Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40336.t1 | XP_013461937.1 | 97.5 | 845 | 16 | 2 | 23 | 863 | 1 | 844 | 0.00E+00 | 1584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40336.t1 | Q9LDK9 | 79.0 | 843 | 173 | 4 | 23 | 863 | 1 | 841 | 0.0e+00 | 1298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40336.t1 | A0A072V2B0 | 97.5 | 845 | 16 | 2 | 23 | 863 | 1 | 844 | 0.0e+00 | 1584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050809 | MS.gene40336 | 0.804768 | 1.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCGGCTTCTGCAGTTTC+TGG | 0.097421 | 3.4:+94712589 | MS.gene40336:CDS |
| CAATCAGCTTTGTCCAAATT+TGG | 0.125872 | 3.4:+94716621 | MS.gene40336:CDS |
| GAGTATTTGGTTGGGCCTTT+AGG | 0.153079 | 3.4:+94708391 | MS.gene40336:CDS |
| TGTCTGCTTTACAAGAAATT+TGG | 0.157651 | 3.4:+94710123 | MS.gene40336:CDS |
| GTTTCAGGGCAAACCAAATT+TGG | 0.200113 | 3.4:-94716634 | None:intergenic |
| ATCAAATGCTTCAACGTTTC+TGG | 0.203616 | 3.4:-94708517 | None:intergenic |
| TGGAAAGTCTGGTTGAAAAT+TGG | 0.212595 | 3.4:+94712975 | MS.gene40336:CDS |
| CTGCCTTAGCCTTAGGTTCT+TGG | 0.226571 | 3.4:-94712895 | None:intergenic |
| CCAGGATCCAGTACAGCTTT+TGG | 0.231595 | 3.4:-94715952 | None:intergenic |
| TATAATGCTCCTTCCTATAA+TGG | 0.233272 | 3.4:+94715775 | MS.gene40336:CDS |
| CCTGCACTTGACTTTATCTA+TGG | 0.262839 | 3.4:+94710846 | MS.gene40336:CDS |
| AGTATTTGGTTGGGCCTTTA+GGG | 0.273406 | 3.4:+94708392 | MS.gene40336:CDS |
| TTCACAACCGCTTGCAGATT+TGG | 0.280848 | 3.4:+94715816 | MS.gene40336:CDS |
| TTGGTTGGGCCTTTAGGGTC+AGG | 0.291482 | 3.4:+94708397 | MS.gene40336:CDS |
| CTCTGAGGTGGTTGACTCTA+AGG | 0.294624 | 3.4:-94710147 | None:intergenic |
| ATTATAGGAAGGAGCATTAT+AGG | 0.298629 | 3.4:-94715773 | None:intergenic |
| CGAATTGATTCCCTTGCAAT+TGG | 0.305678 | 3.4:-94712518 | None:intergenic |
| GTTTGCTACGTGCAGCATTA+AGG | 0.317331 | 3.4:+94710672 | MS.gene40336:intron |
| CATATGATGGCTCGTTATAC+TGG | 0.328980 | 3.4:-94712236 | None:intergenic |
| CAAACCTCTGATAAGGATAT+TGG | 0.329700 | 3.4:-94716003 | None:intergenic |
| GGCGAACTTGGTGGAGTATT+TGG | 0.333179 | 3.4:+94708378 | MS.gene40336:CDS |
| CCCAGTGCTTTCTGAGTCTC+GGG | 0.337763 | 3.4:-94714080 | None:intergenic |
| ATTGATGTTTCGTCTCTCTT+TGG | 0.342308 | 3.4:+94708166 | MS.gene40336:CDS |
| TAGAAGCCTGTAATAAAATA+AGG | 0.343419 | 3.4:-94714284 | None:intergenic |
| AAAGATGATGTGAGAGATAC+TGG | 0.345708 | 3.4:+94715736 | MS.gene40336:CDS |
| AATACGGAAACTGCTTGTTT+TGG | 0.348511 | 3.4:-94714346 | None:intergenic |
| CAAGATTGTATTGCTGTTGT+AGG | 0.357677 | 3.4:+94712851 | MS.gene40336:CDS |
| TTACAGCTACGGCAGCTTGC+TGG | 0.364785 | 3.4:+94708070 | MS.gene40336:CDS |
| GGAAAGTCTGGTTGAAAATT+GGG | 0.365049 | 3.4:+94712976 | MS.gene40336:CDS |
| TGAAGGGGCAGACCCATTAT+AGG | 0.369778 | 3.4:-94715788 | None:intergenic |
| GCCTTTAGGGTCAGGGTTGA+AGG | 0.371889 | 3.4:+94708405 | MS.gene40336:CDS |
| TCCCAGTGCTTTCTGAGTCT+CGG | 0.372039 | 3.4:-94714081 | None:intergenic |
| AGAATTGCATAAGATTGTTC+CGG | 0.387819 | 3.4:-94712144 | None:intergenic |
| CAAATTTGGACAAAGCTGAT+TGG | 0.388207 | 3.4:-94716620 | None:intergenic |
| CAATTGCAAGGGAATCAATT+CGG | 0.388565 | 3.4:+94712519 | MS.gene40336:CDS |
| CAAGTCACAGATTAAAATAA+AGG | 0.389674 | 3.4:+94716557 | MS.gene40336:CDS |
| TGATCCGAGGACTGGCATTA+AGG | 0.389716 | 3.4:+94708335 | MS.gene40336:CDS |
| GCTTGCTGGGAGTCGAGCTC+CGG | 0.391372 | 3.4:+94708084 | MS.gene40336:CDS |
| TTCAGAAGGTAATAAACAAT+TGG | 0.400938 | 3.4:-94710206 | None:intergenic |
| GGAGGATCTGATTAGATTGC+GGG | 0.401295 | 3.4:-94707573 | None:intergenic |
| CTGGGAGCTGCACTGGCCGC+TGG | 0.402711 | 3.4:+94714098 | MS.gene40336:CDS |
| TTCTTACATGTTCACTGATA+AGG | 0.403515 | 3.4:+94715582 | MS.gene40336:CDS |
| CCTCGCCGTCGCAAACCGTC+CGG | 0.405855 | 3.4:+94707594 | MS.gene40336:CDS |
| AACTTGGTGGAGTATTTGGT+TGG | 0.409463 | 3.4:+94708382 | MS.gene40336:CDS |
| CTCGCCGTCGCAAACCGTCC+GGG | 0.415976 | 3.4:+94707595 | MS.gene40336:CDS |
| TAGTCCGAGGAAAATATATA+TGG | 0.418519 | 3.4:-94712198 | None:intergenic |
| ATGAGAGCTGCCTTAGCCTT+AGG | 0.418866 | 3.4:-94712902 | None:intergenic |
| CTGGCACATTTCAGCAGAAA+TGG | 0.420622 | 3.4:+94715971 | MS.gene40336:CDS |
| GAAAGTAACACCTATGAGAT+AGG | 0.421261 | 3.4:+94712300 | MS.gene40336:CDS |
| TCAAAGGGATTGTAAGGATC+AGG | 0.422298 | 3.4:+94708306 | MS.gene40336:CDS |
| GATTGCAGGATGTTCATGAT+AGG | 0.426072 | 3.4:+94714260 | MS.gene40336:intron |
| TTGTTTATTACCTTCTGAAT+CGG | 0.426616 | 3.4:+94710210 | MS.gene40336:CDS |
| GAAAGCACTGGGAGCTGCAC+TGG | 0.427199 | 3.4:+94714091 | MS.gene40336:CDS |
| ATAATGCTCCTTCCTATAAT+GGG | 0.428702 | 3.4:+94715776 | MS.gene40336:CDS |
| GTCAGGACGGTGGCAGTAAT+CGG | 0.429251 | 3.4:+94708442 | MS.gene40336:CDS |
| CATGCTGTAGTCTATCTTCA+AGG | 0.433221 | 3.4:-94710786 | None:intergenic |
| CTATGTTACGTCTGAAGCTC+TGG | 0.434441 | 3.4:+94712625 | MS.gene40336:CDS |
| GGCAGCTCTCATATGGATGC+TGG | 0.436064 | 3.4:+94712913 | MS.gene40336:CDS |
| GTGATATCAAACATGACTAT+AGG | 0.444966 | 3.4:+94708142 | MS.gene40336:CDS |
| CTGATTAGATTGCGGGGTGC+AGG | 0.445755 | 3.4:-94707566 | None:intergenic |
| TGGTTGGGCCTTTAGGGTCA+GGG | 0.446084 | 3.4:+94708398 | MS.gene40336:CDS |
| CCTCAACCCAAAAGCTGTAC+TGG | 0.447071 | 3.4:+94715945 | MS.gene40336:CDS |
| AGGCTAAGGCAGCTCTCATA+TGG | 0.449590 | 3.4:+94712906 | MS.gene40336:CDS |
| GCAGTTTCTGGAGATGGAAA+AGG | 0.450968 | 3.4:+94712601 | MS.gene40336:CDS |
| CTGTCTATTAGTGCGGAATC+CGG | 0.457717 | 3.4:+94715646 | MS.gene40336:CDS |
| TCCGTATGTCTTGGAAAGTC+TGG | 0.465126 | 3.4:+94712964 | MS.gene40336:CDS |
| TACAGCTACGGCAGCTTGCT+GGG | 0.465832 | 3.4:+94708071 | MS.gene40336:CDS |
| TTCGTCTCTCTTTGGTGAGA+TGG | 0.466707 | 3.4:+94708174 | MS.gene40336:CDS |
| AGAATGCCTGTGATGAGCTT+TGG | 0.467508 | 3.4:-94716587 | None:intergenic |
| CGCAGGAACAACAGAATCTC+CGG | 0.469614 | 3.4:-94715665 | None:intergenic |
| TTCAAAGCAAACCTCTGATA+AGG | 0.470543 | 3.4:-94716010 | None:intergenic |
| AGGGAATCAATTCGGGCTGT+TGG | 0.471812 | 3.4:+94712527 | MS.gene40336:CDS |
| TCAAGTGAGCTCAGGAAGTC+CGG | 0.472287 | 3.4:+94712125 | MS.gene40336:CDS |
| CAATGCTTGGCTAGTCGTGC+TGG | 0.472618 | 3.4:-94715851 | None:intergenic |
| ACTTGGTGGAGTATTTGGTT+GGG | 0.475411 | 3.4:+94708383 | MS.gene40336:CDS |
| TTCTAAGAAAATATCCTCAA+TGG | 0.478818 | 3.4:+94712825 | MS.gene40336:CDS |
| GAATTGATTCCCTTGCAATT+GGG | 0.478912 | 3.4:-94712517 | None:intergenic |
| TAGCATAGTTTCCAACATAC+AGG | 0.481690 | 3.4:-94708243 | None:intergenic |
| CTCTTAACTCAAGTGAGCTC+AGG | 0.486123 | 3.4:+94712117 | MS.gene40336:CDS |
| GCTTCTGCAGTTTCTGGAGA+TGG | 0.486335 | 3.4:+94712595 | MS.gene40336:CDS |
| CATTAAGGAATTTAGTGAAT+GGG | 0.486684 | 3.4:+94710687 | MS.gene40336:CDS |
| AAACTATGCTAAGGTTAATC+CGG | 0.489948 | 3.4:+94708255 | MS.gene40336:CDS |
| GCTCTGAGTATCAGCAAATA+CGG | 0.491058 | 3.4:-94714362 | None:intergenic |
| TTCACTTCGAGTGGCGAACT+TGG | 0.491152 | 3.4:+94708366 | MS.gene40336:CDS |
| TGACTTGCAAACGCCTCCTC+GGG | 0.491439 | 3.4:-94707524 | None:intergenic |
| TCAATACAGTGCATTGCATC+CGG | 0.492293 | 3.4:+94716438 | MS.gene40336:CDS |
| CACCTCAGAGGAAGCAGCTA+GGG | 0.493233 | 3.4:+94710160 | MS.gene40336:CDS |
| AAGTCAACTTCCAGTGGCTA+TGG | 0.495420 | 3.4:+94707541 | MS.gene40336:CDS |
| CTTGCTGGGAGTCGAGCTCC+GGG | 0.495428 | 3.4:+94708085 | MS.gene40336:CDS |
| TTTGTCTGTTGTATACCAAA+AGG | 0.496811 | 3.4:+94714423 | MS.gene40336:CDS |
| TCTAAGCCACCTGCATCTCT+TGG | 0.497035 | 3.4:+94712164 | MS.gene40336:CDS |
| TTGACTTGCAAACGCCTCCT+CGG | 0.497692 | 3.4:-94707525 | None:intergenic |
| AATATTTCACTGTTATCTGA+TGG | 0.500382 | 3.4:-94710748 | None:intergenic |
| GAGTTACTTACCTATCTCAT+AGG | 0.500850 | 3.4:-94712310 | None:intergenic |
| GTCAATGATGCAATTGCAAG+AGG | 0.504606 | 3.4:-94716378 | None:intergenic |
| GCATTAAGGAATTTAGTGAA+TGG | 0.506177 | 3.4:+94710686 | MS.gene40336:intron |
| CCAAAAGCTGTACTGGATCC+TGG | 0.506654 | 3.4:+94715952 | MS.gene40336:CDS |
| GCAGCTCTCATATGGATGCT+GGG | 0.507243 | 3.4:+94712914 | MS.gene40336:CDS |
| TCGCCGTCGCAAACCGTCCG+GGG | 0.509589 | 3.4:+94707596 | MS.gene40336:CDS |
| AAGATTGTATTGCTGTTGTA+GGG | 0.514619 | 3.4:+94712852 | MS.gene40336:CDS |
| ACTTCGAGTGGCGAACTTGG+TGG | 0.516354 | 3.4:+94708369 | MS.gene40336:CDS |
| AATTGCAAGGGAATCAATTC+GGG | 0.518278 | 3.4:+94712520 | MS.gene40336:CDS |
| TATGGCTGATGTACATCAGC+AGG | 0.521975 | 3.4:+94710864 | MS.gene40336:CDS |
| ATCGTCAAAAGAGCAAGATC+CGG | 0.522124 | 3.4:-94708274 | None:intergenic |
| GGTGCAGGAGCCATAGCCAC+TGG | 0.522250 | 3.4:-94707551 | None:intergenic |
| TGCAAATGGTGCTGTTGTCT+TGG | 0.522927 | 3.4:+94710807 | MS.gene40336:CDS |
| GATCATCAATTGCCAATGCT+TGG | 0.526886 | 3.4:-94715864 | None:intergenic |
| AGAACTTGAAATTAGGAGAC+TGG | 0.528548 | 3.4:-94716464 | None:intergenic |
| CCCGAGACTCAGAAAGCACT+GGG | 0.529321 | 3.4:+94714080 | MS.gene40336:CDS |
| TCCTTCAACCCTGACCCTAA+AGG | 0.529512 | 3.4:-94708406 | None:intergenic |
| GATAGACTACAGCATGCAAA+TGG | 0.530107 | 3.4:+94710793 | MS.gene40336:CDS |
| AGGATAATAATAGTTATGTC+AGG | 0.535717 | 3.4:+94708425 | MS.gene40336:CDS |
| CCCCGAGACTCAGAAAGCAC+TGG | 0.536714 | 3.4:+94714079 | MS.gene40336:CDS |
| GATCTCACTTTCTTCAAAGA+CGG | 0.537183 | 3.4:+94707491 | None:intergenic |
| TGTTGTTCCTGCGCAGAGAG+TGG | 0.538852 | 3.4:+94715675 | MS.gene40336:CDS |
| ATTGCAGGATGTTCATGATA+GGG | 0.541499 | 3.4:+94714261 | MS.gene40336:intron |
| AACTCCTTAATGCCAGTCCT+CGG | 0.542152 | 3.4:-94708339 | None:intergenic |
| CAACAATGTCCAAGAACCTA+AGG | 0.542710 | 3.4:+94712886 | MS.gene40336:CDS |
| CATTTCTGCTGAAATGTGCC+AGG | 0.542817 | 3.4:-94715970 | None:intergenic |
| CTCTTAGAGTCATCAGTACC+CGG | 0.546509 | 3.4:-94708103 | None:intergenic |
| CCACCTCAGAGGAAGCAGCT+AGG | 0.546816 | 3.4:+94710159 | MS.gene40336:CDS |
| GGATCCGATGATCCGAGGAC+TGG | 0.547606 | 3.4:+94708327 | MS.gene40336:CDS |
| AAAATGTGTTACCTGTATGT+TGG | 0.548280 | 3.4:+94708232 | MS.gene40336:CDS |
| AATGCCAGTCCTCGGATCAT+CGG | 0.548429 | 3.4:-94708331 | None:intergenic |
| GCGGTTGTGAAGCTGCTGAA+GGG | 0.548854 | 3.4:-94715804 | None:intergenic |
| CTGATCTAAAATTACAGCTA+CGG | 0.550000 | 3.4:+94708059 | MS.gene40336:CDS |
| CAATCCTTACCTGAGTATCC+TGG | 0.550303 | 3.4:-94708549 | None:intergenic |
| ACCAGACTTTCCAAGACATA+CGG | 0.552347 | 3.4:-94712965 | None:intergenic |
| ACAATGTCTTGTGATGGAAT+TGG | 0.555303 | 3.4:+94710711 | MS.gene40336:CDS |
| CCAGTGCTTTCTGAGTCTCG+GGG | 0.555690 | 3.4:-94714079 | None:intergenic |
| ATGTGCCGTAGGAGTGCATT+GGG | 0.556487 | 3.4:-94716405 | None:intergenic |
| CTGAAAACTCAAATGTCCCT+CGG | 0.557020 | 3.4:-94715609 | None:intergenic |
| CACGCATTACCAAGAGATGC+AGG | 0.558649 | 3.4:-94712173 | None:intergenic |
| TTTGCCTCCACTCTCTGCGC+AGG | 0.558741 | 3.4:-94715682 | None:intergenic |
| CGGGTACTGATGACTCTAAG+AGG | 0.560686 | 3.4:+94708104 | MS.gene40336:CDS |
| GAGTTTGTGTTCACTTCGAG+TGG | 0.560907 | 3.4:+94708357 | MS.gene40336:CDS |
| GCATTTGATGCTCAATGACC+AGG | 0.563623 | 3.4:+94708531 | MS.gene40336:CDS |
| CCATAGATAAAGTCAAGTGC+AGG | 0.564762 | 3.4:-94710846 | None:intergenic |
| GAAAAGATTACCGATTCAGA+AGG | 0.567189 | 3.4:-94710220 | None:intergenic |
| TTGGCAATTGATGATCTGCT+TGG | 0.567360 | 3.4:+94715871 | MS.gene40336:CDS |
| AGCTCACTTGAGTTAAGAGA+GGG | 0.567475 | 3.4:-94712113 | None:intergenic |
| TGTCCAAGAACCTAAGGCTA+AGG | 0.572102 | 3.4:+94712892 | MS.gene40336:CDS |
| GCTCAATGACCAGGATACTC+AGG | 0.572468 | 3.4:+94708540 | MS.gene40336:CDS |
| CGGTTGTGAAGCTGCTGAAG+GGG | 0.573044 | 3.4:-94715803 | None:intergenic |
| CATGTGCCGTAGGAGTGCAT+TGG | 0.574006 | 3.4:-94716406 | None:intergenic |
| AGCGGTTGTGAAGCTGCTGA+AGG | 0.575249 | 3.4:-94715805 | None:intergenic |
| GCATGATGCTCCGTATGTCT+TGG | 0.576281 | 3.4:+94712955 | MS.gene40336:CDS |
| TTTGGGTTGAGGGTCAACGG+GGG | 0.576858 | 3.4:-94715934 | None:intergenic |
| CTCCCTAGCTGCTTCCTCTG+AGG | 0.578498 | 3.4:-94710162 | None:intergenic |
| TTATCAGTGAACATGTAAGA+AGG | 0.579603 | 3.4:-94715580 | None:intergenic |
| CAGCTCTCATATGGATGCTG+GGG | 0.579778 | 3.4:+94712915 | MS.gene40336:CDS |
| GTTATCTGATGGAATGTACT+TGG | 0.582108 | 3.4:-94710737 | None:intergenic |
| ATGTTGACATCCCAATTGCA+AGG | 0.584452 | 3.4:+94712507 | MS.gene40336:CDS |
| CCTAGCTGCTTCCTCTGAGG+TGG | 0.585891 | 3.4:-94710159 | None:intergenic |
| ATGTCAATGCTATTGTTGAT+CGG | 0.587080 | 3.4:+94712573 | MS.gene40336:CDS |
| TGATGACCAAAGCTCATCAC+AGG | 0.588639 | 3.4:+94716581 | MS.gene40336:CDS |
| GACGGTTTGCGACGGCGAGG+AGG | 0.589532 | 3.4:-94707591 | None:intergenic |
| GTATGTTGGAAACTATGCTA+AGG | 0.594327 | 3.4:+94708246 | MS.gene40336:CDS |
| CGCCGTCGCAAACCGTCCGG+GGG | 0.595741 | 3.4:+94707597 | MS.gene40336:CDS |
| TAAGAGGGATCTTTACAAGA+AGG | 0.601150 | 3.4:+94708120 | MS.gene40336:CDS |
| ATGTCTTGTGATGGAATTGG+TGG | 0.601765 | 3.4:+94710714 | MS.gene40336:CDS |
| CAGCACGACTAGCCAAGCAT+TGG | 0.603702 | 3.4:+94715852 | MS.gene40336:CDS |
| AGGAGGATCTGATTAGATTG+CGG | 0.614689 | 3.4:-94707574 | None:intergenic |
| GAAATTAGGAGACTGGCCGC+CGG | 0.615981 | 3.4:-94716457 | None:intergenic |
| ATGGGCACAATGTCTTGTGA+TGG | 0.620096 | 3.4:+94710705 | MS.gene40336:CDS |
| ACTACCAATATCCTTATCAG+AGG | 0.623846 | 3.4:+94715999 | MS.gene40336:CDS |
| CAGTGCTTTCTGAGTCTCGG+GGG | 0.624458 | 3.4:-94714078 | None:intergenic |
| AATGACTTTGCATGTGCCGT+AGG | 0.625693 | 3.4:-94716416 | None:intergenic |
| TGTTGACATCCCAATTGCAA+GGG | 0.626270 | 3.4:+94712508 | MS.gene40336:CDS |
| CGACTCCCAATGCACTCCTA+CGG | 0.627621 | 3.4:+94716400 | MS.gene40336:CDS |
| GTGAGAGATACTGGAAGCAA+TGG | 0.629878 | 3.4:+94715745 | MS.gene40336:CDS |
| GAGCTCACTTGAGTTAAGAG+AGG | 0.630893 | 3.4:-94712114 | None:intergenic |
| GAAAATGCCAAATCTGCAAG+CGG | 0.631748 | 3.4:-94715823 | None:intergenic |
| AGACGGCGCGCAATTTCCCG+AGG | 0.632007 | 3.4:+94707508 | MS.gene40336:CDS |
| GCTTCTACAACACAATGTAT+CGG | 0.632864 | 3.4:+94714300 | MS.gene40336:CDS |
| GGGTACTGATGACTCTAAGA+GGG | 0.633805 | 3.4:+94708105 | MS.gene40336:CDS |
| GAGAGTGGAGGCAAATGACA+AGG | 0.634383 | 3.4:+94715690 | MS.gene40336:CDS |
| ATCTGCATCAATACACGTGG+AGG | 0.639042 | 3.4:-94708491 | None:intergenic |
| GGGGCAGACCCATTATAGGA+AGG | 0.639597 | 3.4:-94715784 | None:intergenic |
| ATACAATCTTGACTCCATTG+AGG | 0.643764 | 3.4:-94712839 | None:intergenic |
| ATAGAAGTGTTTGTAGTCCG+AGG | 0.645673 | 3.4:-94712211 | None:intergenic |
| TGTTCCTGCGCAGAGAGTGG+AGG | 0.648267 | 3.4:+94715678 | MS.gene40336:CDS |
| GATCAGGATCCGATGATCCG+AGG | 0.649993 | 3.4:+94708322 | MS.gene40336:CDS |
| TCAATGATGCAATTGCAAGA+GGG | 0.655935 | 3.4:-94716377 | None:intergenic |
| GTTTGCAAGTCAACTTCCAG+TGG | 0.657579 | 3.4:+94707535 | MS.gene40336:CDS |
| GTGAAAATCAGCAAGACCAG+CGG | 0.660650 | 3.4:-94714114 | None:intergenic |
| TAATAATAGTTATGTCAGGA+CGG | 0.660766 | 3.4:+94708429 | MS.gene40336:CDS |
| TGTATCGGTGGCTGAGAGTG+TGG | 0.662667 | 3.4:+94714315 | MS.gene40336:CDS |
| TGGCAATCTGTCTATTAGTG+CGG | 0.662854 | 3.4:+94715639 | MS.gene40336:CDS |
| CGGCGCGCAATTTCCCGAGG+AGG | 0.670429 | 3.4:+94707511 | MS.gene40336:CDS |
| TCTACAACACAATGTATCGG+TGG | 0.672727 | 3.4:+94714303 | MS.gene40336:CDS |
| AGTGCTTTCTGAGTCTCGGG+GGG | 0.673467 | 3.4:-94714077 | None:intergenic |
| TCTGGTTGAAAATTGGGACG+AGG | 0.674693 | 3.4:+94712982 | MS.gene40336:CDS |
| ATACAGTGCATTGCATCCGG+CGG | 0.681832 | 3.4:+94716441 | MS.gene40336:CDS |
| AAAATCTGCATCAATACACG+TGG | 0.682353 | 3.4:-94708494 | None:intergenic |
| GGACGAGGAGCATTCTGCCG+AGG | 0.683462 | 3.4:+94712997 | MS.gene40336:CDS |
| CTTAGAGTCAACCACCTCAG+AGG | 0.685984 | 3.4:+94710148 | MS.gene40336:CDS |
| GAGGATCTGATTAGATTGCG+GGG | 0.702782 | 3.4:-94707572 | None:intergenic |
| AGCTCTCATATGGATGCTGG+GGG | 0.703952 | 3.4:+94712916 | MS.gene40336:CDS |
| GGATCTGCTTCTAAGTACCA+CGG | 0.710539 | 3.4:+94715711 | MS.gene40336:CDS |
| CCGGACGGTTTGCGACGGCG+AGG | 0.710868 | 3.4:-94707594 | None:intergenic |
| TAATAGTTATGTCAGGACGG+TGG | 0.728993 | 3.4:+94708432 | MS.gene40336:CDS |
| GCATTACCAAGAGATGCAGG+TGG | 0.740701 | 3.4:-94712170 | None:intergenic |
| TCACTGATAAGGAACACCGA+GGG | 0.741366 | 3.4:+94715593 | MS.gene40336:CDS |
| GCTCACTTGAGTTAAGAGAG+GGG | 0.755910 | 3.4:-94712112 | None:intergenic |
| TTCACTGATAAGGAACACCG+AGG | 0.759479 | 3.4:+94715592 | MS.gene40336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94707492 | 94716653 | 94707492 | ID=MS.gene40336 |
| chr3.4 | mRNA | 94707492 | 94716653 | 94707492 | ID=MS.gene40336.t1;Parent=MS.gene40336 |
| chr3.4 | exon | 94707492 | 94707618 | 94707492 | ID=MS.gene40336.t1.exon1;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94707492 | 94707618 | 94707492 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94708045 | 94708561 | 94708045 | ID=MS.gene40336.t1.exon2;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94708045 | 94708561 | 94708045 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94710107 | 94710231 | 94710107 | ID=MS.gene40336.t1.exon3;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94710107 | 94710231 | 94710107 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94710687 | 94710885 | 94710687 | ID=MS.gene40336.t1.exon4;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94710687 | 94710885 | 94710687 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94712093 | 94712321 | 94712093 | ID=MS.gene40336.t1.exon5;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94712093 | 94712321 | 94712093 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94712480 | 94712646 | 94712480 | ID=MS.gene40336.t1.exon6;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94712480 | 94712646 | 94712480 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94712809 | 94713018 | 94712809 | ID=MS.gene40336.t1.exon7;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94712809 | 94713018 | 94712809 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94714029 | 94714139 | 94714029 | ID=MS.gene40336.t1.exon8;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94714029 | 94714139 | 94714029 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94714268 | 94714444 | 94714268 | ID=MS.gene40336.t1.exon9;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94714268 | 94714444 | 94714268 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94715580 | 94716020 | 94715580 | ID=MS.gene40336.t1.exon10;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94715580 | 94716020 | 94715580 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| chr3.4 | exon | 94716363 | 94716653 | 94716363 | ID=MS.gene40336.t1.exon11;Parent=MS.gene40336.t1 |
| chr3.4 | CDS | 94716363 | 94716653 | 94716363 | ID=cds.MS.gene40336.t1;Parent=MS.gene40336.t1 |
| Gene Sequence |
| Protein sequence |
