Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40512.t1 | XP_003610806.1 | 91.6 | 215 | 16 | 1 | 1 | 215 | 1 | 213 | 4.20E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40512.t1 | G7K545 | 91.6 | 215 | 16 | 1 | 1 | 215 | 1 | 213 | 3.0e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene40512.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058083 | MS.gene40512 | 0.919307 | 5.30E-87 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40512.t1 | MTR_5g007230 | 96.744 | 215 | 5 | 1 | 1 | 215 | 1 | 213 | 5.69e-155 | 428 |
| MS.gene40512.t1 | MTR_4g078170 | 78.607 | 201 | 38 | 2 | 19 | 214 | 13 | 213 | 8.61e-116 | 329 |
| MS.gene40512.t1 | MTR_5g030130 | 70.755 | 212 | 55 | 2 | 7 | 211 | 21 | 232 | 1.03e-109 | 314 |
| MS.gene40512.t1 | MTR_8g066820 | 69.302 | 215 | 59 | 2 | 7 | 214 | 19 | 233 | 1.63e-106 | 306 |
| MS.gene40512.t1 | MTR_5g030130 | 75.352 | 142 | 35 | 0 | 7 | 148 | 21 | 162 | 4.61e-81 | 240 |
| MS.gene40512.t1 | MTR_1g062160 | 55.612 | 196 | 81 | 4 | 21 | 210 | 7 | 202 | 4.55e-72 | 218 |
| MS.gene40512.t1 | MTR_7g102790 | 55.500 | 200 | 82 | 4 | 21 | 213 | 7 | 206 | 1.35e-70 | 214 |
| MS.gene40512.t1 | MTR_2g060540 | 47.857 | 140 | 63 | 4 | 17 | 146 | 6 | 145 | 3.65e-40 | 135 |
| MS.gene40512.t1 | MTR_2g060500 | 46.429 | 140 | 65 | 3 | 17 | 146 | 6 | 145 | 8.44e-40 | 134 |
| MS.gene40512.t1 | MTR_2g084495 | 35.556 | 225 | 108 | 5 | 22 | 209 | 5 | 229 | 2.00e-39 | 135 |
| MS.gene40512.t1 | MTR_4g116300 | 45.185 | 135 | 73 | 1 | 21 | 155 | 6 | 139 | 1.52e-38 | 134 |
| MS.gene40512.t1 | MTR_2g084510 | 34.874 | 238 | 105 | 7 | 22 | 209 | 4 | 241 | 1.16e-37 | 131 |
| MS.gene40512.t1 | MTR_2g055210 | 44.030 | 134 | 73 | 2 | 21 | 154 | 102 | 233 | 2.55e-36 | 130 |
| MS.gene40512.t1 | MTR_2g084525 | 46.809 | 141 | 65 | 4 | 22 | 152 | 5 | 145 | 6.82e-35 | 124 |
| MS.gene40512.t1 | MTR_4g094680 | 31.944 | 216 | 119 | 4 | 21 | 209 | 22 | 236 | 3.21e-33 | 119 |
| MS.gene40512.t1 | MTR_2g036170 | 32.301 | 226 | 107 | 6 | 21 | 210 | 37 | 252 | 8.94e-30 | 111 |
| MS.gene40512.t1 | MTR_5g077740 | 28.426 | 197 | 108 | 7 | 17 | 209 | 19 | 186 | 1.27e-18 | 80.5 |
| MS.gene40512.t1 | MTR_8g097310 | 30.519 | 154 | 99 | 3 | 60 | 209 | 4 | 153 | 9.69e-17 | 74.7 |
| MS.gene40512.t1 | MTR_8g105930 | 32.877 | 146 | 75 | 5 | 23 | 147 | 15 | 158 | 6.22e-16 | 74.3 |
| MS.gene40512.t1 | MTR_1g032880 | 39.080 | 87 | 48 | 3 | 66 | 148 | 26 | 111 | 6.03e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40512.t1 | AT4G17900 | 64.762 | 210 | 66 | 3 | 7 | 210 | 20 | 227 | 1.41e-95 | 278 |
| MS.gene40512.t1 | AT4G17900 | 66.667 | 198 | 58 | 3 | 19 | 210 | 18 | 213 | 4.65e-93 | 271 |
| MS.gene40512.t1 | AT1G32700 | 66.509 | 212 | 55 | 5 | 15 | 214 | 4 | 211 | 1.61e-91 | 267 |
| MS.gene40512.t1 | AT1G21000 | 49.174 | 242 | 81 | 5 | 10 | 209 | 5 | 246 | 3.51e-75 | 227 |
| MS.gene40512.t1 | AT1G21000 | 49.174 | 242 | 81 | 5 | 10 | 209 | 2 | 243 | 3.64e-75 | 227 |
| MS.gene40512.t1 | AT5G46710 | 53.883 | 206 | 86 | 4 | 13 | 209 | 4 | 209 | 2.72e-73 | 221 |
| MS.gene40512.t1 | AT5G46710 | 53.365 | 208 | 88 | 4 | 11 | 209 | 18 | 225 | 6.40e-73 | 221 |
| MS.gene40512.t1 | AT1G32700 | 66.477 | 176 | 45 | 4 | 49 | 214 | 1 | 172 | 2.64e-72 | 217 |
| MS.gene40512.t1 | AT1G76590 | 48.684 | 228 | 78 | 3 | 21 | 209 | 18 | 245 | 9.29e-71 | 216 |
| MS.gene40512.t1 | AT1G43000 | 45.495 | 222 | 102 | 3 | 7 | 209 | 2 | 223 | 3.21e-65 | 201 |
| MS.gene40512.t1 | AT1G43000 | 46.296 | 216 | 97 | 3 | 13 | 209 | 1 | 216 | 8.83e-65 | 199 |
| MS.gene40512.t1 | AT5G46710 | 59.420 | 138 | 55 | 1 | 11 | 147 | 18 | 155 | 1.12e-58 | 182 |
| MS.gene40512.t1 | AT2G27930 | 42.927 | 205 | 90 | 4 | 18 | 211 | 1 | 189 | 2.77e-51 | 164 |
| MS.gene40512.t1 | AT2G27930 | 42.927 | 205 | 90 | 4 | 18 | 211 | 1 | 189 | 2.77e-51 | 164 |
| MS.gene40512.t1 | AT2G27930 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 8.99e-48 | 155 |
| MS.gene40512.t1 | AT2G27930 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 8.99e-48 | 155 |
| MS.gene40512.t1 | AT2G12646 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.73e-40 | 137 |
| MS.gene40512.t1 | AT2G12646 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 5.73e-40 | 137 |
| MS.gene40512.t1 | AT2G12646 | 45.926 | 135 | 72 | 1 | 21 | 155 | 3 | 136 | 1.80e-39 | 136 |
| MS.gene40512.t1 | AT3G60670 | 45.455 | 132 | 71 | 1 | 16 | 147 | 2 | 132 | 1.68e-36 | 128 |
| MS.gene40512.t1 | AT1G31040 | 34.071 | 226 | 110 | 6 | 21 | 209 | 19 | 242 | 5.95e-35 | 124 |
| MS.gene40512.t1 | AT2G27930 | 43.243 | 148 | 58 | 3 | 74 | 211 | 61 | 192 | 1.15e-31 | 114 |
| MS.gene40512.t1 | AT2G27930 | 43.243 | 148 | 58 | 3 | 74 | 211 | 61 | 192 | 1.15e-31 | 114 |
| MS.gene40512.t1 | AT2G01818 | 32.127 | 221 | 126 | 6 | 12 | 209 | 2 | 221 | 1.23e-24 | 97.1 |
| MS.gene40512.t1 | AT2G01818 | 32.886 | 149 | 81 | 5 | 80 | 209 | 9 | 157 | 2.71e-12 | 62.8 |
Find 42 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAAGTATTTAGTAAATA+AGG | 0.240485 | 5.3:-2102603 | None:intergenic |
| TTCACAGACATGGCAAATAT+TGG | 0.300856 | 5.3:-2101753 | None:intergenic |
| TATTTATTTACTCAGATAGT+TGG | 0.359410 | 5.3:+2102391 | MS.gene40512:intron |
| TCATTCACCTACTGCTCCCT+TGG | 0.389190 | 5.3:+2101791 | MS.gene40512:CDS |
| GGGGATGGAGAAGGTGTAGT+TGG | 0.392811 | 5.3:+2100672 | MS.gene40512:CDS |
| CTACTGCTCCCTTGGTTGTA+AGG | 0.404328 | 5.3:+2101799 | MS.gene40512:CDS |
| CTTCATATCATGATGTGATA+AGG | 0.416229 | 5.3:+2101615 | MS.gene40512:CDS |
| CAAAGATCACAGAGCTATCC+AGG | 0.430527 | 5.3:+2100869 | MS.gene40512:CDS |
| TTCTTGTTTGATAGATAAGA+AGG | 0.443037 | 5.3:+2101591 | MS.gene40512:intron |
| TTTCTTCTGGAATTTCTTGG+AGG | 0.443249 | 5.3:-2102416 | None:intergenic |
| TTCATATCATGATGTGATAA+GGG | 0.444748 | 5.3:+2101616 | MS.gene40512:CDS |
| AAAAGTTAAGTGAGAGAGAT+GGG | 0.446555 | 5.3:+2102440 | MS.gene40512:CDS |
| TTGTAAGGTGGCGGTGTTGA+AGG | 0.453737 | 5.3:-2102529 | None:intergenic |
| GTTCCACATAGAGCTCCAAT+AGG | 0.475327 | 5.3:+2102574 | MS.gene40512:CDS |
| TTCCACATAGAGCTCCAATA+GGG | 0.487236 | 5.3:+2102575 | MS.gene40512:CDS |
| AAGAACCTTGCTTGGAGAAG+TGG | 0.495841 | 5.3:-2100744 | None:intergenic |
| GTGACACCTTTGCCAGGCTT+AGG | 0.508847 | 5.3:-2101731 | None:intergenic |
| CCTTTGCCAGGCTTAGGCTG+AGG | 0.513021 | 5.3:-2101725 | None:intergenic |
| ATATTGGTGACACCTTTGCC+AGG | 0.513857 | 5.3:-2101737 | None:intergenic |
| ATTGAACAAAGAACCTTGCT+TGG | 0.519311 | 5.3:-2100752 | None:intergenic |
| AGTGAGAGAGATGGGTCAGA+TGG | 0.523449 | 5.3:+2102448 | MS.gene40512:CDS |
| CAAAATTGCTAAGAGGAGGA+AGG | 0.525337 | 5.3:+2102549 | MS.gene40512:CDS |
| GAAAGGCCTCAGCCTAAGCC+TGG | 0.525826 | 5.3:+2101719 | MS.gene40512:CDS |
| AGATTGTGTTCTTGAATGAA+AGG | 0.538525 | 5.3:+2101702 | MS.gene40512:CDS |
| TATTGCTTGGACTGTATGAA+TGG | 0.540936 | 5.3:+2100816 | MS.gene40512:CDS |
| TGAATGCAATATGTATTGCT+TGG | 0.544713 | 5.3:+2100803 | MS.gene40512:CDS |
| CACCTTACAAAATTGCTAAG+AGG | 0.547965 | 5.3:+2102542 | MS.gene40512:CDS |
| TGCAACCACTTCTCCAAGCA+AGG | 0.549474 | 5.3:+2100739 | MS.gene40512:CDS |
| GAAGGCTTCGTTCACAGACA+TGG | 0.567153 | 5.3:-2101763 | None:intergenic |
| AAAATTGCTAAGAGGAGGAA+GGG | 0.570406 | 5.3:+2102550 | MS.gene40512:CDS |
| TGGAGAAGTGGTTGCAACCA+TGG | 0.580919 | 5.3:-2100732 | None:intergenic |
| CTTACAACCAAGGGAGCAGT+AGG | 0.590242 | 5.3:-2101798 | None:intergenic |
| CCTCAGCCTAAGCCTGGCAA+AGG | 0.590940 | 5.3:+2101725 | MS.gene40512:CDS |
| AAGAAATCAAGTGGCCACCA+TGG | 0.599172 | 5.3:+2100715 | MS.gene40512:CDS |
| AATGCATACCTTACAACCAA+GGG | 0.611602 | 5.3:-2101807 | None:intergenic |
| CTTACAAAATTGCTAAGAGG+AGG | 0.624645 | 5.3:+2102545 | MS.gene40512:CDS |
| AGTAGGTGAATGAATCAAGA+AGG | 0.627686 | 5.3:-2101781 | None:intergenic |
| TTAATGAAGAAGAAATCAAG+TGG | 0.628863 | 5.3:+2100706 | MS.gene40512:CDS |
| TCCACATAGAGCTCCAATAG+GGG | 0.638714 | 5.3:+2102576 | MS.gene40512:CDS |
| CCACATAGAGCTCCAATAGG+GGG | 0.648093 | 5.3:+2102577 | MS.gene40512:CDS |
| CAATGCATACCTTACAACCA+AGG | 0.674127 | 5.3:-2101808 | None:intergenic |
| AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | 5.3:-2100729 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAAAATTTGAAAAA+TGG | - | chr5.3:2102367-2102386 | None:intergenic | 10.0% |
| !! | TAAAATCATGAAAAAAAAAA+TGG | - | chr5.3:2100591-2100610 | None:intergenic | 10.0% |
| !! | TAATTATATGTATGTAATTA+GGG | + | chr5.3:2100651-2100670 | MS.gene40512:intron | 10.0% |
| !! | TTAATTATATGTATGTAATT+AGG | + | chr5.3:2100650-2100669 | MS.gene40512:intron | 10.0% |
| !! | AATTATATGTATGTAATTAG+GGG | + | chr5.3:2100652-2100671 | MS.gene40512:intron | 15.0% |
| !!! | ATTTTACACTCAATTTTTAT+TGG | + | chr5.3:2102054-2102073 | MS.gene40512:intron | 15.0% |
| !!! | GTCAAAAACATTTTTTTAAT+TGG | - | chr5.3:2101263-2101282 | None:intergenic | 15.0% |
| !!! | GTTGTTTGATATTTTTAATT+TGG | + | chr5.3:2100627-2100646 | MS.gene40512:intron | 15.0% |
| !!! | TTTTAAATCAATTTTGTAAG+AGG | - | chr5.3:2101437-2101456 | None:intergenic | 15.0% |
| !! | AATGTTTGCATACTTATTAT+AGG | - | chr5.3:2102150-2102169 | None:intergenic | 20.0% |
| !! | ACCACATATATGATATAATA+TGG | + | chr5.3:2101533-2101552 | MS.gene40512:intron | 20.0% |
| !! | ATTATATGTATGTAATTAGG+GGG | + | chr5.3:2100653-2100672 | MS.gene40512:intron | 20.0% |
| !! | CACAATAATAAATTGTTTGA+TGG | - | chr5.3:2101299-2101318 | None:intergenic | 20.0% |
| !! | CCACATATATGATATAATAT+GGG | + | chr5.3:2101534-2101553 | MS.gene40512:intron | 20.0% |
| !! | TAGAATCCATTAAAATACAT+TGG | - | chr5.3:2101149-2101168 | None:intergenic | 20.0% |
| !! | TATTTATTTACTCAGATAGT+TGG | + | chr5.3:2102391-2102410 | MS.gene40512:intron | 20.0% |
| !! | TGACTTTCATAAAATATAAG+AGG | + | chr5.3:2101397-2101416 | MS.gene40512:intron | 20.0% |
| !!! | ATGTTATACTTACTTTTTCA+AGG | - | chr5.3:2102195-2102214 | None:intergenic | 20.0% |
| !!! | ATTTGAAATCTTCACAAAAT+TGG | - | chr5.3:2101048-2101067 | None:intergenic | 20.0% |
| !!! | TAATAAGTATGCAAACATTT+TGG | + | chr5.3:2102151-2102170 | MS.gene40512:intron | 20.0% |
| !!! | TGTTATACTTACTTTTTCAA+GGG | - | chr5.3:2102194-2102213 | None:intergenic | 20.0% |
| ! | AAAATATTTGTCTTCTGTGT+TGG | + | chr5.3:2101169-2101188 | MS.gene40512:intron | 25.0% |
| ! | AATTATCACATCATGATTCA+TGG | - | chr5.3:2101345-2101364 | None:intergenic | 25.0% |
| ! | ATGAATCATGATGTGATAAT+TGG | + | chr5.3:2101344-2101363 | MS.gene40512:intron | 25.0% |
| ! | ATGTGTAGTATATGTTAAAG+GGG | - | chr5.3:2100550-2100569 | None:intergenic | 25.0% |
| ! | ATTACTTAATAGTGTCAATG+TGG | + | chr5.3:2100979-2100998 | MS.gene40512:intron | 25.0% |
| ! | CATGTGTAGTATATGTTAAA+GGG | - | chr5.3:2100551-2100570 | None:intergenic | 25.0% |
| ! | CCCATATTATATCATATATG+TGG | - | chr5.3:2101537-2101556 | None:intergenic | 25.0% |
| ! | GAGTTAATTAACACTCAAAT+TGG | + | chr5.3:2102218-2102237 | MS.gene40512:intron | 25.0% |
| ! | GTCTTCAAAATTGTATTCAT+GGG | + | chr5.3:2102240-2102259 | MS.gene40512:intron | 25.0% |
| ! | TCTAGGTAACGTTTAATATT+AGG | + | chr5.3:2102117-2102136 | MS.gene40512:intron | 25.0% |
| ! | TTAATGAAGAAGAAATCAAG+TGG | + | chr5.3:2100706-2100725 | MS.gene40512:CDS | 25.0% |
| ! | TTCATATCATGATGTGATAA+GGG | + | chr5.3:2101616-2101635 | MS.gene40512:CDS | 25.0% |
| !! | TTCTTGTTTGATAGATAAGA+AGG | + | chr5.3:2101591-2101610 | MS.gene40512:intron | 25.0% |
| !!! | AATCAAAAGCTTTGAATTTG+AGG | + | chr5.3:2101065-2101084 | MS.gene40512:intron | 25.0% |
| !!! | AGAAATTTTTGGACATAACA+GGG | + | chr5.3:2101651-2101670 | MS.gene40512:CDS | 25.0% |
| !!! | CACTTAACTTTTTTTTCTTC+TGG | - | chr5.3:2102432-2102451 | None:intergenic | 25.0% |
| !!! | TATAAGTATCTTGTTTTACC+TGG | - | chr5.3:2100890-2100909 | None:intergenic | 25.0% |
| !!! | TGAAAGCAATTTTAACTTGA+TGG | - | chr5.3:2101847-2101866 | None:intergenic | 25.0% |
| !!! | TTTTTCAAGGGAAACAAATA+GGG | - | chr5.3:2102182-2102201 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTGGAATTTCT+TGG | - | chr5.3:2102422-2102441 | None:intergenic | 25.0% |
| AAAAAGTTAAGTGAGAGAGA+TGG | + | chr5.3:2102439-2102458 | MS.gene40512:CDS | 30.0% | |
| AAAAGTTAAGTGAGAGAGAT+GGG | + | chr5.3:2102440-2102459 | MS.gene40512:CDS | 30.0% | |
| ACCAAAACATTAACACATAC+AGG | - | chr5.3:2102029-2102048 | None:intergenic | 30.0% | |
| AGATTGTGTTCTTGAATGAA+AGG | + | chr5.3:2101702-2101721 | MS.gene40512:CDS | 30.0% | |
| ATTCAAAAGTCAACTATGGA+TGG | + | chr5.3:2101237-2101256 | MS.gene40512:intron | 30.0% | |
| CCATGTGTAGTATATGTTAA+AGG | - | chr5.3:2100552-2100571 | None:intergenic | 30.0% | |
| CCTTTAACATATACTACACA+TGG | + | chr5.3:2100549-2100568 | MS.gene40512:intron | 30.0% | |
| CTTCACAAAATTGGATGAAA+TGG | - | chr5.3:2101039-2101058 | None:intergenic | 30.0% | |
| CTTCATATCATGATGTGATA+AGG | + | chr5.3:2101615-2101634 | MS.gene40512:CDS | 30.0% | |
| CTTGTACACATTACTTTCTT+GGG | + | chr5.3:2101116-2101135 | MS.gene40512:intron | 30.0% | |
| GGTCTTCAAAATTGTATTCA+TGG | + | chr5.3:2102239-2102258 | MS.gene40512:intron | 30.0% | |
| TGAATGCAATATGTATTGCT+TGG | + | chr5.3:2100803-2100822 | MS.gene40512:CDS | 30.0% | |
| TGCAATTCAAAAGTCAACTA+TGG | + | chr5.3:2101233-2101252 | MS.gene40512:intron | 30.0% | |
| TGTGCAATTTAAATAGCCAT+CGG | + | chr5.3:2101315-2101334 | MS.gene40512:intron | 30.0% | |
| TTGTACACATTACTTTCTTG+GGG | + | chr5.3:2101117-2101136 | MS.gene40512:intron | 30.0% | |
| ! | TCCTGTATGTGTTAATGTTT+TGG | + | chr5.3:2102025-2102044 | MS.gene40512:intron | 30.0% |
| !! | AAGGGTCCAATGTATTTTAA+TGG | + | chr5.3:2101140-2101159 | MS.gene40512:intron | 30.0% |
| !! | CAGAAATTTTTGGACATAAC+AGG | + | chr5.3:2101650-2101669 | MS.gene40512:CDS | 30.0% |
| !! | CATATTGCATTCACTTTTGT+TGG | - | chr5.3:2100796-2100815 | None:intergenic | 30.0% |
| !! | GAAATTTTTGGACATAACAG+GGG | + | chr5.3:2101652-2101671 | MS.gene40512:CDS | 30.0% |
| !! | GTCTGAGATACAGAAATTTT+TGG | + | chr5.3:2101640-2101659 | MS.gene40512:CDS | 30.0% |
| !!! | ATTTTAACTTGATGGAGAGT+TGG | - | chr5.3:2101839-2101858 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGGAAACAAAT+AGG | - | chr5.3:2102183-2102202 | None:intergenic | 30.0% |
| !!! | TTTTAACTTGATGGAGAGTT+GGG | - | chr5.3:2101838-2101857 | None:intergenic | 30.0% |
| AAAATTGCTAAGAGGAGGAA+GGG | + | chr5.3:2102550-2102569 | MS.gene40512:CDS | 35.0% | |
| AACGTTACCTAGATTGTTTG+AGG | - | chr5.3:2102110-2102129 | None:intergenic | 35.0% | |
| AATGCATACCTTACAACCAA+GGG | - | chr5.3:2101810-2101829 | None:intergenic | 35.0% | |
| AGTAGGTGAATGAATCAAGA+AGG | - | chr5.3:2101784-2101803 | None:intergenic | 35.0% | |
| ATTGAACAAAGAACCTTGCT+TGG | - | chr5.3:2100755-2100774 | None:intergenic | 35.0% | |
| CACCTTACAAAATTGCTAAG+AGG | + | chr5.3:2102542-2102561 | MS.gene40512:CDS | 35.0% | |
| CCAAGAAAGTAATGTGTACA+AGG | - | chr5.3:2101118-2101137 | None:intergenic | 35.0% | |
| CCTTGTACACATTACTTTCT+TGG | + | chr5.3:2101115-2101134 | MS.gene40512:intron | 35.0% | |
| CTTACAAAATTGCTAAGAGG+AGG | + | chr5.3:2102545-2102564 | MS.gene40512:CDS | 35.0% | |
| GATAATTGGATGATTGCTCA+AGG | + | chr5.3:2101358-2101377 | MS.gene40512:intron | 35.0% | |
| TATGTATGTAATTAGGGGGA+TGG | + | chr5.3:2100657-2100676 | MS.gene40512:intron | 35.0% | |
| TATTGCTTGGACTGTATGAA+TGG | + | chr5.3:2100816-2100835 | MS.gene40512:CDS | 35.0% | |
| TTCACAGACATGGCAAATAT+TGG | - | chr5.3:2101756-2101775 | None:intergenic | 35.0% | |
| ! | CTCCTCTTAGCAATTTTGTA+AGG | - | chr5.3:2102547-2102566 | None:intergenic | 35.0% |
| ! | CTCTTAGCAATTTTGTAAGG+TGG | - | chr5.3:2102544-2102563 | None:intergenic | 35.0% |
| ! | TTAGCAATTTTGTAAGGTGG+CGG | - | chr5.3:2102541-2102560 | None:intergenic | 35.0% |
| !! | TTTCTTCTGGAATTTCTTGG+AGG | - | chr5.3:2102419-2102438 | None:intergenic | 35.0% |
| ACACATTACTTTCTTGGGGA+AGG | + | chr5.3:2101121-2101140 | MS.gene40512:intron | 40.0% | |
| CAAAATTGCTAAGAGGAGGA+AGG | + | chr5.3:2102549-2102568 | MS.gene40512:CDS | 40.0% | |
| CAATGCATACCTTACAACCA+AGG | - | chr5.3:2101811-2101830 | None:intergenic | 40.0% | |
| CACATTACTTTCTTGGGGAA+GGG | + | chr5.3:2101122-2101141 | MS.gene40512:intron | 40.0% | |
| GTTGTTGCCTCAAACAATCT+AGG | + | chr5.3:2102100-2102119 | MS.gene40512:intron | 40.0% | |
| TTCCACATAGAGCTCCAATA+GGG | + | chr5.3:2102575-2102594 | MS.gene40512:CDS | 40.0% | |
| TTTCTCATCGAACATGTGTC+TGG | + | chr5.3:2101887-2101906 | MS.gene40512:intron | 40.0% | |
| AAGAAATCAAGTGGCCACCA+TGG | + | chr5.3:2100715-2100734 | MS.gene40512:CDS | 45.0% | |
| AAGAACCTTGCTTGGAGAAG+TGG | - | chr5.3:2100747-2100766 | None:intergenic | 45.0% | |
| CAAAGATCACAGAGCTATCC+AGG | + | chr5.3:2100869-2100888 | MS.gene40512:CDS | 45.0% | |
| CATGATTCATGGTGAACCGA+TGG | - | chr5.3:2101334-2101353 | None:intergenic | 45.0% | |
| GTTCCACATAGAGCTCCAAT+AGG | + | chr5.3:2102574-2102593 | MS.gene40512:CDS | 45.0% | |
| TAAATAAGGCCTCCCCCTAT+TGG | - | chr5.3:2102592-2102611 | None:intergenic | 45.0% | |
| TCCACATAGAGCTCCAATAG+GGG | + | chr5.3:2102576-2102595 | MS.gene40512:CDS | 45.0% | |
| TGTAATTAGGGGGATGGAGA+AGG | + | chr5.3:2100663-2100682 | MS.gene40512:intron | 45.0% | |
| ! | ATATTGGTGACACCTTTGCC+AGG | - | chr5.3:2101740-2101759 | None:intergenic | 45.0% |
| AGAAGTGGTTGCAACCATGG+TGG | - | chr5.3:2100732-2100751 | None:intergenic | 50.0% | |
| AGTGAGAGAGATGGGTCAGA+TGG | + | chr5.3:2102448-2102467 | MS.gene40512:CDS | 50.0% | |
| CCACATAGAGCTCCAATAGG+GGG | + | chr5.3:2102577-2102596 | MS.gene40512:CDS | 50.0% | |
| CTACTGCTCCCTTGGTTGTA+AGG | + | chr5.3:2101799-2101818 | MS.gene40512:CDS | 50.0% | |
| CTTACAACCAAGGGAGCAGT+AGG | - | chr5.3:2101801-2101820 | None:intergenic | 50.0% | |
| GAAGGCTTCGTTCACAGACA+TGG | - | chr5.3:2101766-2101785 | None:intergenic | 50.0% | |
| TCATTCACCTACTGCTCCCT+TGG | + | chr5.3:2101791-2101810 | MS.gene40512:CDS | 50.0% | |
| TGCAACCACTTCTCCAAGCA+AGG | + | chr5.3:2100739-2100758 | MS.gene40512:CDS | 50.0% | |
| TGGAGAAGTGGTTGCAACCA+TGG | - | chr5.3:2100735-2100754 | None:intergenic | 50.0% | |
| ! | TTGTAAGGTGGCGGTGTTGA+AGG | - | chr5.3:2102532-2102551 | None:intergenic | 50.0% |
| CATAGAGCTCCAATAGGGGG+AGG | + | chr5.3:2102580-2102599 | MS.gene40512:CDS | 55.0% | |
| CCCCCTATTGGAGCTCTATG+TGG | - | chr5.3:2102580-2102599 | None:intergenic | 55.0% | |
| GTGACACCTTTGCCAGGCTT+AGG | - | chr5.3:2101734-2101753 | None:intergenic | 55.0% | |
| ! | GGGGATGGAGAAGGTGTAGT+TGG | + | chr5.3:2100672-2100691 | MS.gene40512:CDS | 55.0% |
| CCTCAGCCTAAGCCTGGCAA+AGG | + | chr5.3:2101725-2101744 | MS.gene40512:CDS | 60.0% | |
| CCTTTGCCAGGCTTAGGCTG+AGG | - | chr5.3:2101728-2101747 | None:intergenic | 60.0% | |
| GAAAGGCCTCAGCCTAAGCC+TGG | + | chr5.3:2101719-2101738 | MS.gene40512:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2100515 | 2102615 | 2100515 | ID=MS.gene40512 |
| chr5.3 | mRNA | 2100515 | 2102615 | 2100515 | ID=MS.gene40512.t1;Parent=MS.gene40512 |
| chr5.3 | exon | 2100515 | 2100517 | 2100515 | ID=MS.gene40512.t1.exon1;Parent=MS.gene40512.t1 |
| chr5.3 | CDS | 2100515 | 2100517 | 2100515 | ID=cds.MS.gene40512.t1;Parent=MS.gene40512.t1 |
| chr5.3 | exon | 2100672 | 2100890 | 2100672 | ID=MS.gene40512.t1.exon2;Parent=MS.gene40512.t1 |
| chr5.3 | CDS | 2100672 | 2100890 | 2100672 | ID=cds.MS.gene40512.t1;Parent=MS.gene40512.t1 |
| chr5.3 | exon | 2101605 | 2101820 | 2101605 | ID=MS.gene40512.t1.exon3;Parent=MS.gene40512.t1 |
| chr5.3 | CDS | 2101605 | 2101820 | 2101605 | ID=cds.MS.gene40512.t1;Parent=MS.gene40512.t1 |
| chr5.3 | exon | 2102406 | 2102615 | 2102406 | ID=MS.gene40512.t1.exon4;Parent=MS.gene40512.t1 |
| chr5.3 | CDS | 2102406 | 2102615 | 2102406 | ID=cds.MS.gene40512.t1;Parent=MS.gene40512.t1 |
| Gene Sequence |
| Protein sequence |
