Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40334.t1 | XP_013461942.1 | 99.1 | 327 | 3 | 0 | 4 | 330 | 15 | 341 | 4.20E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40334.t1 | O81062 | 84.1 | 321 | 51 | 0 | 1 | 321 | 12 | 332 | 6.6e-155 | 548.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40334.t1 | A0A072V2B2 | 99.1 | 327 | 3 | 0 | 4 | 330 | 15 | 341 | 3.0e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050864 | MS.gene40334 | 0.800911 | 1.15E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40334.t1 | MTR_3g109932 | 99.083 | 327 | 3 | 0 | 4 | 330 | 15 | 341 | 0.0 | 659 |
| MS.gene40334.t1 | MTR_3g109932 | 98.675 | 302 | 4 | 0 | 3 | 304 | 14 | 315 | 0.0 | 606 |
| MS.gene40334.t1 | MTR_1g008280 | 90.373 | 322 | 30 | 1 | 10 | 330 | 21 | 342 | 0.0 | 566 |
| MS.gene40334.t1 | MTR_1g008280 | 87.915 | 331 | 30 | 2 | 10 | 330 | 21 | 351 | 0.0 | 558 |
| MS.gene40334.t1 | MTR_1g008280 | 90.706 | 269 | 25 | 0 | 10 | 278 | 21 | 289 | 1.78e-169 | 473 |
| MS.gene40334.t1 | MTR_3g109932 | 99.130 | 230 | 2 | 0 | 4 | 233 | 15 | 244 | 1.10e-166 | 464 |
| MS.gene40334.t1 | MTR_3g109968 | 98.507 | 134 | 2 | 0 | 197 | 330 | 1 | 134 | 3.01e-91 | 268 |
| MS.gene40334.t1 | MTR_1g100980 | 29.290 | 338 | 177 | 7 | 33 | 319 | 42 | 368 | 8.83e-30 | 117 |
| MS.gene40334.t1 | MTR_6g463340 | 30.928 | 291 | 167 | 12 | 43 | 312 | 141 | 418 | 1.13e-25 | 106 |
| MS.gene40334.t1 | MTR_6g463340 | 30.928 | 291 | 167 | 12 | 43 | 312 | 249 | 526 | 2.32e-25 | 106 |
| MS.gene40334.t1 | MTR_5g031710 | 90.566 | 53 | 5 | 0 | 181 | 233 | 48 | 100 | 4.57e-25 | 98.2 |
| MS.gene40334.t1 | MTR_1g116953 | 35.644 | 202 | 104 | 8 | 143 | 324 | 327 | 522 | 1.13e-23 | 101 |
| MS.gene40334.t1 | MTR_7g405780 | 35.176 | 199 | 107 | 9 | 143 | 320 | 342 | 539 | 1.91e-23 | 101 |
| MS.gene40334.t1 | MTR_7g077800 | 30.741 | 270 | 151 | 12 | 44 | 290 | 106 | 362 | 2.83e-23 | 99.8 |
| MS.gene40334.t1 | MTR_7g077800 | 30.175 | 285 | 163 | 12 | 44 | 305 | 244 | 515 | 5.96e-23 | 99.8 |
| MS.gene40334.t1 | MTR_8g030680 | 28.247 | 308 | 185 | 10 | 44 | 328 | 161 | 455 | 4.88e-21 | 93.6 |
| MS.gene40334.t1 | MTR_7g405780 | 36.145 | 166 | 88 | 6 | 143 | 290 | 342 | 507 | 5.33e-21 | 94.0 |
| MS.gene40334.t1 | MTR_8g030680 | 28.247 | 308 | 185 | 10 | 44 | 328 | 247 | 541 | 6.58e-21 | 93.6 |
| MS.gene40334.t1 | MTR_7g077800 | 29.091 | 220 | 123 | 10 | 44 | 243 | 244 | 450 | 1.02e-13 | 72.0 |
| MS.gene40334.t1 | MTR_7g405780 | 34.783 | 115 | 60 | 4 | 143 | 242 | 342 | 456 | 1.22e-12 | 68.6 |
| MS.gene40334.t1 | MTR_7g405780 | 34.821 | 112 | 58 | 4 | 143 | 239 | 342 | 453 | 1.08e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40334.t1 | AT2G03120 | 82.927 | 328 | 54 | 1 | 1 | 328 | 12 | 337 | 0.0 | 540 |
| MS.gene40334.t1 | AT4G33410 | 28.443 | 334 | 167 | 8 | 18 | 290 | 17 | 339 | 2.60e-26 | 107 |
| MS.gene40334.t1 | AT1G63690 | 35.882 | 170 | 91 | 6 | 139 | 290 | 334 | 503 | 1.28e-22 | 99.0 |
| MS.gene40334.t1 | AT1G63690 | 35.294 | 170 | 92 | 6 | 139 | 290 | 334 | 503 | 4.58e-22 | 97.1 |
| MS.gene40334.t1 | AT1G01650 | 32.105 | 190 | 110 | 6 | 140 | 310 | 194 | 383 | 6.05e-21 | 93.2 |
| MS.gene40334.t1 | AT1G01650 | 32.105 | 190 | 110 | 6 | 140 | 310 | 194 | 383 | 6.05e-21 | 93.2 |
| MS.gene40334.t1 | AT1G01650 | 32.105 | 190 | 110 | 6 | 140 | 310 | 194 | 383 | 6.05e-21 | 93.2 |
| MS.gene40334.t1 | AT1G01650 | 32.105 | 190 | 110 | 6 | 140 | 310 | 336 | 525 | 6.94e-21 | 93.6 |
| MS.gene40334.t1 | AT2G43070 | 29.181 | 281 | 164 | 9 | 63 | 320 | 326 | 594 | 3.46e-20 | 91.7 |
| MS.gene40334.t1 | AT2G43070 | 29.181 | 281 | 164 | 9 | 63 | 320 | 332 | 600 | 3.79e-20 | 91.7 |
| MS.gene40334.t1 | AT2G43070 | 29.181 | 281 | 164 | 9 | 63 | 320 | 273 | 541 | 4.66e-20 | 91.3 |
| MS.gene40334.t1 | AT2G43070 | 29.181 | 281 | 164 | 9 | 63 | 320 | 267 | 535 | 5.06e-20 | 91.3 |
| MS.gene40334.t1 | AT1G05820 | 32.161 | 199 | 113 | 8 | 143 | 321 | 197 | 393 | 1.01e-19 | 89.4 |
| MS.gene40334.t1 | AT1G05820 | 36.471 | 170 | 86 | 8 | 143 | 292 | 337 | 504 | 1.07e-19 | 90.1 |
| MS.gene40334.t1 | AT1G05820 | 32.161 | 199 | 113 | 8 | 143 | 321 | 337 | 533 | 1.66e-19 | 89.7 |
Find 56 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTTGATGCACCAATTA+AGG | 0.169404 | 3.4:+94734833 | MS.gene40334:CDS |
| TATATTGTACCTGCGGTAAT+TGG | 0.229404 | 3.4:+94737290 | MS.gene40334:CDS |
| TGTTGTGATGAACTGGTTTC+AGG | 0.231809 | 3.4:+94737068 | MS.gene40334:CDS |
| GCTATTTAAGTTTCTATCTA+AGG | 0.241091 | 3.4:+94733538 | MS.gene40334:CDS |
| AAAATGCACTCTTGAAATAC+TGG | 0.260070 | 3.4:-94737014 | None:intergenic |
| TGTCACATACATCGAAAATA+TGG | 0.289325 | 3.4:-94733789 | None:intergenic |
| GTTAAAACAACATTTAAGTT+TGG | 0.310254 | 3.4:-94733255 | None:intergenic |
| AGATCATCATTCCAATGATT+TGG | 0.337619 | 3.4:-94733750 | None:intergenic |
| AACGCTTTCTGCCAAATCAT+TGG | 0.337952 | 3.4:+94733739 | MS.gene40334:CDS |
| GGCAGAAAGCGTTTAATAGA+TGG | 0.350547 | 3.4:-94733729 | None:intergenic |
| TTGGCTGGCAAATAACATAT+TGG | 0.355338 | 3.4:+94734006 | MS.gene40334:CDS |
| CCAAGTCCAAGCATTGAAAA+TGG | 0.367027 | 3.4:-94735033 | None:intergenic |
| TGCTCTGCGCAAGCATTGGC+TGG | 0.369363 | 3.4:+94733991 | MS.gene40334:CDS |
| CTGGAATGGTGAAGTTAAAC+AGG | 0.372693 | 3.4:+94737334 | MS.gene40334:CDS |
| ATGCTTGCGCAGAGCATACC+AGG | 0.396831 | 3.4:-94733984 | None:intergenic |
| GGGTCTTGCTTTCTGCATCC+AGG | 0.398103 | 3.4:+94734027 | MS.gene40334:CDS |
| TCTCTTGGCTCCTTCAAGAC+TGG | 0.403236 | 3.4:+94734645 | MS.gene40334:CDS |
| TTACAATTGTTGTGATGAAC+TGG | 0.407335 | 3.4:+94737061 | MS.gene40334:CDS |
| CGTTGGTGCAGTTGGTTTGA+CGG | 0.413210 | 3.4:-94733313 | None:intergenic |
| CAAGACTGGTGCCATTCTCT+TGG | 0.418444 | 3.4:+94734659 | MS.gene40334:CDS |
| TGATGCCAAGTCTAGCAAAA+AGG | 0.420156 | 3.4:+94737924 | MS.gene40334:CDS |
| GGAATTGAAATGCTTTCTCT+TGG | 0.423273 | 3.4:+94734630 | MS.gene40334:CDS |
| GGTATGCTCTGCGCAAGCAT+TGG | 0.428819 | 3.4:+94733987 | MS.gene40334:CDS |
| TGGCTGGCAAATAACATATT+GGG | 0.442504 | 3.4:+94734007 | MS.gene40334:CDS |
| GTGCAGTTGGTTTGACGGAT+CGG | 0.468327 | 3.4:-94733308 | None:intergenic |
| GAGAATGGCACCAGTCTTGA+AGG | 0.470820 | 3.4:-94734655 | None:intergenic |
| CCGTCGAGATTGAGTTTACA+AGG | 0.477957 | 3.4:+94733921 | MS.gene40334:CDS |
| CAGATCGTTGCTGCAGTCCC+TGG | 0.479847 | 3.4:+94733947 | MS.gene40334:CDS |
| AGCATTGCACTTCCAACAAA+GGG | 0.481693 | 3.4:-94733500 | None:intergenic |
| ACTCTCTTCTTGAGATGAAT+CGG | 0.482413 | 3.4:-94737902 | None:intergenic |
| ACAGGCTACTTCTTTGTACT+CGG | 0.505091 | 3.4:+94733581 | MS.gene40334:CDS |
| GCTTGCATCACTGTGTTTGT+CGG | 0.510711 | 3.4:+94733279 | MS.gene40334:CDS |
| TTAGTGAACACTGTGTTGAC+AGG | 0.514738 | 3.4:+94733563 | MS.gene40334:CDS |
| GGAATGATGATCTCATAGTC+TGG | 0.516052 | 3.4:+94733760 | MS.gene40334:CDS |
| CTTCACCATTCCAGATGCAA+TGG | 0.516632 | 3.4:-94737325 | None:intergenic |
| GTACTTACCGTTGGTGCAGT+TGG | 0.522180 | 3.4:-94733321 | None:intergenic |
| AAAACGCATAGCATGTTCCT+TGG | 0.531310 | 3.4:-94733477 | None:intergenic |
| CTTGGTGATATTGTTATCCC+AGG | 0.535420 | 3.4:+94735051 | MS.gene40334:CDS |
| TTTGACAACAAGCGGTGCTA+AGG | 0.535421 | 3.4:-94733226 | None:intergenic |
| TTTGCAACGCTGACCATCAC+AGG | 0.536507 | 3.4:-94734810 | None:intergenic |
| GAACTGGTTTCAGGCTGCAC+AGG | 0.544980 | 3.4:+94737077 | MS.gene40334:CDS |
| TTCACCATTCCAGATGCAAT+GGG | 0.551965 | 3.4:-94737324 | None:intergenic |
| GGATCTACTTTGACAACAAG+CGG | 0.559911 | 3.4:-94733234 | None:intergenic |
| GGCCTTGCAGAATCTGCTGT+GGG | 0.560098 | 3.4:-94735012 | None:intergenic |
| CGTCAAACCAACTGCACCAA+CGG | 0.561582 | 3.4:+94733314 | MS.gene40334:CDS |
| TAGCATTGCACTTCCAACAA+AGG | 0.562776 | 3.4:-94733501 | None:intergenic |
| GCGGCCCATTGCATCTGGAA+TGG | 0.576051 | 3.4:+94737320 | MS.gene40334:CDS |
| AAATGCACTCTTGAAATACT+GGG | 0.576806 | 3.4:-94737013 | None:intergenic |
| GGTACAATATACAAAAGAGC+AGG | 0.585695 | 3.4:-94737278 | None:intergenic |
| TCCCCACAGCAGATTCTGCA+AGG | 0.595992 | 3.4:+94735010 | MS.gene40334:CDS |
| TTGCGGTTTGATGTGTCTAG+AGG | 0.601003 | 3.4:+94736982 | MS.gene40334:CDS |
| TGGCCTTGCAGAATCTGCTG+TGG | 0.613278 | 3.4:-94735013 | None:intergenic |
| TATGCAGGAGACAATGTCCA+AGG | 0.637852 | 3.4:+94733460 | MS.gene40334:intron |
| CCTTGTAAACTCAATCTCGA+CGG | 0.651095 | 3.4:-94733921 | None:intergenic |
| GACAAACACAGTGATGCAAG+CGG | 0.680075 | 3.4:-94733277 | None:intergenic |
| GCCTTGCAGAATCTGCTGTG+GGG | 0.709703 | 3.4:-94735011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTTAAAAACTTATAAAA+GGG | - | chr3.4:94735555-94735574 | None:intergenic | 10.0% |
| !! | GTAAATAAGTTAAAATTATT+TGG | - | chr3.4:94735211-94735230 | None:intergenic | 10.0% |
| !!! | AGTTAATATTTTTTTAGTTA+CGG | - | chr3.4:94736639-94736658 | None:intergenic | 10.0% |
| !!! | TTAAATTTTTTTTTTCGTTT+GGG | + | chr3.4:94737128-94737147 | MS.gene40334:intron | 10.0% |
| !!! | TTTAAATTTTTTTTTTCGTT+TGG | + | chr3.4:94737127-94737146 | MS.gene40334:intron | 10.0% |
| !! | AAAAATAATAAATGTTGCAT+TGG | - | chr3.4:94736350-94736369 | None:intergenic | 15.0% |
| !! | AATAGGTTATTATGTATAAT+TGG | - | chr3.4:94734235-94734254 | None:intergenic | 15.0% |
| !! | ATAAATTATCTACAATCAAT+TGG | + | chr3.4:94736897-94736916 | MS.gene40334:intron | 15.0% |
| !! | ATACTAATTGAAAAAGAATA+AGG | + | chr3.4:94735352-94735371 | MS.gene40334:intron | 15.0% |
| !! | CACAAAACATAATTAATTAT+TGG | - | chr3.4:94734409-94734428 | None:intergenic | 15.0% |
| !! | GAAGTTTAAAAACTTATAAA+AGG | - | chr3.4:94735556-94735575 | None:intergenic | 15.0% |
| !! | GAATGAAATTCATTAAATAA+GGG | - | chr3.4:94736386-94736405 | None:intergenic | 15.0% |
| !! | GATAATTTATTGAAGATAAA+TGG | - | chr3.4:94736887-94736906 | None:intergenic | 15.0% |
| !! | TACTAATTGAAAAAGAATAA+GGG | + | chr3.4:94735353-94735372 | MS.gene40334:intron | 15.0% |
| !! | TATACATAATAACCTATTAT+AGG | + | chr3.4:94734237-94734256 | MS.gene40334:intron | 15.0% |
| !! | TATTCATTATGAAAAAAGTA+GGG | - | chr3.4:94735925-94735944 | None:intergenic | 15.0% |
| !! | TGAATGAAATTCATTAAATA+AGG | - | chr3.4:94736387-94736406 | None:intergenic | 15.0% |
| !! | TGCAATATATAAAAGAATAA+GGG | - | chr3.4:94733408-94733427 | None:intergenic | 15.0% |
| !! | TTAAATTATGGTATTTAACT+TGG | + | chr3.4:94734260-94734279 | MS.gene40334:intron | 15.0% |
| !! | TTATTCATTATGAAAAAAGT+AGG | - | chr3.4:94735926-94735945 | None:intergenic | 15.0% |
| !! | TTGCAATATATAAAAGAATA+AGG | - | chr3.4:94733409-94733428 | None:intergenic | 15.0% |
| !!! | AATAAGCTTAATTTCTAAAA+AGG | - | chr3.4:94734475-94734494 | None:intergenic | 15.0% |
| !!! | ATGATTTTATAGTTTTAAGT+TGG | + | chr3.4:94737763-94737782 | MS.gene40334:intron | 15.0% |
| !!! | ATTAATTATGTTGATTTCAA+TGG | - | chr3.4:94736470-94736489 | None:intergenic | 15.0% |
| !!! | GTTAATATTTTTTTAGTTAC+GGG | - | chr3.4:94736638-94736657 | None:intergenic | 15.0% |
| !!! | TAAATTTTTTTTTTCGTTTG+GGG | + | chr3.4:94737129-94737148 | MS.gene40334:intron | 15.0% |
| !!! | TTTAGTTCTTAGTATAAATT+TGG | + | chr3.4:94735135-94735154 | MS.gene40334:intron | 15.0% |
| !!! | TTTTTATCAAATAGTTATCA+TGG | - | chr3.4:94734938-94734957 | None:intergenic | 15.0% |
| !! | ACATATAGATTGTAGAATAT+GGG | + | chr3.4:94737615-94737634 | MS.gene40334:intron | 20.0% |
| !! | ACCATAATTTAACCTATAAT+AGG | - | chr3.4:94734252-94734271 | None:intergenic | 20.0% |
| !! | ACCTATTATAGGTTAAATTA+TGG | + | chr3.4:94734248-94734267 | MS.gene40334:intron | 20.0% |
| !! | ATATAAAACACGTCAAAAAA+AGG | - | chr3.4:94733663-94733682 | None:intergenic | 20.0% |
| !! | CAAATGTAAAGTTTCTTTAT+AGG | + | chr3.4:94735456-94735475 | MS.gene40334:intron | 20.0% |
| !! | TACATATAGATTGTAGAATA+TGG | + | chr3.4:94737614-94737633 | MS.gene40334:intron | 20.0% |
| !! | TTTAAATTCAACTTCACAAA+AGG | - | chr3.4:94735108-94735127 | None:intergenic | 20.0% |
| !!! | AAATTTTTTTTTTCGTTTGG+GGG | + | chr3.4:94737130-94737149 | MS.gene40334:intron | 20.0% |
| !!! | AATTTTGTATTGAATTATGC+AGG | + | chr3.4:94733445-94733464 | MS.gene40334:intron | 20.0% |
| !!! | ATTAAATAAGGGTATAGTAA+TGG | - | chr3.4:94736375-94736394 | None:intergenic | 20.0% |
| !!! | ATTTTAAGTCTTTGCTTAAA+TGG | + | chr3.4:94735958-94735977 | MS.gene40334:intron | 20.0% |
| !!! | GTTAAAACAACATTTAAGTT+TGG | - | chr3.4:94733258-94733277 | None:intergenic | 20.0% |
| !!! | TGTAAAGTGACAATTATTTT+GGG | - | chr3.4:94736324-94736343 | None:intergenic | 20.0% |
| !!! | TTATGTTTTGTGCATATTTT+TGG | + | chr3.4:94734417-94734436 | MS.gene40334:intron | 20.0% |
| !!! | TTATGTTTTTTGCTACTTTT+AGG | + | chr3.4:94733857-94733876 | MS.gene40334:intron | 20.0% |
| !!! | TTGTAAAGTGACAATTATTT+TGG | - | chr3.4:94736325-94736344 | None:intergenic | 20.0% |
| !!! | TTTTGTATATGACATTTTCT+GGG | + | chr3.4:94734776-94734795 | MS.gene40334:CDS | 20.0% |
| !!! | TTTTTGTATATGACATTTTC+TGG | + | chr3.4:94734775-94734794 | MS.gene40334:CDS | 20.0% |
| ! | AAAAAAACATACCAAGAGAA+TGG | - | chr3.4:94734673-94734692 | None:intergenic | 25.0% |
| ! | AACCAGATGCATAAAAAATA+TGG | - | chr3.4:94737410-94737429 | None:intergenic | 25.0% |
| ! | AATTGAAAAAGAATAAGGGA+AGG | + | chr3.4:94735357-94735376 | MS.gene40334:intron | 25.0% |
| ! | ACCAAGTTCAATTTAAAAGA+AGG | - | chr3.4:94734699-94734718 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATCTCATTGTT+TGG | - | chr3.4:94735585-94735604 | None:intergenic | 25.0% |
| ! | ATCAATTAATCATCCAAACA+GGG | - | chr3.4:94735416-94735435 | None:intergenic | 25.0% |
| ! | ATGCTTATAGTTAAATTGAC+AGG | + | chr3.4:94734103-94734122 | MS.gene40334:intron | 25.0% |
| ! | ATGTAACTGGCATAAATAAA+AGG | - | chr3.4:94734198-94734217 | None:intergenic | 25.0% |
| ! | ATTGAAAAAGAATAAGGGAA+GGG | + | chr3.4:94735358-94735377 | MS.gene40334:intron | 25.0% |
| ! | ATTTGATTCTCTAGATAATG+TGG | - | chr3.4:94735704-94735723 | None:intergenic | 25.0% |
| ! | CAGTTATATTGGATTCTTAT+TGG | + | chr3.4:94736225-94736244 | MS.gene40334:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr3.4:94736418-94736437 | MS.gene40334:intron | 25.0% |
| ! | CCATGAGTTAATAAAAGAAA+TGG | - | chr3.4:94734374-94734393 | None:intergenic | 25.0% |
| ! | CTCTAAATTATAGTCGTTTA+AGG | - | chr3.4:94736518-94736537 | None:intergenic | 25.0% |
| ! | GAAGAAATTGGTACTAATTT+AGG | - | chr3.4:94735811-94735830 | None:intergenic | 25.0% |
| ! | GCTTGTATTGAAATTTGAAA+GGG | + | chr3.4:94734328-94734347 | MS.gene40334:intron | 25.0% |
| ! | TAATAAAAGAAATGGTTGAC+AGG | - | chr3.4:94734366-94734385 | None:intergenic | 25.0% |
| ! | TATGACATAAACACTAAAGA+GGG | - | chr3.4:94736573-94736592 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr3.4:94736417-94736436 | MS.gene40334:intron | 25.0% |
| ! | TGCTTGTATTGAAATTTGAA+AGG | + | chr3.4:94734327-94734346 | MS.gene40334:intron | 25.0% |
| ! | TGTTTAATTCATTCATGCAT+TGG | + | chr3.4:94733832-94733851 | MS.gene40334:intron | 25.0% |
| ! | TTATGACATAAACACTAAAG+AGG | - | chr3.4:94736574-94736593 | None:intergenic | 25.0% |
| ! | TTATGCCAGTTACATAAATT+TGG | + | chr3.4:94734203-94734222 | MS.gene40334:intron | 25.0% |
| ! | TTGTTCCAAATTTATGTAAC+TGG | - | chr3.4:94734211-94734230 | None:intergenic | 25.0% |
| ! | TTTACACTACTCATAATACT+TGG | - | chr3.4:94737488-94737507 | None:intergenic | 25.0% |
| ! | TTTGATTCTCTAGATAATGT+GGG | - | chr3.4:94735703-94735722 | None:intergenic | 25.0% |
| ! | TTTGGTTAAATACCTTCTAA+AGG | + | chr3.4:94737639-94737658 | MS.gene40334:intron | 25.0% |
| !! | CCATTTCTTTTATTAACTCA+TGG | + | chr3.4:94734371-94734390 | MS.gene40334:intron | 25.0% |
| !! | GCTATTTAAGTTTCTATCTA+AGG | + | chr3.4:94733538-94733557 | MS.gene40334:CDS | 25.0% |
| !! | TAACGTTTTTCCCTTTTTAT+TGG | + | chr3.4:94737240-94737259 | MS.gene40334:intron | 25.0% |
| !! | TATAAACTGCAAATTAGCTT+TGG | - | chr3.4:94737524-94737543 | None:intergenic | 25.0% |
| !! | TCCTTCTTTTAAATTGAACT+TGG | + | chr3.4:94734695-94734714 | MS.gene40334:intron | 25.0% |
| !! | TTTACATTCACATATTTTGC+AGG | + | chr3.4:94734746-94734765 | MS.gene40334:intron | 25.0% |
| !!! | AAAAAAATGAGGGTTCTAAA+AGG | + | chr3.4:94735507-94735526 | MS.gene40334:intron | 25.0% |
| !!! | AAAAAATGAGGGTTCTAAAA+GGG | + | chr3.4:94735508-94735527 | MS.gene40334:intron | 25.0% |
| !!! | AGCTTTAAAAGTTTGTTCTT+TGG | - | chr3.4:94735646-94735665 | None:intergenic | 25.0% |
| !!! | AGTGCTTTAAAATGTACTTA+AGG | + | chr3.4:94737577-94737596 | MS.gene40334:intron | 25.0% |
| !!! | ATCCATATTTTTTATGCATC+TGG | + | chr3.4:94737405-94737424 | MS.gene40334:intron | 25.0% |
| !!! | ATTGCTAATTTGGCTTTATT+AGG | + | chr3.4:94733084-94733103 | MS.gene40334:intron | 25.0% |
| !!! | ATTTTTTAGACGTAGATCAA+TGG | - | chr3.4:94736810-94736829 | None:intergenic | 25.0% |
| !!! | GCAAAGATTTTAACCTTAAT+TGG | - | chr3.4:94734849-94734868 | None:intergenic | 25.0% |
| !!! | TAAATTTTTCAAACTGTGCT+GGG | + | chr3.4:94735161-94735180 | MS.gene40334:intron | 25.0% |
| !!! | TATTTCAAGAGTGCATTTTT+AGG | + | chr3.4:94737018-94737037 | MS.gene40334:CDS | 25.0% |
| !!! | TTAAATTTTTCAAACTGTGC+TGG | + | chr3.4:94735160-94735179 | MS.gene40334:intron | 25.0% |
| !!! | TTAAGTACATTTTAAAGCAC+TGG | - | chr3.4:94737578-94737597 | None:intergenic | 25.0% |
| !!! | TTTCCAATTAGGTATTTTTG+TGG | + | chr3.4:94736951-94736970 | MS.gene40334:intron | 25.0% |
| AAAAATAGACCCATAACCAA+AGG | + | chr3.4:94736824-94736843 | MS.gene40334:intron | 30.0% | |
| AAAATAGACCCATAACCAAA+GGG | + | chr3.4:94736825-94736844 | MS.gene40334:intron | 30.0% | |
| AAAATGCACTCTTGAAATAC+TGG | - | chr3.4:94737017-94737036 | None:intergenic | 30.0% | |
| AAATCTCATTGTTTGGACTT+TGG | - | chr3.4:94735578-94735597 | None:intergenic | 30.0% | |
| AAATGCACTCTTGAAATACT+GGG | - | chr3.4:94737016-94737035 | None:intergenic | 30.0% | |
| AAATTTGACAGCACTATTCA+AGG | + | chr3.4:94734287-94734306 | MS.gene40334:intron | 30.0% | |
| AACAAAACAGCTTATGTACA+TGG | - | chr3.4:94733350-94733369 | None:intergenic | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | - | chr3.4:94736285-94736304 | None:intergenic | 30.0% | |
| AAGCTTATTCTGTAGAAAAC+AGG | + | chr3.4:94734486-94734505 | MS.gene40334:intron | 30.0% | |
| ACAAAACAGCTTATGTACAT+GGG | - | chr3.4:94733349-94733368 | None:intergenic | 30.0% | |
| ACAAATGTTGCTGAAGTTAT+TGG | + | chr3.4:94737736-94737755 | MS.gene40334:intron | 30.0% | |
| ACAATCAATTGGTTGTTACT+TGG | + | chr3.4:94736908-94736927 | MS.gene40334:intron | 30.0% | |
| ACTAACACAAACACAGATAT+TGG | - | chr3.4:94735849-94735868 | None:intergenic | 30.0% | |
| ACTGTGAATTAACTAGTGAT+CGG | - | chr3.4:94732714-94732733 | None:intergenic | 30.0% | |
| AGATCATCATTCCAATGATT+TGG | - | chr3.4:94733753-94733772 | None:intergenic | 30.0% | |
| ATCATTTGATGCACCAATTA+AGG | + | chr3.4:94734833-94734852 | MS.gene40334:CDS | 30.0% | |
| ATGCCACAAAAATACCTAAT+TGG | - | chr3.4:94736957-94736976 | None:intergenic | 30.0% | |
| ATTGACATTGATATGAGAAC+AGG | - | chr3.4:94737387-94737406 | None:intergenic | 30.0% | |
| CATCAATTAATCATCCAAAC+AGG | - | chr3.4:94735417-94735436 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr3.4:94736421-94736440 | None:intergenic | 30.0% | |
| CTGTTTGGATGATTAATTGA+TGG | + | chr3.4:94735415-94735434 | MS.gene40334:intron | 30.0% | |
| CTTTCTATTAATGCAGTTGT+TGG | + | chr3.4:94737858-94737877 | MS.gene40334:intron | 30.0% | |
| GACTATAATTTAGAGACAGA+GGG | + | chr3.4:94736523-94736542 | MS.gene40334:intron | 30.0% | |
| GGAAAAATTATACTACACAC+CGG | - | chr3.4:94737448-94737467 | None:intergenic | 30.0% | |
| GTAAAAATGCCTGTTATAAC+CGG | + | chr3.4:94735312-94735331 | MS.gene40334:intron | 30.0% | |
| TACGATCAGTGAATTTGATT+TGG | - | chr3.4:94737184-94737203 | None:intergenic | 30.0% | |
| TATAAAAGGGAAGAAACAGA+GGG | - | chr3.4:94735542-94735561 | None:intergenic | 30.0% | |
| TGTCACATACATCGAAAATA+TGG | - | chr3.4:94733792-94733811 | None:intergenic | 30.0% | |
| TGTGACACTGAGTATAATAT+AGG | + | chr3.4:94733805-94733824 | MS.gene40334:intron | 30.0% | |
| TTACAATTGTTGTGATGAAC+TGG | + | chr3.4:94737061-94737080 | MS.gene40334:CDS | 30.0% | |
| TTATAAAAGGGAAGAAACAG+AGG | - | chr3.4:94735543-94735562 | None:intergenic | 30.0% | |
| TTGACATTGATATGAGAACA+GGG | - | chr3.4:94737386-94737405 | None:intergenic | 30.0% | |
| TTGGAAATGTAACACAAAAC+AGG | - | chr3.4:94737469-94737488 | None:intergenic | 30.0% | |
| ! | AACATCATGTTTAGAGCTTA+AGG | + | chr3.4:94737787-94737806 | MS.gene40334:intron | 30.0% |
| ! | ACAGCATGACTTCAAATTTT+GGG | + | chr3.4:94735254-94735273 | MS.gene40334:intron | 30.0% |
| ! | CTGTATTTGAGATCAAACTT+TGG | + | chr3.4:94736850-94736869 | MS.gene40334:intron | 30.0% |
| ! | CTTTTCTCCTAATTAATTGC+AGG | + | chr3.4:94732919-94732938 | MS.gene40334:intron | 30.0% |
| ! | TAAATACATGTTGTCGCTTA+CGG | - | chr3.4:94736756-94736775 | None:intergenic | 30.0% |
| ! | TCTTTTGTATATTGTACCTG+CGG | + | chr3.4:94737283-94737302 | MS.gene40334:CDS | 30.0% |
| !! | AACCATTTCTAGCAAATTCA+TGG | - | chr3.4:94735291-94735310 | None:intergenic | 30.0% |
| !! | ATTAGGTATTTTTGTGGCAT+TGG | + | chr3.4:94736957-94736976 | MS.gene40334:intron | 30.0% |
| !!! | ATTTTTGGTATTCACTTTCC+TGG | + | chr3.4:94734432-94734451 | MS.gene40334:intron | 30.0% |
| !!! | GCATTTTTAGGATACACTTT+TGG | + | chr3.4:94737030-94737049 | MS.gene40334:CDS | 30.0% |
| AAAAAGAATAAGGGAAGGGA+TGG | + | chr3.4:94735362-94735381 | MS.gene40334:intron | 35.0% | |
| AAAATCTTTGCTGAGTGCAA+TGG | + | chr3.4:94734858-94734877 | MS.gene40334:intron | 35.0% | |
| AAACGGTCGTACAGTTATAT+TGG | + | chr3.4:94736214-94736233 | MS.gene40334:intron | 35.0% | |
| AAGAGGGACACCAATAAAAA+GGG | - | chr3.4:94737253-94737272 | None:intergenic | 35.0% | |
| AATCATTTCTGTGATTGCAG+CGG | + | chr3.4:94733002-94733021 | MS.gene40334:intron | 35.0% | |
| AATGGTCAAACTGTGATGTT+CGG | + | chr3.4:94735976-94735995 | MS.gene40334:intron | 35.0% | |
| ACAAACACAGATATTGGACA+CGG | - | chr3.4:94735843-94735862 | None:intergenic | 35.0% | |
| ACTCTCTTCTTGAGATGAAT+CGG | - | chr3.4:94737905-94737924 | None:intergenic | 35.0% | |
| AGAAAAGAATTGCAGCAGAT+CGG | - | chr3.4:94732906-94732925 | None:intergenic | 35.0% | |
| AGATCGGAGAAAGATAGAAT+TGG | - | chr3.4:94732890-94732909 | None:intergenic | 35.0% | |
| AGATTGTAGAATATGGGCTT+TGG | + | chr3.4:94737621-94737640 | MS.gene40334:intron | 35.0% | |
| AGGTTTGTGCGCAATTATTA+AGG | - | chr3.4:94736498-94736517 | None:intergenic | 35.0% | |
| ATCAACAGAGTAATCTTACC+TGG | - | chr3.4:94735072-94735091 | None:intergenic | 35.0% | |
| ATCGGAGAAAGATAGAATTG+GGG | - | chr3.4:94732888-94732907 | None:intergenic | 35.0% | |
| ATTCAGGACATGAACATTTG+AGG | + | chr3.4:94736176-94736195 | MS.gene40334:intron | 35.0% | |
| CAGTTTATACTGTATGTGTG+TGG | + | chr3.4:94737535-94737554 | MS.gene40334:intron | 35.0% | |
| CGACTATAATTTAGAGACAG+AGG | + | chr3.4:94736522-94736541 | MS.gene40334:intron | 35.0% | |
| CTAGTAAATGCACTGTGTTA+TGG | + | chr3.4:94736077-94736096 | MS.gene40334:intron | 35.0% | |
| CTGCAACAAAAGATATTGTG+CGG | - | chr3.4:94737706-94737725 | None:intergenic | 35.0% | |
| GAAAATACCTCAATCTACGT+GGG | + | chr3.4:94732670-94732689 | MS.gene40334:intron | 35.0% | |
| GAAGGGGAACAAAAAAATGA+GGG | + | chr3.4:94735497-94735516 | MS.gene40334:intron | 35.0% | |
| GATCGGAGAAAGATAGAATT+GGG | - | chr3.4:94732889-94732908 | None:intergenic | 35.0% | |
| GATTAATTGATGGAGCAAAG+TGG | + | chr3.4:94735425-94735444 | MS.gene40334:intron | 35.0% | |
| GCAACAAACTATATCATCAC+AGG | - | chr3.4:94735681-94735700 | None:intergenic | 35.0% | |
| GGAATTGAAATGCTTTCTCT+TGG | + | chr3.4:94734630-94734649 | MS.gene40334:CDS | 35.0% | |
| GGGAAAAACGTTAATAGAGA+AGG | - | chr3.4:94737233-94737252 | None:intergenic | 35.0% | |
| GGGGGAAAATGATTAAATCA+GGG | - | chr3.4:94732869-94732888 | None:intergenic | 35.0% | |
| GGTACAATATACAAAAGAGC+AGG | - | chr3.4:94737281-94737300 | None:intergenic | 35.0% | |
| GTATTGTTCCATTTCAAACC+AGG | - | chr3.4:94734453-94734472 | None:intergenic | 35.0% | |
| GTTAGTGCTTCATAGTTCAA+AGG | + | chr3.4:94735863-94735882 | MS.gene40334:intron | 35.0% | |
| TAAAAGAATAAGGGCCTGTT+CGG | - | chr3.4:94733399-94733418 | None:intergenic | 35.0% | |
| TATATTGTACCTGCGGTAAT+TGG | + | chr3.4:94737290-94737309 | MS.gene40334:CDS | 35.0% | |
| TCAACAGAGTAATCTTACCT+GGG | - | chr3.4:94735071-94735090 | None:intergenic | 35.0% | |
| TCATTTCGCAGCAAAAATGA+TGG | - | chr3.4:94733050-94733069 | None:intergenic | 35.0% | |
| TCTACAACCTGCAATTTGAA+GGG | + | chr3.4:94735480-94735499 | MS.gene40334:intron | 35.0% | |
| TCTTTGACCTTTGACTCTTT+CGG | + | chr3.4:94732827-94732846 | MS.gene40334:intron | 35.0% | |
| TGAAAATACCTCAATCTACG+TGG | + | chr3.4:94732669-94732688 | MS.gene40334:intron | 35.0% | |
| TGAAGGGGAACAAAAAAATG+AGG | + | chr3.4:94735496-94735515 | MS.gene40334:intron | 35.0% | |
| TGAATGTAACTACCATGTGT+CGG | - | chr3.4:94735774-94735793 | None:intergenic | 35.0% | |
| TGACGAACCTGCAATTAATT+AGG | - | chr3.4:94732929-94732948 | None:intergenic | 35.0% | |
| TGGCTGGCAAATAACATATT+GGG | + | chr3.4:94734007-94734026 | MS.gene40334:CDS | 35.0% | |
| TGGGGGAAAATGATTAAATC+AGG | - | chr3.4:94732870-94732889 | None:intergenic | 35.0% | |
| TTAGTATTACAGTTCCCCAT+AGG | - | chr3.4:94735339-94735358 | None:intergenic | 35.0% | |
| TTCTACAACCTGCAATTTGA+AGG | + | chr3.4:94735479-94735498 | MS.gene40334:intron | 35.0% | |
| TTGGCTGGCAAATAACATAT+TGG | + | chr3.4:94734006-94734025 | MS.gene40334:CDS | 35.0% | |
| TTTACTACCGAAAGAGTCAA+AGG | - | chr3.4:94732837-94732856 | None:intergenic | 35.0% | |
| ! | AGGTTCGTCAAATGTGTTTT+TGG | + | chr3.4:94732939-94732958 | MS.gene40334:intron | 35.0% |
| ! | ATCATGTTTAGAGCTTAAGG+TGG | + | chr3.4:94737790-94737809 | MS.gene40334:intron | 35.0% |
| ! | CACAGCATGACTTCAAATTT+TGG | + | chr3.4:94735253-94735272 | MS.gene40334:intron | 35.0% |
| ! | GGAGTTACTGGTGTTAATTA+CGG | - | chr3.4:94734593-94734612 | None:intergenic | 35.0% |
| ! | GGTTTGATTTCAAGCATTAC+CGG | + | chr3.4:94737426-94737445 | MS.gene40334:intron | 35.0% |
| ! | TATAGGTAAAGCATCAAACC+TGG | - | chr3.4:94734048-94734067 | None:intergenic | 35.0% |
| ! | TTCACTTTCCTGGTTTGAAA+TGG | + | chr3.4:94734442-94734461 | MS.gene40334:intron | 35.0% |
| ! | TTCATCCTTTTTGCTAGACT+TGG | - | chr3.4:94737932-94737951 | None:intergenic | 35.0% |
| !! | TGCCATGAATTTGCTAGAAA+TGG | + | chr3.4:94735286-94735305 | MS.gene40334:intron | 35.0% |
| !! | TTCTTTGGATTAGCAGCATT+GGG | - | chr3.4:94735631-94735650 | None:intergenic | 35.0% |
| !! | TTTAGGATACACTTTTGGCT+TGG | + | chr3.4:94737035-94737054 | MS.gene40334:CDS | 35.0% |
| !!! | GACTTGTGACCAGTTTTAAA+AGG | + | chr3.4:94737678-94737697 | MS.gene40334:intron | 35.0% |
| !!! | TTTCTCTTCCACTTTTTGCA+GGG | + | chr3.4:94733695-94733714 | MS.gene40334:intron | 35.0% |
| !!! | TTTTCTCTTCCACTTTTTGC+AGG | + | chr3.4:94733694-94733713 | MS.gene40334:intron | 35.0% |
| AAAACGCATAGCATGTTCCT+TGG | - | chr3.4:94733480-94733499 | None:intergenic | 40.0% | |
| AACGCTTTCTGCCAAATCAT+TGG | + | chr3.4:94733739-94733758 | MS.gene40334:CDS | 40.0% | |
| AACGTTACAGATGGAGTTAC+TGG | - | chr3.4:94734605-94734624 | None:intergenic | 40.0% | |
| AATACAGTGCCCTTTGGTTA+TGG | - | chr3.4:94736837-94736856 | None:intergenic | 40.0% | |
| AATTGATGGAGCAAAGTGGA+AGG | + | chr3.4:94735429-94735448 | MS.gene40334:intron | 40.0% | |
| ACAGGCTACTTCTTTGTACT+CGG | + | chr3.4:94733581-94733600 | MS.gene40334:CDS | 40.0% | |
| ACTCCATCTGTAACGTTTAC+AGG | + | chr3.4:94734608-94734627 | MS.gene40334:intron | 40.0% | |
| AGACAATTATTGTGAGACGG+AGG | - | chr3.4:94736282-94736301 | None:intergenic | 40.0% | |
| AGCATTGCACTTCCAACAAA+GGG | - | chr3.4:94733503-94733522 | None:intergenic | 40.0% | |
| AGTGCATTTACTAGATCCAG+CGG | - | chr3.4:94736071-94736090 | None:intergenic | 40.0% | |
| ATACAGTGCCCTTTGGTTAT+GGG | - | chr3.4:94736836-94736855 | None:intergenic | 40.0% | |
| ATCTCAAATACAGTGCCCTT+TGG | - | chr3.4:94736843-94736862 | None:intergenic | 40.0% | |
| ATGAACCGTTTATGCTTACG+TGG | - | chr3.4:94732740-94732759 | None:intergenic | 40.0% | |
| ATTCAAGGTTTAGCGGTGAT+AGG | + | chr3.4:94734302-94734321 | MS.gene40334:intron | 40.0% | |
| ATTGATGGAGCAAAGTGGAA+GGG | + | chr3.4:94735430-94735449 | MS.gene40334:intron | 40.0% | |
| CAAGAGGGACACCAATAAAA+AGG | - | chr3.4:94737254-94737273 | None:intergenic | 40.0% | |
| CAAGCAAAGTTGCCTTTAGA+AGG | - | chr3.4:94737654-94737673 | None:intergenic | 40.0% | |
| CACGGAACGAATTGCTAATT+TGG | + | chr3.4:94733074-94733093 | MS.gene40334:intron | 40.0% | |
| CAGCACTATTCAAGGTTTAG+CGG | + | chr3.4:94734295-94734314 | MS.gene40334:intron | 40.0% | |
| CAGGTTCGTAACCATTTAGA+TGG | + | chr3.4:94734122-94734141 | MS.gene40334:intron | 40.0% | |
| CCTTGTAAACTCAATCTCGA+CGG | - | chr3.4:94733924-94733943 | None:intergenic | 40.0% | |
| CTACAACCTGCAATTTGAAG+GGG | + | chr3.4:94735481-94735500 | MS.gene40334:intron | 40.0% | |
| CTCCATCTGTAACGTTTACA+GGG | + | chr3.4:94734609-94734628 | MS.gene40334:intron | 40.0% | |
| CTGGAATGGTGAAGTTAAAC+AGG | + | chr3.4:94737334-94737353 | MS.gene40334:CDS | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr3.4:94736281-94736300 | None:intergenic | 40.0% | |
| GAGTCAAAGGTCAAAGAGAA+CGG | - | chr3.4:94732824-94732843 | None:intergenic | 40.0% | |
| GGAATGATGATCTCATAGTC+TGG | + | chr3.4:94733760-94733779 | MS.gene40334:CDS | 40.0% | |
| GGATCTACTTTGACAACAAG+CGG | - | chr3.4:94733237-94733256 | None:intergenic | 40.0% | |
| GGCTGTGTAAAATAGGTGTA+AGG | - | chr3.4:94733903-94733922 | None:intergenic | 40.0% | |
| GTTCATCCTTCTCATCTCAT+TGG | + | chr3.4:94732754-94732773 | MS.gene40334:intron | 40.0% | |
| GTTTGCCACGTAAGCATAAA+CGG | + | chr3.4:94732732-94732751 | MS.gene40334:intron | 40.0% | |
| TAAATGCACTGTGTTATGGC+TGG | + | chr3.4:94736081-94736100 | MS.gene40334:intron | 40.0% | |
| TAATCGCGTTGCCATCTAAA+TGG | - | chr3.4:94734136-94734155 | None:intergenic | 40.0% | |
| TAATGTTGCCCTGCAAAAAG+TGG | - | chr3.4:94733706-94733725 | None:intergenic | 40.0% | |
| TAGATGGAGACAATGGAGAA+GGG | + | chr3.4:94735184-94735203 | MS.gene40334:intron | 40.0% | |
| TAGCATTGCACTTCCAACAA+AGG | - | chr3.4:94733504-94733523 | None:intergenic | 40.0% | |
| TCAAATTAGCCAATCCGAAC+AGG | + | chr3.4:94733382-94733401 | MS.gene40334:intron | 40.0% | |
| TCGCAGACAGACATGAATAT+AGG | - | chr3.4:94734065-94734084 | None:intergenic | 40.0% | |
| TCGGAGAAAGATAGAATTGG+GGG | - | chr3.4:94732887-94732906 | None:intergenic | 40.0% | |
| TGATATGAGAACAGGGCAAA+TGG | - | chr3.4:94737379-94737398 | None:intergenic | 40.0% | |
| TGATGCCAAGTCTAGCAAAA+AGG | + | chr3.4:94737924-94737943 | MS.gene40334:CDS | 40.0% | |
| TTAGTGAAGAGACGTTGTTC+TGG | + | chr3.4:94735899-94735918 | MS.gene40334:intron | 40.0% | |
| TTCACCATTCCAGATGCAAT+GGG | - | chr3.4:94737327-94737346 | None:intergenic | 40.0% | |
| TTCCCTGTAAACGTTACAGA+TGG | - | chr3.4:94734614-94734633 | None:intergenic | 40.0% | |
| TTGCTGCGAAATGAAGAACA+CGG | + | chr3.4:94733056-94733075 | MS.gene40334:intron | 40.0% | |
| TTTGTTCCCCTTCAAATTGC+AGG | - | chr3.4:94735490-94735509 | None:intergenic | 40.0% | |
| ! | ACCTGCGGTAATTGGATTTT+TGG | + | chr3.4:94737298-94737317 | MS.gene40334:CDS | 40.0% |
| ! | CATTCACATATTTTGCAGGC+TGG | + | chr3.4:94734750-94734769 | MS.gene40334:intron | 40.0% |
| ! | CCATTTTCAATGCTTGGACT+TGG | + | chr3.4:94735033-94735052 | MS.gene40334:CDS | 40.0% |
| ! | CTTGGTGATATTGTTATCCC+AGG | + | chr3.4:94735051-94735070 | MS.gene40334:CDS | 40.0% |
| ! | TGTTGTGATGAACTGGTTTC+AGG | + | chr3.4:94737068-94737087 | MS.gene40334:CDS | 40.0% |
| ! | TTAGTGAACACTGTGTTGAC+AGG | + | chr3.4:94733563-94733582 | MS.gene40334:CDS | 40.0% |
| !! | ACACTCTGAAATGTTGCACA+CGG | + | chr3.4:94736029-94736048 | MS.gene40334:intron | 40.0% |
| !! | AGGCACAAAAAAAAGTGCCA+GGG | - | chr3.4:94733967-94733986 | None:intergenic | 40.0% |
| !! | ATGAGGGTTCTAAAAGGGAA+TGG | + | chr3.4:94735513-94735532 | MS.gene40334:intron | 40.0% |
| !! | CCAAGTCCAAGCATTGAAAA+TGG | - | chr3.4:94735036-94735055 | None:intergenic | 40.0% |
| !! | CGGCGTTGATTTGAAGAAAT+TGG | - | chr3.4:94735823-94735842 | None:intergenic | 40.0% |
| !! | GGCAGAAAGCGTTTAATAGA+TGG | - | chr3.4:94733732-94733751 | None:intergenic | 40.0% |
| !! | GTTCTTTGGATTAGCAGCAT+TGG | - | chr3.4:94735632-94735651 | None:intergenic | 40.0% |
| !! | TCATTTTTGTATGTTGCCGC+AGG | + | chr3.4:94733198-94733217 | MS.gene40334:intron | 40.0% |
| !! | TCTTTGGATTAGCAGCATTG+GGG | - | chr3.4:94735630-94735649 | None:intergenic | 40.0% |
| !! | TGCGGTAATTGGATTTTTGG+CGG | + | chr3.4:94737301-94737320 | MS.gene40334:CDS | 40.0% |
| !!! | TGTGCGGAACCTTTTAAAAC+TGG | - | chr3.4:94737690-94737709 | None:intergenic | 40.0% |
| !!! | TTTTTGTGGCATTGGCTTTG+CGG | + | chr3.4:94736965-94736984 | MS.gene40334:CDS | 40.0% |
| AAAAGAGCAGGCTGACAAGA+GGG | - | chr3.4:94737269-94737288 | None:intergenic | 45.0% | |
| AGCTTAAGGTGGTCGAAATG+CGG | + | chr3.4:94737801-94737820 | MS.gene40334:intron | 45.0% | |
| ATACCTCAATCTACGTGGGT+CGG | + | chr3.4:94732674-94732693 | MS.gene40334:intron | 45.0% | |
| ATGGATCTAGTGTGCGAGAT+TGG | - | chr3.4:94733031-94733050 | None:intergenic | 45.0% | |
| ATTACAGTTCCCCATAGGAC+CGG | - | chr3.4:94735334-94735353 | None:intergenic | 45.0% | |
| CAATGTCAAACACCGACACA+TGG | + | chr3.4:94735759-94735778 | MS.gene40334:intron | 45.0% | |
| CATCCAAACAGGGAGAAGAA+GGG | - | chr3.4:94735406-94735425 | None:intergenic | 45.0% | |
| CCGTCGAGATTGAGTTTACA+AGG | + | chr3.4:94733921-94733940 | MS.gene40334:CDS | 45.0% | |
| CCTGTTATAACCGGTCCTAT+GGG | + | chr3.4:94735321-94735340 | MS.gene40334:intron | 45.0% | |
| CTGTTATAACCGGTCCTATG+GGG | + | chr3.4:94735322-94735341 | MS.gene40334:intron | 45.0% | |
| CTTCACCATTCCAGATGCAA+TGG | - | chr3.4:94737328-94737347 | None:intergenic | 45.0% | |
| GAATAAGGGAAGGGATGGAA+TGG | + | chr3.4:94735367-94735386 | MS.gene40334:intron | 45.0% | |
| GACAAACACAGTGATGCAAG+CGG | - | chr3.4:94733280-94733299 | None:intergenic | 45.0% | |
| GCCAAAAATCCAATTACCGC+AGG | - | chr3.4:94737302-94737321 | None:intergenic | 45.0% | |
| GCTTGCATCACTGTGTTTGT+CGG | + | chr3.4:94733279-94733298 | MS.gene40334:CDS | 45.0% | |
| GTAGATGGAGACAATGGAGA+AGG | + | chr3.4:94735183-94735202 | MS.gene40334:intron | 45.0% | |
| TATCCCTTCTTCTCCCTGTT+TGG | + | chr3.4:94735400-94735419 | MS.gene40334:intron | 45.0% | |
| TATGCAGGAGACAATGTCCA+AGG | + | chr3.4:94733460-94733479 | MS.gene40334:intron | 45.0% | |
| TCATCCAAACAGGGAGAAGA+AGG | - | chr3.4:94735407-94735426 | None:intergenic | 45.0% | |
| TCTCGACGGCTGTGTAAAAT+AGG | - | chr3.4:94733910-94733929 | None:intergenic | 45.0% | |
| TGCATGCCAATGAGATGAGA+AGG | - | chr3.4:94732763-94732782 | None:intergenic | 45.0% | |
| TGTGAGGATTGTGGTCATTG+TGG | + | chr3.4:94737158-94737177 | MS.gene40334:intron | 45.0% | |
| TTACACACGTGCGCTTATTC+AGG | + | chr3.4:94736160-94736179 | MS.gene40334:intron | 45.0% | |
| TTCAAACTGTGCTGGGTAGA+TGG | + | chr3.4:94735168-94735187 | MS.gene40334:intron | 45.0% | |
| TTGCGGTTTGATGTGTCTAG+AGG | + | chr3.4:94736982-94737001 | MS.gene40334:CDS | 45.0% | |
| ! | AATCTACGTGGGTCGGTTTA+TGG | + | chr3.4:94732681-94732700 | MS.gene40334:intron | 45.0% |
| ! | CATGTGTCGGTGTTTGACAT+TGG | - | chr3.4:94735761-94735780 | None:intergenic | 45.0% |
| ! | GCTATGCGTTTTCCCTTTGT+TGG | + | chr3.4:94733488-94733507 | MS.gene40334:CDS | 45.0% |
| ! | GGTTTTCTTCACTCCTGTGA+TGG | + | chr3.4:94734797-94734816 | MS.gene40334:CDS | 45.0% |
| ! | TTTGACAACAAGCGGTGCTA+AGG | - | chr3.4:94733229-94733248 | None:intergenic | 45.0% |
| !! | ACATGGGAAGTACTTACCGT+TGG | - | chr3.4:94733333-94733352 | None:intergenic | 45.0% |
| !! | CAGGCACAAAAAAAAGTGCC+AGG | - | chr3.4:94733968-94733987 | None:intergenic | 45.0% |
| !! | CTTTGGATTAGCAGCATTGG+GGG | - | chr3.4:94735629-94735648 | None:intergenic | 45.0% |
| !! | GCAAGGCCATTTTCAATGCT+TGG | + | chr3.4:94735027-94735046 | MS.gene40334:CDS | 45.0% |
| !!! | CTGGCACTTTTTTTTGTGCC+TGG | + | chr3.4:94733966-94733985 | MS.gene40334:CDS | 45.0% |
| !! | AATATAATAATAATAATAGA+AGG | - | chr3.4:94732979-94732998 | None:intergenic | 5.0% |
| AAACCGACCCACGTAGATTG+AGG | - | chr3.4:94732680-94732699 | None:intergenic | 50.0% | |
| ACTGTGATGTTCGGTTGTCG+AGG | + | chr3.4:94735985-94736004 | MS.gene40334:intron | 50.0% | |
| AGGGAAGGGATGGAATGGAA+AGG | + | chr3.4:94735372-94735391 | MS.gene40334:intron | 50.0% | |
| CAAAAGAGCAGGCTGACAAG+AGG | - | chr3.4:94737270-94737289 | None:intergenic | 50.0% | |
| CATTTCTGTGATTGCAGCGG+AGG | + | chr3.4:94733005-94733024 | MS.gene40334:intron | 50.0% | |
| CCCATAGGACCGGTTATAAC+AGG | - | chr3.4:94735324-94735343 | None:intergenic | 50.0% | |
| CGAAATGCGGTATGCTTGCT+AGG | + | chr3.4:94737814-94737833 | MS.gene40334:intron | 50.0% | |
| CGTCAAACCAACTGCACCAA+CGG | + | chr3.4:94733314-94733333 | MS.gene40334:CDS | 50.0% | |
| GAAGTCATGCTGTGACAGCA+AGG | - | chr3.4:94735247-94735266 | None:intergenic | 50.0% | |
| GAATAAGGGCCTGTTCGGAT+TGG | - | chr3.4:94733394-94733413 | None:intergenic | 50.0% | |
| GAGAATGGCACCAGTCTTGA+AGG | - | chr3.4:94734658-94734677 | None:intergenic | 50.0% | |
| GCCTGTTATAACCGGTCCTA+TGG | + | chr3.4:94735320-94735339 | MS.gene40334:intron | 50.0% | |
| GGCTAGAGCATGCACTCAAA+CGG | + | chr3.4:94736197-94736216 | MS.gene40334:intron | 50.0% | |
| GGGGAATGTTGTGAGGATTG+TGG | + | chr3.4:94737149-94737168 | MS.gene40334:intron | 50.0% | |
| GTACTTACCGTTGGTGCAGT+TGG | - | chr3.4:94733324-94733343 | None:intergenic | 50.0% | |
| TCGTTTGGGGGAATGTTGTG+AGG | + | chr3.4:94737142-94737161 | MS.gene40334:intron | 50.0% | |
| TCTCTTGGCTCCTTCAAGAC+TGG | + | chr3.4:94734645-94734664 | MS.gene40334:CDS | 50.0% | |
| TGCTGGGTAGATGGAGACAA+TGG | + | chr3.4:94735177-94735196 | MS.gene40334:intron | 50.0% | |
| TTTGCAACGCTGACCATCAC+AGG | - | chr3.4:94734813-94734832 | None:intergenic | 50.0% | |
| ! | CGGTGCTAAGGTTAAACCTG+CGG | - | chr3.4:94733217-94733236 | None:intergenic | 50.0% |
| !! | CAAGACTGGTGCCATTCTCT+TGG | + | chr3.4:94734659-94734678 | MS.gene40334:CDS | 50.0% |
| !! | CGTTGGTGCAGTTGGTTTGA+CGG | - | chr3.4:94733316-94733335 | None:intergenic | 50.0% |
| !! | GTGCAGTTGGTTTGACGGAT+CGG | - | chr3.4:94733311-94733330 | None:intergenic | 50.0% |
| ATGCTTGCGCAGAGCATACC+AGG | - | chr3.4:94733987-94734006 | None:intergenic | 55.0% | |
| GCACTGTGTTATGGCTGGAG+AGG | + | chr3.4:94736086-94736105 | MS.gene40334:intron | 55.0% | |
| GCCTTGCAGAATCTGCTGTG+GGG | - | chr3.4:94735014-94735033 | None:intergenic | 55.0% | |
| GGCCTTGCAGAATCTGCTGT+GGG | - | chr3.4:94735015-94735034 | None:intergenic | 55.0% | |
| GGCTGCACAGGTGATTCATG+TGG | + | chr3.4:94737089-94737108 | MS.gene40334:intron | 55.0% | |
| GGGTCTTGCTTTCTGCATCC+AGG | + | chr3.4:94734027-94734046 | MS.gene40334:CDS | 55.0% | |
| GGTATGCTCTGCGCAAGCAT+TGG | + | chr3.4:94733987-94734006 | MS.gene40334:CDS | 55.0% | |
| TCCCCACAGCAGATTCTGCA+AGG | + | chr3.4:94735010-94735029 | MS.gene40334:CDS | 55.0% | |
| TGATCGTACACGAGTCGCTG+AGG | + | chr3.4:94737196-94737215 | MS.gene40334:intron | 55.0% | |
| ! | GAACTGGTTTCAGGCTGCAC+AGG | + | chr3.4:94737077-94737096 | MS.gene40334:CDS | 55.0% |
| ! | TGCGGTATGCTTGCTAGGTG+TGG | + | chr3.4:94737819-94737838 | MS.gene40334:intron | 55.0% |
| ! | TGGCCTTGCAGAATCTGCTG+TGG | - | chr3.4:94735016-94735035 | None:intergenic | 55.0% |
| ! | TTTTGGCGGCCCATTGCATC+TGG | + | chr3.4:94737315-94737334 | MS.gene40334:CDS | 55.0% |
| CAGATCGTTGCTGCAGTCCC+TGG | + | chr3.4:94733947-94733966 | MS.gene40334:CDS | 60.0% | |
| CGTACACGAGTCGCTGAGGT+TGG | + | chr3.4:94737200-94737219 | MS.gene40334:intron | 60.0% | |
| GCGGCCCATTGCATCTGGAA+TGG | + | chr3.4:94737320-94737339 | MS.gene40334:CDS | 60.0% | |
| TAGATCCAGCGGCTCTGCTG+CGG | - | chr3.4:94736060-94736079 | None:intergenic | 60.0% | |
| !! | TGCTCTGCGCAAGCATTGGC+TGG | + | chr3.4:94733991-94734010 | MS.gene40334:CDS | 60.0% |
| TGCAGCCGCAGCAGAGCCGC+TGG | + | chr3.4:94736052-94736071 | MS.gene40334:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94732649 | 94737954 | 94732649 | ID=MS.gene40334 |
| chr3.4 | mRNA | 94732649 | 94737954 | 94732649 | ID=MS.gene40334.t1;Parent=MS.gene40334 |
| chr3.4 | exon | 94732649 | 94732655 | 94732649 | ID=MS.gene40334.t1.exon1;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94732649 | 94732655 | 94732649 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94733220 | 94733335 | 94733220 | ID=MS.gene40334.t1.exon2;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94733220 | 94733335 | 94733220 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94733467 | 94733618 | 94733467 | ID=MS.gene40334.t1.exon3;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94733467 | 94733618 | 94733467 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94733716 | 94733801 | 94733716 | ID=MS.gene40334.t1.exon4;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94733716 | 94733801 | 94733716 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94733921 | 94734048 | 94733921 | ID=MS.gene40334.t1.exon5;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94733921 | 94734048 | 94733921 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94734630 | 94734680 | 94734630 | ID=MS.gene40334.t1.exon6;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94734630 | 94734680 | 94734630 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94734768 | 94734854 | 94734768 | ID=MS.gene40334.t1.exon7;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94734768 | 94734854 | 94734768 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94735003 | 94735072 | 94735003 | ID=MS.gene40334.t1.exon8;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94735003 | 94735072 | 94735003 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94736962 | 94737098 | 94736962 | ID=MS.gene40334.t1.exon9;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94736962 | 94737098 | 94736962 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94737278 | 94737355 | 94737278 | ID=MS.gene40334.t1.exon10;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94737278 | 94737355 | 94737278 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| chr3.4 | exon | 94737874 | 94737954 | 94737874 | ID=MS.gene40334.t1.exon11;Parent=MS.gene40334.t1 |
| chr3.4 | CDS | 94737874 | 94737954 | 94737874 | ID=cds.MS.gene40334.t1;Parent=MS.gene40334.t1 |
| Gene Sequence |
| Protein sequence |
