Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057887.t1 | TKY56988.1 | 31 | 468 | 247 | 17 | 1 | 463 | 1 | 397 | 2.00E-34 | 157.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057887.t1 | Q3EBM5 | 26.5 | 396 | 209 | 18 | 93 | 465 | 95 | 431 | 6.0e-11 | 70.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057887.t1 | A0A392MSZ3 | 63.2 | 117 | 37 | 4 | 1 | 114 | 1 | 114 | 3.3e-26 | 129.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057887 | MS.gene070514 | 0.837412 | 5.28E-57 | -1.69E-46 |
| MS.gene057887 | MS.gene07505 | 0.817926 | 2.56E-52 | -1.69E-46 |
| MS.gene057887 | MS.gene30310 | 0.84235 | 2.73E-58 | -1.69E-46 |
| MS.gene057887 | MS.gene39939 | 0.801341 | 9.42E-49 | -1.69E-46 |
| MS.gene057887 | MS.gene48336 | 0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene057887 | MS.gene51389 | 0.809533 | 1.80E-50 | -1.69E-46 |
| MS.gene057887 | MS.gene61653 | 0.814505 | 1.49E-51 | -1.69E-46 |
| MS.gene057887 | MS.gene65961 | 0.801156 | 1.03E-48 | -1.69E-46 |
| MS.gene057887 | MS.gene66653 | 0.802074 | 6.67E-49 | -1.69E-46 |
| MS.gene057887 | MS.gene71451 | 0.808237 | 3.42E-50 | -1.69E-46 |
| MS.gene057887 | MS.gene72676 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene057887 | MS.gene81623 | 0.805282 | 1.44E-49 | -1.69E-46 |
| MS.gene057887 | MS.gene93781 | 0.855035 | 8.26E-62 | -1.69E-46 |
| MS.gene057887 | MS.gene96111 | 0.804451 | 2.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057887.t1 | MTR_3g097150 | 27.027 | 444 | 222 | 25 | 10 | 406 | 10 | 398 | 5.89e-17 | 83.6 |
| MS.gene057887.t1 | MTR_0036s0110 | 26.812 | 414 | 225 | 20 | 64 | 465 | 81 | 428 | 1.38e-15 | 79.3 |
| MS.gene057887.t1 | MTR_2g059460 | 23.704 | 405 | 244 | 13 | 66 | 465 | 48 | 392 | 7.46e-15 | 76.6 |
| MS.gene057887.t1 | MTR_8g038280 | 27.507 | 349 | 192 | 17 | 68 | 400 | 77 | 380 | 1.06e-14 | 76.6 |
| MS.gene057887.t1 | MTR_6g088760 | 25.145 | 346 | 215 | 15 | 69 | 406 | 80 | 389 | 1.33e-14 | 76.6 |
| MS.gene057887.t1 | MTR_0036s0070 | 24.570 | 407 | 223 | 16 | 68 | 465 | 81 | 412 | 6.72e-14 | 73.9 |
| MS.gene057887.t1 | MTR_2g105300 | 24.281 | 313 | 201 | 12 | 100 | 406 | 53 | 335 | 1.07e-13 | 73.2 |
| MS.gene057887.t1 | MTR_2g067830 | 23.824 | 319 | 209 | 12 | 93 | 406 | 68 | 357 | 2.58e-13 | 72.0 |
| MS.gene057887.t1 | MTR_2g059490 | 24.586 | 362 | 205 | 14 | 65 | 406 | 46 | 359 | 2.75e-13 | 72.0 |
| MS.gene057887.t1 | MTR_1g060750 | 29.752 | 242 | 130 | 12 | 227 | 465 | 158 | 362 | 1.11e-12 | 69.7 |
| MS.gene057887.t1 | MTR_5g044770 | 24.466 | 421 | 236 | 19 | 66 | 475 | 75 | 424 | 2.19e-12 | 69.3 |
| MS.gene057887.t1 | MTR_0036s0050 | 25.061 | 411 | 225 | 20 | 68 | 465 | 81 | 421 | 2.61e-11 | 65.9 |
| MS.gene057887.t1 | MTR_0024s0040 | 24.819 | 415 | 242 | 17 | 71 | 477 | 54 | 406 | 6.68e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057887.t1 | AT2G03200 | 26.149 | 348 | 194 | 16 | 78 | 406 | 107 | 410 | 6.11e-13 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAATCTTTATCTTTATC+TGG | 0.185237 | 5.3:-69221259 | None:intergenic |
| GTGACTTTCAATCTTATAAA+AGG | 0.208727 | 5.3:+69222141 | MS.gene057887:CDS |
| CATCTTAAAAGTATTTATTT+AGG | 0.235681 | 5.3:+69221682 | MS.gene057887:CDS |
| AACAACAACAACATCTCTTT+TGG | 0.262074 | 5.3:+69219335 | MS.gene057887:CDS |
| TTATCTTTATCTGGACATTC+TGG | 0.270259 | 5.3:-69221250 | None:intergenic |
| GAATGATCTTGATCTGTTAA+AGG | 0.278274 | 5.3:-69221634 | None:intergenic |
| GCTATGAGCAAGTTCACTTT+TGG | 0.280909 | 5.3:+69221577 | MS.gene057887:CDS |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5.3:+69219509 | MS.gene057887:CDS |
| CATCAAAGGCTACGTAACTA+TGG | 0.301401 | 5.3:+69222060 | MS.gene057887:CDS |
| AAGGTAATGATTATTGATTC+AGG | 0.310716 | 5.3:+69221757 | MS.gene057887:CDS |
| TAGAGCACAGATGGATTTCT+TGG | 0.323913 | 5.3:+69222119 | MS.gene057887:CDS |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5.3:-69219477 | None:intergenic |
| TTCATGGTCCAGCTAATCTT+TGG | 0.332582 | 5.3:+69221326 | MS.gene057887:CDS |
| GGAGTTGTTGGACTTGGATC+TGG | 0.346598 | 5.3:+69221460 | MS.gene057887:CDS |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5.3:-69219497 | None:intergenic |
| GCTCGATGTTTAAACCGTTT+AGG | 0.384979 | 5.3:-69219295 | None:intergenic |
| AAGAAGGAACATTGAACATT+GGG | 0.393773 | 5.3:+69221383 | MS.gene057887:CDS |
| AAATAATAGCTCAACAGTTC+AGG | 0.397781 | 5.3:+69219408 | MS.gene057887:CDS |
| AGCCAAGGAGTTGTTGGACT+TGG | 0.412091 | 5.3:+69221454 | MS.gene057887:CDS |
| ACTAAATCAGAAGGAATTCA+TGG | 0.413456 | 5.3:+69221310 | MS.gene057887:CDS |
| TAAGCCCATTGAAGAATTAT+CGG | 0.419091 | 5.3:+69222194 | MS.gene057887:CDS |
| AGCTATTATTTCAGATTCAA+TGG | 0.419760 | 5.3:-69219396 | None:intergenic |
| TGACGAGTGTCATCACTTAT+CGG | 0.419794 | 5.3:-69221727 | None:intergenic |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5.3:-69219504 | None:intergenic |
| TTTGTAAACCAAAGATTAGC+TGG | 0.424694 | 5.3:-69221334 | None:intergenic |
| GAATTCCTTCTGATTTAGTA+AGG | 0.425067 | 5.3:-69221306 | None:intergenic |
| TCCAAGATGTGATGATTTGA+AGG | 0.431291 | 5.3:+69221213 | MS.gene057887:CDS |
| TCCTTCAAATCATCACATCT+TGG | 0.433083 | 5.3:-69221214 | None:intergenic |
| AAAAGAATTAGATGGGAAAG+AGG | 0.438382 | 5.3:+69221837 | MS.gene057887:CDS |
| TTCAGGTATCTCATGAAATT+CGG | 0.440637 | 5.3:+69219425 | MS.gene057887:CDS |
| GGAATGGCATATGTATCTTT+GGG | 0.443169 | 5.3:-69219476 | None:intergenic |
| TGTGATGATTTGAAGGATAT+CGG | 0.443834 | 5.3:+69221220 | MS.gene057887:CDS |
| GAGGTAAAACCGCATATACT+TGG | 0.447459 | 5.3:+69222093 | MS.gene057887:CDS |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5.3:+69219501 | MS.gene057887:CDS |
| AAGGACCGATAATTCTTCAA+TGG | 0.466438 | 5.3:-69222199 | None:intergenic |
| ACTAGCATCGGCAAGTGGTT+GGG | 0.472163 | 5.3:-69219264 | None:intergenic |
| AGGACCGATAATTCTTCAAT+GGG | 0.473289 | 5.3:-69222198 | None:intergenic |
| TACTAGCATCGGCAAGTGGT+TGG | 0.475730 | 5.3:-69219265 | None:intergenic |
| TGACACTCGTCAAGCTCATA+AGG | 0.481324 | 5.3:+69221738 | MS.gene057887:CDS |
| GCTAGTACTCAAAACCTAAA+CGG | 0.482408 | 5.3:+69219281 | MS.gene057887:CDS |
| ATCCAAGTCCAACAACTCCT+TGG | 0.492625 | 5.3:-69221456 | None:intergenic |
| AAAGAATTAGATGGGAAAGA+GGG | 0.492739 | 5.3:+69221838 | MS.gene057887:CDS |
| CACAAGTGTTACGAGAAAGA+TGG | 0.496565 | 5.3:+69221880 | MS.gene057887:CDS |
| AAAGAAGGAACATTGAACAT+TGG | 0.499741 | 5.3:+69221382 | MS.gene057887:CDS |
| TATACTTATACAGATAAAGA+AGG | 0.512321 | 5.3:+69221985 | MS.gene057887:CDS |
| GGGAAAGAGGGAGAAAAGAA+AGG | 0.514345 | 5.3:+69221850 | MS.gene057887:CDS |
| CTGCAATCGAAACTCTCCTT+AGG | 0.517885 | 5.3:-69221187 | None:intergenic |
| TGTTCCTTCTTTATCGCATG+TGG | 0.517983 | 5.3:-69221371 | None:intergenic |
| GAGTTGTTGGACTTGGATCT+GGG | 0.528801 | 5.3:+69221461 | MS.gene057887:CDS |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5.3:-69219492 | None:intergenic |
| ACAAGTGTTACGAGAAAGAT+GGG | 0.545256 | 5.3:+69221881 | MS.gene057887:CDS |
| ACTTGGAAGTAGAGCACAGA+TGG | 0.546510 | 5.3:+69222110 | MS.gene057887:CDS |
| ATCAAAGGCTACGTAACTAT+GGG | 0.546671 | 5.3:+69222061 | MS.gene057887:CDS |
| TATATATGCTTAACAGTGGA+AGG | 0.549698 | 5.3:+69222021 | MS.gene057887:CDS |
| ACACATATTCTTATTCTGAA+AGG | 0.569596 | 5.3:-69222218 | None:intergenic |
| AAAGACCTTACTAAATCAGA+AGG | 0.577047 | 5.3:+69221301 | MS.gene057887:CDS |
| GAAACCACATGCGATAAAGA+AGG | 0.587474 | 5.3:+69221367 | MS.gene057887:CDS |
| TCGTTTCTGCGACAAAATTG+TGG | 0.590151 | 5.3:-69221541 | None:intergenic |
| AAAATGAAAAGTATCATCAA+AGG | 0.596410 | 5.3:+69222046 | MS.gene057887:CDS |
| AGCATGTATCAAGAAGCCTA+AGG | 0.607940 | 5.3:+69221171 | MS.gene057887:CDS |
| AAGACTTGTGAATCTAACCT+AGG | 0.612320 | 5.3:+69219533 | MS.gene057887:CDS |
| TGAGTACTAGCATCGGCAAG+TGG | 0.618274 | 5.3:-69219269 | None:intergenic |
| ATACTTATACAGATAAAGAA+GGG | 0.623826 | 5.3:+69221986 | MS.gene057887:CDS |
| GCTCTACTTCCAAGTATATG+CGG | 0.651889 | 5.3:-69222102 | None:intergenic |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5.3:+69219485 | MS.gene057887:CDS |
| TAACTATGGGAAGTCATCAG+AGG | 0.667075 | 5.3:+69222074 | MS.gene057887:CDS |
| ACATTATATATGCTTAACAG+TGG | 0.673012 | 5.3:+69222017 | MS.gene057887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATTTTTTAAATAAAT+AGG | - | chr5.3:69220731-69220750 | None:intergenic | 0.0% |
| !!! | ATATATTTTTTAAATAAATA+GGG | - | chr5.3:69220730-69220749 | None:intergenic | 0.0% |
| !! | TGAAAATTATTATAAATAAG+GGG | - | chr5.3:69220458-69220477 | None:intergenic | 10.0% |
| !!! | ACAAAAATTGTTTTATAAAA+AGG | - | chr5.3:69220671-69220690 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTCTTATATTAA+AGG | + | chr5.3:69221094-69221113 | MS.gene057887:intron | 10.0% |
| !!! | CAAAAATTGTTTTATAAAAA+GGG | - | chr5.3:69220670-69220689 | None:intergenic | 10.0% |
| !! | AATCATTTATTTGTTTGAAA+TGG | + | chr5.3:69219791-69219810 | MS.gene057887:intron | 15.0% |
| !! | AATCCAACATTAATTAAATT+TGG | + | chr5.3:69219621-69219640 | MS.gene057887:intron | 15.0% |
| !! | ATAGAAAAATATGTTTCATT+AGG | + | chr5.3:69220573-69220592 | MS.gene057887:intron | 15.0% |
| !! | GATTGAAATATTCATTTATT+TGG | + | chr5.3:69220538-69220557 | MS.gene057887:intron | 15.0% |
| !! | GTAATATAAATTAGATTAGA+TGG | + | chr5.3:69220275-69220294 | MS.gene057887:intron | 15.0% |
| !! | TAGAAAAATATGTTTCATTA+GGG | + | chr5.3:69220574-69220593 | MS.gene057887:intron | 15.0% |
| !! | TTCTCAAAAATCTTATAAAT+AGG | - | chr5.3:69220637-69220656 | None:intergenic | 15.0% |
| !!! | AATTAATTTCTATGTTTTGA+CGG | + | chr5.3:69220051-69220070 | MS.gene057887:intron | 15.0% |
| !!! | CATCTTAAAAGTATTTATTT+AGG | + | chr5.3:69221682-69221701 | MS.gene057887:CDS | 15.0% |
| !!! | CTAAATAAATACTTTTAAGA+TGG | - | chr5.3:69221684-69221703 | None:intergenic | 15.0% |
| !!! | GATAATATGAGAATTTTTTT+TGG | - | chr5.3:69221519-69221538 | None:intergenic | 15.0% |
| !! | AAAGTAGAAAAAGAATTAGA+TGG | + | chr5.3:69221829-69221848 | MS.gene057887:CDS | 20.0% |
| !! | AAGTAGAAAAAGAATTAGAT+GGG | + | chr5.3:69221830-69221849 | MS.gene057887:CDS | 20.0% |
| !! | AATTCCTCAATTAAAACATT+TGG | + | chr5.3:69220477-69220496 | MS.gene057887:intron | 20.0% |
| !! | ACCAAAATAACCATATATTT+AGG | + | chr5.3:69220938-69220957 | MS.gene057887:intron | 20.0% |
| !! | ATACTTATACAGATAAAGAA+GGG | + | chr5.3:69221986-69222005 | MS.gene057887:CDS | 20.0% |
| !! | CATAAATCTTTATCTTTATC+TGG | - | chr5.3:69221262-69221281 | None:intergenic | 20.0% |
| !! | CCAAAATAACCATATATTTA+GGG | + | chr5.3:69220939-69220958 | MS.gene057887:intron | 20.0% |
| !! | TATACTTATACAGATAAAGA+AGG | + | chr5.3:69221985-69222004 | MS.gene057887:CDS | 20.0% |
| !! | TGACCAAATTTAATTAATGT+TGG | - | chr5.3:69219627-69219646 | None:intergenic | 20.0% |
| !! | TTATTTAGATTCACATGTAT+GGG | - | chr5.3:69220086-69220105 | None:intergenic | 20.0% |
| !! | TTTATTTAGATTCACATGTA+TGG | - | chr5.3:69220087-69220106 | None:intergenic | 20.0% |
| !!! | AAAATGAAAAGTATCATCAA+AGG | + | chr5.3:69222046-69222065 | MS.gene057887:CDS | 20.0% |
| !!! | ATTTTACCAAAATGATCATA+TGG | + | chr5.3:69220875-69220894 | MS.gene057887:intron | 20.0% |
| !!! | CTCTGAAAAAAAAAAAATCA+AGG | - | chr5.3:69220327-69220346 | None:intergenic | 20.0% |
| !!! | TATTTTCAAAAATATCTACG+TGG | + | chr5.3:69220146-69220165 | MS.gene057887:intron | 20.0% |
| !!! | TGTTTTTCTTATATTAAAGG+TGG | + | chr5.3:69221097-69221116 | MS.gene057887:intron | 20.0% |
| !!! | TTATAATAAAGTGTCTTTTG+AGG | + | chr5.3:69222164-69222183 | MS.gene057887:CDS | 20.0% |
| !!! | TTATCCAAATGTTTTAATTG+AGG | - | chr5.3:69220484-69220503 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAGAGGATAAATA+AGG | - | chr5.3:69220431-69220450 | None:intergenic | 20.0% |
| ! | AAAAATCAAGGTCATATAAC+TGG | - | chr5.3:69220315-69220334 | None:intergenic | 25.0% |
| ! | AAAGTAAATTGGATTTACCT+AGG | - | chr5.3:69219553-69219572 | None:intergenic | 25.0% |
| ! | AAATTAGATTAGATGGTACA+AGG | + | chr5.3:69220282-69220301 | MS.gene057887:intron | 25.0% |
| ! | AATCAAACCAATAACTAAGA+AGG | + | chr5.3:69219726-69219745 | MS.gene057887:intron | 25.0% |
| ! | ACATTATATATGCTTAACAG+TGG | + | chr5.3:69222017-69222036 | MS.gene057887:CDS | 25.0% |
| ! | AGCTATTATTTCAGATTCAA+TGG | - | chr5.3:69219399-69219418 | None:intergenic | 25.0% |
| ! | CAAATTGATGTTATAAGTCA+AGG | - | chr5.3:69220357-69220376 | None:intergenic | 25.0% |
| ! | CTTGACTTATAACATCAATT+TGG | + | chr5.3:69220355-69220374 | MS.gene057887:intron | 25.0% |
| ! | GTGACTTTCAATCTTATAAA+AGG | + | chr5.3:69222141-69222160 | MS.gene057887:CDS | 25.0% |
| ! | TATTTAGATTCACATGTATG+GGG | - | chr5.3:69220085-69220104 | None:intergenic | 25.0% |
| ! | TTTAGATGAAACTATTCTAC+AGG | - | chr5.3:69219832-69219851 | None:intergenic | 25.0% |
| !! | AAGATACAATTTTCTCTCTA+TGG | + | chr5.3:69221033-69221052 | MS.gene057887:intron | 25.0% |
| !! | CCCTAAATATATGGTTATTT+TGG | - | chr5.3:69220942-69220961 | None:intergenic | 25.0% |
| !! | TTAAATAAATAGGGGTATGT+TGG | - | chr5.3:69220721-69220740 | None:intergenic | 25.0% |
| !!! | AAGGTAATGATTATTGATTC+AGG | + | chr5.3:69221757-69221776 | MS.gene057887:CDS | 25.0% |
| !!! | AGTTAAAAAAAGTGTTACGT+CGG | + | chr5.3:69220609-69220628 | MS.gene057887:intron | 25.0% |
| !!! | AGTTTTAGTGTGAAAAAGAA+TGG | - | chr5.3:69219218-69219237 | None:intergenic | 25.0% |
| !!! | GATCATTTTGGTAAAATCAT+GGG | - | chr5.3:69220872-69220891 | None:intergenic | 25.0% |
| !!! | TGATCATTTTGGTAAAATCA+TGG | - | chr5.3:69220873-69220892 | None:intergenic | 25.0% |
| AAAAGAATTAGATGGGAAAG+AGG | + | chr5.3:69221837-69221856 | MS.gene057887:CDS | 30.0% | |
| AAAGAAGGAACATTGAACAT+TGG | + | chr5.3:69221382-69221401 | MS.gene057887:CDS | 30.0% | |
| AAAGAATTAGATGGGAAAGA+GGG | + | chr5.3:69221838-69221857 | MS.gene057887:CDS | 30.0% | |
| AAAGACCTTACTAAATCAGA+AGG | + | chr5.3:69221301-69221320 | MS.gene057887:CDS | 30.0% | |
| AAATAATAGCTCAACAGTTC+AGG | + | chr5.3:69219408-69219427 | MS.gene057887:CDS | 30.0% | |
| AAGAAGGAACATTGAACATT+GGG | + | chr5.3:69221383-69221402 | MS.gene057887:CDS | 30.0% | |
| AAGTCAACCTTCTTAGTTAT+TGG | - | chr5.3:69219736-69219755 | None:intergenic | 30.0% | |
| AATAACTAAGAAGGTTGACT+TGG | + | chr5.3:69219735-69219754 | MS.gene057887:intron | 30.0% | |
| ACTAAATCAGAAGGAATTCA+TGG | + | chr5.3:69221310-69221329 | MS.gene057887:CDS | 30.0% | |
| AGTGATTAATAAGCTCCAAT+AGG | - | chr5.3:69219890-69219909 | None:intergenic | 30.0% | |
| GAATGATCTTGATCTGTTAA+AGG | - | chr5.3:69221637-69221656 | None:intergenic | 30.0% | |
| GAATTCCTTCTGATTTAGTA+AGG | - | chr5.3:69221309-69221328 | None:intergenic | 30.0% | |
| GGTTAAAAAAGATGCATCTA+GGG | - | chr5.3:69219378-69219397 | None:intergenic | 30.0% | |
| TAAGCCCATTGAAGAATTAT+CGG | + | chr5.3:69222194-69222213 | MS.gene057887:CDS | 30.0% | |
| TACCAAAATGATCATATGGA+CGG | + | chr5.3:69220879-69220898 | MS.gene057887:intron | 30.0% | |
| TATATATGCTTAACAGTGGA+AGG | + | chr5.3:69222021-69222040 | MS.gene057887:CDS | 30.0% | |
| TGGTTAAAAAAGATGCATCT+AGG | - | chr5.3:69219379-69219398 | None:intergenic | 30.0% | |
| TGTGATGATTTGAAGGATAT+CGG | + | chr5.3:69221220-69221239 | MS.gene057887:CDS | 30.0% | |
| TTATCTTTATCTGGACATTC+TGG | - | chr5.3:69221253-69221272 | None:intergenic | 30.0% | |
| TTCAAAGTGAAAGTTATTGC+AGG | + | chr5.3:69220253-69220272 | MS.gene057887:intron | 30.0% | |
| TTCAGGTATCTCATGAAATT+CGG | + | chr5.3:69219425-69219444 | MS.gene057887:CDS | 30.0% | |
| TTTGTAAACCAAAGATTAGC+TGG | - | chr5.3:69221337-69221356 | None:intergenic | 30.0% | |
| ! | AAACAACTGATTCATCCTAT+TGG | + | chr5.3:69219872-69219891 | MS.gene057887:intron | 30.0% |
| ! | AACAACAACAACATCTCTTT+TGG | + | chr5.3:69219335-69219354 | MS.gene057887:CDS | 30.0% |
| ! | CTTTAAGAGAGAGTAAGTTT+AGG | - | chr5.3:69220785-69220804 | None:intergenic | 30.0% |
| !! | AGACAAAAATTGAGTTGAAG+AGG | + | chr5.3:69221944-69221963 | MS.gene057887:CDS | 30.0% |
| !! | GACAAAAATTGAGTTGAAGA+GGG | + | chr5.3:69221945-69221964 | MS.gene057887:CDS | 30.0% |
| !! | TTCGGTGTTAAAAATTACGA+TGG | + | chr5.3:69219443-69219462 | MS.gene057887:CDS | 30.0% |
| !!! | AAGGGGTTTTTTTTTTTGAG+AGG | - | chr5.3:69220441-69220460 | None:intergenic | 30.0% |
| !!! | CGCTATAATGTCACTTTTAT+AGG | + | chr5.3:69220110-69220129 | MS.gene057887:intron | 30.0% |
| !!! | GGTTATTTTGGTTAAATCAC+AGG | - | chr5.3:69220930-69220949 | None:intergenic | 30.0% |
| !!! | GTGAAAAAGAATGGTTTTAG+AGG | - | chr5.3:69219209-69219228 | None:intergenic | 30.0% |
| AACCATATATTTAGGGACAG+AGG | + | chr5.3:69220946-69220965 | MS.gene057887:intron | 35.0% | |
| AAGACTTGTGAATCTAACCT+AGG | + | chr5.3:69219533-69219552 | MS.gene057887:CDS | 35.0% | |
| AAGGACCGATAATTCTTCAA+TGG | - | chr5.3:69222202-69222221 | None:intergenic | 35.0% | |
| ACAAGTGTTACGAGAAAGAT+GGG | + | chr5.3:69221881-69221900 | MS.gene057887:CDS | 35.0% | |
| ACCAAAATGATCATATGGAC+GGG | + | chr5.3:69220880-69220899 | MS.gene057887:intron | 35.0% | |
| AGGACCGATAATTCTTCAAT+GGG | - | chr5.3:69222201-69222220 | None:intergenic | 35.0% | |
| ATCAAAGGCTACGTAACTAT+GGG | + | chr5.3:69222061-69222080 | MS.gene057887:CDS | 35.0% | |
| GCTAGTACTCAAAACCTAAA+CGG | + | chr5.3:69219281-69219300 | MS.gene057887:CDS | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | - | chr5.3:69219479-69219498 | None:intergenic | 35.0% | |
| TACCTCTGTCCCTAAATATA+TGG | - | chr5.3:69220951-69220970 | None:intergenic | 35.0% | |
| TCCAAGATGTGATGATTTGA+AGG | + | chr5.3:69221213-69221232 | MS.gene057887:CDS | 35.0% | |
| TCCTTCAAATCATCACATCT+TGG | - | chr5.3:69221217-69221236 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | - | chr5.3:69219480-69219499 | None:intergenic | 35.0% | |
| TTGGTAAAATCATGGGAATG+AGG | - | chr5.3:69220865-69220884 | None:intergenic | 35.0% | |
| ! | ATCATCTATCTCTTTTGTGC+TGG | - | chr5.3:69221422-69221441 | None:intergenic | 35.0% |
| !! | CTATGAGCAAGTTCACTTTT+GGG | + | chr5.3:69221578-69221597 | MS.gene057887:CDS | 35.0% |
| !!! | TAGGTTTTGAGTACTAGCAT+CGG | - | chr5.3:69219279-69219298 | None:intergenic | 35.0% |
| AGCATGTATCAAGAAGCCTA+AGG | + | chr5.3:69221171-69221190 | MS.gene057887:CDS | 40.0% | |
| CACAAGTGTTACGAGAAAGA+TGG | + | chr5.3:69221880-69221899 | MS.gene057887:CDS | 40.0% | |
| CATCAAAGGCTACGTAACTA+TGG | + | chr5.3:69222060-69222079 | MS.gene057887:CDS | 40.0% | |
| CCAAAATGATCATATGGACG+GGG | + | chr5.3:69220881-69220900 | MS.gene057887:intron | 40.0% | |
| GAAACCACATGCGATAAAGA+AGG | + | chr5.3:69221367-69221386 | MS.gene057887:CDS | 40.0% | |
| GAGGTAAAACCGCATATACT+TGG | + | chr5.3:69222093-69222112 | MS.gene057887:CDS | 40.0% | |
| GATGAAGAACCAAAAAGCCA+AGG | + | chr5.3:69221439-69221458 | MS.gene057887:CDS | 40.0% | |
| GCTCGATGTTTAAACCGTTT+AGG | - | chr5.3:69219298-69219317 | None:intergenic | 40.0% | |
| GCTCTACTTCCAAGTATATG+CGG | - | chr5.3:69222105-69222124 | None:intergenic | 40.0% | |
| TAACTATGGGAAGTCATCAG+AGG | + | chr5.3:69222074-69222093 | MS.gene057887:CDS | 40.0% | |
| TCGTTTCTGCGACAAAATTG+TGG | - | chr5.3:69221544-69221563 | None:intergenic | 40.0% | |
| TCTACGTGGCGTGATTTAAT+CGG | + | chr5.3:69220160-69220179 | MS.gene057887:intron | 40.0% | |
| TGACGAGTGTCATCACTTAT+CGG | - | chr5.3:69221730-69221749 | None:intergenic | 40.0% | |
| TGTCTTAATCGTAAGTGCAC+AGG | - | chr5.3:69220993-69221012 | None:intergenic | 40.0% | |
| TGTTCCTTCTTTATCGCATG+TGG | - | chr5.3:69221374-69221393 | None:intergenic | 40.0% | |
| TTCATGGTCCAGCTAATCTT+TGG | + | chr5.3:69221326-69221345 | MS.gene057887:CDS | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | + | chr5.3:69219509-69219528 | MS.gene057887:CDS | 40.0% |
| ! | GCTATGAGCAAGTTCACTTT+TGG | + | chr5.3:69221577-69221596 | MS.gene057887:CDS | 40.0% |
| ! | TAGAGCACAGATGGATTTCT+TGG | + | chr5.3:69222119-69222138 | MS.gene057887:CDS | 40.0% |
| !! | TCTATCTCTTTTGTGCTGGT+TGG | - | chr5.3:69221418-69221437 | None:intergenic | 40.0% |
| AAGCCATATGAGATCGCTTC+CGG | - | chr5.3:69219507-69219526 | None:intergenic | 45.0% | |
| ACATATGCCATTCCAGACAC+CGG | + | chr5.3:69219485-69219504 | MS.gene057887:CDS | 45.0% | |
| ACTTGGAAGTAGAGCACAGA+TGG | + | chr5.3:69222110-69222129 | MS.gene057887:CDS | 45.0% | |
| ATCCAAGTCCAACAACTCCT+TGG | - | chr5.3:69221459-69221478 | None:intergenic | 45.0% | |
| CCAAAAAGCCAAGGAGTTGT+TGG | + | chr5.3:69221448-69221467 | MS.gene057887:CDS | 45.0% | |
| CTGCAATCGAAACTCTCCTT+AGG | - | chr5.3:69221190-69221209 | None:intergenic | 45.0% | |
| GAGTTGTTGGACTTGGATCT+GGG | + | chr5.3:69221461-69221480 | MS.gene057887:CDS | 45.0% | |
| GGGAAAGAGGGAGAAAAGAA+AGG | + | chr5.3:69221850-69221869 | MS.gene057887:CDS | 45.0% | |
| TGACACTCGTCAAGCTCATA+AGG | + | chr5.3:69221738-69221757 | MS.gene057887:CDS | 45.0% | |
| ! | CCCCGTCCATATGATCATTT+TGG | - | chr5.3:69220884-69220903 | None:intergenic | 45.0% |
| !! | AGCAAGTTCACTTTTGGGCA+CGG | + | chr5.3:69221583-69221602 | MS.gene057887:CDS | 45.0% |
| !! | CCAACAACTCCTTGGCTTTT+TGG | - | chr5.3:69221451-69221470 | None:intergenic | 45.0% |
| !! | ATTAAAAAAATAAAGTAAAT+TGG | - | chr5.3:69219564-69219583 | None:intergenic | 5.0% |
| !! | ATTGAAAATTATTATAAATA+AGG | - | chr5.3:69220460-69220479 | None:intergenic | 5.0% |
| !! | TAAAAAATAATTAATATAGT+TGG | - | chr5.3:69220698-69220717 | None:intergenic | 5.0% |
| !! | TTGAAAATTATTATAAATAA+GGG | - | chr5.3:69220459-69220478 | None:intergenic | 5.0% |
| !!! | GATAAAATTTTAAAAAAAAA+CGG | + | chr5.3:69220499-69220518 | MS.gene057887:intron | 5.0% |
| !!! | TATATTTTTTAAATAAATAG+GGG | - | chr5.3:69220729-69220748 | None:intergenic | 5.0% |
| ACACCGGAAGCGATCTCATA+TGG | + | chr5.3:69219501-69219520 | MS.gene057887:CDS | 50.0% | |
| AGCCAAGGAGTTGTTGGACT+TGG | + | chr5.3:69221454-69221473 | MS.gene057887:CDS | 50.0% | |
| GGAGTTGTTGGACTTGGATC+TGG | + | chr5.3:69221460-69221479 | MS.gene057887:CDS | 50.0% | |
| !! | ACTAGCATCGGCAAGTGGTT+GGG | - | chr5.3:69219267-69219286 | None:intergenic | 50.0% |
| !! | TACTAGCATCGGCAAGTGGT+TGG | - | chr5.3:69219268-69219287 | None:intergenic | 50.0% |
| !! | TGAGTACTAGCATCGGCAAG+TGG | - | chr5.3:69219272-69219291 | None:intergenic | 50.0% |
| ATCGCTTCCGGTGTCTGGAA+TGG | - | chr5.3:69219495-69219514 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | - | chr5.3:69219500-69219519 | None:intergenic | 55.0% | |
| !! | GTTCACTTTTGGGCACGGTG+TGG | + | chr5.3:69221588-69221607 | MS.gene057887:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 69219200 | 69222230 | 69219200 | ID=MS.gene057887 |
| chr5.3 | mRNA | 69219200 | 69222230 | 69219200 | ID=MS.gene057887.t1;Parent=MS.gene057887 |
| chr5.3 | exon | 69219200 | 69219554 | 69219200 | ID=MS.gene057887.t1.exon1;Parent=MS.gene057887.t1 |
| chr5.3 | CDS | 69219200 | 69219554 | 69219200 | ID=cds.MS.gene057887.t1;Parent=MS.gene057887.t1 |
| chr5.3 | exon | 69221116 | 69222230 | 69221116 | ID=MS.gene057887.t1.exon2;Parent=MS.gene057887.t1 |
| chr5.3 | CDS | 69221116 | 69222230 | 69221116 | ID=cds.MS.gene057887.t1;Parent=MS.gene057887.t1 |
| Gene Sequence |
| Protein sequence |
