Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050864.t1 | XP_003626299.1 | 98.4 | 251 | 4 | 0 | 3 | 253 | 32 | 282 | 1.40E-135 | 492.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050864.t1 | Q54TS4 | 35.8 | 193 | 122 | 2 | 55 | 246 | 126 | 317 | 4.3e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050864.t1 | G7KYP9 | 98.4 | 251 | 4 | 0 | 3 | 253 | 32 | 282 | 9.9e-136 | 492.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050864 | MS.gene052494 | 0.805399 | 1.36E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene056998 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene058210 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene050864 | MS.gene06042 | 0.829371 | 5.34E-55 | -1.69E-46 |
| MS.gene050864 | MS.gene061773 | 0.822746 | 2.01E-53 | -1.69E-46 |
| MS.gene050864 | MS.gene061774 | 0.815778 | 7.77E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene061775 | 0.804547 | 2.05E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene062294 | -0.812233 | 4.70E-51 | -1.69E-46 |
| MS.gene050864 | MS.gene063145 | 0.801925 | 7.15E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene065502 | -0.81386 | 2.07E-51 | -1.69E-46 |
| MS.gene050864 | MS.gene067556 | 0.814363 | 1.60E-51 | -1.69E-46 |
| MS.gene050864 | MS.gene067873 | 0.819238 | 1.29E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene072464 | 0.948978 | 3.21E-107 | -1.69E-46 |
| MS.gene050864 | MS.gene09934 | 0.839948 | 1.17E-57 | -1.69E-46 |
| MS.gene050864 | MS.gene22553 | 0.849989 | 2.27E-60 | -1.69E-46 |
| MS.gene050864 | MS.gene24298 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene050864 | MS.gene24302 | 0.801608 | 8.31E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene26941 | 0.820991 | 5.12E-53 | -1.69E-46 |
| MS.gene050864 | MS.gene27333 | 0.826068 | 3.32E-54 | -1.69E-46 |
| MS.gene050864 | MS.gene28021 | -0.841885 | 3.62E-58 | -1.69E-46 |
| MS.gene050864 | MS.gene31950 | 0.829496 | 4.98E-55 | -1.69E-46 |
| MS.gene050864 | MS.gene37467 | 0.820421 | 6.92E-53 | -1.69E-46 |
| MS.gene050864 | MS.gene40209 | 0.830215 | 3.33E-55 | -1.69E-46 |
| MS.gene050864 | MS.gene40334 | 0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene050864 | MS.gene41016 | 0.846233 | 2.47E-59 | -1.69E-46 |
| MS.gene050864 | MS.gene41821 | 0.819816 | 9.52E-53 | -1.69E-46 |
| MS.gene050864 | MS.gene42376 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene050864 | MS.gene44024 | 0.816938 | 4.27E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene53084 | -0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene56419 | 0.873525 | 1.37E-67 | -1.69E-46 |
| MS.gene050864 | MS.gene61947 | 0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene63567 | -0.804104 | 2.54E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene68200 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene050864 | MS.gene68793 | 0.806391 | 8.41E-50 | -1.69E-46 |
| MS.gene050864 | MS.gene70240 | 0.800985 | 1.11E-48 | -1.69E-46 |
| MS.gene050864 | MS.gene70804 | 0.829572 | 4.78E-55 | -1.69E-46 |
| MS.gene050864 | MS.gene71182 | 0.818923 | 1.52E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene72118 | -0.807041 | 6.13E-50 | -1.69E-46 |
| MS.gene050864 | MS.gene74342 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene76894 | -0.806604 | 7.59E-50 | -1.69E-46 |
| MS.gene050864 | MS.gene78249 | 0.815305 | 9.89E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene78309 | 0.80366 | 3.13E-49 | -1.69E-46 |
| MS.gene050864 | MS.gene91078 | 0.82567 | 4.13E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63506 | MS.gene050864 | PPI |
| MS.gene29533 | MS.gene050864 | PPI |
| MS.gene008140 | MS.gene050864 | PPI |
| MS.gene32501 | MS.gene050864 | PPI |
| MS.gene62170 | MS.gene050864 | PPI |
| MS.gene50119 | MS.gene050864 | PPI |
| MS.gene59238 | MS.gene050864 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050864.t1 | MTR_7g113620 | 98.406 | 251 | 4 | 0 | 3 | 253 | 32 | 282 | 0.0 | 504 |
| MS.gene050864.t1 | MTR_5g081040 | 37.805 | 246 | 142 | 5 | 6 | 249 | 36 | 272 | 1.57e-52 | 172 |
| MS.gene050864.t1 | MTR_3g069150 | 38.776 | 245 | 139 | 4 | 7 | 249 | 37 | 272 | 2.55e-49 | 163 |
| MS.gene050864.t1 | MTR_5g081040 | 39.423 | 208 | 122 | 2 | 44 | 249 | 7 | 212 | 1.34e-48 | 160 |
| MS.gene050864.t1 | MTR_3g069170 | 39.048 | 210 | 120 | 3 | 7 | 214 | 37 | 240 | 5.12e-43 | 146 |
| MS.gene050864.t1 | MTR_3g069150 | 38.764 | 178 | 101 | 3 | 7 | 182 | 37 | 208 | 1.85e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050864.t1 | AT5G27490 | 80.478 | 251 | 49 | 0 | 3 | 253 | 32 | 282 | 1.07e-156 | 437 |
| MS.gene050864.t1 | AT3G05280 | 78.884 | 251 | 53 | 0 | 3 | 253 | 31 | 281 | 7.14e-143 | 402 |
| MS.gene050864.t1 | AT2G39805 | 38.554 | 249 | 140 | 5 | 3 | 249 | 37 | 274 | 1.18e-54 | 177 |
| MS.gene050864.t1 | AT2G39805 | 38.554 | 249 | 141 | 5 | 3 | 249 | 37 | 275 | 4.21e-53 | 173 |
Find 73 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCAACTATTCTGCCTATA+TGG | 0.275933 | 7.1:-2881337 | MS.gene050864:CDS |
| AATATTTGTAGCAGCATCTA+TGG | 0.291783 | 7.1:-2881521 | MS.gene050864:CDS |
| GGAAGATCACCGGTGGTTCT+AGG | 0.343439 | 7.1:-2884032 | MS.gene050864:CDS |
| TACTCAGGTATGGACCATTC+TGG | 0.345340 | 7.1:-2881558 | MS.gene050864:intron |
| AAAAGGTCTACTTACAAATC+AGG | 0.347085 | 7.1:+2882969 | None:intergenic |
| TGGGTGATTGCAGGTGTGGC+AGG | 0.371118 | 7.1:-2881161 | MS.gene050864:CDS |
| AGGTGGTTCTTCATTGTTGC+TGG | 0.371924 | 7.1:-2881077 | MS.gene050864:CDS |
| CATTTGTGGCACTTAACCTT+CGG | 0.374032 | 7.1:-2881124 | MS.gene050864:CDS |
| CAATCCAGTTTCCTCTTAAA+CGG | 0.381688 | 7.1:+2880995 | None:intergenic |
| GAGCTGGAATAAAGACAAAC+AGG | 0.390832 | 7.1:+2881308 | None:intergenic |
| TTCTTCTGATGAACCTCAGC+AGG | 0.399077 | 7.1:-2883126 | MS.gene050864:CDS |
| GTTTGTCTTTATTCCAGCTC+TGG | 0.400569 | 7.1:-2881305 | MS.gene050864:intron |
| CTCAGCAGGGTGGTTGGCTT+CGG | 0.402877 | 7.1:-2883112 | MS.gene050864:CDS |
| TCATTAAAAGTTCCTCTGAA+TGG | 0.411432 | 7.1:+2883008 | None:intergenic |
| ACAAGCTGAAGGATCAGAAA+TGG | 0.419782 | 7.1:-2881474 | MS.gene050864:CDS |
| ATATTCAGATGGGTGATTGC+AGG | 0.441456 | 7.1:-2881170 | MS.gene050864:CDS |
| GAAGTATCGACATCAAAGTA+TGG | 0.450124 | 7.1:+2883065 | None:intergenic |
| ATTTGTGGCACTTAACCTTC+GGG | 0.459603 | 7.1:-2881123 | MS.gene050864:CDS |
| AATCTGGTGACTTGGTCTGC+TGG | 0.463897 | 7.1:-2881439 | MS.gene050864:CDS |
| GAGAAGCAACTTACCAGAGC+TGG | 0.464299 | 7.1:+2881292 | None:intergenic |
| ATCTTCCCCTGAGCTTGTGA+TGG | 0.468252 | 7.1:+2884048 | None:intergenic |
| CAAACAGGGAATATCCATAT+AGG | 0.469322 | 7.1:+2881323 | None:intergenic |
| ATTTCCTCCATCACAAGCTC+AGG | 0.469322 | 7.1:-2884055 | MS.gene050864:CDS |
| TCTGTTGCAGTTGGCTTTAG+CGG | 0.472890 | 7.1:-2881048 | MS.gene050864:CDS |
| ATTAAAGATCTACCTCTTCA+CGG | 0.481807 | 7.1:-2881021 | MS.gene050864:CDS |
| ATGGGACTATGACATAAATC+TGG | 0.483862 | 7.1:-2881455 | MS.gene050864:CDS |
| GTGTTTGTCCATTGTCCCAT+TGG | 0.488665 | 7.1:-2881195 | MS.gene050864:CDS |
| ATGAACCTCAGCAGGGTGGT+TGG | 0.497811 | 7.1:-2883118 | MS.gene050864:CDS |
| GTTCATGTCAGCAACATTTG+TGG | 0.509994 | 7.1:-2881138 | MS.gene050864:CDS |
| CAAGCTGAAGGATCAGAAAT+GGG | 0.517844 | 7.1:-2881473 | MS.gene050864:CDS |
| CCCATCTGAATATATCCAAT+GGG | 0.523908 | 7.1:+2881180 | None:intergenic |
| CAAGCTCAGGGGAAGATCAC+CGG | 0.528014 | 7.1:-2884042 | MS.gene050864:CDS |
| CGGGCACATATCATGTCGGC+AGG | 0.530948 | 7.1:-2881104 | MS.gene050864:CDS |
| CCCATTGGATATATTCAGAT+GGG | 0.538766 | 7.1:-2881180 | MS.gene050864:CDS |
| TCCCATTGGATATATTCAGA+TGG | 0.544799 | 7.1:-2881181 | MS.gene050864:CDS |
| TTCCCCTGAGCTTGTGATGG+AGG | 0.549325 | 7.1:+2884051 | None:intergenic |
| TCATCAGAAGAACCAGATGC+AGG | 0.552062 | 7.1:+2883137 | None:intergenic |
| GGGTGATTGCAGGTGTGGCA+GGG | 0.554516 | 7.1:-2881160 | MS.gene050864:CDS |
| ATGACATAAATCTGGTGACT+TGG | 0.561043 | 7.1:-2881447 | MS.gene050864:CDS |
| GTATAGACAAAGAGGAATGA+TGG | 0.561761 | 7.1:+2881396 | None:intergenic |
| ACCCATCTGAATATATCCAA+TGG | 0.568674 | 7.1:+2881179 | None:intergenic |
| ATATCATGTCGGCAGGTGAA+AGG | 0.568955 | 7.1:-2881097 | MS.gene050864:CDS |
| ATACTTTGATGTCGATACTT+CGG | 0.569777 | 7.1:-2883063 | MS.gene050864:CDS |
| GAATATATCCAATGGGACAA+TGG | 0.572781 | 7.1:+2881187 | None:intergenic |
| CCGGTACAGAGAAGTATTTG+AGG | 0.576562 | 7.1:+2881368 | None:intergenic |
| AAAGGTCTACTTACAAATCA+GGG | 0.579016 | 7.1:+2882970 | None:intergenic |
| CCTCAAATACTTCTCTGTAC+CGG | 0.581136 | 7.1:-2881368 | MS.gene050864:CDS |
| TCGAGGTGGCCTAGAACCAC+CGG | 0.584989 | 7.1:+2884023 | None:intergenic |
| ATATTTGTAGCAGCATCTAT+GGG | 0.585347 | 7.1:-2881520 | MS.gene050864:CDS |
| CAAATACTTCTCTGTACCGG+CGG | 0.587474 | 7.1:-2881365 | MS.gene050864:CDS |
| CAGATGGGTGATTGCAGGTG+TGG | 0.599018 | 7.1:-2881165 | MS.gene050864:CDS |
| AGGATTACGTATAGACAAAG+AGG | 0.600243 | 7.1:+2881388 | None:intergenic |
| GTCTACTTACAAATCAGGGT+TGG | 0.601290 | 7.1:+2882974 | None:intergenic |
| AGAGTGGTGCAAATCCAGAA+TGG | 0.616599 | 7.1:+2881544 | None:intergenic |
| TCTTCTGATGAACCTCAGCA+GGG | 0.619382 | 7.1:-2883125 | MS.gene050864:CDS |
| AAATACTTCTCTGTACCGGC+GGG | 0.619911 | 7.1:-2881364 | MS.gene050864:CDS |
| ATATATAGCACACAAGCTGA+AGG | 0.625103 | 7.1:-2881485 | MS.gene050864:CDS |
| AGGCCACCTCGAGATGCAGA+TGG | 0.625410 | 7.1:-2884012 | MS.gene050864:intron |
| TTTCCTCCATCACAAGCTCA+GGG | 0.627295 | 7.1:-2884054 | MS.gene050864:CDS |
| CGAAGCCAACCACCCTGCTG+AGG | 0.631145 | 7.1:+2883113 | None:intergenic |
| TGCTGCTACAAATATTAGAG+TGG | 0.638926 | 7.1:+2881528 | None:intergenic |
| TCTGATGAACCTCAGCAGGG+TGG | 0.640708 | 7.1:-2883122 | MS.gene050864:CDS |
| CTTAAACGGATACCGTGAAG+AGG | 0.641911 | 7.1:+2881009 | None:intergenic |
| TCATGTCGGCAGGTGAAAGG+TGG | 0.649545 | 7.1:-2881094 | MS.gene050864:CDS |
| ATACTTCGGATGTTCTAGAG+AGG | 0.653109 | 7.1:-2883049 | MS.gene050864:CDS |
| AAAATACCATCTGCATCTCG+AGG | 0.655529 | 7.1:+2884006 | None:intergenic |
| CCGACATGATATGTGCCCGA+AGG | 0.658174 | 7.1:+2881108 | None:intergenic |
| AATAGTTGAACAAGTCCCGC+CGG | 0.666349 | 7.1:+2881349 | None:intergenic |
| CCTTCGGGCACATATCATGT+CGG | 0.666772 | 7.1:-2881108 | MS.gene050864:CDS |
| ATACCATCTGCATCTCGAGG+TGG | 0.680065 | 7.1:+2884009 | None:intergenic |
| AGCTGGAATAAAGACAAACA+GGG | 0.694942 | 7.1:+2881309 | None:intergenic |
| TTCCTCCATCACAAGCTCAG+GGG | 0.701946 | 7.1:-2884053 | MS.gene050864:CDS |
| GCTCAGGGGAAGATCACCGG+TGG | 0.707782 | 7.1:-2884039 | MS.gene050864:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATATTTAAAGAATTAT+TGG | + | chr7.1:2882182-2882201 | None:intergenic | 10.0% |
| !! | ATAATAGAATTAGAGTATAA+CGG | + | chr7.1:2883223-2883242 | None:intergenic | 15.0% |
| !! | ATTAAATATTGTAGCTAAAT+TGG | - | chr7.1:2882264-2882283 | MS.gene050864:intron | 15.0% |
| !! | TATAAGTGCTTAATTAAATT+GGG | + | chr7.1:2881298-2881317 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATATTTGAGAC+CGG | + | chr7.1:2883313-2883332 | None:intergenic | 15.0% |
| !! | AGTAGTACTATATAAAATAC+TGG | - | chr7.1:2883430-2883449 | MS.gene050864:intron | 20.0% |
| !! | ATATCAGAAATAAGTATTAG+TGG | + | chr7.1:2883089-2883108 | None:intergenic | 20.0% |
| !! | ATTGAAGAACTATAATACAT+TGG | - | chr7.1:2882334-2882353 | MS.gene050864:intron | 20.0% |
| !! | CTATAAGTGCTTAATTAAAT+TGG | + | chr7.1:2881299-2881318 | None:intergenic | 20.0% |
| !! | CTATATGAACTAACATAATT+TGG | - | chr7.1:2882903-2882922 | MS.gene050864:intron | 20.0% |
| !! | TACAGATCAAATATCAAAAT+TGG | + | chr7.1:2881186-2881205 | None:intergenic | 20.0% |
| !! | TATACTCTAATTCTATTATC+TGG | - | chr7.1:2883224-2883243 | MS.gene050864:intron | 20.0% |
| !! | TATTATTGTGATTAAAAGAC+TGG | + | chr7.1:2881157-2881176 | None:intergenic | 20.0% |
| !! | TCAATATTCAATTTCAACTA+TGG | - | chr7.1:2882213-2882232 | MS.gene050864:intron | 20.0% |
| !!! | ACTATCATCTACATTATTTT+AGG | + | chr7.1:2882311-2882330 | None:intergenic | 20.0% |
| !!! | CTAATACTTATTTCTGATAT+AGG | - | chr7.1:2883089-2883108 | MS.gene050864:CDS | 20.0% |
| !!! | GATTTTAGTTTTACTGATAT+TGG | - | chr7.1:2881580-2881599 | MS.gene050864:intron | 20.0% |
| !!! | TATTATGTTTTCCCTTTATT+TGG | - | chr7.1:2882382-2882401 | MS.gene050864:intron | 20.0% |
| !!! | TATTTTATATAGTACTACTC+CGG | + | chr7.1:2883429-2883448 | None:intergenic | 20.0% |
| !!! | TTTAGTCTCTTTTTTATTTG+TGG | - | chr7.1:2883255-2883274 | MS.gene050864:intron | 20.0% |
| ! | AACATAATTTGGAGATTACA+AGG | - | chr7.1:2882914-2882933 | MS.gene050864:intron | 25.0% |
| ! | AATAAAATGAGCAACAGAAA+AGG | + | chr7.1:2882148-2882167 | None:intergenic | 25.0% |
| ! | AGAAAAGACTACAATTGTTA+AGG | + | chr7.1:2883159-2883178 | None:intergenic | 25.0% |
| ! | ATTCAATTTCAACTATGGTT+TGG | - | chr7.1:2882218-2882237 | MS.gene050864:intron | 25.0% |
| ! | CATGAAATTAATTACCTCAA+TGG | - | chr7.1:2881255-2881274 | MS.gene050864:intron | 25.0% |
| ! | CATTGAGGTAATTAATTTCA+TGG | + | chr7.1:2881257-2881276 | None:intergenic | 25.0% |
| ! | GCGAATATATAATAACCTAT+TGG | + | chr7.1:2882518-2882537 | None:intergenic | 25.0% |
| ! | TAGAAAACATAAGAACTAAC+AGG | + | chr7.1:2882555-2882574 | None:intergenic | 25.0% |
| ! | TCATATTTACTTGATATGCA+CGG | - | chr7.1:2881701-2881720 | MS.gene050864:intron | 25.0% |
| !! | AAAAGCAACTTTTCCTTTTA+GGG | - | chr7.1:2882958-2882977 | MS.gene050864:intron | 25.0% |
| !! | AAAATTTCTAGAAGCACAAA+AGG | + | chr7.1:2881841-2881860 | None:intergenic | 25.0% |
| !! | ACTATAGAAGTATAGTCTAT+GGG | + | chr7.1:2883060-2883079 | None:intergenic | 25.0% |
| !! | AGCTATAAACCATTTTCATA+AGG | - | chr7.1:2881394-2881413 | MS.gene050864:CDS | 25.0% |
| !! | TCAAACAAAGTTGAAGTATT+TGG | + | chr7.1:2883377-2883396 | None:intergenic | 25.0% |
| !! | TCTTTTGATCATCATTGTAT+TGG | - | chr7.1:2882743-2882762 | MS.gene050864:intron | 25.0% |
| !!! | TATAATACATTGGTGGTTTT+GGG | - | chr7.1:2882344-2882363 | MS.gene050864:intron | 25.0% |
| !!! | TTGTGCTTCTAGAAATTTTA+TGG | - | chr7.1:2881842-2881861 | MS.gene050864:intron | 25.0% |
| !!! | TTTTTGCTTATATTTGAGAC+CGG | - | chr7.1:2883407-2883426 | MS.gene050864:intron | 25.0% |
| AAAAGGTCTACTTACAAATC+AGG | + | chr7.1:2882131-2882150 | None:intergenic | 30.0% | |
| AAAGGTCTACTTACAAATCA+GGG | + | chr7.1:2882130-2882149 | None:intergenic | 30.0% | |
| AACAAAAGGTTTCACATTTC+AGG | + | chr7.1:2883875-2883894 | None:intergenic | 30.0% | |
| AATATTTGTAGCAGCATCTA+TGG | - | chr7.1:2883576-2883595 | MS.gene050864:intron | 30.0% | |
| ACTCTAATTCTATTATCTGG+TGG | - | chr7.1:2883227-2883246 | MS.gene050864:intron | 30.0% | |
| AGATGACATCAAACTTCAAA+GGG | - | chr7.1:2881552-2881571 | MS.gene050864:CDS | 30.0% | |
| ATAAGCTAAAAAACAACTCG+TGG | - | chr7.1:2881439-2881458 | MS.gene050864:CDS | 30.0% | |
| ATACTTTGATGTCGATACTT+CGG | - | chr7.1:2882034-2882053 | MS.gene050864:intron | 30.0% | |
| ATATTTGTAGCAGCATCTAT+GGG | - | chr7.1:2883577-2883596 | MS.gene050864:intron | 30.0% | |
| ATTAAAGATCTACCTCTTCA+CGG | - | chr7.1:2884076-2884095 | MS.gene050864:CDS | 30.0% | |
| ATTTGTGGAAACATCATATG+TGG | - | chr7.1:2883270-2883289 | MS.gene050864:intron | 30.0% | |
| CAATATCTTGTATTGCCAAT+AGG | - | chr7.1:2882500-2882519 | MS.gene050864:intron | 30.0% | |
| CATATTTACTTGATATGCAC+GGG | - | chr7.1:2881702-2881721 | MS.gene050864:intron | 30.0% | |
| GAAGAACTATAATACATTGG+TGG | - | chr7.1:2882337-2882356 | MS.gene050864:intron | 30.0% | |
| TAAGAACTAACAGGTTTACT+TGG | + | chr7.1:2882546-2882565 | None:intergenic | 30.0% | |
| TCATTAAAAGTTCCTCTGAA+TGG | + | chr7.1:2882092-2882111 | None:intergenic | 30.0% | |
| TCCAAGATACCTTATGAAAA+TGG | + | chr7.1:2881406-2881425 | None:intergenic | 30.0% | |
| ! | AATTGTAGTCTTTTCTTGCT+TGG | - | chr7.1:2883163-2883182 | MS.gene050864:intron | 30.0% |
| ! | CAAAAGCAACTTTTCCTTTT+AGG | - | chr7.1:2882957-2882976 | MS.gene050864:intron | 30.0% |
| ! | CAATGTGAAGAAGTATATCT+CGG | - | chr7.1:2882450-2882469 | MS.gene050864:intron | 30.0% |
| ! | CTTTGTTTATGCATATTAGC+CGG | - | chr7.1:2882612-2882631 | MS.gene050864:intron | 30.0% |
| ! | GACTATAGAAGTATAGTCTA+TGG | + | chr7.1:2883061-2883080 | None:intergenic | 30.0% |
| ! | TATAGGAACTGATTCTAACA+TGG | + | chr7.1:2882858-2882877 | None:intergenic | 30.0% |
| ! | TCATGAACAGGATCTTTTTA+GGG | + | chr7.1:2882709-2882728 | None:intergenic | 30.0% |
| ! | TTATTATATTTGAGACCGGA+GGG | + | chr7.1:2883309-2883328 | None:intergenic | 30.0% |
| ! | TTCATGAACAGGATCTTTTT+AGG | + | chr7.1:2882710-2882729 | None:intergenic | 30.0% |
| ! | TTTATTATATTTGAGACCGG+AGG | + | chr7.1:2883310-2883329 | None:intergenic | 30.0% |
| !! | ACCATTTTCATAAGGTATCT+TGG | - | chr7.1:2881402-2881421 | MS.gene050864:CDS | 30.0% |
| !! | CTAAAAGGAAAAGTTGCTTT+TGG | + | chr7.1:2882959-2882978 | None:intergenic | 30.0% |
| !! | CTATAATACATTGGTGGTTT+TGG | - | chr7.1:2882343-2882362 | MS.gene050864:intron | 30.0% |
| !! | TATGTTTTCCCTTTATTTGG+CGG | - | chr7.1:2882385-2882404 | MS.gene050864:intron | 30.0% |
| !! | TCCCTCTAAAGTTAAAAAAC+TGG | + | chr7.1:2883477-2883496 | None:intergenic | 30.0% |
| !!! | AATACTGGTTTTCTAAGAAG+AGG | - | chr7.1:2883445-2883464 | MS.gene050864:intron | 30.0% |
| !!! | GCCAGTTTTTTAACTTTAGA+GGG | - | chr7.1:2883473-2883492 | MS.gene050864:intron | 30.0% |
| !!! | TGCCAGTTTTTTAACTTTAG+AGG | - | chr7.1:2883472-2883491 | MS.gene050864:intron | 30.0% |
| AAGATCCTGTTCATGAAACA+TGG | - | chr7.1:2882713-2882732 | MS.gene050864:intron | 35.0% | |
| AAGTCCTTGTAAGACTGTTT+GGG | + | chr7.1:2881494-2881513 | None:intergenic | 35.0% | |
| AAGTGAACTGAGTATAGTCA+GGG | - | chr7.1:2882637-2882656 | MS.gene050864:intron | 35.0% | |
| ACCATAATTGTACTCAGGTA+TGG | - | chr7.1:2883529-2883548 | MS.gene050864:intron | 35.0% | |
| ACCCATCTGAATATATCCAA+TGG | + | chr7.1:2883921-2883940 | None:intergenic | 35.0% | |
| AGATCCTGTTCATGAAACAT+GGG | - | chr7.1:2882714-2882733 | MS.gene050864:intron | 35.0% | |
| AGCAACTATTAACACCATTG+AGG | + | chr7.1:2881272-2881291 | None:intergenic | 35.0% | |
| AGCTGGAATAAAGACAAACA+GGG | + | chr7.1:2883791-2883810 | None:intergenic | 35.0% | |
| AGGATTACGTATAGACAAAG+AGG | + | chr7.1:2883712-2883731 | None:intergenic | 35.0% | |
| AGTATAACGGTTAGTAGTCA+TGG | + | chr7.1:2883210-2883229 | None:intergenic | 35.0% | |
| ATATATAGCACACAAGCTGA+AGG | - | chr7.1:2883612-2883631 | MS.gene050864:intron | 35.0% | |
| ATGACATAAATCTGGTGACT+TGG | - | chr7.1:2883650-2883669 | MS.gene050864:intron | 35.0% | |
| ATGGGACTATGACATAAATC+TGG | - | chr7.1:2883642-2883661 | MS.gene050864:intron | 35.0% | |
| CAAAACTGGTGCATATTACT+GGG | - | chr7.1:2883016-2883035 | MS.gene050864:CDS | 35.0% | |
| CAAACACTGCACAAAACAAA+AGG | + | chr7.1:2883889-2883908 | None:intergenic | 35.0% | |
| CAAACAGGGAATATCCATAT+AGG | + | chr7.1:2883777-2883796 | None:intergenic | 35.0% | |
| CCCATCTGAATATATCCAAT+GGG | + | chr7.1:2883920-2883939 | None:intergenic | 35.0% | |
| CCCATTGGATATATTCAGAT+GGG | - | chr7.1:2883917-2883936 | MS.gene050864:intron | 35.0% | |
| CCTAAATGCTTGAATGGTAA+CGG | - | chr7.1:2883121-2883140 | MS.gene050864:CDS | 35.0% | |
| CCTATATAGTCACTATTCCA+GGG | - | chr7.1:2882872-2882891 | MS.gene050864:intron | 35.0% | |
| GAATATATCCAATGGGACAA+TGG | + | chr7.1:2883913-2883932 | None:intergenic | 35.0% | |
| GAGATGACATCAAACTTCAA+AGG | - | chr7.1:2881551-2881570 | MS.gene050864:CDS | 35.0% | |
| GCATATTACTGGGACTAAAT+AGG | - | chr7.1:2883026-2883045 | MS.gene050864:CDS | 35.0% | |
| GCTAGTCGATAAATTCAAAC+AGG | - | chr7.1:2881516-2881535 | MS.gene050864:CDS | 35.0% | |
| GGAATTTAGAAAGATGTGAC+TGG | - | chr7.1:2881763-2881782 | MS.gene050864:intron | 35.0% | |
| GTATAGACAAAGAGGAATGA+TGG | + | chr7.1:2883704-2883723 | None:intergenic | 35.0% | |
| GTTCAACTATTCTGCCTATA+TGG | - | chr7.1:2883760-2883779 | MS.gene050864:intron | 35.0% | |
| TAACATGGACAAGTGTTACA+AGG | + | chr7.1:2882843-2882862 | None:intergenic | 35.0% | |
| TAAGTCCTTGTAAGACTGTT+TGG | + | chr7.1:2881495-2881514 | None:intergenic | 35.0% | |
| TCCATACCTGAGTACAATTA+TGG | + | chr7.1:2883533-2883552 | None:intergenic | 35.0% | |
| TCCCATTGGATATATTCAGA+TGG | - | chr7.1:2883916-2883935 | MS.gene050864:intron | 35.0% | |
| TCCTATATAGTCACTATTCC+AGG | - | chr7.1:2882871-2882890 | MS.gene050864:intron | 35.0% | |
| TCTGCATAAAATGAGTCACA+TGG | + | chr7.1:2881927-2881946 | None:intergenic | 35.0% | |
| TGCTGCTACAAATATTAGAG+TGG | + | chr7.1:2883572-2883591 | None:intergenic | 35.0% | |
| TTCATATAGATGTTAGTCCC+TGG | + | chr7.1:2882892-2882911 | None:intergenic | 35.0% | |
| ! | AGATTCAGTTGTGTGTTACT+TGG | + | chr7.1:2881638-2881657 | None:intergenic | 35.0% |
| ! | TCATTTTCAAAACCTGCATC+TGG | - | chr7.1:2881948-2881967 | MS.gene050864:intron | 35.0% |
| ! | TGGTATTTTTCTGTTGCAGT+TGG | - | chr7.1:2884040-2884059 | MS.gene050864:CDS | 35.0% |
| !! | GAAGTATCGACATCAAAGTA+TGG | + | chr7.1:2882035-2882054 | None:intergenic | 35.0% |
| !! | TTCCTTTTAGGGATTCAAAC+CGG | - | chr7.1:2882969-2882988 | MS.gene050864:intron | 35.0% |
| !!! | GATTCACTTTTTCCATTCAG+AGG | - | chr7.1:2882077-2882096 | MS.gene050864:intron | 35.0% |
| AAAATACCATCTGCATCTCG+AGG | + | chr7.1:2881094-2881113 | None:intergenic | 40.0% | |
| AAACCGGGTAGAATGTTGTA+GGG | - | chr7.1:2882985-2883004 | MS.gene050864:CDS | 40.0% | |
| AACTCCCATGTTTCATGAAC+AGG | + | chr7.1:2882721-2882740 | None:intergenic | 40.0% | |
| AAGGAACTGTAAGGGAAACA+TGG | - | chr7.1:2881789-2881808 | MS.gene050864:intron | 40.0% | |
| AATCCCTACAACATTCTACC+CGG | + | chr7.1:2882991-2883010 | None:intergenic | 40.0% | |
| ACAAGCTGAAGGATCAGAAA+TGG | - | chr7.1:2883623-2883642 | MS.gene050864:intron | 40.0% | |
| ACCATTCAAGCATTTAGGAG+TGG | + | chr7.1:2883119-2883138 | None:intergenic | 40.0% | |
| ACTGGAAGAAGGAACTGTAA+GGG | - | chr7.1:2881781-2881800 | MS.gene050864:intron | 40.0% | |
| AGAAAGATGTGACTGGAAGA+AGG | - | chr7.1:2881770-2881789 | MS.gene050864:intron | 40.0% | |
| AGCTCACCATAATTGTACTC+AGG | - | chr7.1:2883524-2883543 | MS.gene050864:intron | 40.0% | |
| AGGAACTGTAAGGGAAACAT+GGG | - | chr7.1:2881790-2881809 | MS.gene050864:intron | 40.0% | |
| ATATTCAGATGGGTGATTGC+AGG | - | chr7.1:2883927-2883946 | MS.gene050864:intron | 40.0% | |
| ATTTGTGGCACTTAACCTTC+GGG | - | chr7.1:2883974-2883993 | MS.gene050864:intron | 40.0% | |
| CAAGCTGAAGGATCAGAAAT+GGG | - | chr7.1:2883624-2883643 | MS.gene050864:intron | 40.0% | |
| CAAGGACTTGAACCAAAACA+AGG | - | chr7.1:2882932-2882951 | MS.gene050864:intron | 40.0% | |
| CATCAAACTTCAAAGGGACT+TGG | - | chr7.1:2881558-2881577 | MS.gene050864:intron | 40.0% | |
| CATTTGTGGCACTTAACCTT+CGG | - | chr7.1:2883973-2883992 | MS.gene050864:intron | 40.0% | |
| CCAAAACTGGTGCATATTAC+TGG | - | chr7.1:2883015-2883034 | MS.gene050864:CDS | 40.0% | |
| CCCTGGAATAGTGACTATAT+AGG | + | chr7.1:2882875-2882894 | None:intergenic | 40.0% | |
| CCGTTACCATTCAAGCATTT+AGG | + | chr7.1:2883124-2883143 | None:intergenic | 40.0% | |
| CCTCAAATACTTCTCTGTAC+CGG | - | chr7.1:2883729-2883748 | MS.gene050864:intron | 40.0% | |
| CTATACTCAGTTCACTTCTC+CGG | + | chr7.1:2882634-2882653 | None:intergenic | 40.0% | |
| CTGATATTGGAGATACTCGA+CGG | - | chr7.1:2881593-2881612 | MS.gene050864:intron | 40.0% | |
| GAAGTGAACTGAGTATAGTC+AGG | - | chr7.1:2882636-2882655 | MS.gene050864:intron | 40.0% | |
| GAGCTGGAATAAAGACAAAC+AGG | + | chr7.1:2883792-2883811 | None:intergenic | 40.0% | |
| GTAGCTAAATTGGTGAGTTG+TGG | - | chr7.1:2882274-2882293 | MS.gene050864:intron | 40.0% | |
| GTAGGGATTAAAGCCAAAAC+TGG | - | chr7.1:2883002-2883021 | MS.gene050864:CDS | 40.0% | |
| GTCTACTTACAAATCAGGGT+TGG | + | chr7.1:2882126-2882145 | None:intergenic | 40.0% | |
| GTTCATGTCAGCAACATTTG+TGG | - | chr7.1:2883959-2883978 | MS.gene050864:intron | 40.0% | |
| GTTTGTCTTTATTCCAGCTC+TGG | - | chr7.1:2883792-2883811 | MS.gene050864:intron | 40.0% | |
| TCCACTCCTAAATGCTTGAA+TGG | - | chr7.1:2883115-2883134 | MS.gene050864:CDS | 40.0% | |
| TGATATTGGAGATACTCGAC+GGG | - | chr7.1:2881594-2881613 | MS.gene050864:intron | 40.0% | |
| TGATGTCATCTCCTCTACTA+TGG | + | chr7.1:2881543-2881562 | None:intergenic | 40.0% | |
| TTCAAACAGGTCCATAGTAG+AGG | - | chr7.1:2881529-2881548 | MS.gene050864:CDS | 40.0% | |
| TTCATGGTGACTAGCAATGA+TGG | + | chr7.1:2881241-2881260 | None:intergenic | 40.0% | |
| TTCTGTCTGTGAATGTCTGA+TGG | - | chr7.1:2881742-2881761 | MS.gene050864:intron | 40.0% | |
| ! | CCAGTAATATGCACCAGTTT+TGG | + | chr7.1:2883018-2883037 | None:intergenic | 40.0% |
| !! | ATACTTCGGATGTTCTAGAG+AGG | - | chr7.1:2882048-2882067 | MS.gene050864:intron | 40.0% |
| !! | TCCTTTTAGGGATTCAAACC+GGG | - | chr7.1:2882970-2882989 | MS.gene050864:intron | 40.0% |
| !!! | CATTATTTTAGGACTGCCAG+TGG | + | chr7.1:2882300-2882319 | None:intergenic | 40.0% |
| !!! | GTTGCTTTTGGTCCTTGTTT+TGG | + | chr7.1:2882947-2882966 | None:intergenic | 40.0% |
| !!! | TGGTCTGCTGGTTTGTTTTA+TGG | - | chr7.1:2883670-2883689 | MS.gene050864:intron | 40.0% |
| AATAGTTGAACAAGTCCCGC+CGG | + | chr7.1:2883751-2883770 | None:intergenic | 45.0% | |
| AGAGTGGTGCAAATCCAGAA+TGG | + | chr7.1:2883556-2883575 | None:intergenic | 45.0% | |
| AGGTGGTTCTTCATTGTTGC+TGG | - | chr7.1:2884020-2884039 | MS.gene050864:CDS | 45.0% | |
| ATATCATGTCGGCAGGTGAA+AGG | - | chr7.1:2884000-2884019 | MS.gene050864:intron | 45.0% | |
| ATTTCCTCCATCACAAGCTC+AGG | - | chr7.1:2881042-2881061 | MS.gene050864:CDS | 45.0% | |
| CAAACCGGGTAGAATGTTGT+AGG | - | chr7.1:2882984-2883003 | MS.gene050864:CDS | 45.0% | |
| CAAATACTTCTCTGTACCGG+CGG | - | chr7.1:2883732-2883751 | MS.gene050864:intron | 45.0% | |
| CTCTCCCAAACAGTCTTACA+AGG | - | chr7.1:2881487-2881506 | MS.gene050864:CDS | 45.0% | |
| GACCGGAGGGAGTAAAAATT+AGG | + | chr7.1:2883296-2883315 | None:intergenic | 45.0% | |
| GACTGGAAGAAGGAACTGTA+AGG | - | chr7.1:2881780-2881799 | MS.gene050864:intron | 45.0% | |
| GTGTTTGTCCATTGTCCCAT+TGG | - | chr7.1:2883902-2883921 | MS.gene050864:intron | 45.0% | |
| TACTCAGGTATGGACCATTC+TGG | - | chr7.1:2883539-2883558 | MS.gene050864:intron | 45.0% | |
| TCATCAGAAGAACCAGATGC+AGG | + | chr7.1:2881963-2881982 | None:intergenic | 45.0% | |
| TCTTCTGATGAACCTCAGCA+GGG | - | chr7.1:2881972-2881991 | MS.gene050864:intron | 45.0% | |
| TTCTTCTGATGAACCTCAGC+AGG | - | chr7.1:2881971-2881990 | MS.gene050864:intron | 45.0% | |
| TTTCCTCCATCACAAGCTCA+GGG | - | chr7.1:2881043-2881062 | MS.gene050864:CDS | 45.0% | |
| ! | AAATACTTCTCTGTACCGGC+GGG | - | chr7.1:2883733-2883752 | MS.gene050864:intron | 45.0% |
| ! | ACCCGGTTTGAATCCCTAAA+AGG | + | chr7.1:2882974-2882993 | None:intergenic | 45.0% |
| ! | GGCCTAATTTTTACTCCCTC+CGG | - | chr7.1:2883291-2883310 | MS.gene050864:intron | 45.0% |
| !! | CCGGTACAGAGAAGTATTTG+AGG | + | chr7.1:2883732-2883751 | None:intergenic | 45.0% |
| !! | TCTGTTGCAGTTGGCTTTAG+CGG | - | chr7.1:2884049-2884068 | MS.gene050864:CDS | 45.0% |
| AATTGGTGAGTTGTGGCCAC+TGG | - | chr7.1:2882281-2882300 | MS.gene050864:intron | 50.0% | |
| ATACCATCTGCATCTCGAGG+TGG | + | chr7.1:2881091-2881110 | None:intergenic | 50.0% | |
| ATCTTCCCCTGAGCTTGTGA+TGG | + | chr7.1:2881052-2881071 | None:intergenic | 50.0% | |
| CCAGCTCACCGCCAAATAAA+GGG | + | chr7.1:2882396-2882415 | None:intergenic | 50.0% | |
| CCTTCGGGCACATATCATGT+CGG | - | chr7.1:2883989-2884008 | MS.gene050864:intron | 50.0% | |
| GAGAAGCAACTTACCAGAGC+TGG | + | chr7.1:2883808-2883827 | None:intergenic | 50.0% | |
| TTCCTCCATCACAAGCTCAG+GGG | - | chr7.1:2881044-2881063 | MS.gene050864:CDS | 50.0% | |
| ! | CCTTTATTTGGCGGTGAGCT+GGG | - | chr7.1:2882394-2882413 | MS.gene050864:intron | 50.0% |
| ! | CTTTATTTGGCGGTGAGCTG+GGG | - | chr7.1:2882395-2882414 | MS.gene050864:intron | 50.0% |
| ! | GTCTTTTCTTGCTTGGCTGC+TGG | - | chr7.1:2883170-2883189 | MS.gene050864:intron | 50.0% |
| !! | AATCTGGTGACTTGGTCTGC+TGG | - | chr7.1:2883658-2883677 | MS.gene050864:intron | 50.0% |
| ATGAACCTCAGCAGGGTGGT+TGG | - | chr7.1:2881979-2881998 | MS.gene050864:intron | 55.0% | |
| CAAGCTCAGGGGAAGATCAC+CGG | - | chr7.1:2881055-2881074 | MS.gene050864:CDS | 55.0% | |
| CAGATGGGTGATTGCAGGTG+TGG | - | chr7.1:2883932-2883951 | MS.gene050864:intron | 55.0% | |
| CCCAGCTCACCGCCAAATAA+AGG | + | chr7.1:2882397-2882416 | None:intergenic | 55.0% | |
| CCGACATGATATGTGCCCGA+AGG | + | chr7.1:2883992-2884011 | None:intergenic | 55.0% | |
| GGAAGATCACCGGTGGTTCT+AGG | - | chr7.1:2881065-2881084 | MS.gene050864:CDS | 55.0% | |
| TCATGTCGGCAGGTGAAAGG+TGG | - | chr7.1:2884003-2884022 | MS.gene050864:intron | 55.0% | |
| TCTGATGAACCTCAGCAGGG+TGG | - | chr7.1:2881975-2881994 | MS.gene050864:intron | 55.0% | |
| TTCCCCTGAGCTTGTGATGG+AGG | + | chr7.1:2881049-2881068 | None:intergenic | 55.0% | |
| ! | CCCTTTATTTGGCGGTGAGC+TGG | - | chr7.1:2882393-2882412 | MS.gene050864:intron | 55.0% |
| AGGCCACCTCGAGATGCAGA+TGG | - | chr7.1:2881085-2881104 | MS.gene050864:CDS | 60.0% | |
| CGGGCACATATCATGTCGGC+AGG | - | chr7.1:2883993-2884012 | MS.gene050864:intron | 60.0% | |
| GGGTGATTGCAGGTGTGGCA+GGG | - | chr7.1:2883937-2883956 | MS.gene050864:intron | 60.0% | |
| TCGAGGTGGCCTAGAACCAC+CGG | + | chr7.1:2881077-2881096 | None:intergenic | 60.0% | |
| TGGGTGATTGCAGGTGTGGC+AGG | - | chr7.1:2883936-2883955 | MS.gene050864:intron | 60.0% | |
| !! | CTCAGCAGGGTGGTTGGCTT+CGG | - | chr7.1:2881985-2882004 | MS.gene050864:intron | 60.0% |
| CGAAGCCAACCACCCTGCTG+AGG | + | chr7.1:2881987-2882006 | None:intergenic | 65.0% | |
| GCTCAGGGGAAGATCACCGG+TGG | - | chr7.1:2881058-2881077 | MS.gene050864:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 2881010 | 2884109 | 2881010 | ID=MS.gene050864 |
| chr7.1 | mRNA | 2881010 | 2884109 | 2881010 | ID=MS.gene050864.t1;Parent=MS.gene050864 |
| chr7.1 | exon | 2884013 | 2884109 | 2884013 | ID=MS.gene050864.t1.exon1;Parent=MS.gene050864.t1 |
| chr7.1 | CDS | 2884013 | 2884109 | 2884013 | ID=cds.MS.gene050864.t1;Parent=MS.gene050864.t1 |
| chr7.1 | exon | 2882984 | 2883173 | 2882984 | ID=MS.gene050864.t1.exon2;Parent=MS.gene050864.t1 |
| chr7.1 | CDS | 2882984 | 2883173 | 2882984 | ID=cds.MS.gene050864.t1;Parent=MS.gene050864.t1 |
| chr7.1 | exon | 2881306 | 2881573 | 2881306 | ID=MS.gene050864.t1.exon3;Parent=MS.gene050864.t1 |
| chr7.1 | CDS | 2881306 | 2881573 | 2881306 | ID=cds.MS.gene050864.t1;Parent=MS.gene050864.t1 |
| chr7.1 | exon | 2881010 | 2881216 | 2881010 | ID=MS.gene050864.t1.exon4;Parent=MS.gene050864.t1 |
| chr7.1 | CDS | 2881010 | 2881216 | 2881010 | ID=cds.MS.gene050864.t1;Parent=MS.gene050864.t1 |
| Gene Sequence |
| Protein sequence |
