Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40377.t1 | XP_003603550.1 | 96.2 | 391 | 14 | 1 | 1 | 391 | 1 | 390 | 5.40E-224 | 786.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40377.t1 | Q9SJA7 | 62.0 | 395 | 143 | 3 | 2 | 390 | 5 | 398 | 5.8e-150 | 531.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40377.t1 | G7J2T2 | 96.2 | 391 | 14 | 1 | 1 | 391 | 1 | 390 | 3.9e-224 | 786.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054343 | MS.gene40377 | -0.801991 | 6.93E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40377.t1 | MTR_3g108990 | 96.164 | 391 | 14 | 1 | 1 | 391 | 1 | 390 | 0.0 | 781 |
MS.gene40377.t1 | MTR_3g109010 | 76.562 | 384 | 88 | 2 | 4 | 386 | 6 | 388 | 0.0 | 626 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40377.t1 | AT2G24580 | 62.025 | 395 | 143 | 3 | 2 | 390 | 5 | 398 | 0.0 | 523 |
Find 0 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAGTTAGTTAAAAGAAT+TGG | + | 24210:27006-27025 | MS.gene40377:CDS | 15.0% |
!!! | GATTTTGTGATTGATTTTTT+GGG | + | 24210:27369-27388 | MS.gene40377:CDS | 20.0% |
! | AAGTTAGTTAAAAGAATTGG+CGG | + | 24210:27009-27028 | MS.gene40377:CDS | 25.0% |
! | TTTGGTAAGGTTTATGTATA+CGG | + | 24210:27144-27163 | MS.gene40377:CDS | 25.0% |
!! | TTTGGAAAAAATGTGGTTTT+GGG | + | 24210:27399-27418 | MS.gene40377:CDS | 25.0% |
!!! | GGATTTTGTGATTGATTTTT+TGG | + | 24210:27368-27387 | MS.gene40377:CDS | 25.0% |
!!! | GTAGTAATGGTTTTGAATAT+AGG | - | 24210:26557-26576 | MS.gene40377:intergenic | 25.0% |
AATTCAACTTACCGGAAAAT+TGG | + | 24210:26776-26795 | MS.gene40377:CDS | 30.0% | |
ATTCAACTTACCGGAAAATT+GGG | + | 24210:26777-26796 | MS.gene40377:CDS | 30.0% | |
CATGAAGGTAAATTCGTAAT+TGG | + | 24210:27093-27112 | MS.gene40377:CDS | 30.0% | |
GATGAATGAGTTAAAGGAAT+GGG | + | 24210:27263-27282 | MS.gene40377:CDS | 30.0% | |
GTCAATATCTTACCAATAAC+CGG | - | 24210:27459-27478 | MS.gene40377:intergenic | 30.0% | |
TGATGAATGAGTTAAAGGAA+TGG | + | 24210:27262-27281 | MS.gene40377:CDS | 30.0% | |
TGATGGAATCATACAAACTT+TGG | + | 24210:26584-26603 | MS.gene40377:CDS | 30.0% | |
! | GTTTGGAAAAAATGTGGTTT+TGG | + | 24210:27398-27417 | MS.gene40377:CDS | 30.0% |
! | TGTGATGATGAATGAGTTAA+AGG | + | 24210:27257-27276 | MS.gene40377:CDS | 30.0% |
!! | TAAGATATTGACTCAACTTG+TGG | + | 24210:27467-27486 | MS.gene40377:CDS | 30.0% |
!!! | AGGTTGACTTGAAACATTTT+AGG | + | 24210:27508-27527 | MS.gene40377:CDS | 30.0% |
!!! | GACTTGAAACATTTTAGGAT+TGG | + | 24210:27513-27532 | MS.gene40377:CDS | 30.0% |
!!! | TGTTTTGAAAGACAACACAA+AGG | + | 24210:26885-26904 | MS.gene40377:CDS | 30.0% |
!!! | TTTGTGATTGATTTTTTGGG+TGG | + | 24210:27372-27391 | MS.gene40377:CDS | 30.0% |
!!! | TTTTGCTAGCTTTTTTGGTA+AGG | + | 24210:27131-27150 | MS.gene40377:CDS | 30.0% |
AAAAAATGCGTGGTAACTGT+TGG | + | 24210:26973-26992 | MS.gene40377:CDS | 35.0% | |
CAGTTTGATGTGATTATCGT+CGG | + | 24210:26400-26419 | MS.gene40377:CDS | 35.0% | |
CCAAAAAAGCTAGCAAAAGT+TGG | - | 24210:27129-27148 | MS.gene40377:intergenic | 35.0% | |
GAAGGTAAATTCGTAATTGG+TGG | + | 24210:27096-27115 | MS.gene40377:CDS | 35.0% | |
GTTACTGGAGGATTAAAGAA+GGG | + | 24210:27070-27089 | MS.gene40377:CDS | 35.0% | |
TCAAAACCATTACTACCCTT+TGG | + | 24210:26561-26580 | MS.gene40377:CDS | 35.0% | |
TCAATCACAAAATCCTCATC+TGG | - | 24210:27363-27382 | MS.gene40377:intergenic | 35.0% | |
TGGTGAGTTTGGAAAAAATG+TGG | + | 24210:27392-27411 | MS.gene40377:CDS | 35.0% | |
TGTATGATTCCATCACCAAA+GGG | - | 24210:26579-26598 | MS.gene40377:intergenic | 35.0% | |
TGTTACTGGAGGATTAAAGA+AGG | + | 24210:27069-27088 | MS.gene40377:CDS | 35.0% | |
TTGAATATAGGTAGCACGAA+TGG | - | 24210:26545-26564 | MS.gene40377:intergenic | 35.0% | |
TTGTATGATTCCATCACCAA+AGG | - | 24210:26580-26599 | MS.gene40377:intergenic | 35.0% | |
! | ATGTTTCAAGTCAACCTCAT+TGG | - | 24210:27505-27524 | MS.gene40377:intergenic | 35.0% |
!! | GAATGGGTTGAAGGTATATT+TGG | + | 24210:27279-27298 | MS.gene40377:CDS | 35.0% |
!! | GTGACGGATATAAAAAACGA+CGG | + | 24210:26907-26926 | MS.gene40377:CDS | 35.0% |
!!! | AAAAATGTGGTTTTGGGTGT+TGG | + | 24210:27405-27424 | MS.gene40377:CDS | 35.0% |
!!! | AAAATGTGGTTTTGGGTGTT+GGG | + | 24210:27406-27425 | MS.gene40377:CDS | 35.0% |
!!! | CCAACTTTTGCTAGCTTTTT+TGG | + | 24210:27126-27145 | MS.gene40377:CDS | 35.0% |
AACTTACCGGAAAATTGGGT+GGG | + | 24210:26781-26800 | MS.gene40377:CDS | 40.0% | |
ACGGATATAAAAAACGACGG+AGG | + | 24210:26910-26929 | MS.gene40377:CDS | 40.0% | |
ATGCAAGATTGTTTCACCAC+TGG | - | 24210:27327-27346 | MS.gene40377:intergenic | 40.0% | |
CAGACACTCGCTTACAAAAA+CGG | + | 24210:26859-26878 | MS.gene40377:CDS | 40.0% | |
GAAAGACAACACAAAGGTGA+CGG | + | 24210:26891-26910 | MS.gene40377:CDS | 40.0% | |
GTAACAAACATGAGTCTCCA+CGG | - | 24210:27055-27074 | MS.gene40377:intergenic | 40.0% | |
GTATTCAATGACACCAGATG+AGG | + | 24210:27347-27366 | MS.gene40377:CDS | 40.0% | |
TAACAAACATGAGTCTCCAC+GGG | - | 24210:27054-27073 | MS.gene40377:intergenic | 40.0% | |
TGAAATTCCGATAAAACCCG+TGG | + | 24210:27035-27054 | MS.gene40377:CDS | 40.0% | |
TTTCCGTTATCGAAAACTGC+CGG | + | 24210:26692-26711 | MS.gene40377:CDS | 40.0% | |
! | AGACTCATGTTTGTTACTGG+AGG | + | 24210:27058-27077 | MS.gene40377:CDS | 40.0% |
! | AGGATTAAAGAAGGGCATGA+AGG | + | 24210:27078-27097 | MS.gene40377:CDS | 40.0% |
! | CAAACTTTGGAAAGAAGCTC+AGG | + | 24210:26597-26616 | MS.gene40377:CDS | 40.0% |
! | GGGTTGAAGGTATATTTGGT+GGG | + | 24210:27283-27302 | MS.gene40377:CDS | 40.0% |
! | GGTTGAAGGTATATTTGGTG+GGG | + | 24210:27284-27303 | MS.gene40377:CDS | 40.0% |
! | GTATCCTGGTTTGATGAAAG+CGG | + | 24210:27182-27201 | MS.gene40377:CDS | 40.0% |
! | GTTGTAGTTTTTACCGCGAA+TGG | + | 24210:26934-26953 | MS.gene40377:CDS | 40.0% |
! | TGGAGACTCATGTTTGTTAC+TGG | + | 24210:27055-27074 | MS.gene40377:CDS | 40.0% |
! | TGGGTTGAAGGTATATTTGG+TGG | + | 24210:27282-27301 | MS.gene40377:CDS | 40.0% |
! | TTCCGGTAAGTTGAATTTGC+CGG | - | 24210:26773-26792 | MS.gene40377:intergenic | 40.0% |
! | TTTAAGATGGCTCCGGTTAT+TGG | + | 24210:27444-27463 | MS.gene40377:CDS | 40.0% |
! | TTTCCGGCAGTTTTCGATAA+CGG | - | 24210:26698-26717 | MS.gene40377:intergenic | 40.0% |
!! | GAGTTAAAGGAATGGGTTGA+AGG | + | 24210:27270-27289 | MS.gene40377:CDS | 40.0% |
!! | GATATTGACTCAACTTGTGG+TGG | + | 24210:27470-27489 | MS.gene40377:CDS | 40.0% |
!! | GGTGGGGTATTTTATGTTTC+CGG | - | 24210:26714-26733 | MS.gene40377:intergenic | 40.0% |
!!! | GATTTTTTGGGTGGTGAGTT+TGG | + | 24210:27381-27400 | MS.gene40377:CDS | 40.0% |
AAACCAGGATACTCCAGAAC+GGG | - | 24210:27174-27193 | MS.gene40377:intergenic | 45.0% | |
AATAAACGTCGTAGCCCACT+TGG | - | 24210:26624-26643 | MS.gene40377:intergenic | 45.0% | |
ATAAACGTCGTAGCCCACTT+GGG | - | 24210:26623-26642 | MS.gene40377:intergenic | 45.0% | |
CAAACCAGGATACTCCAGAA+CGG | - | 24210:27175-27194 | MS.gene40377:intergenic | 45.0% | |
CAACTTACCGGAAAATTGGG+TGG | + | 24210:26780-26799 | MS.gene40377:CDS | 45.0% | |
CCATCACCAAAGGGTAGTAA+TGG | - | 24210:26570-26589 | MS.gene40377:intergenic | 45.0% | |
CCATTACTACCCTTTGGTGA+TGG | + | 24210:26567-26586 | MS.gene40377:CDS | 45.0% | |
GAATTTGCCGGCGAATTTGT+CGG | - | 24210:26761-26780 | MS.gene40377:intergenic | 45.0% | |
GCGAATGGTGAAAAGTTTCG+CGG | + | 24210:26949-26968 | MS.gene40377:CDS | 45.0% | |
GTTTCGCGGTAAAAAATGCG+TGG | + | 24210:26963-26982 | MS.gene40377:CDS | 45.0% | |
TATAGGTAGCACGAATGGTG+CGG | - | 24210:26540-26559 | MS.gene40377:intergenic | 45.0% | |
TTCGGGTCATGGGTTTAAGA+TGG | + | 24210:27431-27450 | MS.gene40377:CDS | 45.0% | |
! | AAACATGGCAGTGGCTTTTG+TGG | - | 24210:26839-26858 | MS.gene40377:intergenic | 45.0% |
! | AACATGGCAGTGGCTTTTGT+GGG | - | 24210:26838-26857 | MS.gene40377:intergenic | 45.0% |
! | GCGAAACTTTTCACCATTCG+CGG | - | 24210:26950-26969 | MS.gene40377:intergenic | 45.0% |
! | GTAAGCGAGTGTCTGAAACA+TGG | - | 24210:26854-26873 | MS.gene40377:intergenic | 45.0% |
! | TCATGGGTTTAAGATGGCTC+CGG | + | 24210:27437-27456 | MS.gene40377:CDS | 45.0% |
! | TTGACTCAACTTGTGGTGGA+TGG | + | 24210:27474-27493 | MS.gene40377:CDS | 45.0% |
!! | CGATAACGGAAAGGATGACT+GGG | - | 24210:26684-26703 | MS.gene40377:intergenic | 45.0% |
!! | TCGATAACGGAAAGGATGAC+TGG | - | 24210:26685-26704 | MS.gene40377:intergenic | 45.0% |
!! | TGACTCAACTTGTGGTGGAT+GGG | + | 24210:27475-27494 | MS.gene40377:CDS | 45.0% |
!! | TGAGTCTCCACGGGTTTTAT+CGG | - | 24210:27045-27064 | MS.gene40377:intergenic | 45.0% |
!! | TGTTGATTCAAGTGAGCCAG+TGG | + | 24210:27308-27327 | MS.gene40377:CDS | 45.0% |
!!! | GAGTGTTTTGAGACCCCTTT+TGG | - | 24210:26464-26483 | MS.gene40377:intergenic | 45.0% |
!!! | GGCAGTTTTCGATAACGGAA+AGG | - | 24210:26693-26712 | MS.gene40377:intergenic | 45.0% |
!!! | GGTTTTGGGTGTTGGGTTTT+CGG | + | 24210:27413-27432 | MS.gene40377:CDS | 45.0% |
!!! | GTTTTGGGTGTTGGGTTTTC+GGG | + | 24210:27414-27433 | MS.gene40377:CDS | 45.0% |
AAAGAAGCTCAGGCCCAAGT+GGG | + | 24210:26607-26626 | MS.gene40377:CDS | 50.0% | |
AAAGCCCAGCACCTTGACAT+GGG | + | 24210:26646-26665 | MS.gene40377:CDS | 50.0% | |
AACCCCACGGTCTCTTATCA+GGG | - | 24210:27233-27252 | MS.gene40377:intergenic | 50.0% | |
AGGATGACTGGGTCGTTGAA+TGG | - | 24210:26673-26692 | MS.gene40377:intergenic | 50.0% | |
ATAGGTAGCACGAATGGTGC+GGG | - | 24210:26539-26558 | MS.gene40377:intergenic | 50.0% | |
ATCATCACAACCGAACCCCA+CGG | - | 24210:27246-27265 | MS.gene40377:intergenic | 50.0% | |
CAAGTTGCCGACAAATTCGC+CGG | + | 24210:26751-26770 | MS.gene40377:CDS | 50.0% | |
CGAATTTGTCGGCAACTTGC+TGG | - | 24210:26750-26769 | MS.gene40377:intergenic | 50.0% | |
CGCCGGCAAATTCAACTTAC+CGG | + | 24210:26768-26787 | MS.gene40377:CDS | 50.0% | |
CGCTTACCAAGCTGCCAAAA+GGG | + | 24210:26447-26466 | MS.gene40377:CDS | 50.0% | |
GATGTGATTATCGTCGGAGC+CGG | + | 24210:26406-26425 | MS.gene40377:CDS | 50.0% | |
GCTTACCAAGCTGCCAAAAG+GGG | + | 24210:26448-26467 | MS.gene40377:CDS | 50.0% | |
GGATGACTGGGTCGTTGAAT+GGG | - | 24210:26672-26691 | MS.gene40377:intergenic | 50.0% | |
TGACCCTGATAAGAGACCGT+GGG | + | 24210:27227-27246 | MS.gene40377:CDS | 50.0% | |
TGATAAGAGACCGTGGGGTT+CGG | + | 24210:27233-27252 | MS.gene40377:CDS | 50.0% | |
TGTATACGGAACACCCGTTC+TGG | + | 24210:27158-27177 | MS.gene40377:CDS | 50.0% | |
TTGATGAAAGCGGCGGTTCA+CGG | + | 24210:27192-27211 | MS.gene40377:CDS | 50.0% | |
! | CCTTTTGGCAGCTTGGTAAG+CGG | - | 24210:26449-26468 | MS.gene40377:intergenic | 50.0% |
! | GACAAGCCCACCCAATTTTC+CGG | - | 24210:26790-26809 | MS.gene40377:intergenic | 50.0% |
! | GAGTGTCTGAAACATGGCAG+TGG | - | 24210:26848-26867 | MS.gene40377:intergenic | 50.0% |
! | TCCTGGTTTGATGAAAGCGG+CGG | + | 24210:27185-27204 | MS.gene40377:CDS | 50.0% |
! | TTTGACTTTCTCCACCACCG+TGG | + | 24210:26496-26515 | MS.gene40377:CDS | 50.0% |
!! | ATTTGTCGGCAACTTGCTGG+TGG | - | 24210:26747-26766 | MS.gene40377:intergenic | 50.0% |
!! | GACTCAACTTGTGGTGGATG+GGG | + | 24210:27476-27495 | MS.gene40377:CDS | 50.0% |
!!! | GTGTTGGGTTTTCGGGTCAT+GGG | + | 24210:27421-27440 | MS.gene40377:CDS | 50.0% |
AATGGTGCGGGATTCACCGT+GGG | - | 24210:26527-26546 | MS.gene40377:intergenic | 55.0% | |
ATTCACCGTGGGAAGAGCCA+CGG | - | 24210:26516-26535 | MS.gene40377:intergenic | 55.0% | |
CAAAGCCCAGCACCTTGACA+TGG | + | 24210:26645-26664 | MS.gene40377:CDS | 55.0% | |
CAGTATGCCACCGTGTTCAG+TGG | - | 24210:26812-26831 | MS.gene40377:intergenic | 55.0% | |
CCGCTTACCAAGCTGCCAAA+AGG | + | 24210:26446-26465 | MS.gene40377:CDS | 55.0% | |
CGTGGTAACTGTTGGAGCGT+GGG | + | 24210:26981-27000 | MS.gene40377:CDS | 55.0% | |
CGTTGAATGGGCCCATGTCA+AGG | - | 24210:26660-26679 | MS.gene40377:intergenic | 55.0% | |
GAAAGAAGCTCAGGCCCAAG+TGG | + | 24210:26606-26625 | MS.gene40377:CDS | 55.0% | |
GAACCCCACGGTCTCTTATC+AGG | - | 24210:27234-27253 | MS.gene40377:intergenic | 55.0% | |
GACCCTGATAAGAGACCGTG+GGG | + | 24210:27228-27247 | MS.gene40377:CDS | 55.0% | |
GGTGGATGGGGAAACCAATG+AGG | + | 24210:27488-27507 | MS.gene40377:CDS | 55.0% | |
GTGACCCTGATAAGAGACCG+TGG | + | 24210:27226-27245 | MS.gene40377:CDS | 55.0% | |
GTGGGCTTGTCCACTGAACA+CGG | + | 24210:26799-26818 | MS.gene40377:CDS | 55.0% | |
TTTGGCAGCTTGGTAAGCGG+TGG | - | 24210:26446-26465 | MS.gene40377:intergenic | 55.0% | |
! | ACCGCCGCTTTCATCAAACC+AGG | - | 24210:27189-27208 | MS.gene40377:intergenic | 55.0% |
! | TGAGACCCCTTTTGGCAGCT+TGG | - | 24210:26456-26475 | MS.gene40377:intergenic | 55.0% |
!! | ACACCCGTTCTGGAGTATCC+TGG | + | 24210:27168-27187 | MS.gene40377:CDS | 55.0% |
!!! | GGTGTTGGGTTTTCGGGTCA+TGG | + | 24210:27420-27439 | MS.gene40377:CDS | 55.0% |
ATGAAAGCGGCGGTTCACGG+TGG | + | 24210:27195-27214 | MS.gene40377:CDS | 60.0% | |
ATGGGCCCATGTCAAGGTGC+TGG | - | 24210:26654-26673 | MS.gene40377:intergenic | 60.0% | |
CTGGTGGTTGAGGAGCTGGT+GGG | - | 24210:26731-26750 | MS.gene40377:intergenic | 60.0% | |
CTTGCTGGTGGTTGAGGAGC+TGG | - | 24210:26735-26754 | MS.gene40377:intergenic | 60.0% | |
GAATGGTGCGGGATTCACCG+TGG | - | 24210:26528-26547 | MS.gene40377:intergenic | 60.0% | |
GCGTGGTAACTGTTGGAGCG+TGG | + | 24210:26980-26999 | MS.gene40377:CDS | 60.0% | |
GGCTTGTCCACTGAACACGG+TGG | + | 24210:26802-26821 | MS.gene40377:CDS | 60.0% | |
GGTGGAACTTCCCATGACGC+CGG | - | 24210:26428-26447 | MS.gene40377:intergenic | 60.0% | |
TGGTGGTTGAGGAGCTGGTG+GGG | - | 24210:26730-26749 | MS.gene40377:intergenic | 60.0% | |
! | TGGGCCCATGTCAAGGTGCT+GGG | - | 24210:26653-26672 | MS.gene40377:intergenic | 60.0% |
!! | CGGCAACTTGCTGGTGGTTG+AGG | - | 24210:26741-26760 | MS.gene40377:intergenic | 60.0% |
AAGCGGCGGTTCACGGTGGT+CGG | + | 24210:27199-27218 | MS.gene40377:CDS | 65.0% | |
ATCGTCGGAGCCGGCGTCAT+GGG | + | 24210:26415-26434 | MS.gene40377:CDS | 65.0% | |
CACCACCGTGGCTCTTCCCA+CGG | + | 24210:26508-26527 | MS.gene40377:CDS | 65.0% | |
GCTGGTGGTTGAGGAGCTGG+TGG | - | 24210:26732-26751 | MS.gene40377:intergenic | 65.0% | |
TATCGTCGGAGCCGGCGTCA+TGG | + | 24210:26414-26433 | MS.gene40377:CDS | 65.0% | |
CACCGTGGGAAGAGCCACGG+TGG | - | 24210:26513-26532 | MS.gene40377:intergenic | 70.0% | |
CGTGGGAAGAGCCACGGTGG+TGG | - | 24210:26510-26529 | MS.gene40377:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
24210 | gene | 26388 | 27563 | 26388 | ID=MS.gene40377 |
24210 | mRNA | 26388 | 27563 | 26388 | ID=MS.gene40377.t1;Parent=MS.gene40377 |
24210 | exon | 26388 | 27563 | 26388 | ID=MS.gene40377.t1.exon1;Parent=MS.gene40377.t1 |
24210 | CDS | 26388 | 27563 | 26388 | ID=cds.MS.gene40377.t1;Parent=MS.gene40377.t1 |
Gene Sequence |
Protein sequence |