGAGTATTTACCATAATT+TGG - chr1.4:58355616-58355635 MS.gene39939:intron 30.0%
! AGAGTATTATTAAGGTTGCT+AGG + chr1.4:58357644-58357663 None:intergenic 30.0%
! AGATAAAAACAAAAGGTGTG+TGG + chr1.4:58355954-58355973 None:intergenic 30.0%
! CAGACCGCAATTTAAAATTA+TGG + chr1.4:58355441-58355460 None:intergenic 30.0%
! CTAATATGGTCTTGATTCAA+TGG + chr1.4:58357288-58357307 None:intergenic 30.0%
! TTTTATTGTGTGAAAACTGC+AGG - chr1.4:58357417-58357436 MS.gene39939:CDS 30.0%
!! ATTGCTGTGTTTTGAACAAT+CGG - chr1.4:58356930-58356949 MS.gene39939:intron 30.0%
!! CTACTAGTACATTTTAGAGA+AGG - chr1.4:58357142-58357161 MS.gene39939:intron 30.0%
!! GGAAACTTTGTTGTTGATTT+GGG + chr1.4:58357571-58357590 None:intergenic 30.0%
!! GTCACTTGTGTTTTTATTGA+GGG + chr1.4:58357245-58357264 None:intergenic 30.0%
!! GTTTGATGATGATGACTTAT+TGG + chr1.4:58357899-58357918 None:intergenic 30.0%
!! TCACTTGTGTTTTTATTGAG+GGG + chr1.4:58357244-58357263 None:intergenic 30.0%
!! TGGAAACTTTGTTGTTGATT+TGG + chr1.4:58357572-58357591 None:intergenic 30.0%
!! TGTCACTTGTGTTTTTATTG+AGG + chr1.4:58357246-58357265 None:intergenic 30.0%
!!! ATAGTTTTAGGTTACGATTG+CGG + chr1.4:58355593-58355612 None:intergenic 30.0%
!!! CTTTTTTTCTTGGTCTTTTG+AGG + chr1.4:58354532-58354551 None:intergenic 30.0%
!!! TCATTCATTTGGCCTTTTTT+AGG + chr1.4:58355901-58355920 None:intergenic 30.0%
AAAAAGGCCAAATGAATGAG+CGG - chr1.4:58355902-58355921 MS.gene39939:intron 35.0%
AAAACCAAAACCTGCTTGTT+GGG + chr1.4:58358173-58358192 None:intergenic 35.0%
AAATCATGCATGGGATAAAG+GGG + chr1.4:58356721-58356740 None:intergenic 35.0%
AAGGATATGCTAACATTCAC+GGG - chr1.4:58358088-58358107 MS.gene39939:CDS 35.0%
ACTCTTATGTTGATATGGAG+TGG - chr1.4:58356185-58356204 MS.gene39939:intron 35.0%
AGAACTTCACAAGTCTTCTT+TGG - chr1.4:58356775-58356794 MS.gene39939:intron 35.0%
AGCAGTAATAGTACTATACC+TGG + chr1.4:58355291-58355310 None:intergenic 35.0%
ATCAAAACCTACAGCTACAT+AGG - chr1.4:58354985-58355004 MS.gene39939:CDS 35.0%
ATTCTAGTCTCTTTAGCAAC+TGG + chr1.4:58355856-58355875 None:intergenic 35.0%
CACTACATTAACAACATGAG+AGG - chr1.4:58357974-58357993 MS.gene39939:intron 35.0%
CGTAACCTAAAACTATCCTA+CGG - chr1.4:58355597-58355616 MS.gene39939:intron 35.0%
CTCTTATGTTGATATGGAGT+GGG - chr1.4:58356186-58356205 MS.gene39939:intron 35.0%
GAAATCATGCATGGGATAAA+GGG + chr1.4:58356722-58356741 None:intergenic 35.0%
GATGATGTCATTATGCTCTT+AGG + chr1.4:58357752-58357771 None:intergenic 35.0%
GTGTGAAAATTTGGAGATTC+AGG + chr1.4:58357683-58357702 None:intergenic 35.0%
GTTTGCATGCATAAAGCAAA+AGG - chr1.4:58356585-58356604 MS.gene39939:intron 35.0%
TAGCATATCCTTTACATCCA+AGG + chr1.4:58358080-58358099 None:intergenic 35.0%
TAGTTGCGGCCATAATATAA+AGG + chr1.4:58354673-58354692 None:intergenic 35.0%
TATGCATGATGCAATTGATG+TGG + chr1.4:58356615-58356634 None:intergenic 35.0%
TATTAAGGTTGCTAGGGTTA+GGG + chr1.4:58357637-58357656 None:intergenic 35.0%
TCTATGCTGTTCATTCTGAT+TGG - chr1.4:58355204-58355223 MS.gene39939:intron 35.0%
TCTGCAACTGTAATTAGTTG+CGG + chr1.4:58354687-58354706 None:intergenic 35.0%
TGAAAGGTTGCATGAAATTG+TGG - chr1.4:58355809-58355828 MS.gene39939:intron 35.0%
TGTTCATCATAACCCTTCAA+GGG - chr1.4:58355097-58355116 MS.gene39939:CDS 35.0%
TTATTAAGGTTGCTAGGGTT+AGG + chr1.4:58357638-58357657 None:intergenic 35.0%
TTGCATCGTACTTATAACCA+TGG + chr1.4:58357341-58357360 None:intergenic 35.0%
TTTGCAGCATAACAACAACT+AGG - chr1.4:58355566-58355585 MS.gene39939:intron 35.0%
! ATACTCCGTAGGATAGTTTT+AGG + chr1.4:58355605-58355624 None:intergenic 35.0%
! CACCCTGACACATTTAAAAT+TGG + chr1.4:58356121-58356140 None:intergenic 35.0%
! GGTTGAAAGCTAGACTTTTT+AGG - chr1.4:58357164-58357183 MS.gene39939:intron 35.0%
! TGATGATGATGACTTATTGG+TGG + chr1.4:58357896-58357915 None:intergenic 35.0%
! TGCAGTCTCTAAGAAAATGA+TGG - chr1.4:58356209-58356228 MS.gene39939:intron 35.0%
! TGTTTCTTCTGAGAAAGAAG+TGG + chr1.4:58354452-58354471 None:intergenic 35.0%
! TTCTGAGAAAGAAGTGGAAT+TGG + chr1.4:58354446-58354465 None:intergenic 35.0%
! TTTTGAACAATCGGTCACAT+TGG - chr1.4:58356939-58356958 MS.gene39939:intron 35.0%
!! TGTGGTGGAGAGTATTATTA+AGG + chr1.4:58357652-58357671 None:intergenic 35.0%
!! TTACAGTGGATTGGATTACA+TGG - chr1.4:58356433-58356452 MS.gene39939:intron 35.0%
!! TTTGTTGTTGATTTGGGAAG+AGG + chr1.4:58357565-58357584 None:intergenic 35.0%
!!! AAGCAGGTTTTGGTTTTCTT+GGG - chr1.4:58358176-58358195 MS.gene39939:CDS 35.0%
!!! AGCATCATCATGTTTTGATG+AGG + chr1.4:58358139-58358158 None:intergenic 35.0%
!!! TCATCATGTTTTGATGAGGT+TGG + chr1.4:58358135-58358154 None:intergenic 35.0%
AAAGCTATCACTTCAGCATC+AGG + chr1.4:58354897-58354916 None:intergenic 40.0%
AAGAAAAAAAGAAGCCTCCC+TGG - chr1.4:58354541-58354560 MS.gene39939:CDS 40.0%
AAGGTAAGGGAAATCATGCA+TGG + chr1.4:58356731-58356750 None:intergenic 40.0%
AATCATGCATGGGATAAAGG+GGG + chr1.4:58356720-58356739 None:intergenic 40.0%
AGGAAGAGAGATTGGACTAA+TGG + chr1.4:58357545-58357564 None:intergenic 40.0%
AGGATATGCTAACATTCACG+GGG - chr1.4:58358089-58358108 MS.gene39939:CDS 40.0%
AGGTAAGGGAAATCATGCAT+GGG + chr1.4:58356730-58356749 None:intergenic 40.0%
ATTAGTTACCTGGGTTACCA+GGG + chr1.4:58354561-58354580 None:intergenic 40.0%
ATTGTGTGAAAACTGCAGGA+AGG - chr1.4:58357421-58357440 MS.gene39939:CDS 40.0%
GAAAACCAAAACCTGCTTGT+TGG + chr1.4:58358174-58358193 None:intergenic 40.0%
GGAAATCATGCATGGGATAA+AGG + chr1.4:58356723-58356742 None:intergenic 40.0%
GGAAGAGAGATTGGACTAAT+GGG + chr1.4:58357544-58357563 None:intergenic 40.0%
GGGTTATGATGAACACATGA+AGG + chr1.4:58355092-58355111 None:intergenic 40.0%
GGGTTTGTGTGATGAAGAAA+TGG + chr1.4:58357731-58357750 None:intergenic 40.0%
GTGTGATGAAGAAATGGTAG+AGG + chr1.4:58357725-58357744 None:intergenic 40.0%
GTGTTCATCATAACCCTTCA+AGG - chr1.4:58355096-58355115 MS.gene39939:CDS 40.0%
TACCATGGAAGTTGAAGCAA+AGG - chr1.4:58355021-58355040 MS.gene39939:CDS 40.0%
TATTAGTTACCTGGGTTACC+AGG + chr1.4:58354562-58354581 None:intergenic 40.0%
TGATGAAGAAATGGTAGAGG+AGG + chr1.4:58357722-58357741 None:intergenic 40.0%
TGGAATTGGACATTAGTGCA+GGG + chr1.4:58354432-58354451 None:intergenic 40.0%
TTAAATTATGGTCGCGGTTG+CGG - chr1.4:58354613-58354632 MS.gene39939:CDS 40.0%
TTAACTGCCGCTCATTCATT+TGG + chr1.4:58355912-58355931 None:intergenic 40.0%
TTCCTTTGCTTCAACTTCCA+TGG + chr1.4:58355026-58355045 None:intergenic 40.0%
TTTGCTTCAACTTCCATGGT+AGG + chr1.4:58355022-58355041 None:intergenic 40.0%
! ACACGGATTAACGTGTCAAT+GGG + chr1.4:58356684-58356703 None:intergenic 40.0%
! CTAGGGATGAACGAGTTTTA+AGG + chr1.4:58357069-58357088 None:intergenic 40.0%
! GATGATGACTTATTGGTGGT+TGG + chr1.4:58357892-58357911 None:intergenic 40.0%
! GATTAACGTGTCAATGGGTT+TGG + chr1.4:58356679-58356698 None:intergenic 40.0%
! TACACGGATTAACGTGTCAA+TGG + chr1.4:58356685-58356704 None:intergenic 40.0%
! TCAATGGGTTTGGACCAATT+GGG + chr1.4:58356669-58356688 None:intergenic 40.0%
! TCCCTTACCTTTTTGCCAAT+GGG - chr1.4:58356740-58356759 MS.gene39939:intron 40.0%
! TTCCCTTACCTTTTTGCCAA+TGG - chr1.4:58356739-58356758 MS.gene39939:intron 40.0%
!! AAAGCTCACTCTAAAACCTG+TGG - chr1.4:58355227-58355246 MS.gene39939:intron 40.0%
!! ATGATGATGGTGGAAGTCTT+GGG + chr1.4:58356509-58356528 None:intergenic 40.0%
!! CTAGTAGAAGCACCCTAAAA+AGG + chr1.4:58357129-58357148 None:intergenic 40.0%
!! GACTAATGGGTTTGTGTTTG+TGG + chr1.4:58357531-58357550 None:intergenic 40.0%
!! GAGAGGTTGGTGTGAAAATT+TGG + chr1.4:58357692-58357711 None:intergenic 40.0%
!! TAATGGGTTTGTGTTTGTGG+TGG + chr1.4:58357528-58357547 None:intergenic 40.0%
!! TATGATGATGGTGGAAGTCT+TGG + chr1.4:58356510-58356529 None:intergenic 40.0%
!! TTTGATGAGGTTGGTGTTGA+TGG + chr1.4:58358126-58358145 None:intergenic 40.0%
!!! AGGGAGGCTTCTTTTTTTCT+TGG + chr1.4:58354542-58354561 None:intergenic 40.0%
!!! ATTGTGGTACCCTTTTTTCC+AGG - chr1.4:58355270-58355289 MS.gene39939:intron 40.0%
!!! CAAGCAGGTTTTGGTTTTCT+TGG - chr1.4:58358175-58358194 MS.gene39939:CDS 40.0%
!!! GATTTTGAAGTCTCTGCAAC+AGG + chr1.4:58354651-58354670 None:intergenic 40.0%
!!! TGATGTGGCTTTGTTGGTTT+TGG + chr1.4:58357592-58357611 None:intergenic 40.0%
AACAACTGTTCCTGAGTCGT+GGG - chr1.4:58358201-58358220 MS.gene39939:CDS 45.0%
AACCTACAGCTACATAGGAG+AGG - chr1.4:58354990-58355009 MS.gene39939:CDS 45.0%
AATGTGCCCCATTGGCAAAA+AGG + chr1.4:58356750-58356769 None:intergenic 45.0%
AGGCTGCTGTGAGGAATTTA+TGG + chr1.4:58354512-58354531 None:intergenic 45.0%
ATTCAGGCTTGATGTTGTGG+TGG + chr1.4:58357667-58357686 None:intergenic 45.0%
CAAACCTCTCAGCTCAACAT+TGG - chr1.4:58357914-58357933 MS.gene39939:intron 45.0%
CCCCATTGGCAAAAAGGTAA+GGG + chr1.4:58356744-58356763 None:intergenic 45.0%
GAGATTCAGGCTTGATGTTG+TGG + chr1.4:58357670-58357689 None:intergenic 45.0%
GATATGCTAACATTCACGGG+GGG - chr1.4:58358091-58358110 MS.gene39939:CDS 45.0%
GGATATGCTAACATTCACGG+GGG - chr1.4:58358090-58358109 MS.gene39939:CDS 45.0%
GTGGAATTGGACATTAGTGC+AGG + chr1.4:58354433-58354452 None:intergenic 45.0%
GTGTGTGAGATCTGCAACAA+GGG - chr1.4:58354951-58354970 MS.gene39939:CDS 45.0%
TCTTGTAGAATGTGCCCCAT+TGG + chr1.4:58356758-58356777 None:intergenic 45.0%
TGATGAACACATGAAGGCTC+TGG + chr1.4:58355086-58355105 None:intergenic 45.0%
TGGTGAGTCCTTGGATGTAA+AGG - chr1.4:58358069-58358088 MS.gene39939:intron 45.0%
TGTGTGTGAGATCTGCAACA+AGG - chr1.4:58354950-58354969 MS.gene39939:CDS 45.0%
TTGAAGTCTCTGCAACAGGA+TGG + chr1.4:58354647-58354666 None:intergenic 45.0%
TTGGGAAGAGGAAGAGAGAT+TGG + chr1.4:58357553-58357572 None:intergenic 45.0%
! CCCTTACCTTTTTGCCAATG+GGG - chr1.4:58356741-58356760 MS.gene39939:intron 45.0%
! GTCAATGGGTTTGGACCAAT+TGG + chr1.4:58356670-58356689 None:intergenic 45.0%
! GTTTGTGTTTGTGGTGGTGA+TGG + chr1.4:58357522-58357541 None:intergenic 45.0%
!! GACTTTCTTGGCCTTACCAA+CGG - chr1.4:58358034-58358053 MS.gene39939:intron 45.0%
!! TTGTGGTGGTGATGGCTAAT+TGG + chr1.4:58357514-58357533 None:intergenic 45.0%
!! ATTTATAATATGTTAAATTA+TGG - chr1.4:58354601-58354620 MS.gene39939:CDS 5.0%
AAGTCACAGTCCCAACAAGC+AGG - chr1.4:58358160-58358179 MS.gene39939:CDS 50.0%
ACAACTGTTCCTGAGTCGTG+GGG - chr1.4:58358202-58358221 MS.gene39939:CDS 50.0%
ACCAACAAAGCCACATCACC+TGG - chr1.4:58357594-58357613 MS.gene39939:CDS 50.0%
AGATCTCCAAGAGCCCTTGA+AGG + chr1.4:58355113-58355132 None:intergenic 50.0%
AGGGCTCTTGGAGATCTTAC+AGG - chr1.4:58355116-58355135 MS.gene39939:CDS 50.0%
AGGTTGCTAGGGTTAGGGTT+TGG + chr1.4:58357632-58357651 None:intergenic 50.0%
ATGCATGGGATAAAGGGGGA+GGG + chr1.4:58356716-58356735 None:intergenic 50.0%
CAACAACTGTTCCTGAGTCG+TGG - chr1.4:58358200-58358219 MS.gene39939:CDS 50.0%
CAGCTCAACATTGGCCAGTT+TGG - chr1.4:58357923-58357942 MS.gene39939:intron 50.0%
CATAACCCTTCAAGGGCTCT+TGG - chr1.4:58355104-58355123 MS.gene39939:CDS 50.0%
CCAACAAAGCCACATCACCT+GGG - chr1.4:58357595-58357614 MS.gene39939:CDS 50.0%
CTCCAAAAAGCAGCAACCGT+CGG - chr1.4:58357845-58357864 MS.gene39939:intron 50.0%
GATCTCCAAGAGCCCTTGAA+GGG + chr1.4:58355112-58355131 None:intergenic 50.0%
GCCCCATTGGCAAAAAGGTA+AGG + chr1.4:58356745-58356764 None:intergenic 50.0%
GCTGAGTCACTGATCCAAAC+TGG + chr1.4:58357940-58357959 None:intergenic 50.0%
GGAGAGGACATAACCTACCA+TGG - chr1.4:58355006-58355025 MS.gene39939:CDS 50.0%
GTCCTCTCCTATGTAGCTGT+AGG + chr1.4:58354995-58355014 None:intergenic 50.0%
! AAGGTTGTTGTGTGCTGACG+TGG + chr1.4:58357781-58357800 None:intergenic 50.0%
! AGGAAATGGTGGTGAGTCCT+TGG - chr1.4:58358060-58358079 MS.gene39939:intron 50.0%
! CAGTCCCAACAAGCAGGTTT+TGG - chr1.4:58358166-58358185 MS.gene39939:CDS 50.0%
! CTAGGGTTAGGGTTTGGTTG+AGG + chr1.4:58357626-58357645 None:intergenic 50.0%
! GGTTAGGGTTTGGTTGAGGT+GGG + chr1.4:58357622-58357641 None:intergenic 50.0%
! TGTTGTGTGCTGACGTGGAA+GGG + chr1.4:58357776-58357795 None:intergenic 50.0%
! TTGTTGTGTGCTGACGTGGA+AGG + chr1.4:58357777-58357796 None:intergenic 50.0%
!! TTTCTTGGCCTTACCAACGG+CGG - chr1.4:58358037-58358056 MS.gene39939:intron 50.0%
AACATGAGAGGCTGCCTCAC+CGG - chr1.4:58357986-58358005 MS.gene39939:intron 55.0%
AGGAGGCTGAGAAGAGAGGT+TGG + chr1.4:58357705-58357724 None:intergenic 55.0%
AGTGCAGTTGCTGAGAGGTG+TGG + chr1.4:58357824-58357843 None:intergenic 55.0%
AGTTACCTGGGTTACCAGGG+AGG + chr1.4:58354558-58354577 None:intergenic 55.0%
CAACTGTTCCTGAGTCGTGG+GGG - chr1.4:58358203-58358222 MS.gene39939:CDS 55.0%
CATGCATGGGATAAAGGGGG+AGG + chr1.4:58356717-58356736 None:intergenic 55.0%
CATTTCCTCCGCCGTTGGTA+AGG + chr1.4:58358048-58358067 None:intergenic 55.0%
CTCACCGGAAAGAACGACGA+CGG - chr1.4:58358001-58358020 MS.gene39939:intron 55.0%
CTGGCCAATGTTGAGCTGAG+AGG + chr1.4:58357921-58357940 None:intergenic 55.0%
CTTACCAACGGCGGAGGAAA+TGG - chr1.4:58358046-58358065 MS.gene39939:intron 55.0%
GAGACCGTCGTCGTTCTTTC+CGG + chr1.4:58358008-58358027 None:intergenic 55.0%
GGGGAGGGGACTAATGTACA+CGG + chr1.4:58356701-58356720 None:intergenic 55.0%
GGTCTCACGAGGGACTTTCT+TGG - chr1.4:58358022-58358041 MS.gene39939:intron 55.0%
GTAGAGGAGGCTGAGAAGAG+AGG + chr1.4:58357709-58357728 None:intergenic 55.0%
TAACAGTTCCCCCACGACTC+AGG + chr1.4:58358214-58358233 None:intergenic 55.0%
TGCATGGGATAAAGGGGGAG+GGG + chr1.4:58356715-58356734 None:intergenic 55.0%
! GACATGGCAGCACTGGAAGA+AGG + chr1.4:58357800-58357819 None:intergenic 55.0%
! GGAGAAGTGCAGTTGCTGAG+AGG + chr1.4:58357829-58357848 None:intergenic 55.0%
! GGGTTAGGGTTTGGTTGAGG+TGG + chr1.4:58357623-58357642 None:intergenic 55.0%
! TGCTGAGAGGTGTGGTGACA+TGG + chr1.4:58357816-58357835 None:intergenic 55.0%
!! CCCAGGTGATGTGGCTTTGT+TGG + chr1.4:58357598-58357617 None:intergenic 55.0%
!!! CACCGACGGTTGCTGCTTTT+TGG + chr1.4:58357850-58357869 None:intergenic 55.0%
!!! GGTCTTTTGAGGCTGCTGTG+AGG + chr1.4:58354521-58354540 None:intergenic 55.0%
ACCAACGGCGGAGGAAATGG+TGG - chr1.4:58358049-58358068 MS.gene39939:intron 60.0%
ACCACCATTTCCTCCGCCGT+TGG + chr1.4:58358053-58358072 None:intergenic 60.0%
AGAACGACGACGGTCTCACG+AGG - chr1.4:58358011-58358030 MS.gene39939:intron 60.0%
AGAAGCCTCCCTGGTAACCC+AGG - chr1.4:58354550-58354569 MS.gene39939:CDS 60.0%
CGTCGTCGTTCTTTCCGGTG+AGG + chr1.4:58358003-58358022 None:intergenic 60.0%
GAACGACGACGGTCTCACGA+GGG - chr1.4:58358012-58358031 MS.gene39939:intron 60.0%
GTGTGGTGACATGGCAGCAC+TGG + chr1.4:58357807-58357826 None:intergenic 60.0%
GTTTGGTTGAGGTGGGTCCC+AGG + chr1.4:58357615-58357634 None:intergenic 60.0%
! TGGTGGTTGGCTGCCTGTGA+TGG + chr1.4:58357879-58357898 None:intergenic 60.0%
! TGGTTGGCTGCCTGTGATGG+CGG + chr1.4:58357876-58357895 None:intergenic 60.0%
GAGGTGGGTCCCAGGTGATG+TGG + chr1.4:58357607-58357626 None:intergenic 65.0%
!! CTTGGCCTTACCAACGGCGG+AGG - chr1.4:58358040-58358059 MS.gene39939:intron 65.0%
!! TTGGCTGCCTGTGATGGCGG+CGG + chr1.4:58357873-58357892 None:intergenic 65.0%
!! TGTGATGGCGGCGGCACCGA+CGG + chr1.4:58357864-58357883 None:intergenic 70.0%
!! GTCGGTGCCGCCGCCATCAC+AGG - chr1.4:58357863-58357882 MS.gene39939:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 58354424 58358234 58354424 ID=MS.gene39939
chr1.4 mRNA 58354424 58358234 58354424 ID=MS.gene39939.t1;Parent=MS.gene39939
chr1.4 exon 58358087 58358234 58358087 ID=MS.gene39939.t1.exon1;Parent=MS.gene39939.t1
chr1.4 CDS 58358087 58358234 58358087 ID=cds.MS.gene39939.t1;Parent=MS.gene39939.t1
chr1.4 exon 58357367 58357766 58357367 ID=MS.gene39939.t1.exon2;Parent=MS.gene39939.t1
chr1.4 CDS 58357367 58357766 58357367 ID=cds.MS.gene39939.t1;Parent=MS.gene39939.t1
chr1.4 exon 58354424 58355219 58354424 ID=MS.gene39939.t1.exon3;Parent=MS.gene39939.t1
chr1.4 CDS 58354424 58355219 58354424 ID=cds.MS.gene39939.t1;Parent=MS.gene39939.t1
Gene Sequence

>MS.gene39939

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAGCAGCCTCAAAAGACCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGGTAACTAATAATTAGTTAAATAGATTTATATTTATAATATGTTAAATTATGGTCGCGGTTGCGGTTACGCTACCATCCTGTTGCAGAGACTTCAAAATCCTTTATATTATGGCCGCAACTAATTACAGTTGCAGACCGCAATTTAAAATCACATGTAACAACATATATTAGTATAATATTAATAGTATATAGTATATAGTTTTTTTTTTTTTTGAAGAAATCAAAATTAGTATATAGTATATAGTATATACACCTTAGTTCAATTGTTTAGTATATGATTGACATGTTAATTAATTTTGTAATTGATTCTCTTAATTCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAAACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAATAAAGATGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGTATAGTACTATTACTGCTCATAGATATAAATTTCAAGTACACACATAATATTTTCATGTTAATTTCATATATCCATGTTTTATTAAATTAATCCATTTTTTCTTATGTTTCTATTTTAGATCAATAATAATGTTATAAGTGCAAACCATAATTTTAAATTGCGGTCTGCAGCTACAATTCAGCCGCAATATAAATGTTTTAGATTGCATTTGTGTAACGGTTTGCAATTCCGATTGCATTTGCCTTATTGTTTATTGTGCTGCAATATCAAAGTTTGCAGCATAACAACAACTAGGACCGCAATCGTAACCTAAAACTATCCTACGGAGTATTTACCATAATTTGGTAGAGATTAAATTAATTACTTTTTGTATCAACAAGATTTTAAATTTAGTTTCTTAAACAATGTTTTTAGAACAGTTGTTAGCATGCCTGTTTTCATAATTATTCTTTTTATTAGTATCTTCTAATTACATAAGAATGGTATGCTAGATTTTTACCCTTGAAATTGTTTCATGAAAGGTTGCATGAAATTGTGGATACAGCTAATAAATAAGTGTCCAGTTGCTAAAGAGACTAGAATTAACTTTAGCTGTTTTCTGAATCCTAAAAAAGGCCAAATGAATGAGCGGCAGTTAACAACAAAAGAAAACACAATCCACACACCTTTTGTTTTTATCTACTACTGTATTATCTGTGACTCAATAGCAATTTTGTTTGTTTTTTTTTAACATCATGATGCATGCACATGCATGTCAGCATGAACAGCATGATGTATACTATTTTTACAACATTAGTATGTGTAAAAAAATAAAATAAAAATTTCCAATTTTAAATGTGTCAGGGTGCTCAATTGTTTTCTAGACTTGATTGTACTCTCTCTACACTATACACTCTTATGTTGATATGGAGTGGGTGCAGTCTCTAAGAAAATGATGGACATCTATTTCTGTCTACTGAAAAAGTAAAAAGAATATAATCAATATAGTTAGAAAATTTGTGATGATTTCTTACTTTTTTCTCAATTTCATTTTTATTGAAAACTCCATAGTATTTTTCTCTGAACTTTTTTCATCATTGTGAAATCTGATAAATCTGCAACAAATCTGATATGCTAAGTTGCTTTCTTCTATAACTTCATTACAGTGGATTGGATTACATGGATTCATTGATCTCAATTGCTTATCTTTGTGTCGTGCATGAGTTCTAGTTTCCCAAGACTTCCACCATCATCATAATTATAAGACTATAGTACCAATAATCCTTCAACATAATATTATATAATTTTAATTGTTTGCATGCATAAAGCAAAAGGCTATCCACATCAATTGCATCATGCATATGATCATTTGACCCTGTAACATAATTTATGTCCCAATTGGTCCAAACCCATTGACACGTTAATCCGTGTACATTAGTCCCCTCCCCCTTTATCCCATGCATGATTTCCCTTACCTTTTTGCCAATGGGGCACATTCTACAAGAACTTCACAAGTCTTCTTTGGTTATGTACATATGCATGCATGATTCATTTCCATTCTCAAAATCAAATTCATTGACTCATTTTCTCTCAAAAAAAGTTACAAAAAAAATATATAAAATTTACCATGTTAAAAATTCATAAATGAATTGGGTGTATTGCTGTGTTTTGAACAATCGGTCACATTGGACTCATTTTCGTATGCAAGTTATAATACAGACGTTCGATTAAGATTAGTTGACTCAAATTATGATTGGATAAATGCAGGATAATTTCAATTTAGGGAATCATATCCTTAAAACTCGTTCATCCCTAGTAATTACATTTAGAATAAAACACTAACAATAAATAAACCTTTTTAGGGTGCTTCTACTAGTACATTTTAGAGAAGGGTTGAAAGCTAGACTTTTTAGGTTAATTTGGTTTAGAGGTTAATTCAAATTTTTATTACTATTTAACAAATAACATCCCCTCAATAAAAACACAAGTGACATGTTGGTTCATGAATTTCACCATTGAATCAAGACCATATTAGAGGCTCTTTTTTATAACTAAATAAATAACACCATGGTTATAAGTACGATGCAAGAAAATATATAGTATTTTCTTATACTCTTTTGTGAATTAATACAAAATTTCTTTTGTTTTATTGTGTGAAAACTGCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCAGCCTCCTCTACCATTTCTTCATCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAACAACCTTCTTCCAGTGCTGCCATGTCACCACACCTCTCAGCAACTGCACTTCTCCAAAAAGCAGCAACCGTCGGTGCCGCCGCCATCACAGGCAGCCAACCACCAATAAGTCATCATCATCAAACCTCTCAGCTCAACATTGGCCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGACGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACGGGGGGTGTAGAATACCATCAACACCAACCTCATCAAAACATGATGATGCTAAAGTCACAGTCCCAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAG
Protein sequence

>MS.gene39939.t1

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKTKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSQPPLPFLHHTNPKSIMTSSPFHVSTQQPSSSAAMSPHLSATALLQKAATVGAAAITGSQPPISHHHQTSQLNIGQFGSVTQLNSVDHYINNMRGCLTGKNDDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC