Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40754.t1 | XP_003591235.1 | 98.7 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.60E-122 | 448.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40754.t1 | O73944 | 33.3 | 186 | 102 | 6 | 13 | 196 | 3 | 168 | 1.4e-15 | 84.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40754.t1 | G7IAA5 | 98.7 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.1e-122 | 448.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058099 | MS.gene40754 | 0.814345 | 1.62E-51 | -1.69E-46 |
| MS.gene058111 | MS.gene40754 | 0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene40754 | 0.808466 | 3.05E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene40754 | 0.806623 | 7.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40754.t1 | MTR_1g084740 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.25e-170 | 468 |
| MS.gene40754.t1 | MTR_1g084740 | 76.106 | 226 | 3 | 1 | 1 | 226 | 1 | 175 | 5.92e-118 | 333 |
| MS.gene40754.t1 | MTR_8g065050 | 65.455 | 220 | 71 | 3 | 1 | 219 | 1 | 216 | 1.88e-104 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40754.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.03e-117 | 332 |
| MS.gene40754.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.03e-117 | 332 |
| MS.gene40754.t1 | AT1G56700 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.03e-117 | 332 |
| MS.gene40754.t1 | AT1G23440 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.42e-106 | 306 |
| MS.gene40754.t1 | AT1G23440 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.42e-106 | 306 |
| MS.gene40754.t1 | AT1G56700 | 69.841 | 189 | 56 | 1 | 32 | 220 | 1 | 188 | 4.27e-100 | 289 |
| MS.gene40754.t1 | AT1G23440 | 53.191 | 94 | 40 | 2 | 1 | 94 | 1 | 90 | 6.37e-30 | 107 |
Find 63 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCCAATAAAATTATC+TGG | 0.221027 | 1.2:-59061430 | MS.gene40754:CDS |
| ATGTTTGTTCAGCTGCATTT+TGG | 0.221330 | 1.2:-59061043 | MS.gene40754:intron |
| ATTTGCTGCTTCCTTATTAG+AGG | 0.294466 | 1.2:-59060166 | MS.gene40754:CDS |
| ACCTCCCGTATTCTTGAAAT+CGG | 0.310925 | 1.2:+59060810 | None:intergenic |
| CTTCCGTTGCCCTGATGAAA+TGG | 0.315906 | 1.2:-59060963 | MS.gene40754:CDS |
| AGGAAGCAGCAAATTGCATT+TGG | 0.316795 | 1.2:+59060175 | None:intergenic |
| ATTAGCAAGTACCTCTAATA+AGG | 0.317751 | 1.2:+59060155 | None:intergenic |
| GTAACAACAGTTTATATAAC+AGG | 0.332893 | 1.2:-59061653 | MS.gene40754:CDS |
| GGCTTCCATCCCATTTCATC+AGG | 0.344197 | 1.2:+59060953 | None:intergenic |
| TGCCAAAGGGTTTAGCTATC+GGG | 0.396835 | 1.2:-59061547 | MS.gene40754:CDS |
| TTCAGATTCCTTGGCAATAA+CGG | 0.399064 | 1.2:+59061457 | None:intergenic |
| CTATCATTCTCTTCGGTTCG+CGG | 0.401359 | 1.2:-59060262 | MS.gene40754:CDS |
| ACCTTTCGTTGCCAAGGTCT+TGG | 0.402676 | 1.2:+59060338 | None:intergenic |
| GGAAGCAGCAAATTGCATTT+GGG | 0.414368 | 1.2:+59060176 | None:intergenic |
| ATGTTTACTATCATTCTCTT+CGG | 0.426824 | 1.2:-59060269 | MS.gene40754:CDS |
| ACCAGAACAATTACATGAGC+TGG | 0.432033 | 1.2:+59060121 | None:intergenic |
| ACTTGAAGATTCAGATTCCT+TGG | 0.436551 | 1.2:+59061448 | None:intergenic |
| TTGCCAAAGGGTTTAGCTAT+CGG | 0.445632 | 1.2:-59061548 | MS.gene40754:CDS |
| TTATTCACAATTGTCTCCGT+TGG | 0.459045 | 1.2:+59061599 | None:intergenic |
| GTCTTGGTCATCTGCTCCAC+AGG | 0.464244 | 1.2:+59060354 | None:intergenic |
| ATGGCCCGATTTCAAGAATA+CGG | 0.466039 | 1.2:-59060815 | MS.gene40754:CDS |
| GTTCCCATTGTTCCTTCAGA+TGG | 0.480004 | 1.2:-59060834 | MS.gene40754:CDS |
| GACAATTGTGAATAATTTGA+CGG | 0.484102 | 1.2:-59061591 | MS.gene40754:CDS |
| TACAGCAGCTGAAGGACCTT+CGG | 0.491990 | 1.2:+59061673 | None:intergenic |
| CCTCCCGTATTCTTGAAATC+GGG | 0.492780 | 1.2:+59060811 | None:intergenic |
| TGTAGTATTCTTGATACTGC+TGG | 0.503788 | 1.2:-59061521 | MS.gene40754:CDS |
| CTCCCGATAGCTAAACCCTT+TGG | 0.506502 | 1.2:+59061545 | None:intergenic |
| TAACGGCAGATTGCAATGTC+TGG | 0.506661 | 1.2:+59061474 | None:intergenic |
| ATCATAACCTTTCGTTGCCA+AGG | 0.509665 | 1.2:+59060332 | None:intergenic |
| ACAGGTTTCAAGAAATTCCA+TGG | 0.515589 | 1.2:-59061635 | MS.gene40754:CDS |
| TTCCGTTGCCCTGATGAAAT+GGG | 0.529742 | 1.2:-59060962 | MS.gene40754:CDS |
| AAGTTCCAATAAAATTATCT+GGG | 0.531862 | 1.2:-59061429 | MS.gene40754:intron |
| CGGGCCATCTGAAGGAACAA+TGG | 0.539127 | 1.2:+59060830 | None:intergenic |
| GGGCCATCTGAAGGAACAAT+GGG | 0.541004 | 1.2:+59060831 | None:intergenic |
| TGGTCATCTGCTCCACAGGA+AGG | 0.549415 | 1.2:+59060358 | None:intergenic |
| TCATTTATTGTGAAGAAGAG+TGG | 0.550686 | 1.2:+59060204 | None:intergenic |
| CTTGAAATCGGGCCATCTGA+AGG | 0.551552 | 1.2:+59060822 | None:intergenic |
| TTGGATTCTCTGAAACTCCA+TGG | 0.559574 | 1.2:+59061618 | None:intergenic |
| ATGTCTGGTACAGCGGAACA+AGG | 0.561027 | 1.2:+59061489 | None:intergenic |
| ATCCCATTTCATCAGGGCAA+CGG | 0.562088 | 1.2:+59060960 | None:intergenic |
| GCAATCTGCCGTTATTGCCA+AGG | 0.564914 | 1.2:-59061465 | MS.gene40754:CDS |
| GATTGCAATGTCTGGTACAG+CGG | 0.575127 | 1.2:+59061482 | None:intergenic |
| CATCCGCAGATGGGGTCCGA+AGG | 0.582064 | 1.2:-59061689 | None:intergenic |
| ACCAAGACCTTGGCAACGAA+AGG | 0.585242 | 1.2:-59060339 | MS.gene40754:CDS |
| ATTCTTGATACTGCTGGACA+AGG | 0.586542 | 1.2:-59061515 | MS.gene40754:CDS |
| GGAGCAGATGACCAAGACCT+TGG | 0.592442 | 1.2:-59060349 | MS.gene40754:CDS |
| CTTCGGTTCGCGGAGCAGAA+CGG | 0.596040 | 1.2:-59060252 | MS.gene40754:CDS |
| CCAGAACAATTACATGAGCT+GGG | 0.598749 | 1.2:+59060122 | None:intergenic |
| TGGCCCGATTTCAAGAATAC+GGG | 0.601050 | 1.2:-59060814 | MS.gene40754:CDS |
| GGGTTAACAGTGGTGCAACA+AGG | 0.614278 | 1.2:-59061021 | MS.gene40754:CDS |
| GGTCATCTGCTCCACAGGAA+GGG | 0.614706 | 1.2:+59060359 | None:intergenic |
| TGAAATGGGATGGAAGCCAC+AGG | 0.624135 | 1.2:-59060948 | MS.gene40754:intron |
| ACTGTTGTTACAGCAGCTGA+AGG | 0.629270 | 1.2:+59061665 | None:intergenic |
| CATTTCATCAGGGCAACGGA+AGG | 0.630663 | 1.2:+59060964 | None:intergenic |
| TATGCAGACTACCCTTCCTG+TGG | 0.633375 | 1.2:-59060370 | MS.gene40754:intron |
| GCTTCCATCCCATTTCATCA+GGG | 0.640372 | 1.2:+59060954 | None:intergenic |
| GTTGCCCTGATGAAATGGGA+TGG | 0.648441 | 1.2:-59060958 | MS.gene40754:CDS |
| TGTCTGGTACAGCGGAACAA+GGG | 0.649049 | 1.2:+59061490 | None:intergenic |
| CCCGATTTCAAGAATACGGG+AGG | 0.650919 | 1.2:-59060811 | MS.gene40754:intron |
| TGACATCTGATGATGCAGGA+AGG | 0.659977 | 1.2:-59060305 | MS.gene40754:CDS |
| GTAATGACATCTGATGATGC+AGG | 0.664436 | 1.2:-59060309 | MS.gene40754:CDS |
| AGAACGTCAAGCTGTCAATG+AGG | 0.679006 | 1.2:-59060990 | MS.gene40754:CDS |
| TGGAGTTTCAGAGAATCCAA+CGG | 0.696242 | 1.2:-59061615 | MS.gene40754:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATATGATAATATAATTA+TGG | - | chr1.2:59060590-59060609 | MS.gene40754:intron | 10.0% |
| !! | TATATTATCATATCTAAACA+AGG | + | chr1.2:59060586-59060605 | None:intergenic | 15.0% |
| !! | AAGTTCCAATAAAATTATCT+GGG | - | chr1.2:59060382-59060401 | MS.gene40754:intron | 20.0% |
| !! | TACATAAATAAAACTTCAGA+AGG | + | chr1.2:59060481-59060500 | None:intergenic | 20.0% |
| !!! | TTTCTGCAATAAAAGTTTTA+TGG | + | chr1.2:59060957-59060976 | None:intergenic | 20.0% |
| ! | ATCATATCTAAACAAGGATA+CGG | + | chr1.2:59060580-59060599 | None:intergenic | 25.0% |
| ! | ATGTTTACTATCATTCTCTT+CGG | - | chr1.2:59061542-59061561 | MS.gene40754:CDS | 25.0% |
| ! | CAAGTTCCAATAAAATTATC+TGG | - | chr1.2:59060381-59060400 | MS.gene40754:intron | 25.0% |
| ! | GACAATTGTGAATAATTTGA+CGG | - | chr1.2:59060220-59060239 | MS.gene40754:CDS | 25.0% |
| ! | GTAACAACAGTTTATATAAC+AGG | - | chr1.2:59060158-59060177 | MS.gene40754:CDS | 25.0% |
| ! | GTACAAATATGAAAATGTTG+AGG | - | chr1.2:59061085-59061104 | MS.gene40754:intron | 25.0% |
| ! | TTAGCATAGAACTGAAATAA+TGG | - | chr1.2:59060668-59060687 | MS.gene40754:intron | 25.0% |
| ! | TTATCATGAATCTTATGTTC+TGG | - | chr1.2:59060743-59060762 | MS.gene40754:intron | 25.0% |
| ! | TTGTGAAATGATACTTAGAA+TGG | + | chr1.2:59061167-59061186 | None:intergenic | 25.0% |
| !! | CTGTTCTTTAAATATTTCTG+AGG | + | chr1.2:59061140-59061159 | None:intergenic | 25.0% |
| AAAACATGGAACAGTCATTA+AGG | + | chr1.2:59061374-59061393 | None:intergenic | 30.0% | |
| ACGGAATATGTGAAAAAGAA+GGG | - | chr1.2:59060239-59060258 | MS.gene40754:CDS | 30.0% | |
| ATGAAAACAAGTTTAACCTG+TGG | + | chr1.2:59060882-59060901 | None:intergenic | 30.0% | |
| ATTAGCAAGTACCTCTAATA+AGG | + | chr1.2:59061659-59061678 | None:intergenic | 30.0% | |
| TCATTTATTGTGAAGAAGAG+TGG | + | chr1.2:59061610-59061629 | None:intergenic | 30.0% | |
| TTAGGACAAAAGACAAAGTT+AGG | + | chr1.2:59061418-59061437 | None:intergenic | 30.0% | |
| ! | AATGGTAAGAAAGTTCTAGT+TGG | - | chr1.2:59060686-59060705 | MS.gene40754:intron | 30.0% |
| ! | ACTCACCCAGATAATTTTAT+TGG | + | chr1.2:59060390-59060409 | None:intergenic | 30.0% |
| ! | TAATAGAGTACTTCAAGATC+AGG | + | chr1.2:59060918-59060937 | None:intergenic | 30.0% |
| ! | TTCATTTTCAAAAACTTGCG+AGG | - | chr1.2:59061230-59061249 | MS.gene40754:intron | 30.0% |
| ! | TTGTTTTCATCAACCCTTTT+AGG | - | chr1.2:59060892-59060911 | MS.gene40754:intron | 30.0% |
| ! | TTTTATGGAACTGTCACTAA+AGG | + | chr1.2:59060942-59060961 | None:intergenic | 30.0% |
| AAAAAGAAGGGTTTGCCAAA+GGG | - | chr1.2:59060251-59060270 | MS.gene40754:CDS | 35.0% | |
| AAGATCACTGGAATTTGACA+TGG | - | chr1.2:59060628-59060647 | MS.gene40754:intron | 35.0% | |
| ACAGGTTTCAAGAAATTCCA+TGG | - | chr1.2:59060176-59060195 | MS.gene40754:CDS | 35.0% | |
| ACTTGAAGATTCAGATTCCT+TGG | + | chr1.2:59060366-59060385 | None:intergenic | 35.0% | |
| CTACACACAAAGTATGACTA+AGG | + | chr1.2:59060444-59060463 | None:intergenic | 35.0% | |
| CTTAGTCATACTTTGTGTGT+AGG | - | chr1.2:59060442-59060461 | MS.gene40754:intron | 35.0% | |
| GACGGAATATGTGAAAAAGA+AGG | - | chr1.2:59060238-59060257 | MS.gene40754:CDS | 35.0% | |
| TGTAGTATTCTTGATACTGC+TGG | - | chr1.2:59060290-59060309 | MS.gene40754:CDS | 35.0% | |
| TTATTCACAATTGTCTCCGT+TGG | + | chr1.2:59060215-59060234 | None:intergenic | 35.0% | |
| TTCAGATTCCTTGGCAATAA+CGG | + | chr1.2:59060357-59060376 | None:intergenic | 35.0% | |
| ! | ATGTTTGTTCAGCTGCATTT+TGG | - | chr1.2:59060768-59060787 | MS.gene40754:intron | 35.0% |
| ! | ATTTGCTGCTTCCTTATTAG+AGG | - | chr1.2:59061645-59061664 | MS.gene40754:CDS | 35.0% |
| ! | CACAAAGTTTCTAGATACCA+AGG | + | chr1.2:59061209-59061228 | None:intergenic | 35.0% |
| ! | TGTTTGTTCAGCTGCATTTT+GGG | - | chr1.2:59060769-59060788 | MS.gene40754:intron | 35.0% |
| ! | TTTTCGATTATCTGAGTCCT+TGG | - | chr1.2:59061189-59061208 | MS.gene40754:intron | 35.0% |
| !!! | TGTTCCATGTTTTTGAGATG+CGG | - | chr1.2:59061381-59061400 | MS.gene40754:intron | 35.0% |
| AACAAGTCTTTGCCTCTTGA+TGG | - | chr1.2:59061273-59061292 | MS.gene40754:intron | 40.0% | |
| ACAACCGCATCTCAAAAACA+TGG | + | chr1.2:59061388-59061407 | None:intergenic | 40.0% | |
| ACCTCCCGTATTCTTGAAAT+CGG | + | chr1.2:59061004-59061023 | None:intergenic | 40.0% | |
| ACTTCAAGATCAGGCCTAAA+AGG | + | chr1.2:59060909-59060928 | None:intergenic | 40.0% | |
| AGGAAGCAGCAAATTGCATT+TGG | + | chr1.2:59061639-59061658 | None:intergenic | 40.0% | |
| AGGGTAGTCTGCATAAAGTT+AGG | + | chr1.2:59061436-59061455 | None:intergenic | 40.0% | |
| AGGTGCAAGTGCAAAGATAT+TGG | - | chr1.2:59061305-59061324 | MS.gene40754:intron | 40.0% | |
| ATCATAACCTTTCGTTGCCA+AGG | + | chr1.2:59061482-59061501 | None:intergenic | 40.0% | |
| ATGGCCCGATTTCAAGAATA+CGG | - | chr1.2:59060996-59061015 | MS.gene40754:CDS | 40.0% | |
| ATTCTTGATACTGCTGGACA+AGG | - | chr1.2:59060296-59060315 | MS.gene40754:CDS | 40.0% | |
| CAAGAATACGGGAGGTAAAT+TGG | - | chr1.2:59061008-59061027 | MS.gene40754:CDS | 40.0% | |
| CTTCAAGATCAGGCCTAAAA+GGG | + | chr1.2:59060908-59060927 | None:intergenic | 40.0% | |
| GAAAAAGAAGGGTTTGCCAA+AGG | - | chr1.2:59060250-59060269 | MS.gene40754:CDS | 40.0% | |
| GGAAGCAGCAAATTGCATTT+GGG | + | chr1.2:59061638-59061657 | None:intergenic | 40.0% | |
| TAACTGCGACTAAAGATCAC+TGG | - | chr1.2:59060616-59060635 | MS.gene40754:intron | 40.0% | |
| TGGAGTTTCAGAGAATCCAA+CGG | - | chr1.2:59060196-59060215 | MS.gene40754:CDS | 40.0% | |
| TTGCCAAAGGGTTTAGCTAT+CGG | - | chr1.2:59060263-59060282 | MS.gene40754:CDS | 40.0% | |
| ! | GTAATGACATCTGATGATGC+AGG | - | chr1.2:59061502-59061521 | MS.gene40754:CDS | 40.0% |
| ! | GTTTGTTCAGCTGCATTTTG+GGG | - | chr1.2:59060770-59060789 | MS.gene40754:intron | 40.0% |
| !! | TTGGATTCTCTGAAACTCCA+TGG | + | chr1.2:59060196-59060215 | None:intergenic | 40.0% |
| AAGTCTTTGCCTCTTGATGG+AGG | - | chr1.2:59061276-59061295 | MS.gene40754:intron | 45.0% | |
| ACTCACAAAGTAGGGATCCT+TGG | + | chr1.2:59060415-59060434 | None:intergenic | 45.0% | |
| ACTGTTGTTACAGCAGCTGA+AGG | + | chr1.2:59060149-59060168 | None:intergenic | 45.0% | |
| AGAACGTCAAGCTGTCAATG+AGG | - | chr1.2:59060821-59060840 | MS.gene40754:CDS | 45.0% | |
| AGGATCCCTACTTTGTGAGT+AGG | - | chr1.2:59060415-59060434 | MS.gene40754:intron | 45.0% | |
| ATCCCATTTCATCAGGGCAA+CGG | + | chr1.2:59060854-59060873 | None:intergenic | 45.0% | |
| ATTATCTGGGTGAGTTGCCA+AGG | - | chr1.2:59060395-59060414 | MS.gene40754:intron | 45.0% | |
| CCTCCCGTATTCTTGAAATC+GGG | + | chr1.2:59061003-59061022 | None:intergenic | 45.0% | |
| CCTTATATGCCTCCATCAAG+AGG | + | chr1.2:59061288-59061307 | None:intergenic | 45.0% | |
| GATTGCAATGTCTGGTACAG+CGG | + | chr1.2:59060332-59060351 | None:intergenic | 45.0% | |
| GCTTCCATCCCATTTCATCA+GGG | + | chr1.2:59060860-59060879 | None:intergenic | 45.0% | |
| GGATCCCTACTTTGTGAGTA+GGG | - | chr1.2:59060416-59060435 | MS.gene40754:intron | 45.0% | |
| GTTCCCATTGTTCCTTCAGA+TGG | - | chr1.2:59060977-59060996 | MS.gene40754:CDS | 45.0% | |
| GTTCTCTCGAGTTCAGTGTT+TGG | - | chr1.2:59061063-59061082 | MS.gene40754:intron | 45.0% | |
| TAACGGCAGATTGCAATGTC+TGG | + | chr1.2:59060340-59060359 | None:intergenic | 45.0% | |
| TGCCAAAGGGTTTAGCTATC+GGG | - | chr1.2:59060264-59060283 | MS.gene40754:CDS | 45.0% | |
| TGGCCCGATTTCAAGAATAC+GGG | - | chr1.2:59060997-59061016 | MS.gene40754:CDS | 45.0% | |
| TTCCGTTGCCCTGATGAAAT+GGG | - | chr1.2:59060849-59060868 | MS.gene40754:intron | 45.0% | |
| ! | CCTCTTGATGGAGGCATATA+AGG | - | chr1.2:59061285-59061304 | MS.gene40754:intron | 45.0% |
| ! | CTATCATTCTCTTCGGTTCG+CGG | - | chr1.2:59061549-59061568 | MS.gene40754:CDS | 45.0% |
| ! | TGACATCTGATGATGCAGGA+AGG | - | chr1.2:59061506-59061525 | MS.gene40754:CDS | 45.0% |
| !!! | CTGCATTTTGGGGTTAACAG+TGG | - | chr1.2:59060780-59060799 | MS.gene40754:intron | 45.0% |
| !!! | TTTTATAATATCATTTATTT+TGG | - | chr1.2:59061112-59061131 | MS.gene40754:intron | 5.0% |
| ACCAAGACCTTGGCAACGAA+AGG | - | chr1.2:59061472-59061491 | MS.gene40754:CDS | 50.0% | |
| ACCTTTCGTTGCCAAGGTCT+TGG | + | chr1.2:59061476-59061495 | None:intergenic | 50.0% | |
| AGGCTCCCTACTCACAAAGT+AGG | + | chr1.2:59060424-59060443 | None:intergenic | 50.0% | |
| ATGTCTGGTACAGCGGAACA+AGG | + | chr1.2:59060325-59060344 | None:intergenic | 50.0% | |
| CATTTCATCAGGGCAACGGA+AGG | + | chr1.2:59060850-59060869 | None:intergenic | 50.0% | |
| CCCGATTTCAAGAATACGGG+AGG | - | chr1.2:59061000-59061019 | MS.gene40754:CDS | 50.0% | |
| CTCCCGATAGCTAAACCCTT+TGG | + | chr1.2:59060269-59060288 | None:intergenic | 50.0% | |
| CTTCCGTTGCCCTGATGAAA+TGG | - | chr1.2:59060848-59060867 | MS.gene40754:intron | 50.0% | |
| CTTGAAATCGGGCCATCTGA+AGG | + | chr1.2:59060992-59061011 | None:intergenic | 50.0% | |
| GCAATCTGCCGTTATTGCCA+AGG | - | chr1.2:59060346-59060365 | MS.gene40754:CDS | 50.0% | |
| GGCTCCCTACTCACAAAGTA+GGG | + | chr1.2:59060423-59060442 | None:intergenic | 50.0% | |
| GGCTTCCATCCCATTTCATC+AGG | + | chr1.2:59060861-59060880 | None:intergenic | 50.0% | |
| GGGCCATCTGAAGGAACAAT+GGG | + | chr1.2:59060983-59061002 | None:intergenic | 50.0% | |
| GGGTTAACAGTGGTGCAACA+AGG | - | chr1.2:59060790-59060809 | MS.gene40754:intron | 50.0% | |
| GTTGCCCTGATGAAATGGGA+TGG | - | chr1.2:59060853-59060872 | MS.gene40754:intron | 50.0% | |
| TACAGCAGCTGAAGGACCTT+CGG | + | chr1.2:59060141-59060160 | None:intergenic | 50.0% | |
| TATGCAGACTACCCTTCCTG+TGG | - | chr1.2:59061441-59061460 | MS.gene40754:CDS | 50.0% | |
| TGAAATGGGATGGAAGCCAC+AGG | - | chr1.2:59060863-59060882 | MS.gene40754:intron | 50.0% | |
| TGTCTGGTACAGCGGAACAA+GGG | + | chr1.2:59060324-59060343 | None:intergenic | 50.0% | |
| CGGGAGGTAAATTGGATCGC+TGG | - | chr1.2:59061016-59061035 | MS.gene40754:CDS | 55.0% | |
| CGGGCCATCTGAAGGAACAA+TGG | + | chr1.2:59060984-59061003 | None:intergenic | 55.0% | |
| GGAGCAGATGACCAAGACCT+TGG | - | chr1.2:59061462-59061481 | MS.gene40754:CDS | 55.0% | |
| GGTCATCTGCTCCACAGGAA+GGG | + | chr1.2:59061455-59061474 | None:intergenic | 55.0% | |
| GTCTTGGTCATCTGCTCCAC+AGG | + | chr1.2:59061460-59061479 | None:intergenic | 55.0% | |
| TGGTCATCTGCTCCACAGGA+AGG | + | chr1.2:59061456-59061475 | None:intergenic | 55.0% | |
| ! | CTTCGGTTCGCGGAGCAGAA+CGG | - | chr1.2:59061559-59061578 | MS.gene40754:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59060131 | 59061702 | 59060131 | ID=MS.gene40754 |
| chr1.2 | mRNA | 59060131 | 59061702 | 59060131 | ID=MS.gene40754.t1;Parent=MS.gene40754 |
| chr1.2 | exon | 59061430 | 59061702 | 59061430 | ID=MS.gene40754.t1.exon1;Parent=MS.gene40754.t1 |
| chr1.2 | CDS | 59061430 | 59061702 | 59061430 | ID=cds.MS.gene40754.t1;Parent=MS.gene40754.t1 |
| chr1.2 | exon | 59060949 | 59061053 | 59060949 | ID=MS.gene40754.t1.exon2;Parent=MS.gene40754.t1 |
| chr1.2 | CDS | 59060949 | 59061053 | 59060949 | ID=cds.MS.gene40754.t1;Parent=MS.gene40754.t1 |
| chr1.2 | exon | 59060812 | 59060859 | 59060812 | ID=MS.gene40754.t1.exon3;Parent=MS.gene40754.t1 |
| chr1.2 | CDS | 59060812 | 59060859 | 59060812 | ID=cds.MS.gene40754.t1;Parent=MS.gene40754.t1 |
| chr1.2 | exon | 59060131 | 59060385 | 59060131 | ID=MS.gene40754.t1.exon4;Parent=MS.gene40754.t1 |
| chr1.2 | CDS | 59060131 | 59060385 | 59060131 | ID=cds.MS.gene40754.t1;Parent=MS.gene40754.t1 |
| Gene Sequence |
| Protein sequence |