AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058111


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058111.t1 MTR_5g007730 98.458 389 6 0 1 389 1 389 0.0 798
MS.gene058111.t1 MTR_1g098140 97.172 389 11 0 1 389 1 389 0.0 788
MS.gene058111.t1 MTR_7g016820 97.172 389 11 0 1 389 1 389 0.0 787
MS.gene058111.t1 MTR_5g007760 96.401 389 14 0 1 389 1 389 0.0 786
MS.gene058111.t1 MTR_1g097935 96.915 389 12 0 1 389 1 389 0.0 785
MS.gene058111.t1 MTR_1g097910 96.658 389 13 0 1 389 1 389 0.0 785
MS.gene058111.t1 MTR_7g016720 96.915 389 12 0 1 389 1 389 0.0 784
MS.gene058111.t1 MTR_7g016800 96.658 389 13 0 1 389 1 389 0.0 784
MS.gene058111.t1 MTR_7g016700 96.401 389 14 0 1 389 1 389 0.0 783
MS.gene058111.t1 MTR_7g016780 96.144 389 15 0 1 389 1 389 0.0 780
MS.gene058111.t1 MTR_5g007717 95.373 389 18 0 1 389 1 389 0.0 776
MS.gene058111.t1 MTR_5g007713 95.373 389 18 0 1 389 1 389 0.0 776
MS.gene058111.t1 MTR_3g083920 90.206 388 38 0 1 388 1 388 0.0 745
MS.gene058111.t1 MTR_3g083910 89.433 388 41 0 1 388 1 388 0.0 741
MS.gene058111.t1 MTR_2g058470 86.632 389 52 0 1 389 1 389 0.0 713
MS.gene058111.t1 MTR_3g086260 81.443 388 72 0 1 388 1 388 0.0 676
MS.gene058111.t1 MTR_7g084300 79.949 389 78 0 1 389 1 389 0.0 669
MS.gene058111.t1 MTR_7g113405 96.040 303 12 0 87 389 1 303 0.0 598
MS.gene058111.t1 MTR_3g088675 65.810 389 133 0 1 389 1 389 0.0 574
MS.gene058111.t1 MTR_5g007740 80.982 326 62 0 64 389 1 326 0.0 555
MS.gene058111.t1 MTR_5g007723 68.434 396 78 5 12 389 32 398 0.0 530
MS.gene058111.t1 MTR_5g007770 77.667 300 34 2 70 369 1 267 1.62e-167 469
MS.gene058111.t1 MTR_3g088670 48.462 390 187 6 10 388 2 388 1.46e-128 375
MS.gene058111.t1 MTR_4g075560 42.368 380 212 4 11 387 13 388 1.64e-102 308
MS.gene058111.t1 MTR_4g078730 38.070 373 224 2 15 387 24 389 8.38e-94 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058111.t1 AT5G13930 81.701 388 70 1 3 389 8 395 0.0 667
MS.gene058111.t1 AT4G34850 40.849 377 219 3 15 389 18 392 4.04e-98 298
MS.gene058111.t1 AT4G00040 40.153 391 223 6 1 387 2 385 2.88e-96 293
MS.gene058111.t1 AT1G02050 39.075 389 226 6 2 387 12 392 1.11e-87 271
MS.gene058111.t1 AT4G34850 40.312 320 188 2 72 389 1 319 1.34e-82 255

Find 89 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTATATTTGAGATGATT+TGG 0.236890 5.4:+3046555 MS.gene058111:CDS
AGAAGGCCCTGCAACCATTT+TGG 0.256780 5.4:+3045467 MS.gene058111:CDS
CTGATTACAACTCAATCTTT+TGG 0.271084 5.4:+3046732 MS.gene058111:CDS
CTTGTTGGACAAGCACTATT+TGG 0.274988 5.4:+3046479 MS.gene058111:CDS
TGGGGTGTGCTATTCGGTTT+TGG 0.314746 5.4:+3046953 MS.gene058111:CDS
TATCAACTCACTAAACTCTT+AGG 0.335925 5.4:+3046278 MS.gene058111:CDS
ACTTCGTTTGGCTAAAGATT+TGG 0.342769 5.4:+3046364 MS.gene058111:CDS
TGCTGTGCCAATAGCCAAAA+TGG 0.346769 5.4:-3045481 None:intergenic
TGAATACATGGCACCTTCAT+TGG 0.347646 5.4:+3046106 MS.gene058111:CDS
CCAATAGCCAAAATGGTTGC+AGG 0.352617 5.4:-3045474 None:intergenic
GCCATGTATTCACAAACATT+AGG 0.353016 5.4:-3046095 None:intergenic
AGGGAAGTGCTAAGTGAATA+TGG 0.354750 5.4:+3046836 MS.gene058111:CDS
TCTACTTGGTCTAGAATTGC+AGG 0.363913 5.4:-3046773 None:intergenic
TCAATGGCACCTTCACTATC+AGG 0.366123 5.4:-3046596 None:intergenic
CCATGTATTCACAAACATTA+GGG 0.366545 5.4:-3046094 None:intergenic
TGCATGTGTATTGTTTATCT+TGG 0.369086 5.4:+3046871 MS.gene058111:CDS
CATGAATGGGGTGTGCTATT+CGG 0.371221 5.4:+3046947 MS.gene058111:CDS
GGGGCAGCTGCACTTATTGT+TGG 0.371699 5.4:+3046506 MS.gene058111:CDS
AAGTGAGTAATCTTTGACTT+TGG 0.381814 5.4:-3046212 None:intergenic
CACCTTCTTAAAGATGTTCC+TGG 0.385004 5.4:+3046650 MS.gene058111:CDS
CCTTTGAGCCTGACGAATAT+CGG 0.400897 5.4:-3045442 None:intergenic
GGGCAGCTGCACTTATTGTT+GGG 0.412905 5.4:+3046507 MS.gene058111:CDS
ACTCACTTGGACAGTCTTGT+TGG 0.427238 5.4:+3046464 MS.gene058111:CDS
GGTTGAGGCTTTCCAACCAT+TGG 0.429807 5.4:+3046703 MS.gene058111:CDS
GTCCAAATCATCTCAAATAT+AGG 0.429888 5.4:-3046557 None:intergenic
AGTGAAAGCTATAAAAGAAT+GGG 0.430526 5.4:+3046184 MS.gene058111:CDS
AGGTGGCACGGTACTTCGTT+TGG 0.437676 5.4:+3046352 MS.gene058111:CDS
CAAGATGGTTTGAAGACAAC+AGG 0.439919 5.4:+3046917 MS.gene058111:CDS
AACAGGAGAAGGACATGAAT+GGG 0.444037 5.4:+3046934 MS.gene058111:CDS
CCCTAATGTTTGTGAATACA+TGG 0.447676 5.4:+3046094 MS.gene058111:CDS
GATTTGGCTGAGAACAATAA+AGG 0.447965 5.4:+3046380 MS.gene058111:CDS
CACCTGCAAAACAACCTTGT+TGG 0.451176 5.4:-3046334 None:intergenic
GTTGAGGCTTTCCAACCATT+GGG 0.460019 5.4:+3046704 MS.gene058111:CDS
CTTTGTTCAACACAATTGGC+TGG 0.464913 5.4:-3045507 None:intergenic
CCGATATTCGTCAGGCTCAA+AGG 0.467342 5.4:+3045442 MS.gene058111:CDS
CATGTATCTCCTCTTGATCA+TGG 0.469562 5.4:-3046042 None:intergenic
GATGGTCACCTTCGTGAAGC+TGG 0.471329 5.4:+3046617 MS.gene058111:CDS
CAGTGAAAGCTATAAAAGAA+TGG 0.482912 5.4:+3046183 MS.gene058111:CDS
TTCACGAAGGTGACCATCAA+TGG 0.482923 5.4:-3046612 None:intergenic
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 5.4:+3046651 MS.gene058111:CDS
CGATATTCGTCAGGCTCAAA+GGG 0.485417 5.4:+3045443 MS.gene058111:CDS
GACAAGCACTATTTGGAGAT+GGG 0.493473 5.4:+3046486 MS.gene058111:CDS
TCTAGAATTGCAGGACCACC+AGG 0.493617 5.4:-3046764 None:intergenic
TGTGCTTTGTTCAACACAAT+TGG 0.494990 5.4:-3045511 None:intergenic
GATAGTGAAGGTGCCATTGA+TGG 0.501118 5.4:+3046599 MS.gene058111:CDS
GTCACTGCAGTCACATTTCG+TGG 0.502542 5.4:+3046431 MS.gene058111:CDS
GAGTGTGTCCGATATTCGTC+AGG 0.510599 5.4:+3045434 MS.gene058111:CDS
GGACAAGCACTATTTGGAGA+TGG 0.510737 5.4:+3046485 MS.gene058111:CDS
CAACAGGAGAAGGACATGAA+TGG 0.511592 5.4:+3046933 MS.gene058111:CDS
CAAGCGGTGTAGATATGCCT+GGG 0.512423 5.4:+3046249 MS.gene058111:CDS
TATAAATAAAGCATTGGTTG+AGG 0.518859 5.4:+3046688 MS.gene058111:CDS
AATCAGATATTCCCAATGGT+TGG 0.520494 5.4:-3046715 None:intergenic
ACAAGCGGTGTAGATATGCC+TGG 0.526709 5.4:+3046248 MS.gene058111:CDS
GCGCAAGACAACAGTCTCAA+TGG 0.533391 5.4:-3046987 None:intergenic
AGAAAGAAATCAACTCAAGA+TGG 0.548960 5.4:+3046902 MS.gene058111:CDS
TCCCAGGAACATCTTTAAGA+AGG 0.550142 5.4:-3046652 None:intergenic
GTGAGTTGATAATCAGCCCC+AGG 0.553624 5.4:-3046266 None:intergenic
ACAGTCTCAATGGTAAGTCC+TGG 0.565547 5.4:-3046977 None:intergenic
AGGCATATCTACACCGCTTG+TGG 0.567210 5.4:-3046246 None:intergenic
CTGTCCAAGTGAGTATCACT+AGG 0.567310 5.4:-3046455 None:intergenic
GCAGCCTCCTTCCCTAGTCT+AGG 0.573798 5.4:-3046161 None:intergenic
TGGTAGAAGTACCTAGACTA+GGG 0.575927 5.4:+3046150 MS.gene058111:CDS
TCTTGTCTAGCATCCAATGA+AGG 0.577000 5.4:-3046119 None:intergenic
CGAAAAGATGAGAGCCACGA+GGG 0.578056 5.4:+3046817 MS.gene058111:CDS
GTGGTAGAAGTACCTAGACT+AGG 0.578892 5.4:+3046149 MS.gene058111:CDS
GGTTTGAAGACAACAGGAGA+AGG 0.581105 5.4:+3046923 MS.gene058111:CDS
AGAAGTACCTAGACTAGGGA+AGG 0.582711 5.4:+3046154 MS.gene058111:CDS
CGTCAGGCTCAAAGGGCAGA+AGG 0.599084 5.4:+3045450 MS.gene058111:CDS
TTCACTTAGCACTTCCCTCG+TGG 0.607811 5.4:-3046831 None:intergenic
CAATAGCCAAAATGGTTGCA+GGG 0.607881 5.4:-3045473 None:intergenic
GTGACAAATCCATGATCAAG+AGG 0.613469 5.4:+3046033 MS.gene058111:CDS
TTAATCGTTTGCACCACAAG+CGG 0.613703 5.4:+3046233 MS.gene058111:CDS
TTGTAATCAGATATTCCCAA+TGG 0.614179 5.4:-3046719 None:intergenic
ACAAGCACTATTTGGAGATG+GGG 0.614657 5.4:+3046487 MS.gene058111:CDS
AGTACCTAGACTAGGGAAGG+AGG 0.631813 5.4:+3046157 MS.gene058111:CDS
GACTGTTGTCTTGCGCAGTG+TGG 0.633699 5.4:+3046994 MS.gene058111:CDS
GAGATACATGTATCTAACAG+AGG 0.641094 5.4:+3046055 MS.gene058111:CDS
TGGTCCTAGTGATACTCACT+TGG 0.641437 5.4:+3046451 MS.gene058111:CDS
ACAATTGCTCCTGATAGTGA+AGG 0.650851 5.4:+3046587 MS.gene058111:CDS
CCGAAAAGATGAGAGCCACG+AGG 0.666354 5.4:+3046816 MS.gene058111:CDS
GTGAAAGCTATAAAAGAATG+GGG 0.667253 5.4:+3046185 MS.gene058111:CDS
ATTGGATGCTAGACAAGACA+TGG 0.674061 5.4:+3046124 MS.gene058111:CDS
ATGTTAATCCAGCTTCACGA+AGG 0.677588 5.4:-3046625 None:intergenic
TGCTAGACAAGACATGGTGG+TGG 0.691857 5.4:+3046130 MS.gene058111:CDS
AAGCGGTGTAGATATGCCTG+GGG 0.707764 5.4:+3046250 MS.gene058111:CDS
ACAGGAGAAGGACATGAATG+GGG 0.714424 5.4:+3046935 MS.gene058111:CDS
CTAGAATTGCAGGACCACCA+GGG 0.728884 5.4:-3046763 None:intergenic
AGATACATGATGTACCAACA+AGG 0.731164 5.4:+3046320 MS.gene058111:CDS
GGATGCTAGACAAGACATGG+TGG 0.797709 5.4:+3046127 MS.gene058111:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATAAATAAAGCAT+TGG + chr5.4:3046682-3046701 MS.gene058111:CDS 10.0%
!! ATGTTAAAAAAAAAAATGAT+CGG + chr5.4:3045796-3045815 MS.gene058111:intron 10.0%
!! AGTATGTAAAAATTAAATAG+TGG - chr5.4:3045624-3045643 None:intergenic 15.0%
!! CTAATTAATGACATAATAAT+AGG - chr5.4:3045949-3045968 None:intergenic 15.0%
!! AAAAAAAAAAATGATCGGAA+GGG + chr5.4:3045801-3045820 MS.gene058111:intron 20.0%
!! ATTATGTCATTAATTAGTGT+TGG + chr5.4:3045952-3045971 MS.gene058111:intron 20.0%
!! TAAAAAAAAAAATGATCGGA+AGG + chr5.4:3045800-3045819 MS.gene058111:intron 20.0%
!! TCAAATGTAACAACTAAAAA+AGG - chr5.4:3045677-3045696 None:intergenic 20.0%
!!! AGCAATTTTTTTCAACAAAT+AGG + chr5.4:3045845-3045864 MS.gene058111:intron 20.0%
!!! ATCATGTATCTTTTTACATA+TGG - chr5.4:3046311-3046330 None:intergenic 20.0%
!!! TATTTGTTGAAAAAAATTGC+TGG - chr5.4:3045846-3045865 None:intergenic 20.0%
! AGTGAAAGCTATAAAAGAAT+GGG + chr5.4:3046184-3046203 MS.gene058111:CDS 25.0%
! CATTTCTTTATAACTACTTC+AGG + chr5.4:3046011-3046030 MS.gene058111:intron 25.0%
! CTGAAGTAGTTATAAAGAAA+TGG - chr5.4:3046013-3046032 None:intergenic 25.0%
! TTAACATACTCAAAAGTCAA+AGG - chr5.4:3045783-3045802 None:intergenic 25.0%
!! AATATAGGCTTTTCAATTTC+TGG - chr5.4:3046545-3046564 None:intergenic 25.0%
!! TTCGTTTACATTTATTTCTC+TGG + chr5.4:3045645-3045664 MS.gene058111:intron 25.0%
!!! AAGAAATGGCATTAATTTGT+TGG - chr5.4:3045999-3046018 None:intergenic 25.0%
!!! TATAAATAAAGCATTGGTTG+AGG + chr5.4:3046688-3046707 MS.gene058111:CDS 25.0%
AGAAAGAAATCAACTCAAGA+TGG + chr5.4:3046902-3046921 MS.gene058111:CDS 30.0%
CAGTGAAAGCTATAAAAGAA+TGG + chr5.4:3046183-3046202 MS.gene058111:CDS 30.0%
CCATGTATTCACAAACATTA+GGG - chr5.4:3046097-3046116 None:intergenic 30.0%
GTCCAAATCATCTCAAATAT+AGG - chr5.4:3046560-3046579 None:intergenic 30.0%
GTGAAAGCTATAAAAGAATG+GGG + chr5.4:3046185-3046204 MS.gene058111:CDS 30.0%
TATCAACTCACTAAACTCTT+AGG + chr5.4:3046278-3046297 MS.gene058111:CDS 30.0%
TGCATGTGTATTGTTTATCT+TGG + chr5.4:3046871-3046890 MS.gene058111:CDS 30.0%
TTGTAATCAGATATTCCCAA+TGG - chr5.4:3046722-3046741 None:intergenic 30.0%
! AAGTGAGTAATCTTTGACTT+TGG - chr5.4:3046215-3046234 None:intergenic 30.0%
! AGCCTATATTTGAGATGATT+TGG + chr5.4:3046555-3046574 MS.gene058111:CDS 30.0%
! CTGATTACAACTCAATCTTT+TGG + chr5.4:3046732-3046751 MS.gene058111:CDS 30.0%
!!! ATATTTTTTGACACAATCCC+AGG - chr5.4:3046671-3046690 None:intergenic 30.0%
!!! GTGATTTTGAAGTAGAAATC+AGG - chr5.4:3045540-3045559 None:intergenic 30.0%
AATCAGATATTCCCAATGGT+TGG - chr5.4:3046718-3046737 None:intergenic 35.0%
ACCTTCTTAAAGATGTTCCT+GGG + chr5.4:3046651-3046670 MS.gene058111:CDS 35.0%
ACTTCGTTTGGCTAAAGATT+TGG + chr5.4:3046364-3046383 MS.gene058111:CDS 35.0%
AGATACATGATGTACCAACA+AGG + chr5.4:3046320-3046339 MS.gene058111:CDS 35.0%
CCCTAATGTTTGTGAATACA+TGG + chr5.4:3046094-3046113 MS.gene058111:CDS 35.0%
GAGATACATGTATCTAACAG+AGG + chr5.4:3046055-3046074 MS.gene058111:CDS 35.0%
GATTTGGCTGAGAACAATAA+AGG + chr5.4:3046380-3046399 MS.gene058111:CDS 35.0%
GCCATGTATTCACAAACATT+AGG - chr5.4:3046098-3046117 None:intergenic 35.0%
! ATGTATGCACTGCTATTTAG+TGG - chr5.4:3045882-3045901 None:intergenic 35.0%
! TGTGCTTTGTTCAACACAAT+TGG - chr5.4:3045514-3045533 None:intergenic 35.0%
AACAGGAGAAGGACATGAAT+GGG + chr5.4:3046934-3046953 MS.gene058111:CDS 40.0%
ACAAGCACTATTTGGAGATG+GGG + chr5.4:3046487-3046506 MS.gene058111:CDS 40.0%
ATGTTAATCCAGCTTCACGA+AGG - chr5.4:3046628-3046647 None:intergenic 40.0%
ATTGGATGCTAGACAAGACA+TGG + chr5.4:3046124-3046143 MS.gene058111:CDS 40.0%
CAAGATGGTTTGAAGACAAC+AGG + chr5.4:3046917-3046936 MS.gene058111:CDS 40.0%
CAATAGCCAAAATGGTTGCA+GGG - chr5.4:3045476-3045495 None:intergenic 40.0%
CACCTTCTTAAAGATGTTCC+TGG + chr5.4:3046650-3046669 MS.gene058111:CDS 40.0%
CATGTATCTCCTCTTGATCA+TGG - chr5.4:3046045-3046064 None:intergenic 40.0%
CTTGTTGGACAAGCACTATT+TGG + chr5.4:3046479-3046498 MS.gene058111:CDS 40.0%
CTTTGTTCAACACAATTGGC+TGG - chr5.4:3045510-3045529 None:intergenic 40.0%
GACAAGCACTATTTGGAGAT+GGG + chr5.4:3046486-3046505 MS.gene058111:CDS 40.0%
GTGACAAATCCATGATCAAG+AGG + chr5.4:3046033-3046052 MS.gene058111:CDS 40.0%
TCTTGTCTAGCATCCAATGA+AGG - chr5.4:3046122-3046141 None:intergenic 40.0%
TGAATACATGGCACCTTCAT+TGG + chr5.4:3046106-3046125 MS.gene058111:CDS 40.0%
TTAATCGTTTGCACCACAAG+CGG + chr5.4:3046233-3046252 MS.gene058111:CDS 40.0%
! ACAATTGCTCCTGATAGTGA+AGG + chr5.4:3046587-3046606 MS.gene058111:CDS 40.0%
! AGGCTAACTTTTGCTCTACT+TGG - chr5.4:3046790-3046809 None:intergenic 40.0%
! TCCCAGGAACATCTTTAAGA+AGG - chr5.4:3046655-3046674 None:intergenic 40.0%
! TCTACTTGGTCTAGAATTGC+AGG - chr5.4:3046776-3046795 None:intergenic 40.0%
!! AGGGAAGTGCTAAGTGAATA+TGG + chr5.4:3046836-3046855 MS.gene058111:CDS 40.0%
!! TACCAACAAGGTTGTTTTGC+AGG + chr5.4:3046332-3046351 MS.gene058111:CDS 40.0%
!! TGGTAGAAGTACCTAGACTA+GGG + chr5.4:3046150-3046169 MS.gene058111:CDS 40.0%
!!! GGCTTTTCAATTTCTGGTAG+CGG - chr5.4:3046539-3046558 None:intergenic 40.0%
ACAGGAGAAGGACATGAATG+GGG + chr5.4:3046935-3046954 MS.gene058111:CDS 45.0%
ACAGTCTCAATGGTAAGTCC+TGG - chr5.4:3046980-3046999 None:intergenic 45.0%
CAACAGGAGAAGGACATGAA+TGG + chr5.4:3046933-3046952 MS.gene058111:CDS 45.0%
CACCTGCAAAACAACCTTGT+TGG - chr5.4:3046337-3046356 None:intergenic 45.0%
CCAATAGCCAAAATGGTTGC+AGG - chr5.4:3045477-3045496 None:intergenic 45.0%
CCTTTGAGCCTGACGAATAT+CGG - chr5.4:3045445-3045464 None:intergenic 45.0%
CGATATTCGTCAGGCTCAAA+GGG + chr5.4:3045443-3045462 MS.gene058111:CDS 45.0%
CTGTCCAAGTGAGTATCACT+AGG - chr5.4:3046458-3046477 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG + chr5.4:3046485-3046504 MS.gene058111:CDS 45.0%
GGTTTGAAGACAACAGGAGA+AGG + chr5.4:3046923-3046942 MS.gene058111:CDS 45.0%
GTTGAGGCTTTCCAACCATT+GGG + chr5.4:3046704-3046723 MS.gene058111:CDS 45.0%
TCAATGGCACCTTCACTATC+AGG - chr5.4:3046599-3046618 None:intergenic 45.0%
TGCTGTGCCAATAGCCAAAA+TGG - chr5.4:3045484-3045503 None:intergenic 45.0%
TGGTCCTAGTGATACTCACT+TGG + chr5.4:3046451-3046470 MS.gene058111:CDS 45.0%
TTCACGAAGGTGACCATCAA+TGG - chr5.4:3046615-3046634 None:intergenic 45.0%
! ACTCACTTGGACAGTCTTGT+TGG + chr5.4:3046464-3046483 MS.gene058111:CDS 45.0%
! ATCTTTTGGATTGCACACCC+TGG + chr5.4:3046746-3046765 MS.gene058111:CDS 45.0%
! CATGAATGGGGTGTGCTATT+CGG + chr5.4:3046947-3046966 MS.gene058111:CDS 45.0%
!! AGAAGTACCTAGACTAGGGA+AGG + chr5.4:3046154-3046173 MS.gene058111:CDS 45.0%
!! CAACAAGGTTGTTTTGCAGG+TGG + chr5.4:3046335-3046354 MS.gene058111:CDS 45.0%
!! GATAGTGAAGGTGCCATTGA+TGG + chr5.4:3046599-3046618 MS.gene058111:CDS 45.0%
!! GTGGTAGAAGTACCTAGACT+AGG + chr5.4:3046149-3046168 MS.gene058111:CDS 45.0%
!! TCTCATCTTTTCGGGCTTCA+AGG - chr5.4:3046810-3046829 None:intergenic 45.0%
!!! CCTGCAACCATTTTGGCTAT+TGG + chr5.4:3045474-3045493 MS.gene058111:CDS 45.0%
AAGCGGTGTAGATATGCCTG+GGG + chr5.4:3046250-3046269 MS.gene058111:CDS 50.0%
ACAAGCGGTGTAGATATGCC+TGG + chr5.4:3046248-3046267 MS.gene058111:CDS 50.0%
AGGCATATCTACACCGCTTG+TGG - chr5.4:3046249-3046268 None:intergenic 50.0%
AGTACCTAGACTAGGGAAGG+AGG + chr5.4:3046157-3046176 MS.gene058111:CDS 50.0%
CAAGCGGTGTAGATATGCCT+GGG + chr5.4:3046249-3046268 MS.gene058111:CDS 50.0%
CCGATATTCGTCAGGCTCAA+AGG + chr5.4:3045442-3045461 MS.gene058111:CDS 50.0%
CGAAAAGATGAGAGCCACGA+GGG + chr5.4:3046817-3046836 MS.gene058111:CDS 50.0%
CTAGAATTGCAGGACCACCA+GGG - chr5.4:3046766-3046785 None:intergenic 50.0%
GAGTGTGTCCGATATTCGTC+AGG + chr5.4:3045434-3045453 MS.gene058111:CDS 50.0%
GCGCAAGACAACAGTCTCAA+TGG - chr5.4:3046990-3047009 None:intergenic 50.0%
GGATGCTAGACAAGACATGG+TGG + chr5.4:3046127-3046146 MS.gene058111:CDS 50.0%
GGGCAGCTGCACTTATTGTT+GGG + chr5.4:3046507-3046526 MS.gene058111:CDS 50.0%
GGTTGAGGCTTTCCAACCAT+TGG + chr5.4:3046703-3046722 MS.gene058111:CDS 50.0%
GTCACTGCAGTCACATTTCG+TGG + chr5.4:3046431-3046450 MS.gene058111:CDS 50.0%
TGCTAGACAAGACATGGTGG+TGG + chr5.4:3046130-3046149 MS.gene058111:CDS 50.0%
TTCACTTAGCACTTCCCTCG+TGG - chr5.4:3046834-3046853 None:intergenic 50.0%
! AGAAGGCCCTGCAACCATTT+TGG + chr5.4:3045467-3045486 MS.gene058111:CDS 50.0%
! CCTCGTGGCTCTCATCTTTT+CGG - chr5.4:3046819-3046838 None:intergenic 50.0%
! CTCGTGGCTCTCATCTTTTC+GGG - chr5.4:3046818-3046837 None:intergenic 50.0%
! TCTAGAATTGCAGGACCACC+AGG - chr5.4:3046767-3046786 None:intergenic 50.0%
! TTTTGGATTGCACACCCTGG+TGG + chr5.4:3046749-3046768 MS.gene058111:CDS 50.0%
!! AGGTTGTTTTGCAGGTGGCA+CGG + chr5.4:3046340-3046359 MS.gene058111:CDS 50.0%
!! GTGAGTTGATAATCAGCCCC+AGG - chr5.4:3046269-3046288 None:intergenic 50.0%
!! TGGGGTGTGCTATTCGGTTT+TGG + chr5.4:3046953-3046972 MS.gene058111:CDS 50.0%
!!! GTGCTATTCGGTTTTGGACC+AGG + chr5.4:3046959-3046978 MS.gene058111:CDS 50.0%
AGGTGGCACGGTACTTCGTT+TGG + chr5.4:3046352-3046371 MS.gene058111:CDS 55.0%
CCGAAAAGATGAGAGCCACG+AGG + chr5.4:3046816-3046835 MS.gene058111:CDS 55.0%
GACTGTTGTCTTGCGCAGTG+TGG + chr5.4:3046994-3047013 MS.gene058111:CDS 55.0%
GATGGTCACCTTCGTGAAGC+TGG + chr5.4:3046617-3046636 MS.gene058111:CDS 55.0%
GGGGCAGCTGCACTTATTGT+TGG + chr5.4:3046506-3046525 MS.gene058111:CDS 55.0%
CGTCAGGCTCAAAGGGCAGA+AGG + chr5.4:3045450-3045469 MS.gene058111:CDS 60.0%
GCAGCCTCCTTCCCTAGTCT+AGG - chr5.4:3046164-3046183 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 3045429 3047024 3045429 ID=MS.gene058111
chr5.4 mRNA 3045429 3047024 3045429 ID=MS.gene058111.t1;Parent=MS.gene058111
chr5.4 exon 3045429 3045606 3045429 ID=MS.gene058111.t1.exon1;Parent=MS.gene058111.t1
chr5.4 CDS 3045429 3045606 3045429 ID=cds.MS.gene058111.t1;Parent=MS.gene058111.t1
chr5.4 exon 3046033 3047024 3046033 ID=MS.gene058111.t1.exon2;Parent=MS.gene058111.t1
chr5.4 CDS 3046033 3047024 3046033 ID=cds.MS.gene058111.t1;Parent=MS.gene058111.t1
Gene Sequence

>MS.gene058111

ATGGTGAGTGTGTCCGATATTCGTCAGGCTCAAAGGGCAGAAGGCCCTGCAACCATTTTGGCTATTGGCACAGCAAATCCAGCCAATTGTGTTGAACAAAGCACATATCCTGATTTCTACTTCAAAATCACAAACAGTGAGCACAAAGTTGAACTCAAAGAGAAATTTCAACGCATGTGTATGTATTCTTTTCCACTATTTAATTTTTACATACTTTTCGTTTACATTTATTTCTCTGGTATTTTCCTTTTTTAGTTGTTACATTTGAAAATATTTAACTCATACTTCGTAGTAAAGTCACTCATGATATTAAATTTGCTAACAAATTCGATGAAAATTATTTTCTTTTAACCTTTGACTTTTGAGTATGTTAAAAAAAAAAATGATCGGAAGGGTACAACATACAATGTGTGTCCAGCAATTTTTTTCAACAAATAGGAGTATTATTCACCACTAAATAGCAGTGCATACATATGACTATAACATGATAAAAATGCAAATTATTTGCATTATGAAACCTATTATTATGTCATTAATTAGTGTTGGTATTATCTCAAAATTGTTGCACCAACAAATTAATGCCATTTCTTTATAACTACTTCAGGTGACAAATCCATGATCAAGAGGAGATACATGTATCTAACAGAGGAGATTTTAAAAGAGAACCCTAATGTTTGTGAATACATGGCACCTTCATTGGATGCTAGACAAGACATGGTGGTGGTAGAAGTACCTAGACTAGGGAAGGAGGCTGCAGTGAAAGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATCGTTTGCACCACAAGCGGTGTAGATATGCCTGGGGCTGATTATCAACTCACTAAACTCTTAGGTCTTCATCCATATGTAAAAAGATACATGATGTACCAACAAGGTTGTTTTGCAGGTGGCACGGTACTTCGTTTGGCTAAAGATTTGGCTGAGAACAATAAAGGAGCTCGTGTGCTAGTTGTTTGTTCTGAAGTCACTGCAGTCACATTTCGTGGTCCTAGTGATACTCACTTGGACAGTCTTGTTGGACAAGCACTATTTGGAGATGGGGCAGCTGCACTTATTGTTGGGTCTGATCCGCTACCAGAAATTGAAAAGCCTATATTTGAGATGATTTGGACTGCACAAACAATTGCTCCTGATAGTGAAGGTGCCATTGATGGTCACCTTCGTGAAGCTGGATTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTGTCAAAAAATATAAATAAAGCATTGGTTGAGGCTTTCCAACCATTGGGAATATCTGATTACAACTCAATCTTTTGGATTGCACACCCTGGTGGTCCTGCAATTCTAGACCAAGTAGAGCAAAAGTTAGCCTTGAAGCCCGAAAAGATGAGAGCCACGAGGGAAGTGCTAAGTGAATATGGAAATATGTCAAGTGCATGTGTATTGTTTATCTTGGATGAAATGAGAAAGAAATCAACTCAAGATGGTTTGAAGACAACAGGAGAAGGACATGAATGGGGTGTGCTATTCGGTTTTGGACCAGGACTTACCATTGAGACTGTTGTCTTGCGCAGTGTGGCTATATGA

Protein sequence

>MS.gene058111.t1

MVSVSDIRQAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLHPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPLPEIEKPIFEMIWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLKTTGEGHEWGVLFGFGPGLTIETVVLRSVAI