Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40099.t1 | XP_003608341.1 | 95.8 | 524 | 22 | 0 | 7 | 530 | 6 | 529 | 1.60E-274 | 954.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40099.t1 | P49295 | 72.4 | 468 | 128 | 1 | 63 | 530 | 76 | 542 | 1.6e-190 | 667.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40099.t1 | G7JU04 | 95.8 | 524 | 22 | 0 | 7 | 530 | 6 | 529 | 1.1e-274 | 954.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053625 | MS.gene40099 | 0.81418 | 1.76E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40099.t1 | MTR_4g092820 | 95.437 | 526 | 24 | 0 | 5 | 530 | 4 | 529 | 0.0 | 1005 |
| MS.gene40099.t1 | MTR_3g111190 | 65.703 | 519 | 172 | 4 | 14 | 530 | 17 | 531 | 0.0 | 692 |
| MS.gene40099.t1 | MTR_5g067410 | 69.677 | 465 | 139 | 2 | 63 | 525 | 73 | 537 | 0.0 | 665 |
| MS.gene40099.t1 | MTR_3g111190 | 69.195 | 435 | 133 | 1 | 97 | 530 | 1 | 435 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40099.t1 | AT1G58290 | 70.716 | 461 | 128 | 3 | 65 | 522 | 79 | 535 | 0.0 | 660 |
| MS.gene40099.t1 | AT1G09940 | 70.021 | 467 | 133 | 4 | 63 | 527 | 68 | 529 | 0.0 | 655 |
| MS.gene40099.t1 | AT2G31250 | 61.290 | 465 | 167 | 7 | 68 | 527 | 67 | 523 | 0.0 | 540 |
Find 125 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGTGCATTTGGGAATTT+TGG | 0.112763 | 4.3:+21360778 | None:intergenic |
| GATGCTAGGGTGTTGGTAAT+TGG | 0.178842 | 4.3:-21359686 | MS.gene40099:CDS |
| ATCCTTCAACTCCTTCTTAA+TGG | 0.206050 | 4.3:+21359568 | None:intergenic |
| GGTCTTGACTCCCTTGTTCT+TGG | 0.227585 | 4.3:-21359920 | MS.gene40099:CDS |
| TCAGATCTTGTTGTATAATA+AGG | 0.278776 | 4.3:-21359975 | MS.gene40099:CDS |
| TGGGGAGGGAATGTGGATTT+AGG | 0.284186 | 4.3:+21360821 | None:intergenic |
| AGCAATGTATGCCCTTAGTA+TGG | 0.288199 | 4.3:-21359087 | MS.gene40099:CDS |
| AAATTGAGCAGGGGAGAATT+TGG | 0.291856 | 4.3:+21360844 | None:intergenic |
| GTTAAACAAGTTGTTAAATC+TGG | 0.297055 | 4.3:-21359875 | MS.gene40099:CDS |
| ACTTGAGGCCACTGAGCTTC+TGG | 0.297366 | 4.3:+21360451 | None:intergenic |
| ATGCTAGGGTGTTGGTAATT+GGG | 0.306611 | 4.3:-21359685 | MS.gene40099:CDS |
| GAAGCTAGTGATTAAACATT+TGG | 0.322618 | 4.3:-21359648 | MS.gene40099:CDS |
| ATCAGAACGAAGGGTGCATT+TGG | 0.332400 | 4.3:+21360769 | None:intergenic |
| AAGCGTTCAGAGTCTTCTTT+TGG | 0.341676 | 4.3:-21359710 | MS.gene40099:CDS |
| GGTAATTGGGGCGGGGAAGA+TGG | 0.348702 | 4.3:-21359672 | MS.gene40099:CDS |
| GGAAGCACGGGGAATTATTC+AGG | 0.359513 | 4.3:-21359261 | MS.gene40099:CDS |
| GCTCTAAATTTCTTAATAGT+AGG | 0.365495 | 4.3:+21359191 | None:intergenic |
| TCAGTGGCCTCAAGTTATTC+AGG | 0.365530 | 4.3:-21360443 | MS.gene40099:CDS |
| GGCTATCTCTGTTGGAAAAC+GGG | 0.366509 | 4.3:-21359804 | MS.gene40099:CDS |
| GTAATTGGGGCGGGGAAGAT+GGG | 0.376026 | 4.3:-21359671 | MS.gene40099:CDS |
| GGAGCGAAGAGTGGCGGTGG+AGG | 0.392096 | 4.3:+21360871 | None:intergenic |
| ATTAAACATTTGGTTGCTAA+AGG | 0.398912 | 4.3:-21359638 | MS.gene40099:CDS |
| CTTCTCACACCTTGGCCAAC+AGG | 0.404238 | 4.3:+21359422 | None:intergenic |
| AGTTTCTCGCGCATCTCAAC+AGG | 0.404341 | 4.3:+21360481 | None:intergenic |
| AAGAGCAGCATAATTGTGAT+TGG | 0.413113 | 4.3:-21360523 | MS.gene40099:CDS |
| TTCAAGCAGGCTATCTCTGT+TGG | 0.424603 | 4.3:-21359812 | MS.gene40099:CDS |
| GCGAAGAGTGGCGGTGGAGG+AGG | 0.425211 | 4.3:+21360874 | None:intergenic |
| ACGCCTGGATCCACGTTCCT+TGG | 0.425824 | 4.3:+21359374 | None:intergenic |
| GACTCCCTTGTTCTTGGAGA+AGG | 0.433930 | 4.3:-21359914 | MS.gene40099:CDS |
| ACAGAGACTAACATTTCGTC+TGG | 0.438749 | 4.3:-21359776 | MS.gene40099:CDS |
| GATCTCGAGAGGAGAAGGTT+TGG | 0.440833 | 4.3:+21360718 | None:intergenic |
| GCAATCTCAATGGCGGCTGC+AGG | 0.442620 | 4.3:-21360905 | None:intergenic |
| ATCTCAATGGCGGCTGCAGG+TGG | 0.446675 | 4.3:-21360902 | None:intergenic |
| TGAGACGGAAATATCATTGA+TGG | 0.449585 | 4.3:-21358946 | MS.gene40099:CDS |
| ATTGTGAATAAGCTACTTCA+TGG | 0.456488 | 4.3:-21359062 | MS.gene40099:CDS |
| AGGCTATCTCTGTTGGAAAA+CGG | 0.456584 | 4.3:-21359805 | MS.gene40099:CDS |
| TAATTGGGGCGGGGAAGATG+GGG | 0.457063 | 4.3:-21359670 | MS.gene40099:CDS |
| TTAAACATTTGGTTGCTAAA+GGG | 0.458547 | 4.3:-21359637 | MS.gene40099:CDS |
| TCAGAACGAAGGGTGCATTT+GGG | 0.463289 | 4.3:+21360770 | None:intergenic |
| AAATCTGGACAAGGGGTGCC+AGG | 0.464157 | 4.3:-21359860 | MS.gene40099:CDS |
| GAGTCGATGGGGAGGGAATG+TGG | 0.465485 | 4.3:+21360814 | None:intergenic |
| TTCTCAAGTTCCGACACGCC+TGG | 0.475568 | 4.3:+21359359 | None:intergenic |
| TGCCATTAAGAAGGAGTTGA+AGG | 0.475852 | 4.3:-21359570 | MS.gene40099:CDS |
| GGAGGAATTGAATACATTTG+AGG | 0.476494 | 4.3:-21359240 | MS.gene40099:CDS |
| TATTCACAATACCCATACTA+AGG | 0.478653 | 4.3:+21359075 | None:intergenic |
| GTGGATTTAGGAAATTGAGC+AGG | 0.482754 | 4.3:+21360833 | None:intergenic |
| AGAAAAGATCAGAGTCAAGA+TGG | 0.484888 | 4.3:-21358922 | MS.gene40099:CDS |
| AATTTAGAGCTTATGTTGAA+AGG | 0.485422 | 4.3:-21359178 | MS.gene40099:CDS |
| TAGGGTGTTGGTAATTGGGG+CGG | 0.485807 | 4.3:-21359681 | MS.gene40099:CDS |
| TTTCTTACTGTCAGCTGAAG+AGG | 0.489860 | 4.3:+21360688 | None:intergenic |
| TTCTGTTAGTTCAGCTGCTG+TGG | 0.490414 | 4.3:-21359747 | MS.gene40099:CDS |
| TAGACGTCTTTCTGATATGA+TGG | 0.497908 | 4.3:-21359531 | MS.gene40099:CDS |
| GAAAGTCAATGCCATTAAGA+AGG | 0.505774 | 4.3:-21359579 | MS.gene40099:CDS |
| ATTCCAAGGAACGTGGATCC+AGG | 0.507096 | 4.3:-21359377 | MS.gene40099:CDS |
| AATAAGTGGTTTGTTCAAGC+AGG | 0.508112 | 4.3:-21359825 | MS.gene40099:CDS |
| ATTCTTCCTCCTGTTGGCCA+AGG | 0.509125 | 4.3:-21359431 | MS.gene40099:CDS |
| GTGGAGATTCTTCCTCCTGT+TGG | 0.510627 | 4.3:-21359437 | MS.gene40099:CDS |
| AGGGTGTTGGTAATTGGGGC+GGG | 0.514106 | 4.3:-21359680 | MS.gene40099:CDS |
| GAGGCTGATGTGATCTTCAC+TGG | 0.518849 | 4.3:-21359497 | MS.gene40099:CDS |
| TAGTTCAGCTGCTGTGGAGT+TGG | 0.523446 | 4.3:-21359741 | MS.gene40099:CDS |
| ACAGAAAGCTATGGAAGCAC+GGG | 0.524843 | 4.3:-21359273 | MS.gene40099:CDS |
| GACTAACATTTCGTCTGGGT+CGG | 0.525209 | 4.3:-21359771 | MS.gene40099:CDS |
| ATCTGATGTTTAGAAATCTC+AGG | 0.527073 | 4.3:+21359992 | None:intergenic |
| TTAAGGATCTCGAGAGGAGA+AGG | 0.534319 | 4.3:+21360713 | None:intergenic |
| GGAGGAGCGAAGAGTGGCGG+TGG | 0.538915 | 4.3:+21360868 | None:intergenic |
| AAGGATTAGAGCTTCTGAGA+TGG | 0.539317 | 4.3:-21359159 | MS.gene40099:CDS |
| GTGTTAGAGAAGTCACTGAT+TGG | 0.544478 | 4.3:-21360327 | MS.gene40099:CDS |
| TGGATTTAGGAAATTGAGCA+GGG | 0.546840 | 4.3:+21360834 | None:intergenic |
| GGATAGACAACAGAAAGCTA+TGG | 0.551254 | 4.3:-21359282 | MS.gene40099:CDS |
| TGCTAGGGTGTTGGTAATTG+GGG | 0.554231 | 4.3:-21359684 | MS.gene40099:CDS |
| TTGGCCAAGGTGTGAGAAGA+CGG | 0.561651 | 4.3:-21359418 | MS.gene40099:CDS |
| AACAGAAAGCTATGGAAGCA+CGG | 0.561734 | 4.3:-21359274 | MS.gene40099:CDS |
| TTGAGCAGGGGAGAATTTGG+CGG | 0.562147 | 4.3:+21360847 | None:intergenic |
| GAAAAGATCAGAGTCAAGAT+GGG | 0.562597 | 4.3:-21358921 | MS.gene40099:CDS |
| AGCAGGGGAGAATTTGGCGG+AGG | 0.563329 | 4.3:+21360850 | None:intergenic |
| CAAGTTGTTAAATCTGGACA+AGG | 0.563618 | 4.3:-21359869 | MS.gene40099:CDS |
| GGGTGTTAAAAGAGAGTCGA+TGG | 0.563812 | 4.3:+21360801 | None:intergenic |
| ATGGTCCTATGCAGCATCTG+AGG | 0.564451 | 4.3:-21359043 | MS.gene40099:CDS |
| TCACACCTCAGATGCTGCAT+AGG | 0.570792 | 4.3:+21359038 | None:intergenic |
| TAAAAGAGAGTCGATGGGGA+GGG | 0.571739 | 4.3:+21360807 | None:intergenic |
| ATGCAGCATCTGAGGTGTGA+TGG | 0.572614 | 4.3:-21359035 | MS.gene40099:CDS |
| GGGTGTTGGTAATTGGGGCG+GGG | 0.573785 | 4.3:-21359679 | MS.gene40099:CDS |
| TCGTTGATATATCTATTCCA+AGG | 0.575192 | 4.3:-21359391 | MS.gene40099:CDS |
| GCAATGTATGCCCTTAGTAT+GGG | 0.576353 | 4.3:-21359086 | MS.gene40099:CDS |
| CATCTGTTTGAAGTAGCTGC+TGG | 0.577887 | 4.3:-21359941 | MS.gene40099:CDS |
| AGAAGTTGTTGATGCTAACA+AGG | 0.578083 | 4.3:-21359306 | MS.gene40099:CDS |
| ATGTTTAGAAATCTCAGGTA+CGG | 0.580762 | 4.3:+21359997 | None:intergenic |
| TTAAAAGAGAGTCGATGGGG+AGG | 0.584069 | 4.3:+21360806 | None:intergenic |
| TTTGACCTTCTCCAAGAACA+AGG | 0.584511 | 4.3:+21359909 | None:intergenic |
| TGCAGCATCTGAGGTGTGAT+GGG | 0.584786 | 4.3:-21359034 | MS.gene40099:CDS |
| GATGCGTGGTGACGTCTCGA+AGG | 0.587941 | 4.3:-21359120 | MS.gene40099:CDS |
| AATTGAATACATTTGAGGCG+TGG | 0.589108 | 4.3:-21359235 | MS.gene40099:CDS |
| AAGGAGATTATCAGAACGAA+GGG | 0.598177 | 4.3:+21360760 | None:intergenic |
| GGCGGAGGAGCGAAGAGTGG+CGG | 0.605304 | 4.3:+21360865 | None:intergenic |
| TAACACCGCGGTGTTGAGAG+AGG | 0.614922 | 4.3:+21360344 | None:intergenic |
| AACACCGCGGTGTTGAGAGA+GGG | 0.615162 | 4.3:+21360345 | None:intergenic |
| AGAGCCGTCTTCTCACACCT+TGG | 0.615615 | 4.3:+21359414 | None:intergenic |
| GATCAGAGTCAAGATGGGAA+AGG | 0.621872 | 4.3:-21358916 | MS.gene40099:CDS |
| TTTGGCGGAGGAGCGAAGAG+TGG | 0.622667 | 4.3:+21360862 | None:intergenic |
| ATTCACAATACCCATACTAA+GGG | 0.623282 | 4.3:+21359076 | None:intergenic |
| GGTGTTAAAAGAGAGTCGAT+GGG | 0.629384 | 4.3:+21360802 | None:intergenic |
| TATGATGGAATGTGCTGCTG+AGG | 0.629809 | 4.3:-21359516 | MS.gene40099:CDS |
| GAAGGAGATTATCAGAACGA+AGG | 0.635603 | 4.3:+21360759 | None:intergenic |
| CAGAGACTAACATTTCGTCT+GGG | 0.635999 | 4.3:-21359775 | MS.gene40099:CDS |
| AGTTGTTAAATCTGGACAAG+GGG | 0.636682 | 4.3:-21359867 | MS.gene40099:CDS |
| GAACGTGGATCCAGGCGTGT+CGG | 0.638878 | 4.3:-21359369 | MS.gene40099:CDS |
| AGTCACTGATTGGATCTCCA+AGG | 0.639826 | 4.3:-21360317 | MS.gene40099:intron |
| TACTTCAAACAGATGTTGTG+TGG | 0.642747 | 4.3:+21359949 | None:intergenic |
| CTCACACCTTGGCCAACAGG+AGG | 0.646587 | 4.3:+21359425 | None:intergenic |
| TATATCTATTCCAAGGAACG+TGG | 0.651140 | 4.3:-21359384 | MS.gene40099:CDS |
| AAGTTGTTAAATCTGGACAA+GGG | 0.651987 | 4.3:-21359868 | MS.gene40099:CDS |
| CAGAATGTATGATCTTGAGA+CGG | 0.654392 | 4.3:-21358961 | MS.gene40099:CDS |
| CATAACTCCTGAATAACTTG+AGG | 0.655387 | 4.3:+21360436 | None:intergenic |
| TTGACCTTCTCCAAGAACAA+GGG | 0.668022 | 4.3:+21359910 | None:intergenic |
| GTGTTAAAAGAGAGTCGATG+GGG | 0.677380 | 4.3:+21360803 | None:intergenic |
| TTGCAATTCCAGAAGCTCAG+TGG | 0.683759 | 4.3:-21360459 | MS.gene40099:CDS |
| AGCACGGGGAATTATTCAGG+AGG | 0.690702 | 4.3:-21359258 | MS.gene40099:CDS |
| GGTGTTGAGAGAGGGCAACA+AGG | 0.693165 | 4.3:+21360353 | None:intergenic |
| GGATTTAGGAAATTGAGCAG+GGG | 0.695899 | 4.3:+21360835 | None:intergenic |
| CAGAAAGCTATGGAAGCACG+GGG | 0.698718 | 4.3:-21359272 | MS.gene40099:CDS |
| AAATGTTTGTCAAAGATGCG+TGG | 0.708070 | 4.3:-21359134 | MS.gene40099:CDS |
| AGTTGTTGATGCTAACAAGG+AGG | 0.725440 | 4.3:-21359303 | MS.gene40099:CDS |
| GTTGCCCTCTCTCAACACCG+CGG | 0.747760 | 4.3:-21360349 | MS.gene40099:CDS |
| CAGTGACTTCTCTAACACCG+CGG | 0.783803 | 4.3:+21360332 | None:intergenic |
| GAATGCACTAGTGTACAATG+TGG | 0.788796 | 4.3:-21359339 | MS.gene40099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACATCTTAT+AGG | - | chr4.3:21359204-21359223 | MS.gene40099:CDS | 10.0% |
| !! | AAAAAAAAAAACATCTTATA+GGG | - | chr4.3:21359205-21359224 | MS.gene40099:CDS | 10.0% |
| !! | ACTGTAAAAATATAATAAGT+AGG | + | chr4.3:21359645-21359664 | None:intergenic | 15.0% |
| !! | TAAATTGAATTGAATTGAAT+TGG | + | chr4.3:21359158-21359177 | None:intergenic | 15.0% |
| !! | TAAATTTGATGTATTCTATA+TGG | - | chr4.3:21359612-21359631 | MS.gene40099:CDS | 15.0% |
| !!! | TATTATATTTTTACAGTTGA+GGG | - | chr4.3:21359648-21359667 | MS.gene40099:CDS | 15.0% |
| !!! | TTATTATATTTTTACAGTTG+AGG | - | chr4.3:21359647-21359666 | MS.gene40099:CDS | 15.0% |
| !!! | TTTCTGTTTTTGTTTGTTTT+AGG | - | chr4.3:21359242-21359261 | MS.gene40099:CDS | 20.0% |
| ! | AATACATCAAATTTAGTCTC+TGG | + | chr4.3:21359607-21359626 | None:intergenic | 25.0% |
| ! | AGATATATGAATACATACCT+TGG | + | chr4.3:21359504-21359523 | None:intergenic | 25.0% |
| ! | ATTAAACATTTGGTTGCTAA+AGG | - | chr4.3:21360163-21360182 | MS.gene40099:intron | 25.0% |
| ! | GATGTATTCTATATGGTTTA+TGG | - | chr4.3:21359619-21359638 | MS.gene40099:CDS | 25.0% |
| ! | GTTAAACAAGTTGTTAAATC+TGG | - | chr4.3:21359926-21359945 | MS.gene40099:CDS | 25.0% |
| ! | TTAAACATTTGGTTGCTAAA+GGG | - | chr4.3:21360164-21360183 | MS.gene40099:intron | 25.0% |
| !! | AATTTAGAGCTTATGTTGAA+AGG | - | chr4.3:21360623-21360642 | MS.gene40099:intron | 25.0% |
| !! | GCTCTAAATTTCTTAATAGT+AGG | + | chr4.3:21360613-21360632 | None:intergenic | 25.0% |
| !! | TCAGATCTTGTTGTATAATA+AGG | - | chr4.3:21359826-21359845 | MS.gene40099:CDS | 25.0% |
| !!! | GTTCTCTTTTGAAAACAAAA+GGG | + | chr4.3:21360344-21360363 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTAGGATATACAA+AGG | - | chr4.3:21359253-21359272 | MS.gene40099:CDS | 25.0% |
| AAGTTGTTAAATCTGGACAA+GGG | - | chr4.3:21359933-21359952 | MS.gene40099:CDS | 30.0% | |
| AATTGCAGGGATTAAATTGA+TGG | - | chr4.3:21359675-21359694 | MS.gene40099:CDS | 30.0% | |
| ATCTGATGTTTAGAAATCTC+AGG | + | chr4.3:21359812-21359831 | None:intergenic | 30.0% | |
| ATGTTTAGAAATCTCAGGTA+CGG | + | chr4.3:21359807-21359826 | None:intergenic | 30.0% | |
| ATTCACAATACCCATACTAA+GGG | + | chr4.3:21360728-21360747 | None:intergenic | 30.0% | |
| ATTGTGAATAAGCTACTTCA+TGG | - | chr4.3:21360739-21360758 | MS.gene40099:CDS | 30.0% | |
| GAAGCTAGTGATTAAACATT+TGG | - | chr4.3:21360153-21360172 | MS.gene40099:intron | 30.0% | |
| TATTCACAATACCCATACTA+AGG | + | chr4.3:21360729-21360748 | None:intergenic | 30.0% | |
| TCGTTGATATATCTATTCCA+AGG | - | chr4.3:21360410-21360429 | MS.gene40099:CDS | 30.0% | |
| TCTCTGGTATTAAGATCTTA+GGG | + | chr4.3:21359591-21359610 | None:intergenic | 30.0% | |
| ! | TGATGATTTTGCAGAAAAGT+GGG | - | chr4.3:21359777-21359796 | MS.gene40099:CDS | 30.0% |
| !! | CGTTCTCTTTTGAAAACAAA+AGG | + | chr4.3:21360345-21360364 | None:intergenic | 30.0% |
| !! | CTTATTTTCCTATCAAAACC+TGG | + | chr4.3:21359962-21359981 | None:intergenic | 30.0% |
| !! | GGTTTTGATAGGAAAATAAG+TGG | - | chr4.3:21359962-21359981 | MS.gene40099:CDS | 30.0% |
| !! | TTGATGATTTTGCAGAAAAG+TGG | - | chr4.3:21359776-21359795 | MS.gene40099:CDS | 30.0% |
| !! | TTTGTTTTCAAAAGAGAACG+TGG | - | chr4.3:21360345-21360364 | MS.gene40099:CDS | 30.0% |
| AAATGTTTGTCAAAGATGCG+TGG | - | chr4.3:21360667-21360686 | MS.gene40099:intron | 35.0% | |
| AAGAGCAGCATAATTGTGAT+TGG | - | chr4.3:21359278-21359297 | MS.gene40099:CDS | 35.0% | |
| AAGGAGATTATCAGAACGAA+GGG | + | chr4.3:21359044-21359063 | None:intergenic | 35.0% | |
| AGAAAAGATCAGAGTCAAGA+TGG | - | chr4.3:21360879-21360898 | MS.gene40099:CDS | 35.0% | |
| AGAAGTTGTTGATGCTAACA+AGG | - | chr4.3:21360495-21360514 | MS.gene40099:CDS | 35.0% | |
| AGTTGTTAAATCTGGACAAG+GGG | - | chr4.3:21359934-21359953 | MS.gene40099:CDS | 35.0% | |
| ATACAGAGCAGAATGAAGAA+GGG | + | chr4.3:21359530-21359549 | None:intergenic | 35.0% | |
| ATCCTTCAACTCCTTCTTAA+TGG | + | chr4.3:21360236-21360255 | None:intergenic | 35.0% | |
| CAAGTTGTTAAATCTGGACA+AGG | - | chr4.3:21359932-21359951 | MS.gene40099:CDS | 35.0% | |
| CAGAATGTATGATCTTGAGA+CGG | - | chr4.3:21360840-21360859 | MS.gene40099:CDS | 35.0% | |
| CATAACTCCTGAATAACTTG+AGG | + | chr4.3:21359368-21359387 | None:intergenic | 35.0% | |
| GAAAAGATCAGAGTCAAGAT+GGG | - | chr4.3:21360880-21360899 | MS.gene40099:CDS | 35.0% | |
| GAAAGTCAATGCCATTAAGA+AGG | - | chr4.3:21360222-21360241 | MS.gene40099:intron | 35.0% | |
| GATCTTAGGGACTAAATTGA+CGG | + | chr4.3:21359578-21359597 | None:intergenic | 35.0% | |
| GGAGGAATTGAATACATTTG+AGG | - | chr4.3:21360561-21360580 | MS.gene40099:intron | 35.0% | |
| GTCTCTGGTATTAAGATCTT+AGG | + | chr4.3:21359592-21359611 | None:intergenic | 35.0% | |
| TACTTCAAACAGATGTTGTG+TGG | + | chr4.3:21359855-21359874 | None:intergenic | 35.0% | |
| TAGACGTCTTTCTGATATGA+TGG | - | chr4.3:21360270-21360289 | MS.gene40099:intron | 35.0% | |
| TATATCTATTCCAAGGAACG+TGG | - | chr4.3:21360417-21360436 | MS.gene40099:CDS | 35.0% | |
| TGAGACGGAAATATCATTGA+TGG | - | chr4.3:21360855-21360874 | MS.gene40099:CDS | 35.0% | |
| TGGATTTAGGAAATTGAGCA+GGG | + | chr4.3:21358970-21358989 | None:intergenic | 35.0% | |
| ! | AATTGAATACATTTGAGGCG+TGG | - | chr4.3:21360566-21360585 | MS.gene40099:intron | 35.0% |
| ! | GATGATTTTGCAGAAAAGTG+GGG | - | chr4.3:21359778-21359797 | MS.gene40099:CDS | 35.0% |
| !! | AATAAGTGGTTTGTTCAAGC+AGG | - | chr4.3:21359976-21359995 | MS.gene40099:CDS | 35.0% |
| !! | TGCTAAAGGGTGTCAAAAAA+TGG | - | chr4.3:21360177-21360196 | MS.gene40099:intron | 35.0% |
| AAATTGAGCAGGGGAGAATT+TGG | + | chr4.3:21358960-21358979 | None:intergenic | 40.0% | |
| AACAGAAAGCTATGGAAGCA+CGG | - | chr4.3:21360527-21360546 | MS.gene40099:CDS | 40.0% | |
| ACAGAGACTAACATTTCGTC+TGG | - | chr4.3:21360025-21360044 | MS.gene40099:intron | 40.0% | |
| AGCAATGTATGCCCTTAGTA+TGG | - | chr4.3:21360714-21360733 | MS.gene40099:CDS | 40.0% | |
| AGGCTATCTCTGTTGGAAAA+CGG | - | chr4.3:21359996-21360015 | MS.gene40099:CDS | 40.0% | |
| AGTTGAGGGACTAAATTGCA+GGG | - | chr4.3:21359662-21359681 | MS.gene40099:CDS | 40.0% | |
| AGTTGTTGATGCTAACAAGG+AGG | - | chr4.3:21360498-21360517 | MS.gene40099:CDS | 40.0% | |
| CAGAGACTAACATTTCGTCT+GGG | - | chr4.3:21360026-21360045 | MS.gene40099:intron | 40.0% | |
| CATACAGAGCAGAATGAAGA+AGG | + | chr4.3:21359531-21359550 | None:intergenic | 40.0% | |
| GAAGGAGATTATCAGAACGA+AGG | + | chr4.3:21359045-21359064 | None:intergenic | 40.0% | |
| GAATGCACTAGTGTACAATG+TGG | - | chr4.3:21360462-21360481 | MS.gene40099:CDS | 40.0% | |
| GCAATGTATGCCCTTAGTAT+GGG | - | chr4.3:21360715-21360734 | MS.gene40099:CDS | 40.0% | |
| GGATAGACAACAGAAAGCTA+TGG | - | chr4.3:21360519-21360538 | MS.gene40099:CDS | 40.0% | |
| GGATTTAGGAAATTGAGCAG+GGG | + | chr4.3:21358969-21358988 | None:intergenic | 40.0% | |
| GGTGTTAAAAGAGAGTCGAT+GGG | + | chr4.3:21359002-21359021 | None:intergenic | 40.0% | |
| GTGGATTTAGGAAATTGAGC+AGG | + | chr4.3:21358971-21358990 | None:intergenic | 40.0% | |
| GTGTTAAAAGAGAGTCGATG+GGG | + | chr4.3:21359001-21359020 | None:intergenic | 40.0% | |
| GTGTTAGAGAAGTCACTGAT+TGG | - | chr4.3:21359474-21359493 | MS.gene40099:CDS | 40.0% | |
| TGCCATTAAGAAGGAGTTGA+AGG | - | chr4.3:21360231-21360250 | MS.gene40099:intron | 40.0% | |
| TTGACCTTCTCCAAGAACAA+GGG | + | chr4.3:21359894-21359913 | None:intergenic | 40.0% | |
| TTTCTTACTGTCAGCTGAAG+AGG | + | chr4.3:21359116-21359135 | None:intergenic | 40.0% | |
| TTTGACCTTCTCCAAGAACA+AGG | + | chr4.3:21359895-21359914 | None:intergenic | 40.0% | |
| ! | AAGCGTTCAGAGTCTTCTTT+TGG | - | chr4.3:21360091-21360110 | MS.gene40099:intron | 40.0% |
| ! | AAGGATTAGAGCTTCTGAGA+TGG | - | chr4.3:21360642-21360661 | MS.gene40099:intron | 40.0% |
| ! | AGGGTGCATTTGGGAATTTT+GGG | + | chr4.3:21359025-21359044 | None:intergenic | 40.0% |
| ! | TGTCAGCTGAAGAGGTTTTA+AGG | + | chr4.3:21359108-21359127 | None:intergenic | 40.0% |
| ! | TTGGAAACGATGACGTTTTG+AGG | + | chr4.3:21359067-21359086 | None:intergenic | 40.0% |
| !! | AAGGGTGCATTTGGGAATTT+TGG | + | chr4.3:21359026-21359045 | None:intergenic | 40.0% |
| !! | ATGCTAGGGTGTTGGTAATT+GGG | - | chr4.3:21360116-21360135 | MS.gene40099:intron | 40.0% |
| !!! | AAACGATGACGTTTTGAGGA+AGG | + | chr4.3:21359063-21359082 | None:intergenic | 40.0% |
| !!! | AGTCTTCTTTTGGTGATGCT+AGG | - | chr4.3:21360101-21360120 | MS.gene40099:intron | 40.0% |
| !!! | GTCTTCTTTTGGTGATGCTA+GGG | - | chr4.3:21360102-21360121 | MS.gene40099:intron | 40.0% |
| CAGTTGAGGGACTAAATTGC+AGG | - | chr4.3:21359661-21359680 | MS.gene40099:CDS | 45.0% | |
| GACTAACATTTCGTCTGGGT+CGG | - | chr4.3:21360030-21360049 | MS.gene40099:intron | 45.0% | |
| GATCAGAGTCAAGATGGGAA+AGG | - | chr4.3:21360885-21360904 | MS.gene40099:CDS | 45.0% | |
| GGCTATCTCTGTTGGAAAAC+GGG | - | chr4.3:21359997-21360016 | MS.gene40099:CDS | 45.0% | |
| GGGTGTTAAAAGAGAGTCGA+TGG | + | chr4.3:21359003-21359022 | None:intergenic | 45.0% | |
| TAAAAGAGAGTCGATGGGGA+GGG | + | chr4.3:21358997-21359016 | None:intergenic | 45.0% | |
| TCAGTGGCCTCAAGTTATTC+AGG | - | chr4.3:21359358-21359377 | MS.gene40099:CDS | 45.0% | |
| TTAAAAGAGAGTCGATGGGG+AGG | + | chr4.3:21358998-21359017 | None:intergenic | 45.0% | |
| TTAAGGATCTCGAGAGGAGA+AGG | + | chr4.3:21359091-21359110 | None:intergenic | 45.0% | |
| TTCAAGCAGGCTATCTCTGT+TGG | - | chr4.3:21359989-21360008 | MS.gene40099:CDS | 45.0% | |
| TTCTGTTAGTTCAGCTGCTG+TGG | - | chr4.3:21360054-21360073 | MS.gene40099:intron | 45.0% | |
| TTGCAATTCCAGAAGCTCAG+TGG | - | chr4.3:21359342-21359361 | MS.gene40099:CDS | 45.0% | |
| ! | ACAGAAAGCTATGGAAGCAC+GGG | - | chr4.3:21360528-21360547 | MS.gene40099:CDS | 45.0% |
| ! | AGTCACTGATTGGATCTCCA+AGG | - | chr4.3:21359484-21359503 | MS.gene40099:CDS | 45.0% |
| ! | ATCAGAACGAAGGGTGCATT+TGG | + | chr4.3:21359035-21359054 | None:intergenic | 45.0% |
| ! | CATCTGTTTGAAGTAGCTGC+TGG | - | chr4.3:21359860-21359879 | MS.gene40099:CDS | 45.0% |
| ! | GGGTGCATTTGGGAATTTTG+GGG | + | chr4.3:21359024-21359043 | None:intergenic | 45.0% |
| ! | GGTGCATTTGGGAATTTTGG+GGG | + | chr4.3:21359023-21359042 | None:intergenic | 45.0% |
| ! | TATGATGGAATGTGCTGCTG+AGG | - | chr4.3:21360285-21360304 | MS.gene40099:intron | 45.0% |
| ! | TCAGAACGAAGGGTGCATTT+GGG | + | chr4.3:21359034-21359053 | None:intergenic | 45.0% |
| !! | GATGCTAGGGTGTTGGTAAT+TGG | - | chr4.3:21360115-21360134 | MS.gene40099:intron | 45.0% |
| !! | TGAGAGCACGCATGTTTTCA+AGG | + | chr4.3:21360819-21360838 | None:intergenic | 45.0% |
| !! | TGCTAGGGTGTTGGTAATTG+GGG | - | chr4.3:21360117-21360136 | MS.gene40099:intron | 45.0% |
| !!! | GAGGTTTTAAGGATCTCGAG+AGG | + | chr4.3:21359097-21359116 | None:intergenic | 45.0% |
| !!! | TTTTGGTGATGCTAGGGTGT+TGG | - | chr4.3:21360108-21360127 | MS.gene40099:intron | 45.0% |
| AGCACGGGGAATTATTCAGG+AGG | - | chr4.3:21360543-21360562 | MS.gene40099:intron | 50.0% | |
| AGTTTCTCGCGCATCTCAAC+AGG | + | chr4.3:21359323-21359342 | None:intergenic | 50.0% | |
| ATGGTCCTATGCAGCATCTG+AGG | - | chr4.3:21360758-21360777 | MS.gene40099:CDS | 50.0% | |
| ATTCCAAGGAACGTGGATCC+AGG | - | chr4.3:21360424-21360443 | MS.gene40099:CDS | 50.0% | |
| ATTCTTCCTCCTGTTGGCCA+AGG | - | chr4.3:21360370-21360389 | MS.gene40099:CDS | 50.0% | |
| CAGAGCAGAATGAAGAAGGG+TGG | + | chr4.3:21359527-21359546 | None:intergenic | 50.0% | |
| CAGTGACTTCTCTAACACCG+CGG | + | chr4.3:21359472-21359491 | None:intergenic | 50.0% | |
| GACTCCCTTGTTCTTGGAGA+AGG | - | chr4.3:21359887-21359906 | MS.gene40099:CDS | 50.0% | |
| GAGGCTGATGTGATCTTCAC+TGG | - | chr4.3:21360304-21360323 | MS.gene40099:intron | 50.0% | |
| GATCTCGAGAGGAGAAGGTT+TGG | + | chr4.3:21359086-21359105 | None:intergenic | 50.0% | |
| GGTCTTGACTCCCTTGTTCT+TGG | - | chr4.3:21359881-21359900 | MS.gene40099:CDS | 50.0% | |
| GTGGAGATTCTTCCTCCTGT+TGG | - | chr4.3:21360364-21360383 | MS.gene40099:CDS | 50.0% | |
| TAGTTCAGCTGCTGTGGAGT+TGG | - | chr4.3:21360060-21360079 | MS.gene40099:intron | 50.0% | |
| TCACACCTCAGATGCTGCAT+AGG | + | chr4.3:21360766-21360785 | None:intergenic | 50.0% | |
| TGGGGAGGGAATGTGGATTT+AGG | + | chr4.3:21358983-21359002 | None:intergenic | 50.0% | |
| TTGAGCAGGGGAGAATTTGG+CGG | + | chr4.3:21358957-21358976 | None:intergenic | 50.0% | |
| TTGGCCAAGGTGTGAGAAGA+CGG | - | chr4.3:21360383-21360402 | MS.gene40099:CDS | 50.0% | |
| ! | ATGCAGCATCTGAGGTGTGA+TGG | - | chr4.3:21360766-21360785 | MS.gene40099:CDS | 50.0% |
| ! | CAGAAAGCTATGGAAGCACG+GGG | - | chr4.3:21360529-21360548 | MS.gene40099:CDS | 50.0% |
| ! | GGAAGCACGGGGAATTATTC+AGG | - | chr4.3:21360540-21360559 | MS.gene40099:CDS | 50.0% |
| ! | TGCAGCATCTGAGGTGTGAT+GGG | - | chr4.3:21360767-21360786 | MS.gene40099:CDS | 50.0% |
| !! | TAGGGTGTTGGTAATTGGGG+CGG | - | chr4.3:21360120-21360139 | MS.gene40099:intron | 50.0% |
| !!! | AAGGGGTGCCAGGTTTTGAT+AGG | - | chr4.3:21359951-21359970 | MS.gene40099:CDS | 50.0% |
| ACTTGAGGCCACTGAGCTTC+TGG | + | chr4.3:21359353-21359372 | None:intergenic | 55.0% | |
| AGAGCCGTCTTCTCACACCT+TGG | + | chr4.3:21360390-21360409 | None:intergenic | 55.0% | |
| CTTCTCACACCTTGGCCAAC+AGG | + | chr4.3:21360382-21360401 | None:intergenic | 55.0% | |
| GTAATTGGGGCGGGGAAGAT+GGG | - | chr4.3:21360130-21360149 | MS.gene40099:intron | 55.0% | |
| TAATTGGGGCGGGGAAGATG+GGG | - | chr4.3:21360131-21360150 | MS.gene40099:intron | 55.0% | |
| TTCTCAAGTTCCGACACGCC+TGG | + | chr4.3:21360445-21360464 | None:intergenic | 55.0% | |
| ! | AACACCGCGGTGTTGAGAGA+GGG | + | chr4.3:21359459-21359478 | None:intergenic | 55.0% |
| ! | GGTGTTGAGAGAGGGCAACA+AGG | + | chr4.3:21359451-21359470 | None:intergenic | 55.0% |
| ! | TAACACCGCGGTGTTGAGAG+AGG | + | chr4.3:21359460-21359479 | None:intergenic | 55.0% |
| !! | AAATCTGGACAAGGGGTGCC+AGG | - | chr4.3:21359941-21359960 | MS.gene40099:CDS | 55.0% |
| !! | AGGGTGTTGGTAATTGGGGC+GGG | - | chr4.3:21360121-21360140 | MS.gene40099:intron | 55.0% |
| ACGCCTGGATCCACGTTCCT+TGG | + | chr4.3:21360430-21360449 | None:intergenic | 60.0% | |
| AGCAGGGGAGAATTTGGCGG+AGG | + | chr4.3:21358954-21358973 | None:intergenic | 60.0% | |
| CTCACACCTTGGCCAACAGG+AGG | + | chr4.3:21360379-21360398 | None:intergenic | 60.0% | |
| GAACGTGGATCCAGGCGTGT+CGG | - | chr4.3:21360432-21360451 | MS.gene40099:CDS | 60.0% | |
| GAGTCGATGGGGAGGGAATG+TGG | + | chr4.3:21358990-21359009 | None:intergenic | 60.0% | |
| GGTAATTGGGGCGGGGAAGA+TGG | - | chr4.3:21360129-21360148 | MS.gene40099:intron | 60.0% | |
| GTTGCCCTCTCTCAACACCG+CGG | - | chr4.3:21359452-21359471 | MS.gene40099:CDS | 60.0% | |
| TTTGGCGGAGGAGCGAAGAG+TGG | + | chr4.3:21358942-21358961 | None:intergenic | 60.0% | |
| ! | GATGCGTGGTGACGTCTCGA+AGG | - | chr4.3:21360681-21360700 | MS.gene40099:intron | 60.0% |
| !! | GGGTGTTGGTAATTGGGGCG+GGG | - | chr4.3:21360122-21360141 | MS.gene40099:intron | 60.0% |
| GCGAAGAGTGGCGGTGGAGG+AGG | + | chr4.3:21358930-21358949 | None:intergenic | 70.0% | |
| GGAGCGAAGAGTGGCGGTGG+AGG | + | chr4.3:21358933-21358952 | None:intergenic | 70.0% | |
| GGAGGAGCGAAGAGTGGCGG+TGG | + | chr4.3:21358936-21358955 | None:intergenic | 70.0% | |
| GGCGGAGGAGCGAAGAGTGG+CGG | + | chr4.3:21358939-21358958 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 21358905 | 21360918 | 21358905 | ID=MS.gene40099 |
| chr4.3 | mRNA | 21358905 | 21360918 | 21358905 | ID=MS.gene40099.t1;Parent=MS.gene40099 |
| chr4.3 | exon | 21360696 | 21360918 | 21360696 | ID=MS.gene40099.t1.exon1;Parent=MS.gene40099.t1 |
| chr4.3 | CDS | 21360696 | 21360918 | 21360696 | ID=cds.MS.gene40099.t1;Parent=MS.gene40099.t1 |
| chr4.3 | exon | 21360318 | 21360559 | 21360318 | ID=MS.gene40099.t1.exon2;Parent=MS.gene40099.t1 |
| chr4.3 | CDS | 21360318 | 21360559 | 21360318 | ID=cds.MS.gene40099.t1;Parent=MS.gene40099.t1 |
| chr4.3 | exon | 21358905 | 21360032 | 21358905 | ID=MS.gene40099.t1.exon3;Parent=MS.gene40099.t1 |
| chr4.3 | CDS | 21358905 | 21360032 | 21358905 | ID=cds.MS.gene40099.t1;Parent=MS.gene40099.t1 |
| Gene Sequence |
| Protein sequence |
