AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40792.t1 MTR_1g084010 93.636 330 19 2 61 389 1 329 0.0 642
MS.gene40792.t1 MTR_4g007710 43.781 201 106 1 42 235 65 265 1.34e-46 167
MS.gene40792.t1 MTR_4g130310 41.964 224 103 4 42 249 56 268 7.31e-46 164
MS.gene40792.t1 MTR_4g130310 41.964 224 103 4 42 249 56 268 7.82e-46 164
MS.gene40792.t1 MTR_6g013040 49.669 151 65 3 85 233 48 189 7.57e-36 130
MS.gene40792.t1 MTR_6g013260 47.682 151 68 3 85 233 48 189 2.71e-33 124
MS.gene40792.t1 MTR_4g130340 34.862 218 120 6 42 242 20 232 7.68e-26 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40792.t1 AT2G24100 45.274 201 105 2 42 237 64 264 1.93e-51 179
MS.gene40792.t1 AT4G30780 45.349 172 94 0 65 236 119 290 6.12e-46 166
MS.gene40792.t1 AT3G05770 41.546 207 105 5 43 234 26 231 1.56e-36 137
MS.gene40792.t1 AT3G05770 41.546 207 105 5 43 234 26 231 2.77e-36 137
MS.gene40792.t1 AT1G54300 42.197 173 90 4 85 248 1 172 8.74e-35 130

Find 80 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAATACACACCGGTATT+TGG 0.205957 1.2:-59505621 None:intergenic
ATCATCATTGTTGGATAATA+AGG 0.246670 1.2:-59504541 None:intergenic
GGCTAAATATCCTGCGGATT+TGG 0.299643 1.2:+59505206 MS.gene40792:CDS
TAAATGTGAATCAAAATAAA+TGG 0.303091 1.2:-59505909 None:intergenic
TCAATTGATTGAGCAACATT+TGG 0.312130 1.2:-59506405 None:intergenic
ACAGTATGCTTTCCAGGCTT+TGG 0.324988 1.2:-59505560 None:intergenic
GTCCACACAGTATGCTTTCC+AGG 0.336867 1.2:-59505566 None:intergenic
TGCACAAACTACATATAATA+TGG 0.344645 1.2:+59504563 MS.gene40792:CDS
TTCGGAAACCACCTCGGTTA+TGG 0.364126 1.2:+59505967 MS.gene40792:CDS
TTGATTCACATTTAGATAAG+AGG 0.366276 1.2:+59505918 MS.gene40792:CDS
TTATGACACTAAACTTTCAA+TGG 0.371170 1.2:+59506218 MS.gene40792:CDS
CAATTGATTGAGCAACATTT+GGG 0.379679 1.2:-59506404 None:intergenic
TATATATGGCACACATTAAC+GGG 0.380029 1.2:+59504499 None:intergenic
AATTATAACAACCCAACTTC+AGG 0.388515 1.2:+59506031 MS.gene40792:CDS
CAACTTTCTTAATTTCTAGT+TGG 0.407448 1.2:-59504961 None:intergenic
CTATATATGGCACACATTAA+CGG 0.414587 1.2:+59504498 None:intergenic
TAAGAAAGTTGAGAAGTTGA+AGG 0.416658 1.2:+59504973 MS.gene40792:CDS
ACCTGGTATTCTTGAAATTG+AGG 0.425809 1.2:+59505353 MS.gene40792:CDS
TGCCAAGTTGTTGAATTTGT+TGG 0.427193 1.2:-59505991 None:intergenic
ACCCGAGGGGTAGCGTATGC+TGG 0.437558 1.2:-59504856 None:intergenic
ATACAAGCACAGAGTTTGAT+TGG 0.447333 1.2:+59506451 MS.gene40792:CDS
AAATAAATGGCATGTGAACT+AGG 0.450557 1.2:-59505896 None:intergenic
ATCCGATGATGTCTTCCTCT+TGG 0.452740 1.2:+59506181 MS.gene40792:CDS
AGTTTGTGCATCATCATTGT+TGG 0.456099 1.2:-59504550 None:intergenic
GCAAGAGCTTTGCGTAGTAT+TGG 0.456400 1.2:-59505832 None:intergenic
CAATGTATATGCTCATCATC+GGG 0.459064 1.2:+59505008 MS.gene40792:CDS
TGGTTCTATCTCACGAAAGA+AGG 0.461407 1.2:-59505540 None:intergenic
GTGAACTAGGAAATGGTCTC+TGG 0.469543 1.2:-59505883 None:intergenic
ATGTCTTCCTCTTGGAGTCA+AGG 0.477708 1.2:+59506189 MS.gene40792:CDS
TCATCATTGTTGGATAATAA+GGG 0.478032 1.2:-59504540 None:intergenic
GCAATGTGATAATCGATTGT+TGG 0.481316 1.2:+59505853 MS.gene40792:CDS
CACACATTAACGGGTATGAC+TGG 0.489472 1.2:+59504508 MS.gene40792:CDS
ATGGCATGTGAACTAGGAAA+TGG 0.490679 1.2:-59505890 None:intergenic
CACTATCTTCAATTCCCTGC+GGG 0.494323 1.2:+59505800 MS.gene40792:CDS
CCAATGTATATGCTCATCAT+CGG 0.494723 1.2:+59505007 MS.gene40792:CDS
ATCAAACTCTGTGCTTGTAT+TGG 0.495553 1.2:-59506448 None:intergenic
TCTGTGAATGGAAGCATGTC+AGG 0.501679 1.2:-59504896 None:intergenic
TCCCAGCATACGCTACCCCT+CGG 0.503491 1.2:+59504854 MS.gene40792:CDS
CCCGAGGGGTAGCGTATGCT+GGG 0.507263 1.2:-59504855 None:intergenic
TTTAACCAATCTGGTCCACT+TGG 0.513737 1.2:-59506276 None:intergenic
ATCACTCATATGTGTTGTGT+TGG 0.521431 1.2:-59506364 None:intergenic
CGTGAGATAGAACCAAAGCC+TGG 0.526485 1.2:+59505548 MS.gene40792:CDS
ATGGTCAAGCTTCCAAATAC+CGG 0.532198 1.2:+59505609 MS.gene40792:CDS
CCCAGCATACGCTACCCCTC+GGG 0.538590 1.2:+59504855 MS.gene40792:CDS
TGGTTAAAATATGAAATGCC+TGG 0.539462 1.2:+59506291 MS.gene40792:CDS
AACATTTGGGCAAACTACAC+TGG 0.542754 1.2:-59506391 None:intergenic
GTTCTTGAGGATAATTTACC+TGG 0.542989 1.2:+59505336 MS.gene40792:CDS
TTGTTATAATTAGAAATTCG+AGG 0.545157 1.2:-59506019 None:intergenic
CACAACCAAGTGGACCAGAT+TGG 0.548380 1.2:+59506271 MS.gene40792:CDS
ACCTCAATTTCAAGAATACC+AGG 0.549550 1.2:-59505354 None:intergenic
GCTTGTATGCAACTTGCATG+TGG 0.558794 1.2:-59506249 None:intergenic
ATCCTCAAGAACAGCTCGAA+TGG 0.565864 1.2:-59505325 None:intergenic
AGGAAAAGATTGAAATACAC+TGG 0.565956 1.2:+59505289 MS.gene40792:CDS
CACATTAATAACATGTTGCT+AGG 0.570999 1.2:+59506315 MS.gene40792:CDS
AACTTAGCTACCAAATCCGC+AGG 0.571581 1.2:-59505216 None:intergenic
GACCAACAAATTCAACAACT+TGG 0.574314 1.2:+59505989 MS.gene40792:CDS
ATGCTAAACGAAAATTAGTG+TGG 0.582385 1.2:+59505244 MS.gene40792:CDS
TGCTAAACGAAAATTAGTGT+GGG 0.586021 1.2:+59505245 MS.gene40792:CDS
TATTGGTCAAGAGCTCCCGC+AGG 0.586191 1.2:-59505815 None:intergenic
ATGAAAGCCTTGACTCCAAG+AGG 0.593005 1.2:-59506196 None:intergenic
AGCCATTCGAGCTGTTCTTG+AGG 0.594740 1.2:+59505323 MS.gene40792:CDS
ATTAATAACATGTTGCTAGG+AGG 0.596689 1.2:+59506318 MS.gene40792:CDS
CAATGTGAGCTTTAACCCGA+GGG 0.604117 1.2:-59504870 None:intergenic
CCGATGATGAGCATATACAT+TGG 0.607385 1.2:-59505007 None:intergenic
TTATCTCAAGACTTCACTCA+TGG 0.608814 1.2:+59505590 MS.gene40792:CDS
CTCCAAGAGGAAGACATCAT+CGG 0.624470 1.2:-59506183 None:intergenic
TCATGATTCGGAAACCACCT+CGG 0.629904 1.2:+59505961 MS.gene40792:CDS
TCTATCTCACGAAAGAAGGA+TGG 0.633339 1.2:-59505536 None:intergenic
TCAATGTGAGCTTTAACCCG+AGG 0.635603 1.2:-59504871 None:intergenic
TGCATACAAGCACAACCAAG+TGG 0.636072 1.2:+59506261 MS.gene40792:CDS
CTTGTATGCAACTTGCATGT+GGG 0.636807 1.2:-59506248 None:intergenic
ATTGGTCAAGAGCTCCCGCA+GGG 0.636842 1.2:-59505814 None:intergenic
AACATGTTATTAATGTGACC+AGG 0.650975 1.2:-59506309 None:intergenic
TTGTTGGTCCATAACCGAGG+TGG 0.653005 1.2:-59505975 None:intergenic
ACTCTGTGCTTGTATTGGTG+TGG 0.654780 1.2:-59506443 None:intergenic
AATTTGTTGGTCCATAACCG+AGG 0.660496 1.2:-59505978 None:intergenic
GATTGAGGCTAAATATCCTG+CGG 0.698085 1.2:+59505200 MS.gene40792:intron
GCACTATCTTCAATTCCCTG+CGG 0.709159 1.2:+59505799 MS.gene40792:CDS
AGCCTGGAAAGCATACTGTG+TGG 0.716579 1.2:+59505564 MS.gene40792:CDS
AATGTGAGCTTTAACCCGAG+GGG 0.753488 1.2:-59504869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATCTAAGTAACAT+AGG - chr1.2:59504617-59504636 None:intergenic 15.0%
!! AAAGAATAACAACATTAATT+TGG + chr1.2:59504781-59504800 MS.gene40792:intron 15.0%
!! TAAATGTGAATCAAAATAAA+TGG - chr1.2:59505912-59505931 None:intergenic 15.0%
!! AATAAAACCTCGAATATTAT+GGG - chr1.2:59505133-59505152 None:intergenic 20.0%
!! TAATAAAACCTCGAATATTA+TGG - chr1.2:59505134-59505153 None:intergenic 20.0%
!! TTATGGAATACTATAATCAA+TGG - chr1.2:59506069-59506088 None:intergenic 20.0%
!! TTGTTATAATTAGAAATTCG+AGG - chr1.2:59506022-59506041 None:intergenic 20.0%
!!! ACTTAATTTTTCTCATGATT+CGG + chr1.2:59505949-59505968 MS.gene40792:CDS 20.0%
!!! ATATATCATTTTGTCATTGA+TGG + chr1.2:59505752-59505771 MS.gene40792:intron 20.0%
!!! ATTTCATATTTTAACCAATC+TGG - chr1.2:59506288-59506307 None:intergenic 20.0%
!!! GTATAGATGTTAATTTTCAT+TGG + chr1.2:59505486-59505505 MS.gene40792:intron 20.0%
! ACTAATAATTACGTGCATTA+AGG + chr1.2:59504680-59504699 MS.gene40792:intron 25.0%
! ATCATCATTGTTGGATAATA+AGG - chr1.2:59504544-59504563 None:intergenic 25.0%
! TCATCATTGTTGGATAATAA+GGG - chr1.2:59504543-59504562 None:intergenic 25.0%
! TGCACAAACTACATATAATA+TGG + chr1.2:59504563-59504582 MS.gene40792:CDS 25.0%
! TTATGACACTAAACTTTCAA+TGG + chr1.2:59506218-59506237 MS.gene40792:CDS 25.0%
! TTGATTCACATTTAGATAAG+AGG + chr1.2:59505918-59505937 MS.gene40792:CDS 25.0%
!! ATTTTATCTCTTCTAATGTC+AGG + chr1.2:59504805-59504824 MS.gene40792:intron 25.0%
!! GTTTTCATCCAAAAGTAAAA+AGG - chr1.2:59505665-59505684 None:intergenic 25.0%
!! TTATTCCACCTTTTTACTTT+TGG + chr1.2:59505654-59505673 MS.gene40792:intron 25.0%
!!! CAACTTTCTTAATTTCTAGT+TGG - chr1.2:59504964-59504983 None:intergenic 25.0%
AAATAAATGGCATGTGAACT+AGG - chr1.2:59505899-59505918 None:intergenic 30.0%
AACATGTTATTAATGTGACC+AGG - chr1.2:59506312-59506331 None:intergenic 30.0%
AATAAGTCCCATAATATTCG+AGG + chr1.2:59505123-59505142 MS.gene40792:intron 30.0%
AATTATAACAACCCAACTTC+AGG + chr1.2:59506031-59506050 MS.gene40792:CDS 30.0%
AGGAAAAGATTGAAATACAC+TGG + chr1.2:59505289-59505308 MS.gene40792:CDS 30.0%
AGTAAAAAGGTGGAATAATG+TGG - chr1.2:59505652-59505671 None:intergenic 30.0%
ATGCTAAACGAAAATTAGTG+TGG + chr1.2:59505244-59505263 MS.gene40792:CDS 30.0%
ATTAATAACATGTTGCTAGG+AGG + chr1.2:59506318-59506337 MS.gene40792:CDS 30.0%
CAATTGATTGAGCAACATTT+GGG - chr1.2:59506407-59506426 None:intergenic 30.0%
CACATTAATAACATGTTGCT+AGG + chr1.2:59506315-59506334 MS.gene40792:CDS 30.0%
CGAATATTATGGGACTTATT+AGG - chr1.2:59505123-59505142 None:intergenic 30.0%
GGTTAAAAAGAAATACACAC+CGG - chr1.2:59505631-59505650 None:intergenic 30.0%
TAAGAAAGTTGAGAAGTTGA+AGG + chr1.2:59504973-59504992 MS.gene40792:CDS 30.0%
TCAATTGATTGAGCAACATT+TGG - chr1.2:59506408-59506427 None:intergenic 30.0%
TGAGCACACATGTATTATTA+TGG - chr1.2:59506086-59506105 None:intergenic 30.0%
TGCTAAACGAAAATTAGTGT+GGG + chr1.2:59505245-59505264 MS.gene40792:CDS 30.0%
TGGTTAAAATATGAAATGCC+TGG + chr1.2:59506291-59506310 MS.gene40792:CDS 30.0%
TTCATCCAAAAGTAAAAAGG+TGG - chr1.2:59505662-59505681 None:intergenic 30.0%
! AAATTTTTGCTACCTGAAGT+TGG - chr1.2:59506046-59506065 None:intergenic 30.0%
! AATTTTTGCTACCTGAAGTT+GGG - chr1.2:59506045-59506064 None:intergenic 30.0%
! TACCATGCATGTTTTGTATA+TGG + chr1.2:59504732-59504751 MS.gene40792:intron 30.0%
! TTGTGTTGGATTCATTTTCT+GGG - chr1.2:59506353-59506372 None:intergenic 30.0%
!! TTCATGTTTTGTTCTGTGAA+TGG - chr1.2:59504911-59504930 None:intergenic 30.0%
AAGAAATACACACCGGTATT+TGG - chr1.2:59505624-59505643 None:intergenic 35.0%
AATATTTCTTTCTGCTCAGG+AGG + chr1.2:59505777-59505796 MS.gene40792:intron 35.0%
ACCTCAATTTCAAGAATACC+AGG - chr1.2:59505357-59505376 None:intergenic 35.0%
ACCTGGTATTCTTGAAATTG+AGG + chr1.2:59505353-59505372 MS.gene40792:CDS 35.0%
AGTTTGTGCATCATCATTGT+TGG - chr1.2:59504553-59504572 None:intergenic 35.0%
ATACAAGCACAGAGTTTGAT+TGG + chr1.2:59506451-59506470 MS.gene40792:CDS 35.0%
ATCAAACTCTGTGCTTGTAT+TGG - chr1.2:59506451-59506470 None:intergenic 35.0%
ATCACTCATATGTGTTGTGT+TGG - chr1.2:59506367-59506386 None:intergenic 35.0%
CAATGTATATGCTCATCATC+GGG + chr1.2:59505008-59505027 MS.gene40792:CDS 35.0%
CCAATGTATATGCTCATCAT+CGG + chr1.2:59505007-59505026 MS.gene40792:CDS 35.0%
CTCCATATACAAAACATGCA+TGG - chr1.2:59504737-59504756 None:intergenic 35.0%
GACCAACAAATTCAACAACT+TGG + chr1.2:59505989-59506008 MS.gene40792:CDS 35.0%
GCAAATATTTCTTTCTGCTC+AGG + chr1.2:59505774-59505793 MS.gene40792:intron 35.0%
GCAATGTGATAATCGATTGT+TGG + chr1.2:59505853-59505872 MS.gene40792:CDS 35.0%
GGTACTTCTTTCTTTAATGC+AGG + chr1.2:59505374-59505393 MS.gene40792:intron 35.0%
GTTCTTGAGGATAATTTACC+TGG + chr1.2:59505336-59505355 MS.gene40792:CDS 35.0%
TGCCAAGTTGTTGAATTTGT+TGG - chr1.2:59505994-59506013 None:intergenic 35.0%
TTATCTCAAGACTTCACTCA+TGG + chr1.2:59505590-59505609 MS.gene40792:CDS 35.0%
! CATGCATGTTTTGTATATGG+AGG + chr1.2:59504735-59504754 MS.gene40792:intron 35.0%
! GATTTTGCGTGATGGTTTAA+AGG + chr1.2:59505269-59505288 MS.gene40792:CDS 35.0%
! GTTGTGTTGGATTCATTTTC+TGG - chr1.2:59506354-59506373 None:intergenic 35.0%
!!! TGGATTCATTTTCTGGGATA+TGG - chr1.2:59506347-59506366 None:intergenic 35.0%
AACATTTGGGCAAACTACAC+TGG - chr1.2:59506394-59506413 None:intergenic 40.0%
ATGGCATGTGAACTAGGAAA+TGG - chr1.2:59505893-59505912 None:intergenic 40.0%
ATGGTCAAGCTTCCAAATAC+CGG + chr1.2:59505609-59505628 MS.gene40792:CDS 40.0%
CCGATGATGAGCATATACAT+TGG - chr1.2:59505010-59505029 None:intergenic 40.0%
CTTGTATGCAACTTGCATGT+GGG - chr1.2:59506251-59506270 None:intergenic 40.0%
GATTGAGGCTAAATATCCTG+CGG + chr1.2:59505200-59505219 MS.gene40792:intron 40.0%
TCTATCTCACGAAAGAAGGA+TGG - chr1.2:59505539-59505558 None:intergenic 40.0%
TTTAACCAATCTGGTCCACT+TGG - chr1.2:59506279-59506298 None:intergenic 40.0%
! TGGTTCTATCTCACGAAAGA+AGG - chr1.2:59505543-59505562 None:intergenic 40.0%
!! AATTTGTTGGTCCATAACCG+AGG - chr1.2:59505981-59506000 None:intergenic 40.0%
AACTTAGCTACCAAATCCGC+AGG - chr1.2:59505219-59505238 None:intergenic 45.0%
ACAGTATGCTTTCCAGGCTT+TGG - chr1.2:59505563-59505582 None:intergenic 45.0%
ATCCGATGATGTCTTCCTCT+TGG + chr1.2:59506181-59506200 MS.gene40792:CDS 45.0%
ATCCTCAAGAACAGCTCGAA+TGG - chr1.2:59505328-59505347 None:intergenic 45.0%
ATGAAAGCCTTGACTCCAAG+AGG - chr1.2:59506199-59506218 None:intergenic 45.0%
ATGGTACGTGTGTGTGTAGT+AGG - chr1.2:59504718-59504737 None:intergenic 45.0%
ATGTCTTCCTCTTGGAGTCA+AGG + chr1.2:59506189-59506208 MS.gene40792:CDS 45.0%
CACTATCTTCAATTCCCTGC+GGG + chr1.2:59505800-59505819 MS.gene40792:CDS 45.0%
CTCCAAGAGGAAGACATCAT+CGG - chr1.2:59506186-59506205 None:intergenic 45.0%
GCAAGAGCTTTGCGTAGTAT+TGG - chr1.2:59505835-59505854 None:intergenic 45.0%
GCACTATCTTCAATTCCCTG+CGG + chr1.2:59505799-59505818 MS.gene40792:CDS 45.0%
GCTTGTATGCAACTTGCATG+TGG - chr1.2:59506252-59506271 None:intergenic 45.0%
GGCTAAATATCCTGCGGATT+TGG + chr1.2:59505206-59505225 MS.gene40792:CDS 45.0%
GTGAACTAGGAAATGGTCTC+TGG - chr1.2:59505886-59505905 None:intergenic 45.0%
TGCATACAAGCACAACCAAG+TGG + chr1.2:59506261-59506280 MS.gene40792:CDS 45.0%
! AATGTGAGCTTTAACCCGAG+GGG - chr1.2:59504872-59504891 None:intergenic 45.0%
! ACTCTGTGCTTGTATTGGTG+TGG - chr1.2:59506446-59506465 None:intergenic 45.0%
! CAATGTGAGCTTTAACCCGA+GGG - chr1.2:59504873-59504892 None:intergenic 45.0%
! CACACATTAACGGGTATGAC+TGG + chr1.2:59504508-59504527 MS.gene40792:CDS 45.0%
! GCTCATCATCGGGTTTTTCA+AGG + chr1.2:59505018-59505037 MS.gene40792:CDS 45.0%
! TCAATGTGAGCTTTAACCCG+AGG - chr1.2:59504874-59504893 None:intergenic 45.0%
! TCATGATTCGGAAACCACCT+CGG + chr1.2:59505961-59505980 MS.gene40792:CDS 45.0%
! TCTGTGAATGGAAGCATGTC+AGG - chr1.2:59504899-59504918 None:intergenic 45.0%
AGCCATTCGAGCTGTTCTTG+AGG + chr1.2:59505323-59505342 MS.gene40792:CDS 50.0%
CACAACCAAGTGGACCAGAT+TGG + chr1.2:59506271-59506290 MS.gene40792:CDS 50.0%
CGTGAGATAGAACCAAAGCC+TGG + chr1.2:59505548-59505567 MS.gene40792:CDS 50.0%
GTCCACACAGTATGCTTTCC+AGG - chr1.2:59505569-59505588 None:intergenic 50.0%
TATGCTGCGCATGCAGATTG+AGG + chr1.2:59505185-59505204 MS.gene40792:intron 50.0%
TTCGGAAACCACCTCGGTTA+TGG + chr1.2:59505967-59505986 MS.gene40792:CDS 50.0%
TTGTTGGTCCATAACCGAGG+TGG - chr1.2:59505978-59505997 None:intergenic 50.0%
! AGCCTGGAAAGCATACTGTG+TGG + chr1.2:59505564-59505583 MS.gene40792:CDS 50.0%
! GTGTGGGAGATTTTGCGTGA+TGG + chr1.2:59505261-59505280 MS.gene40792:CDS 50.0%
ATTGGTCAAGAGCTCCCGCA+GGG - chr1.2:59505817-59505836 None:intergenic 55.0%
TATTGGTCAAGAGCTCCCGC+AGG - chr1.2:59505818-59505837 None:intergenic 55.0%
TCCCAGCATACGCTACCCCT+CGG + chr1.2:59504854-59504873 MS.gene40792:CDS 60.0%
ACCCGAGGGGTAGCGTATGC+TGG - chr1.2:59504859-59504878 None:intergenic 65.0%
CCCAGCATACGCTACCCCTC+GGG + chr1.2:59504855-59504874 MS.gene40792:CDS 65.0%
CCCGAGGGGTAGCGTATGCT+GGG - chr1.2:59504858-59504877 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 59504504 59506488 59504504 ID=MS.gene40792
chr1.2 mRNA 59504504 59506488 59504504 ID=MS.gene40792.t1;Parent=MS.gene40792
chr1.2 exon 59504504 59504584 59504504 ID=MS.gene40792.t1.exon1;Parent=MS.gene40792.t1
chr1.2 CDS 59504504 59504584 59504504 ID=cds.MS.gene40792.t1;Parent=MS.gene40792.t1
chr1.2 exon 59504827 59505039 59504827 ID=MS.gene40792.t1.exon2;Parent=MS.gene40792.t1
chr1.2 CDS 59504827 59505039 59504827 ID=cds.MS.gene40792.t1;Parent=MS.gene40792.t1
chr1.2 exon 59505201 59505374 59505201 ID=MS.gene40792.t1.exon3;Parent=MS.gene40792.t1
chr1.2 CDS 59505201 59505374 59505201 ID=cds.MS.gene40792.t1;Parent=MS.gene40792.t1
chr1.2 exon 59505524 59505630 59505524 ID=MS.gene40792.t1.exon4;Parent=MS.gene40792.t1
chr1.2 CDS 59505524 59505630 59505524 ID=cds.MS.gene40792.t1;Parent=MS.gene40792.t1
chr1.2 exon 59505796 59506052 59505796 ID=MS.gene40792.t1.exon5;Parent=MS.gene40792.t1
chr1.2 CDS 59505796 59506052 59505796 ID=cds.MS.gene40792.t1;Parent=MS.gene40792.t1
chr1.2 exon 59506151 59506488 59506151 ID=MS.gene40792.t1.exon6;Parent=MS.gene40792.t1
chr1.2 CDS 59506151 59506488 59506151 ID=cds.MS.gene40792.t1;Parent=MS.gene40792.t1
Gene Sequence

>MS.gene40792

ATGGCACACATTAACGGGTATGACTGGAGCATGACTCCCTTATTATCCAACAATGATGATGCACAAACTACATATAATATGGTACTATTTAATTTGTTTTTTATATGTAACCTATGTTACTTAGATTTTTTTTTTTCTCATCACTCTTTATCAGTTCATGCTTTTAATTTAATCTCACTAATAATTACGTGCATTAAGGCATTCATTTTCTCCTACTACACACACACGTACCATGCATGTTTTGTATATGGAGGCATTTATTCGCACTTTTATTGATAAAGAATAACAACATTAATTTGGTATTTTATCTCTTCTAATGTCAGGATAATCATCTGAACTTGAGAGAAATGTCCCAGCATACGCTACCCCTCGGGTTAAAGCTCACATTGACTCCTGACATGCTTCCATTCACAGAACAAAACATGAACGATGATGCTACAAAAATTACAACTTCATGCCAACTAGAAATTAAGAAAGTTGAGAAGTTGAAGGCTGTTCATTTTCCAATGTATATGCTCATCATCGGGTTTTTCAAGGTATATATTACTGTACTAACTACTACATACTACTAGTATATAGTATTTGACTTGTATAATAGTCAAATTAATTAAGTGTTCCTAATAAGTCCCATAATATTCGAGGTTTTATTATATTATATAATAAAATATTTGTCTCATATGATATGCTGCGCATGCAGATTGAGGCTAAATATCCTGCGGATTTGGTAGCTAAGTTTTATTATGCTAAACGAAAATTAGTGTGGGAGATTTTGCGTGATGGTTTAAAGGAAAAGATTGAAATACACTGGCAAAACATTTCAGCCATTCGAGCTGTTCTTGAGGATAATTTACCTGGTATTCTTGAAATTGAGGTACTTCTTTCTTTAATGCAGGAATAAATAATCTCTTTACACTGATAATTAAGCTATGCAGACACATTCACATTAAGAAAACTTTATAAATATTTTGAATATTTATCAAATGTATAGATGTTAATTTTCATTGGATTTGTTTTTTACAGCTAGACAAAGTACCATCCTTCTTTCGTGAGATAGAACCAAAGCCTGGAAAGCATACTGTGTGGACGTTATCTCAAGACTTCACTCATGGTCAAGCTTCCAAATACCGGTGTGTATTTCTTTTTAACCACATTATTCCACCTTTTTACTTTTGGATGAAAACTTGCACACAAATAGATTGATTCAATCATATTCAGCTTGATTGTATTTATAGTTTTATAGTACATACAATATATCATTTTGTCATTGATGGCAAATATTTCTTTCTGCTCAGGAGGCACTATCTTCAATTCCCTGCGGGAGCTCTTGACCAATACTACGCAAAGCTCTTGCAATGTGATAATCGATTGTTGGAATTGAGCCAGAGACCATTTCCTAGTTCACATGCCATTTATTTTGATTCACATTTAGATAAGAGGACAACACAACTTAATTTTTCTCATGATTCGGAAACCACCTCGGTTATGGACCAACAAATTCAACAACTTGGCACATTGCCTCGAATTTCTAATTATAACAACCCAACTTCAGGTAGCAAAAATTTCCATTGATTATAGTATTCCATAATAATACATGTGTGCTCATCACAACAACATTAGCACTTCTAACATAAAAAACATATGTTACAGACGAGTCGATCAACAATCAAATGCTTCAAGATCCGATGATGTCTTCCTCTTGGAGTCAAGGCTTTCATTATGACACTAAACTTTCAATGGAGTATGTCCCACATGCAAGTTGCATACAAGCACAACCAAGTGGACCAGATTGGTTAAAATATGAAATGCCTGGTCACATTAATAACATGTTGCTAGGAGGTTACCATATCCCAGAAAATGAATCCAACACAACACATATGAGTGATAGTGCCAGTGTAGTTTGCCCAAATGTTGCTCAATCAATTGATGCGAGTCTTGTTTACCACACCAATACAAGCACAGAGTTTGATTGGTCTATGTTAACTTAA
Protein sequence

>MS.gene40792.t1

MAHINGYDWSMTPLLSNNDDAQTTYNMDNHLNLREMSQHTLPLGLKLTLTPDMLPFTEQNMNDDATKITTSCQLEIKKVEKLKAVHFPMYMLIIGFFKIEAKYPADLVAKFYYAKRKLVWEILRDGLKEKIEIHWQNISAIRAVLEDNLPGILEIELDKVPSFFREIEPKPGKHTVWTLSQDFTHGQASKYRRHYLQFPAGALDQYYAKLLQCDNRLLELSQRPFPSSHAIYFDSHLDKRTTQLNFSHDSETTSVMDQQIQQLGTLPRISNYNNPTSDESINNQMLQDPMMSSSWSQGFHYDTKLSMEYVPHASCIQAQPSGPDWLKYEMPGHINNMLLGGYHIPENESNTTHMSDSASVVCPNVAQSIDASLVYHTNTSTEFDWSMLT