AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40810.t1 MTR_1g083750 97.636 423 10 0 1 423 1 423 0.0 849
MS.gene40810.t1 MTR_7g112430 85.071 422 61 2 1 422 1 420 0.0 716
MS.gene40810.t1 MTR_1g083750 97.281 331 9 0 93 423 1 331 0.0 661
MS.gene40810.t1 MTR_1g110210 73.375 323 84 1 1 323 1 321 4.00e-174 489
MS.gene40810.t1 MTR_1g019760 56.341 410 177 2 14 423 11 418 3.23e-168 479
MS.gene40810.t1 MTR_7g029240 62.442 434 138 13 1 422 1 421 4.10e-166 473
MS.gene40810.t1 MTR_3g101540 55.556 414 175 3 14 422 10 419 4.55e-163 465
MS.gene40810.t1 MTR_3g101540 55.556 414 175 3 14 422 10 419 5.98e-163 465
MS.gene40810.t1 MTR_1g019760 58.960 346 140 2 14 359 11 354 3.63e-149 430
MS.gene40810.t1 MTR_1g014640 31.449 283 155 12 25 298 72 324 2.30e-28 114
MS.gene40810.t1 MTR_1g013400 31.449 283 155 12 25 298 72 324 2.30e-28 114
MS.gene40810.t1 MTR_3g105730 31.452 248 144 9 57 298 32 259 2.90e-27 110
MS.gene40810.t1 MTR_3g105730 30.924 249 144 9 57 298 54 281 4.23e-27 110
MS.gene40810.t1 MTR_1g115570 31.673 281 155 14 25 299 90 339 1.74e-25 106
MS.gene40810.t1 MTR_3g464650 29.779 272 163 11 33 297 64 314 5.14e-25 104
MS.gene40810.t1 MTR_3g464700 31.579 228 136 8 33 260 88 295 1.81e-24 103
MS.gene40810.t1 MTR_5g071550 28.625 269 164 11 36 297 127 374 2.21e-22 98.2
MS.gene40810.t1 MTR_8g463130 30.043 233 139 8 68 295 66 279 4.15e-21 93.2
MS.gene40810.t1 MTR_8g463130 30.043 233 139 8 68 295 38 251 5.05e-21 92.0
MS.gene40810.t1 MTR_2g078760 29.572 257 152 11 46 297 21 253 4.26e-20 89.7
MS.gene40810.t1 MTR_2g078760 29.572 257 152 11 46 297 100 332 4.34e-20 90.9
MS.gene40810.t1 MTR_4g125810 27.365 296 159 10 46 297 220 503 7.72e-20 92.0
MS.gene40810.t1 MTR_3g091060 29.020 255 152 9 46 295 108 338 3.02e-19 89.0
MS.gene40810.t1 MTR_4g094208 27.698 278 168 10 27 295 21 274 5.09e-19 87.0
MS.gene40810.t1 MTR_1g050520 31.301 246 136 7 69 299 419 646 7.23e-19 89.4
MS.gene40810.t1 MTR_5g071550 28.636 220 137 8 36 255 127 326 8.41e-19 87.8
MS.gene40810.t1 MTR_4g123080 30.556 252 139 10 67 299 94 328 1.43e-18 87.0
MS.gene40810.t1 MTR_4g123080 30.556 252 139 10 67 299 112 346 1.43e-18 87.4
MS.gene40810.t1 MTR_3g074610 29.032 279 163 11 27 295 26 279 3.80e-18 84.7
MS.gene40810.t1 MTR_5g024340 26.894 264 153 9 67 314 123 362 4.90e-18 85.5
MS.gene40810.t1 MTR_2g008850 25.818 275 177 9 27 295 25 278 4.95e-18 84.3
MS.gene40810.t1 MTR_2g008850 27.778 234 143 9 68 295 19 232 7.51e-18 82.8
MS.gene40810.t1 MTR_5g063940 29.137 278 164 12 27 295 26 279 1.18e-17 83.2
MS.gene40810.t1 MTR_5g063940 30.472 233 138 9 68 295 19 232 2.09e-17 81.6
MS.gene40810.t1 MTR_5g009370 29.524 210 123 7 66 265 85 279 2.37e-17 83.2
MS.gene40810.t1 MTR_3g491830 24.518 363 189 14 29 344 54 378 1.10e-16 81.6
MS.gene40810.t1 MTR_1g015110 30.712 267 137 10 69 299 291 545 1.24e-16 82.4
MS.gene40810.t1 MTR_3g068200 29.032 217 122 6 62 261 117 318 2.29e-16 80.9
MS.gene40810.t1 MTR_4g094542 29.921 254 150 10 46 295 133 362 2.38e-16 80.5
MS.gene40810.t1 MTR_2g078760 30.332 211 120 9 46 252 100 287 2.75e-16 79.3
MS.gene40810.t1 MTR_2g040500 25.857 321 162 10 40 297 228 535 3.38e-16 80.9
MS.gene40810.t1 MTR_4g116420 29.762 252 132 10 65 295 121 348 5.59e-16 79.7
MS.gene40810.t1 MTR_8g102550 29.442 197 118 6 69 258 153 335 6.90e-16 79.3
MS.gene40810.t1 MTR_2g033000 31.373 255 131 11 64 295 96 329 8.39e-16 79.0
MS.gene40810.t1 MTR_6g081850 28.053 303 165 13 26 295 34 316 8.79e-16 78.2
MS.gene40810.t1 MTR_1g086350 29.104 268 153 12 66 313 14 264 1.00e-15 77.8
MS.gene40810.t1 MTR_3g104710 27.574 272 149 8 62 297 280 539 1.38e-15 79.0
MS.gene40810.t1 MTR_5g042243 85.366 41 6 0 1 41 1 41 3.29e-15 72.0
MS.gene40810.t1 MTR_7g112490 33.898 177 95 9 116 276 183 353 1.05e-14 75.9
MS.gene40810.t1 MTR_7g112490 33.898 177 95 9 116 276 165 335 1.41e-14 75.1
MS.gene40810.t1 MTR_1g028300 31.048 248 138 9 69 297 146 379 1.51e-14 75.1
MS.gene40810.t1 MTR_7g021530 30.403 273 142 14 36 283 48 297 2.85e-14 74.3
MS.gene40810.t1 MTR_5g080680 28.019 207 123 7 69 262 133 326 3.43e-14 74.3
MS.gene40810.t1 MTR_7g021530 30.403 273 142 14 36 283 98 347 7.11e-14 73.2
MS.gene40810.t1 MTR_7g021530 30.403 273 142 14 36 283 139 388 1.19e-13 72.8
MS.gene40810.t1 MTR_3g107880 27.372 274 152 11 67 320 62 308 2.45e-13 70.9
MS.gene40810.t1 MTR_6g087000 27.517 298 167 14 36 297 97 381 2.51e-13 72.4
MS.gene40810.t1 MTR_6g087000 27.517 298 167 14 36 297 97 381 2.55e-13 72.4
MS.gene40810.t1 MTR_3g107880 27.969 261 145 9 67 308 120 356 2.58e-13 71.2
MS.gene40810.t1 MTR_3g107880 27.969 261 145 9 67 308 119 355 2.94e-13 71.2
MS.gene40810.t1 MTR_4g118340 31.126 302 148 19 36 297 59 340 6.69e-13 70.1
MS.gene40810.t1 MTR_8g017240 29.949 197 113 9 100 283 136 320 6.96e-13 70.1
MS.gene40810.t1 MTR_2g020970 26.829 287 166 11 43 297 67 341 2.07e-12 68.6
MS.gene40810.t1 MTR_4g007440 34.043 141 66 5 128 257 156 280 4.78e-12 67.4
MS.gene40810.t1 MTR_2g020970 26.829 287 166 11 43 297 67 341 6.39e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40810.t1 AT1G09160 75.355 422 102 1 1 422 1 420 0.0 646
MS.gene40810.t1 AT1G09160 75.355 422 102 1 1 422 1 420 0.0 646
MS.gene40810.t1 AT1G68410 68.675 415 126 2 11 422 16 429 0.0 580
MS.gene40810.t1 AT1G68410 68.675 415 126 2 11 422 16 429 0.0 580
MS.gene40810.t1 AT1G68410 68.675 415 126 2 11 422 16 429 0.0 580
MS.gene40810.t1 AT1G68410 68.675 415 126 2 11 422 16 429 0.0 580
MS.gene40810.t1 AT1G47380 56.341 410 178 1 14 423 10 418 8.63e-170 483
MS.gene40810.t1 AT5G10740 30.921 304 168 13 6 298 8 280 4.13e-27 111
MS.gene40810.t1 AT5G10740 30.921 304 168 13 6 298 8 280 4.13e-27 111
MS.gene40810.t1 AT2G34740 33.054 239 136 8 65 298 116 335 7.68e-27 110
MS.gene40810.t1 AT1G07160 30.686 277 157 11 33 297 123 376 9.13e-26 108
MS.gene40810.t1 AT1G67820 32.787 244 139 10 34 270 78 303 1.16e-25 108
MS.gene40810.t1 AT1G67820 32.787 244 139 10 34 270 114 339 1.47e-25 108
MS.gene40810.t1 AT5G24940 30.877 285 154 13 25 298 28 280 1.62e-25 108
MS.gene40810.t1 AT4G31750 29.180 305 163 13 25 306 28 302 2.77e-25 105
MS.gene40810.t1 AT4G31750 29.180 305 163 13 25 306 28 302 2.77e-25 105
MS.gene40810.t1 AT4G31750 30.108 279 158 11 25 295 28 277 3.17e-25 105
MS.gene40810.t1 AT1G43900 31.970 269 148 14 36 295 124 366 3.87e-24 103
MS.gene40810.t1 AT1G22280 30.901 233 143 7 68 295 65 284 5.02e-24 101
MS.gene40810.t1 AT2G40180 28.269 283 183 8 21 297 117 385 8.60e-24 102
MS.gene40810.t1 AT1G34750 29.749 279 161 11 27 295 26 279 1.61e-23 100
MS.gene40810.t1 AT1G34750 29.749 279 161 11 27 295 26 279 1.61e-23 100
MS.gene40810.t1 AT1G34750 29.749 279 161 11 27 295 26 279 1.61e-23 100
MS.gene40810.t1 AT1G78200 30.357 280 161 11 27 295 24 280 1.86e-23 99.8
MS.gene40810.t1 AT1G78200 30.357 280 161 11 27 295 24 280 1.86e-23 99.8
MS.gene40810.t1 AT1G78200 30.357 280 161 11 27 295 24 280 1.86e-23 99.8
MS.gene40810.t1 AT1G78200 31.128 257 147 10 46 295 2 235 2.05e-23 98.6
MS.gene40810.t1 AT1G78200 31.128 257 147 10 46 295 2 235 2.05e-23 98.6
MS.gene40810.t1 AT4G28400 29.258 229 146 6 68 295 45 258 7.66e-23 97.4
MS.gene40810.t1 AT2G30020 28.782 271 163 11 36 297 143 392 9.53e-23 99.8
MS.gene40810.t1 AT5G53140 29.412 255 151 10 46 295 115 345 1.26e-22 99.8
MS.gene40810.t1 AT5G53140 29.412 255 151 10 46 295 115 345 1.26e-22 99.8
MS.gene40810.t1 AT4G28400 29.258 229 146 6 68 295 67 280 1.57e-22 97.1
MS.gene40810.t1 AT1G22280 30.901 233 137 8 68 295 65 278 3.71e-22 95.9
MS.gene40810.t1 AT2G20630 29.104 268 158 12 33 295 36 276 5.57e-22 95.5
MS.gene40810.t1 AT4G26080 27.737 274 149 7 61 299 165 424 1.59e-21 96.7
MS.gene40810.t1 AT2G20630 28.839 267 158 12 33 294 36 275 2.28e-21 94.0
MS.gene40810.t1 AT3G51470 28.475 295 169 11 36 314 32 300 5.58e-21 93.6
MS.gene40810.t1 AT3G51470 28.475 295 169 11 36 314 76 344 6.91e-21 94.0
MS.gene40810.t1 AT5G57050 28.464 267 145 9 65 297 117 371 4.38e-20 91.7
MS.gene40810.t1 AT5G57050 28.464 267 145 9 65 297 157 411 5.36e-20 92.0
MS.gene40810.t1 AT2G40860 29.286 280 157 9 36 299 396 650 1.47e-19 91.7
MS.gene40810.t1 AT2G25620 30.451 266 136 10 67 308 127 367 1.94e-19 90.1
MS.gene40810.t1 AT2G25620 30.451 266 136 10 67 308 127 367 1.94e-19 90.1
MS.gene40810.t1 AT2G40860 29.286 280 157 9 36 299 298 552 2.27e-19 90.9
MS.gene40810.t1 AT2G34740 29.665 209 127 5 65 270 112 303 2.84e-19 88.2
MS.gene40810.t1 AT2G34740 29.665 209 127 5 65 270 130 321 3.46e-19 88.6
MS.gene40810.t1 AT3G62260 29.771 262 148 12 67 307 26 272 4.64e-18 84.7
MS.gene40810.t1 AT2G40860 28.409 264 148 8 36 282 396 635 1.20e-17 85.9
MS.gene40810.t1 AT3G62260 29.771 262 148 12 67 307 115 361 1.62e-17 84.3
MS.gene40810.t1 AT3G62260 29.771 262 148 12 67 307 116 362 1.63e-17 84.3
MS.gene40810.t1 AT1G48040 32.692 260 129 12 63 295 107 347 2.06e-17 84.0
MS.gene40810.t1 AT3G15260 29.185 233 141 8 68 295 73 286 5.51e-17 81.3
MS.gene40810.t1 AT3G15260 29.185 233 141 8 68 295 73 286 5.51e-17 81.3
MS.gene40810.t1 AT1G34750 28.085 235 136 9 27 252 26 236 1.28e-16 79.3
MS.gene40810.t1 AT5G59220 28.287 251 150 10 31 265 107 343 2.98e-15 77.8
MS.gene40810.t1 AT4G28400 27.568 185 120 4 68 252 67 237 4.58e-15 75.1
MS.gene40810.t1 AT1G18030 29.020 255 135 10 69 295 110 346 4.98e-15 76.3
MS.gene40810.t1 AT1G07430 28.054 221 126 7 62 265 151 355 5.05e-14 73.9
MS.gene40810.t1 AT4G27800 24.848 330 173 12 40 322 67 368 9.96e-14 72.8
MS.gene40810.t1 AT3G11410 25.446 224 126 7 62 260 131 338 2.32e-12 68.6
MS.gene40810.t1 AT2G40860 29.114 237 127 8 36 255 396 608 3.03e-12 68.9
MS.gene40810.t1 AT1G16220 23.864 352 195 13 5 301 45 378 3.81e-12 68.2
MS.gene40810.t1 AT4G27800 26.119 268 134 9 40 265 67 312 3.82e-12 67.4
MS.gene40810.t1 AT3G17250 28.063 253 140 13 67 295 157 391 4.37e-12 67.8
MS.gene40810.t1 AT4G27800 26.119 268 134 9 40 265 67 312 4.42e-12 67.4
MS.gene40810.t1 AT5G27930 33.544 158 88 7 105 251 150 301 8.75e-12 66.2
MS.gene40810.t1 AT1G17550 27.434 226 120 8 69 265 238 448 1.21e-11 67.0
MS.gene40810.t1 AT1G17550 27.434 226 120 8 69 265 238 448 1.21e-11 67.0
MS.gene40810.t1 AT1G79630 29.798 198 121 6 131 314 151 344 1.40e-11 66.2
MS.gene40810.t1 AT1G79630 29.798 198 121 6 131 314 151 344 1.40e-11 66.2
MS.gene40810.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.66e-11 65.9
MS.gene40810.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.66e-11 65.9
MS.gene40810.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.66e-11 65.9
MS.gene40810.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.66e-11 65.9
MS.gene40810.t1 AT1G79630 29.500 200 123 6 131 316 217 412 1.71e-11 66.2
MS.gene40810.t1 AT1G79630 29.500 200 123 6 131 316 221 416 2.59e-11 65.9
MS.gene40810.t1 AT4G32950 30.114 176 110 5 131 297 138 309 4.41e-11 64.3
MS.gene40810.t1 AT5G51760 25.301 249 152 6 40 265 86 323 4.64e-11 64.7
MS.gene40810.t1 AT1G18030 30.288 208 104 9 69 253 110 299 4.68e-11 63.9
MS.gene40810.t1 AT5G36250 26.222 225 136 9 100 300 171 389 4.75e-11 64.7
MS.gene40810.t1 AT2G29380 27.928 222 132 8 59 265 103 311 5.01e-11 64.3
MS.gene40810.t1 AT5G51760 25.301 249 152 6 40 265 116 353 5.11e-11 64.7
MS.gene40810.t1 AT1G72770 25.090 279 143 11 69 297 239 501 5.57e-11 64.7
MS.gene40810.t1 AT1G72770 25.090 279 143 11 69 297 239 501 5.57e-11 64.7
MS.gene40810.t1 AT1G72770 25.090 279 143 11 69 297 239 501 5.57e-11 64.7
MS.gene40810.t1 AT2G25070 31.206 141 70 5 128 257 156 280 9.45e-11 63.5
MS.gene40810.t1 AT2G25070 31.206 141 70 5 128 257 156 280 9.45e-11 63.5

Find 119 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCTTCTGATGGAATT+TGG 0.123861 1.2:+59702375 MS.gene40810:CDS
AGCACATTATGTTTCTTTCT+TGG 0.197447 1.2:-59702669 None:intergenic
GTTCCTTCCAATACAAATTC+TGG 0.255485 1.2:+59703300 MS.gene40810:CDS
TGTTTCTTTCTTGGAGTTGC+TGG 0.268275 1.2:-59702660 None:intergenic
GTGCTTAGTTCACTTCTCTT+TGG 0.288508 1.2:+59702687 MS.gene40810:CDS
TCACCTGCAGGGGAAACTTC+TGG 0.319705 1.2:+59701829 MS.gene40810:intron
TATAGCTTCTGATGGAATTT+GGG 0.324404 1.2:+59702376 MS.gene40810:CDS
GCTACGTTTGTGATTATTGA+TGG 0.331297 1.2:+59701859 MS.gene40810:CDS
CCGTTACAGTTGCATCTGTT+GGG 0.351128 1.2:+59701887 MS.gene40810:CDS
ACAGATTGCCATAGAGTTCC+TGG 0.368715 1.2:+59701209 MS.gene40810:CDS
ACTTGCTTAACATGTGGTAT+TGG 0.372029 1.2:-59702219 None:intergenic
TGCTGCCAAGCTGGTGGTTA+AGG 0.391611 1.2:+59702454 MS.gene40810:CDS
AAGACGCCATGGAAGGAAAA+AGG 0.416517 1.2:+59703457 MS.gene40810:CDS
CAGATCCTTGACGGGCATAA+TGG 0.417208 1.2:+59701581 MS.gene40810:intron
GGGCCTCTTCGCTGTTGGCC+TGG 0.420476 1.2:+59702141 MS.gene40810:CDS
AACCTGAACAGGAAGCTCTA+AGG 0.420809 1.2:+59702562 MS.gene40810:intron
GTAGGAAGACTCAACGTATT+CGG 0.426631 1.2:+59702024 MS.gene40810:CDS
GTTTCCTAGCTTTCAAATGC+TGG 0.427993 1.2:+59702341 MS.gene40810:intron
CTTGATTGGCAGATCCTTGA+CGG 0.435403 1.2:+59701572 MS.gene40810:intron
TGGAAGAAAATGTAGAAGAG+AGG 0.437691 1.2:+59701974 MS.gene40810:CDS
GTGAATACCAGAATTTGTAT+TGG 0.439513 1.2:-59703307 None:intergenic
CTTAAAATGCAGGCTAGGTA+AGG 0.443855 1.2:+59703275 MS.gene40810:intron
ATGGCTTCAAGCACTGCCTC+GGG 0.448779 1.2:+59701685 MS.gene40810:CDS
ACTAATAAGCTTTCTGCAGT+TGG 0.455037 1.2:+59702741 MS.gene40810:CDS
TCGTAGCTCACGGCCGATCA+AGG 0.456909 1.2:-59701105 None:intergenic
GGATACTTTGTCTTCTGATA+CGG 0.461894 1.2:+59702397 MS.gene40810:CDS
AATGGCTTCAAGCACTGCCT+CGG 0.462446 1.2:+59701684 MS.gene40810:CDS
ATCGGCCGTGAGCTACGAAA+TGG 0.463670 1.2:+59701110 MS.gene40810:CDS
GTTCCGTTGGCAACCTTGAT+CGG 0.465033 1.2:+59701092 MS.gene40810:CDS
CCATACCGCAAGGTGTAAGC+AGG 0.465666 1.2:+59701657 MS.gene40810:CDS
AAGAATCGCCAGGAACTCTA+TGG 0.471757 1.2:-59701217 None:intergenic
GCCTGTCCATACTTCACAAA+AGG 0.476504 1.2:-59701146 None:intergenic
TTTCTTGGAGTTGCTGGCAT+CGG 0.478380 1.2:-59702654 None:intergenic
GAAGTATGGACAGGCTGGTT+TGG 0.479502 1.2:+59701154 MS.gene40810:CDS
GTGGAGGAGTTATTTGAAGA+GGG 0.481037 1.2:+59702768 MS.gene40810:CDS
CTGGGTATCTAATATGCATC+GGG 0.481436 1.2:-59701914 None:intergenic
ACCGTTACAGTTGCATCTGT+TGG 0.483048 1.2:+59701886 MS.gene40810:CDS
TGCAGAACTTGCTGCCAAGC+TGG 0.486136 1.2:+59702445 MS.gene40810:CDS
CCTGCTTACACCTTGCGGTA+TGG 0.486759 1.2:-59701657 None:intergenic
TCTTCCTACTTCACCACCAC+TGG 0.489968 1.2:-59702010 None:intergenic
AATAATATCTACAACAAGGC+AGG 0.494608 1.2:-59702610 None:intergenic
GCTTTCTGCAGTTGGTATTG+TGG 0.496447 1.2:+59702749 MS.gene40810:CDS
TGACAGTTTGTGCAGAGGAA+TGG 0.499633 1.2:-59703426 None:intergenic
CCTTCCCATGGCTTAGATAC+CGG 0.499863 1.2:-59703402 None:intergenic
TGCCTAGCAGATCAACCATC+TGG 0.501426 1.2:+59703342 MS.gene40810:CDS
TTTGTGAAGTATGGACAGGC+TGG 0.503204 1.2:+59701149 MS.gene40810:CDS
AAAATGTAGAAGAGAGGGAG+CGG 0.505425 1.2:+59701980 MS.gene40810:CDS
CGTTTGTGATTATTGATGGA+TGG 0.510062 1.2:+59701863 MS.gene40810:CDS
AGAGAGAAACAACACCTCCC+TGG 0.510635 1.2:-59701933 None:intergenic
TTCTGCAGTTGGTATTGTGG+AGG 0.515246 1.2:+59702752 MS.gene40810:CDS
AGCTTGGCAGCAAGTTCTGC+AGG 0.516289 1.2:-59702443 None:intergenic
AGGTAGGGCCTCTTCGCTGT+TGG 0.519693 1.2:+59702136 MS.gene40810:intron
ACAGCCAGTGGTGGTGAAGT+AGG 0.520024 1.2:+59702006 MS.gene40810:CDS
CGTTACAGTTGCATCTGTTG+GGG 0.531574 1.2:+59701888 MS.gene40810:CDS
TTGATTGGCAGATCCTTGAC+GGG 0.533037 1.2:+59701573 MS.gene40810:intron
GAAGCAACCACTTGTTCCGT+TGG 0.533409 1.2:+59701079 MS.gene40810:CDS
TGAGTAAGACTGAATTATCA+AGG 0.534598 1.2:+59701054 MS.gene40810:CDS
ATAAAATGATCGGTGTTCAC+TGG 0.535304 1.2:-59703375 None:intergenic
CCTCTTCGCTGTTGGCCTGG+TGG 0.536837 1.2:+59702144 MS.gene40810:CDS
AAATGTAGAAGAGAGGGAGC+GGG 0.539423 1.2:+59701981 MS.gene40810:CDS
TGTGGAGGAGTTATTTGAAG+AGG 0.540145 1.2:+59702767 MS.gene40810:CDS
AATGACGTTGAAGAATCGCC+AGG 0.544088 1.2:-59701227 None:intergenic
CCTGGGTATCTAATATGCAT+CGG 0.544206 1.2:-59701915 None:intergenic
ATACCAGAATTTGTATTGGA+AGG 0.544653 1.2:-59703303 None:intergenic
TCCTCCCTGCTTACACCTTG+CGG 0.545928 1.2:-59701662 None:intergenic
TCACTCCGGTATCTAAGCCA+TGG 0.550001 1.2:+59703397 MS.gene40810:CDS
AGACTAATTATAGCTTCTGA+TGG 0.551958 1.2:+59702368 MS.gene40810:CDS
TCTAAGGTCAAGAGGGCTGA+AGG 0.552829 1.2:+59702578 MS.gene40810:CDS
TGTCACCAATCGATCTAGAA+AGG 0.554127 1.2:-59702173 None:intergenic
GAGAGAAACAACACCTCCCT+GGG 0.554466 1.2:-59701932 None:intergenic
AGGGAGCGGGTTACAGCCAG+TGG 0.559334 1.2:+59701994 MS.gene40810:CDS
GGAAGAAAATGTAGAAGAGA+GGG 0.560448 1.2:+59701975 MS.gene40810:CDS
CACTCCGGTATCTAAGCCAT+GGG 0.564768 1.2:+59703398 MS.gene40810:CDS
AAGGTGTAAGCAGGGAGGAA+TGG 0.566433 1.2:+59701666 MS.gene40810:CDS
CTAGAAAGGCACAATCCACC+AGG 0.566834 1.2:-59702159 None:intergenic
CCGATGCATATTAGATACCC+AGG 0.567386 1.2:+59701915 MS.gene40810:CDS
TCTTCTGACAGTTTGTGCAG+AGG 0.570739 1.2:-59703431 None:intergenic
TTGTGCCTTTCTAGATCGAT+TGG 0.574242 1.2:+59702168 MS.gene40810:CDS
CACCAGATGGTTGATCTGCT+AGG 0.577655 1.2:-59703344 None:intergenic
AGGTACACCACGACATGACT+TGG 0.578313 1.2:-59702423 None:intergenic
CAGGAAGCTCTAAGGTCAAG+AGG 0.580501 1.2:+59702570 MS.gene40810:intron
GTTGCTGGCATCGGCAACAC+AGG 0.580752 1.2:-59702645 None:intergenic
ACCTTCACTTGCTTAACATG+TGG 0.582513 1.2:-59702225 None:intergenic
CAGAGGAATGGACCTTCCCA+TGG 0.585428 1.2:-59703414 None:intergenic
TCTCAAAACTCGACAAACAA+AGG 0.587947 1.2:+59702717 MS.gene40810:CDS
CTTGACAGTTGATCACAGAC+TGG 0.593422 1.2:+59701954 MS.gene40810:CDS
AAGAAGAAAGACGCCATGGA+AGG 0.594109 1.2:+59703450 MS.gene40810:CDS
ATCGATTGGTGACACCGATG+TGG 0.601496 1.2:+59702182 MS.gene40810:CDS
GCAGATCAACCATCTGGTGA+TGG 0.602774 1.2:+59703348 MS.gene40810:CDS
TACCGGAGTGATAAAATGAT+CGG 0.613081 1.2:-59703385 None:intergenic
CATCACCTTAACCACCAGCT+TGG 0.613564 1.2:-59702459 None:intergenic
CCACCAGGCCAACAGCGAAG+AGG 0.616089 1.2:-59702144 None:intergenic
TCGATTGGTGACACCGATGT+GGG 0.617709 1.2:+59702183 MS.gene40810:CDS
AAGGTTGCCAACGGAACAAG+TGG 0.618923 1.2:-59701086 None:intergenic
ATATACCATTATGCCCGTCA+AGG 0.625718 1.2:-59701586 None:intergenic
GAGCGGGTTACAGCCAGTGG+TGG 0.626341 1.2:+59701997 MS.gene40810:CDS
AGGAAGCTCTAAGGTCAAGA+GGG 0.627250 1.2:+59702571 MS.gene40810:intron
ACCACATGTTAAGCAAGTGA+AGG 0.627901 1.2:+59702224 MS.gene40810:CDS
GTCATGAGTGCCATACCGCA+AGG 0.630194 1.2:+59701647 MS.gene40810:CDS
TCAGAAGAAGAAAGACGCCA+TGG 0.630309 1.2:+59703446 MS.gene40810:CDS
CCCAACAGATGCAACTGTAA+CGG 0.630410 1.2:-59701887 None:intergenic
CGGCCGATCAAGGTTGCCAA+CGG 0.631386 1.2:-59701095 None:intergenic
TCCTAGCTTTCAAATGCTGG+CGG 0.631854 1.2:+59702344 MS.gene40810:intron
CCGGTATCTAAGCCATGGGA+AGG 0.632107 1.2:+59703402 MS.gene40810:CDS
GGCAACACAGGATAGTCTGA+AGG 0.635849 1.2:-59702633 None:intergenic
AAAGCGACAACTAGAGCCCG+AGG 0.640273 1.2:-59701701 None:intergenic
CAACGTATTCGGAGGCAATG+AGG 0.642352 1.2:+59702035 MS.gene40810:CDS
CGATGCATATTAGATACCCA+GGG 0.643134 1.2:+59701916 MS.gene40810:CDS
ACTGGTAAACCATCACCAGA+TGG 0.656343 1.2:-59703357 None:intergenic
CATACCGCAAGGTGTAAGCA+GGG 0.674683 1.2:+59701658 MS.gene40810:CDS
GGAAGACTCAACGTATTCGG+AGG 0.678380 1.2:+59702027 MS.gene40810:CDS
AACGATATACTCTCCCACAT+CGG 0.681964 1.2:-59702196 None:intergenic
AGAACTTGCTGCCAAGCTGG+TGG 0.683075 1.2:+59702448 MS.gene40810:CDS
ACGGCTGCCAAGTCATGTCG+TGG 0.691102 1.2:+59702416 MS.gene40810:CDS
AAGGAATAATATCTACAACA+AGG 0.708500 1.2:-59702614 None:intergenic
ACCGCAAGGTGTAAGCAGGG+AGG 0.718559 1.2:+59701661 MS.gene40810:CDS
GTTCTGCAATGCTTACAGAG+AGG 0.751165 1.2:+59702790 MS.gene40810:CDS
TGCATATTAGATACCCAGGG+AGG 0.753250 1.2:+59701919 MS.gene40810:CDS
CTGCTAGGCAAACTGCACAG+CGG 0.759343 1.2:-59703329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTTACTTTTTACAT+CGG - chr1.2:59703179-59703198 None:intergenic 15.0%
!!! TTGAAAATGCATTTTATAAA+TGG + chr1.2:59702994-59703013 MS.gene40810:intron 15.0%
!! AAGAACTACTAAACTTTAAA+AGG - chr1.2:59702858-59702877 None:intergenic 20.0%
!! ATAAGATCTTATGAATGAAT+TGG + chr1.2:59701387-59701406 MS.gene40810:intron 20.0%
!! TAAGGAAGAAATTATATGAA+AGG - chr1.2:59702086-59702105 None:intergenic 20.0%
!!! CATTTGATTATGAATCTTTT+TGG - chr1.2:59703121-59703140 None:intergenic 20.0%
!!! TTTTTGTTTTCTTAAAATGC+AGG + chr1.2:59703265-59703284 MS.gene40810:intron 20.0%
! AAGGAATAATATCTACAACA+AGG - chr1.2:59702617-59702636 None:intergenic 25.0%
! ATCAATAAGGAATTCTTGAT+TGG + chr1.2:59701558-59701577 MS.gene40810:intron 25.0%
! ATTGATATCATAACCATTGT+GGG - chr1.2:59701544-59701563 None:intergenic 25.0%
! CAATGGTTATGATATCAATA+AGG + chr1.2:59701545-59701564 MS.gene40810:intron 25.0%
! GATTGGAACAAAAATGTTTA+GGG + chr1.2:59702898-59702917 MS.gene40810:intron 25.0%
! TATTGATATCATAACCATTG+TGG - chr1.2:59701545-59701564 None:intergenic 25.0%
! TGATTGGAACAAAAATGTTT+AGG + chr1.2:59702897-59702916 MS.gene40810:intron 25.0%
! TTCCTTAATATGTTTAGGTA+GGG + chr1.2:59702121-59702140 MS.gene40810:intron 25.0%
!! AAAATTTAATTTCACCTGCA+GGG + chr1.2:59701818-59701837 MS.gene40810:intron 25.0%
!! AGTTTTCTTTGTATCCTTAT+TGG + chr1.2:59701766-59701785 MS.gene40810:intron 25.0%
!! TAAAATTTAATTTCACCTGC+AGG + chr1.2:59701817-59701836 MS.gene40810:intron 25.0%
!! TTTGGTTCCTTAATATGTTT+AGG + chr1.2:59702116-59702135 MS.gene40810:intron 25.0%
AAAGGGAATGTATCTTTCTT+AGG + chr1.2:59701434-59701453 MS.gene40810:intron 30.0%
AATAATATCTACAACAAGGC+AGG - chr1.2:59702613-59702632 None:intergenic 30.0%
AGACTAATTATAGCTTCTGA+TGG + chr1.2:59702368-59702387 MS.gene40810:CDS 30.0%
AGCACATTATGTTTCTTTCT+TGG - chr1.2:59702672-59702691 None:intergenic 30.0%
AGTAAACACCTTCACATAAA+AGG - chr1.2:59702287-59702306 None:intergenic 30.0%
ATACCAGAATTTGTATTGGA+AGG - chr1.2:59703306-59703325 None:intergenic 30.0%
GAACCAAAACAAGTTAGATA+AGG - chr1.2:59702104-59702123 None:intergenic 30.0%
GAATTCAAGTCTCATTATGT+TGG + chr1.2:59702513-59702532 MS.gene40810:intron 30.0%
GACATGGAATTTCAGAAAAA+AGG + chr1.2:59701734-59701753 MS.gene40810:CDS 30.0%
GTAAACACCTTCACATAAAA+GGG - chr1.2:59702286-59702305 None:intergenic 30.0%
GTGAATACCAGAATTTGTAT+TGG - chr1.2:59703310-59703329 None:intergenic 30.0%
GTTCCTTAATATGTTTAGGT+AGG + chr1.2:59702120-59702139 MS.gene40810:intron 30.0%
TAAGAAAGATACATTCCCTT+TGG - chr1.2:59701435-59701454 None:intergenic 30.0%
TATAGCTTCTGATGGAATTT+GGG + chr1.2:59702376-59702395 MS.gene40810:CDS 30.0%
TGAGTAAGACTGAATTATCA+AGG + chr1.2:59701054-59701073 MS.gene40810:CDS 30.0%
TTAGTGAAATGTTTGATGAG+AGG + chr1.2:59701329-59701348 MS.gene40810:intron 30.0%
TTATAGCTTCTGATGGAATT+TGG + chr1.2:59702375-59702394 MS.gene40810:CDS 30.0%
! AAATTTAATTTCACCTGCAG+GGG + chr1.2:59701819-59701838 MS.gene40810:intron 30.0%
!! AACTAGAGAAAGTGCATTTT+CGG - chr1.2:59703073-59703092 None:intergenic 30.0%
!! TTTGATGAGAGGTATTTGAT+TGG + chr1.2:59701340-59701359 MS.gene40810:intron 30.0%
!!! ATGTCCTTATTTTCCCATTT+TGG + chr1.2:59703218-59703237 MS.gene40810:intron 30.0%
!!! CTTCCTTATCTAACTTGTTT+TGG + chr1.2:59702098-59702117 MS.gene40810:intron 30.0%
!!! TCTATTGTTTTAACCTGAAC+AGG + chr1.2:59702551-59702570 MS.gene40810:intron 30.0%
!!! TGTCCTTATTTTCCCATTTT+GGG + chr1.2:59703219-59703238 MS.gene40810:intron 30.0%
AAAGCTAGGAAACAAATCAG+GGG - chr1.2:59702334-59702353 None:intergenic 35.0%
ACACATGAATACACCCAAAA+TGG - chr1.2:59703235-59703254 None:intergenic 35.0%
ACACCCAAAATGGGAAAATA+AGG - chr1.2:59703225-59703244 None:intergenic 35.0%
ACTAATAAGCTTTCTGCAGT+TGG + chr1.2:59702741-59702760 MS.gene40810:CDS 35.0%
ACTTGCTTAACATGTGGTAT+TGG - chr1.2:59702222-59702241 None:intergenic 35.0%
CACATGAATACACCCAAAAT+GGG - chr1.2:59703234-59703253 None:intergenic 35.0%
CGTTTGTGATTATTGATGGA+TGG + chr1.2:59701863-59701882 MS.gene40810:CDS 35.0%
GAAAGCTAGGAAACAAATCA+GGG - chr1.2:59702335-59702354 None:intergenic 35.0%
GCTACGTTTGTGATTATTGA+TGG + chr1.2:59701859-59701878 MS.gene40810:CDS 35.0%
GGAAGAAAATGTAGAAGAGA+GGG + chr1.2:59701975-59701994 MS.gene40810:CDS 35.0%
GGATACTTTGTCTTCTGATA+CGG + chr1.2:59702397-59702416 MS.gene40810:CDS 35.0%
GTTCCTTCCAATACAAATTC+TGG + chr1.2:59703300-59703319 MS.gene40810:CDS 35.0%
TACCGGAGTGATAAAATGAT+CGG - chr1.2:59703388-59703407 None:intergenic 35.0%
TCTCAAAACTCGACAAACAA+AGG + chr1.2:59702717-59702736 MS.gene40810:CDS 35.0%
TGAAAGCTAGGAAACAAATC+AGG - chr1.2:59702336-59702355 None:intergenic 35.0%
TGAGCTACGAAATGGAAAAA+CGG + chr1.2:59701118-59701137 MS.gene40810:CDS 35.0%
TGGAAGAAAATGTAGAAGAG+AGG + chr1.2:59701974-59701993 MS.gene40810:CDS 35.0%
! ACATTTTCTCAGTGATCAAG+TGG + chr1.2:59701504-59701523 MS.gene40810:intron 35.0%
! ATAAAATGATCGGTGTTCAC+TGG - chr1.2:59703378-59703397 None:intergenic 35.0%
! GTTAAGGTGATGGTTATTTG+TGG + chr1.2:59702470-59702489 MS.gene40810:intron 35.0%
! GTTTTCTTAAAATGCAGGCT+AGG + chr1.2:59703270-59703289 MS.gene40810:intron 35.0%
! TGTTTAGGGTCTGTTTACTT+CGG + chr1.2:59702912-59702931 MS.gene40810:intron 35.0%
! TTCCAATCACTTGTTGATGA+TGG - chr1.2:59702886-59702905 None:intergenic 35.0%
! TTTTTCCATTTCGTAGCTCA+CGG - chr1.2:59701118-59701137 None:intergenic 35.0%
!! AACGTCATTTTCTGTTTTCG+CGG + chr1.2:59701241-59701260 MS.gene40810:CDS 35.0%
!! TTCTAAAGTTCAATGCTCAC+TGG + chr1.2:59702306-59702325 MS.gene40810:intron 35.0%
!!! GGCAGTGTTCTTATTTTTTG+AGG + chr1.2:59702491-59702510 MS.gene40810:intron 35.0%
!!! GTGAGTTGGTTTCATTTTCA+TGG + chr1.2:59702246-59702265 MS.gene40810:intron 35.0%
AAAATGTAGAAGAGAGGGAG+CGG + chr1.2:59701980-59701999 MS.gene40810:CDS 40.0%
AACGATATACTCTCCCACAT+CGG - chr1.2:59702199-59702218 None:intergenic 40.0%
ACCACATGTTAAGCAAGTGA+AGG + chr1.2:59702224-59702243 MS.gene40810:CDS 40.0%
ACCTTCACTTGCTTAACATG+TGG - chr1.2:59702228-59702247 None:intergenic 40.0%
ATATACCATTATGCCCGTCA+AGG - chr1.2:59701589-59701608 None:intergenic 40.0%
CCTGGGTATCTAATATGCAT+CGG - chr1.2:59701918-59701937 None:intergenic 40.0%
CGATGCATATTAGATACCCA+GGG + chr1.2:59701916-59701935 MS.gene40810:CDS 40.0%
CTGGGTATCTAATATGCATC+GGG - chr1.2:59701917-59701936 None:intergenic 40.0%
CTGTCATTGAGAGAACATGA+AGG - chr1.2:59703098-59703117 None:intergenic 40.0%
CTTAAAATGCAGGCTAGGTA+AGG + chr1.2:59703275-59703294 MS.gene40810:intron 40.0%
GAACAAGTACAGCTCCAATA+AGG - chr1.2:59701783-59701802 None:intergenic 40.0%
GCGTCAATTTATTCCCACAA+TGG + chr1.2:59701528-59701547 MS.gene40810:intron 40.0%
GGCCCTACCTAAACATATTA+AGG - chr1.2:59702126-59702145 None:intergenic 40.0%
GTAGGAAGACTCAACGTATT+CGG + chr1.2:59702024-59702043 MS.gene40810:CDS 40.0%
GTGCTTAGTTCACTTCTCTT+TGG + chr1.2:59702687-59702706 MS.gene40810:CDS 40.0%
GTGGAGGAGTTATTTGAAGA+GGG + chr1.2:59702768-59702787 MS.gene40810:CDS 40.0%
TGCCATCATCAACAAGTGAT+TGG + chr1.2:59702881-59702900 MS.gene40810:intron 40.0%
TGTCACCAATCGATCTAGAA+AGG - chr1.2:59702176-59702195 None:intergenic 40.0%
TGTGGAGGAGTTATTTGAAG+AGG + chr1.2:59702767-59702786 MS.gene40810:CDS 40.0%
TGTTTCTTTCTTGGAGTTGC+TGG - chr1.2:59702663-59702682 None:intergenic 40.0%
TTAAGCAAGTGAAGGTGAGT+TGG + chr1.2:59702232-59702251 MS.gene40810:intron 40.0%
TTCCTTCGCAAAAATAGCAG+CGG - chr1.2:59701612-59701631 None:intergenic 40.0%
TTGTGCCTTTCTAGATCGAT+TGG + chr1.2:59702168-59702187 MS.gene40810:CDS 40.0%
! CACCGATCATTTTATCACTC+CGG + chr1.2:59703383-59703402 MS.gene40810:CDS 40.0%
! CGCTTTTGTGAAAACTGACA+TGG + chr1.2:59701718-59701737 MS.gene40810:CDS 40.0%
! CTAGTGACCCTTTTATGTGA+AGG + chr1.2:59702276-59702295 MS.gene40810:intron 40.0%
! GAGAAGCCTTTTGTGAAGTA+TGG + chr1.2:59701140-59701159 MS.gene40810:CDS 40.0%
! GTTTAGGGTCTGTTTACTTC+GGG + chr1.2:59702913-59702932 MS.gene40810:intron 40.0%
! GTTTCCTAGCTTTCAAATGC+TGG + chr1.2:59702341-59702360 MS.gene40810:intron 40.0%
! TCATTTTCTGTTTTCGCGGT+AGG + chr1.2:59701245-59701264 MS.gene40810:intron 40.0%
!!! TTACTTTTTACATCGGCAGC+TGG - chr1.2:59703172-59703191 None:intergenic 40.0%
AAATGTAGAAGAGAGGGAGC+GGG + chr1.2:59701981-59702000 MS.gene40810:CDS 45.0%
AACCTGAACAGGAAGCTCTA+AGG + chr1.2:59702562-59702581 MS.gene40810:intron 45.0%
AAGAAGAAAGACGCCATGGA+AGG + chr1.2:59703450-59703469 MS.gene40810:CDS 45.0%
AAGAATCGCCAGGAACTCTA+TGG - chr1.2:59701220-59701239 None:intergenic 45.0%
AAGACGCCATGGAAGGAAAA+AGG + chr1.2:59703457-59703476 MS.gene40810:CDS 45.0%
AATGACGTTGAAGAATCGCC+AGG - chr1.2:59701230-59701249 None:intergenic 45.0%
ACAGATTGCCATAGAGTTCC+TGG + chr1.2:59701209-59701228 MS.gene40810:CDS 45.0%
ACCGTTACAGTTGCATCTGT+TGG + chr1.2:59701886-59701905 MS.gene40810:CDS 45.0%
ACTGGTAAACCATCACCAGA+TGG - chr1.2:59703360-59703379 None:intergenic 45.0%
CCCAACAGATGCAACTGTAA+CGG - chr1.2:59701890-59701909 None:intergenic 45.0%
CCGATGCATATTAGATACCC+AGG + chr1.2:59701915-59701934 MS.gene40810:CDS 45.0%
CCGTTACAGTTGCATCTGTT+GGG + chr1.2:59701887-59701906 MS.gene40810:CDS 45.0%
CGTTACAGTTGCATCTGTTG+GGG + chr1.2:59701888-59701907 MS.gene40810:CDS 45.0%
CTTGACAGTTGATCACAGAC+TGG + chr1.2:59701954-59701973 MS.gene40810:CDS 45.0%
CTTGATTGGCAGATCCTTGA+CGG + chr1.2:59701572-59701591 MS.gene40810:intron 45.0%
GCCTGTCCATACTTCACAAA+AGG - chr1.2:59701149-59701168 None:intergenic 45.0%
GTTCTGCAATGCTTACAGAG+AGG + chr1.2:59702790-59702809 MS.gene40810:CDS 45.0%
TCAGAAGAAGAAAGACGCCA+TGG + chr1.2:59703446-59703465 MS.gene40810:CDS 45.0%
TCTTCTGACAGTTTGTGCAG+AGG - chr1.2:59703434-59703453 None:intergenic 45.0%
TGACAGTTTGTGCAGAGGAA+TGG - chr1.2:59703429-59703448 None:intergenic 45.0%
TGCATATTAGATACCCAGGG+AGG + chr1.2:59701919-59701938 MS.gene40810:CDS 45.0%
TTCTGCTTCGAGAGACCAAA+GGG + chr1.2:59701417-59701436 MS.gene40810:intron 45.0%
TTGATTGGCAGATCCTTGAC+GGG + chr1.2:59701573-59701592 MS.gene40810:intron 45.0%
TTTCTTGGAGTTGCTGGCAT+CGG - chr1.2:59702657-59702676 None:intergenic 45.0%
TTTGTGAAGTATGGACAGGC+TGG + chr1.2:59701149-59701168 MS.gene40810:CDS 45.0%
! GCCTTTTGTGAAGTATGGAC+AGG + chr1.2:59701145-59701164 MS.gene40810:CDS 45.0%
! GCTTTCTGCAGTTGGTATTG+TGG + chr1.2:59702749-59702768 MS.gene40810:CDS 45.0%
! TCAGGACCTTTTTCCTTCCA+TGG - chr1.2:59703466-59703485 None:intergenic 45.0%
! TCCTAGCTTTCAAATGCTGG+CGG + chr1.2:59702344-59702363 MS.gene40810:intron 45.0%
! TTCTGCAGTTGGTATTGTGG+AGG + chr1.2:59702752-59702771 MS.gene40810:CDS 45.0%
!! AGGAAGCTCTAAGGTCAAGA+GGG + chr1.2:59702571-59702590 MS.gene40810:intron 45.0%
!! CAGGCTGGTTTGGCAAAAAA+AGG + chr1.2:59701164-59701183 MS.gene40810:CDS 45.0%
!!! ATCCGCTGCTATTTTTGCGA+AGG + chr1.2:59701607-59701626 MS.gene40810:CDS 45.0%
AAGGTGTAAGCAGGGAGGAA+TGG + chr1.2:59701666-59701685 MS.gene40810:CDS 50.0%
AAGGTTGCCAACGGAACAAG+TGG - chr1.2:59701089-59701108 None:intergenic 50.0%
AGAGAGAAACAACACCTCCC+TGG - chr1.2:59701936-59701955 None:intergenic 50.0%
AGGTACACCACGACATGACT+TGG - chr1.2:59702426-59702445 None:intergenic 50.0%
CAACGTATTCGGAGGCAATG+AGG + chr1.2:59702035-59702054 MS.gene40810:CDS 50.0%
CAAGCTGGTGGTTAAGGTGA+TGG + chr1.2:59702460-59702479 MS.gene40810:intron 50.0%
CACCAGATGGTTGATCTGCT+AGG - chr1.2:59703347-59703366 None:intergenic 50.0%
CACTCCGGTATCTAAGCCAT+GGG + chr1.2:59703398-59703417 MS.gene40810:CDS 50.0%
CATACCGCAAGGTGTAAGCA+GGG + chr1.2:59701658-59701677 MS.gene40810:CDS 50.0%
CATCACCTTAACCACCAGCT+TGG - chr1.2:59702462-59702481 None:intergenic 50.0%
CCTTCCCATGGCTTAGATAC+CGG - chr1.2:59703405-59703424 None:intergenic 50.0%
GAAGCAACCACTTGTTCCGT+TGG + chr1.2:59701079-59701098 MS.gene40810:CDS 50.0%
GACCTTAGAGCTTCCTGTTC+AGG - chr1.2:59702567-59702586 None:intergenic 50.0%
GAGAGAAACAACACCTCCCT+GGG - chr1.2:59701935-59701954 None:intergenic 50.0%
GCAGATCAACCATCTGGTGA+TGG + chr1.2:59703348-59703367 MS.gene40810:CDS 50.0%
GGAAGACTCAACGTATTCGG+AGG + chr1.2:59702027-59702046 MS.gene40810:CDS 50.0%
GGCAACACAGGATAGTCTGA+AGG - chr1.2:59702636-59702655 None:intergenic 50.0%
GTTCCGTTGGCAACCTTGAT+CGG + chr1.2:59701092-59701111 MS.gene40810:CDS 50.0%
GTTCTGCTTCGAGAGACCAA+AGG + chr1.2:59701416-59701435 MS.gene40810:intron 50.0%
TCACTCCGGTATCTAAGCCA+TGG + chr1.2:59703397-59703416 MS.gene40810:CDS 50.0%
TCCGCCAGCATTTGAAAGCT+AGG - chr1.2:59702348-59702367 None:intergenic 50.0%
TCTTCCTACTTCACCACCAC+TGG - chr1.2:59702013-59702032 None:intergenic 50.0%
TGCCTAGCAGATCAACCATC+TGG + chr1.2:59703342-59703361 MS.gene40810:CDS 50.0%
! AATGGCTTCAAGCACTGCCT+CGG + chr1.2:59701684-59701703 MS.gene40810:CDS 50.0%
! ATCGATTGGTGACACCGATG+TGG + chr1.2:59702182-59702201 MS.gene40810:CDS 50.0%
! CAGATCCTTGACGGGCATAA+TGG + chr1.2:59701581-59701600 MS.gene40810:intron 50.0%
! CTAGAAAGGCACAATCCACC+AGG - chr1.2:59702162-59702181 None:intergenic 50.0%
! GAAGTATGGACAGGCTGGTT+TGG + chr1.2:59701154-59701173 MS.gene40810:CDS 50.0%
! TCGATTGGTGACACCGATGT+GGG + chr1.2:59702183-59702202 MS.gene40810:CDS 50.0%
! TCTAAGGTCAAGAGGGCTGA+AGG + chr1.2:59702578-59702597 MS.gene40810:CDS 50.0%
!! CAGGAAGCTCTAAGGTCAAG+AGG + chr1.2:59702570-59702589 MS.gene40810:intron 50.0%
AAAGCGACAACTAGAGCCCG+AGG - chr1.2:59701704-59701723 None:intergenic 55.0%
AGCTTGGCAGCAAGTTCTGC+AGG - chr1.2:59702446-59702465 None:intergenic 55.0%
ATCGGCCGTGAGCTACGAAA+TGG + chr1.2:59701110-59701129 MS.gene40810:CDS 55.0%
CAGAGGAATGGACCTTCCCA+TGG - chr1.2:59703417-59703436 None:intergenic 55.0%
CCATACCGCAAGGTGTAAGC+AGG + chr1.2:59701657-59701676 MS.gene40810:CDS 55.0%
CCGGTATCTAAGCCATGGGA+AGG + chr1.2:59703402-59703421 MS.gene40810:CDS 55.0%
CCTGCTTACACCTTGCGGTA+TGG - chr1.2:59701660-59701679 None:intergenic 55.0%
CTGCTAGGCAAACTGCACAG+CGG - chr1.2:59703332-59703351 None:intergenic 55.0%
GTCATGAGTGCCATACCGCA+AGG + chr1.2:59701647-59701666 MS.gene40810:CDS 55.0%
GTTCCAGAAGTTTCCCCTGC+AGG - chr1.2:59701835-59701854 None:intergenic 55.0%
TCACCTGCAGGGGAAACTTC+TGG + chr1.2:59701829-59701848 MS.gene40810:intron 55.0%
TCCTCCCTGCTTACACCTTG+CGG - chr1.2:59701665-59701684 None:intergenic 55.0%
TGCTGCCAAGCTGGTGGTTA+AGG + chr1.2:59702454-59702473 MS.gene40810:CDS 55.0%
! ACAGCCAGTGGTGGTGAAGT+AGG + chr1.2:59702006-59702025 MS.gene40810:CDS 55.0%
! ATGGCTTCAAGCACTGCCTC+GGG + chr1.2:59701685-59701704 MS.gene40810:CDS 55.0%
!! AGAACTTGCTGCCAAGCTGG+TGG + chr1.2:59702448-59702467 MS.gene40810:CDS 55.0%
!! TGCAGAACTTGCTGCCAAGC+TGG + chr1.2:59702445-59702464 MS.gene40810:CDS 55.0%
ACCGCAAGGTGTAAGCAGGG+AGG + chr1.2:59701661-59701680 MS.gene40810:CDS 60.0%
ACGGCTGCCAAGTCATGTCG+TGG + chr1.2:59702416-59702435 MS.gene40810:CDS 60.0%
AGGTAGGGCCTCTTCGCTGT+TGG + chr1.2:59702136-59702155 MS.gene40810:intron 60.0%
CGGCCGATCAAGGTTGCCAA+CGG - chr1.2:59701098-59701117 None:intergenic 60.0%
TCGTAGCTCACGGCCGATCA+AGG - chr1.2:59701108-59701127 None:intergenic 60.0%
!! GTTGCTGGCATCGGCAACAC+AGG - chr1.2:59702648-59702667 None:intergenic 60.0%
CCACCAGGCCAACAGCGAAG+AGG - chr1.2:59702147-59702166 None:intergenic 65.0%
! CCTCTTCGCTGTTGGCCTGG+TGG + chr1.2:59702144-59702163 MS.gene40810:CDS 65.0%
!! AGGGAGCGGGTTACAGCCAG+TGG + chr1.2:59701994-59702013 MS.gene40810:CDS 65.0%
!! GAGCGGGTTACAGCCAGTGG+TGG + chr1.2:59701997-59702016 MS.gene40810:CDS 65.0%
GGGCCTCTTCGCTGTTGGCC+TGG + chr1.2:59702141-59702160 MS.gene40810:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 59701053 59703485 59701053 ID=MS.gene40810
chr1.2 mRNA 59701053 59703485 59701053 ID=MS.gene40810.t1;Parent=MS.gene40810
chr1.2 exon 59701053 59701262 59701053 ID=MS.gene40810.t1.exon1;Parent=MS.gene40810.t1
chr1.2 CDS 59701053 59701262 59701053 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
chr1.2 exon 59701584 59701755 59701584 ID=MS.gene40810.t1.exon2;Parent=MS.gene40810.t1
chr1.2 CDS 59701584 59701755 59701584 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
chr1.2 exon 59701839 59702056 59701839 ID=MS.gene40810.t1.exon3;Parent=MS.gene40810.t1
chr1.2 CDS 59701839 59702056 59701839 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
chr1.2 exon 59702138 59702245 59702138 ID=MS.gene40810.t1.exon4;Parent=MS.gene40810.t1
chr1.2 CDS 59702138 59702245 59702138 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
chr1.2 exon 59702350 59702475 59702350 ID=MS.gene40810.t1.exon5;Parent=MS.gene40810.t1
chr1.2 CDS 59702350 59702475 59702350 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
chr1.2 exon 59702573 59702811 59702573 ID=MS.gene40810.t1.exon6;Parent=MS.gene40810.t1
chr1.2 CDS 59702573 59702811 59702573 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
chr1.2 exon 59703287 59703485 59703287 ID=MS.gene40810.t1.exon7;Parent=MS.gene40810.t1
chr1.2 CDS 59703287 59703485 59703287 ID=cds.MS.gene40810.t1;Parent=MS.gene40810.t1
Gene Sequence

>MS.gene40810

ATGAGTAAGACTGAATTATCAAGGATGAAGCAACCACTTGTTCCGTTGGCAACCTTGATCGGCCGTGAGCTACGAAATGGAAAAACGGAGAAGCCTTTTGTGAAGTATGGACAGGCTGGTTTGGCAAAAAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGCCATAGAGTTCCTGGCGATTCTTCAACGTCATTTTCTGTTTTCGCGGTAGGTATCATACACGTTCTTTGTTTACATGTGTTTTTAATTAACTTGATTGACATTCTTTTGTTTTTAGTGAAATGTTTGATGAGAGGTATTTGATTGGTAAGAAATGAAAATATTGCTTAAGATAAGATCTTATGAATGAATTGGCAATTTGTTCTGCTTCGAGAGACCAAAGGGAATGTATCTTTCTTAGGTTTAGTACATAAATGAGAGTTGAAGTGTGTGATTTCTATCTTATCTTACATTTTCTCAGTGATCAAGTGGAGCGTCAATTTATTCCCACAATGGTTATGATATCAATAAGGAATTCTTGATTGGCAGATCCTTGACGGGCATAATGGTATATCCGCTGCTATTTTTGCGAAGGAAAACATAATAAACAATGTCATGAGTGCCATACCGCAAGGTGTAAGCAGGGAGGAATGGCTTCAAGCACTGCCTCGGGCTCTAGTTGTCGCTTTTGTGAAAACTGACATGGAATTTCAGAAAAAAGGTACACACACAGTTTTCTTTGTATCCTTATTGGAGCTGTACTTGTTCATGTACACTCATTCTAAAATTTAATTTCACCTGCAGGGGAAACTTCTGGAACGACAGCTACGTTTGTGATTATTGATGGATGGACCGTTACAGTTGCATCTGTTGGGGATTCCCGATGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGACTGGAAGAAAATGTAGAAGAGAGGGAGCGGGTTACAGCCAGTGGTGGTGAAGTAGGAAGACTCAACGTATTCGGAGGCAATGAGGTATGATGTGTAATCTTCTTCATATTCCTTTCATATAATTTCTTCCTTATCTAACTTGTTTTGGTTCCTTAATATGTTTAGGTAGGGCCTCTTCGCTGTTGGCCTGGTGGATTGTGCCTTTCTAGATCGATTGGTGACACCGATGTGGGAGAGTATATCGTTCCAATACCACATGTTAAGCAAGTGAAGGTGAGTTGGTTTCATTTTCATGGTTTTAGTCTAGTGACCCTTTTATGTGAAGGTGTTTACTTCTAAAGTTCAATGCTCACTGGCTCCCCTGATTTGTTTCCTAGCTTTCAAATGCTGGCGGAAGACTAATTATAGCTTCTGATGGAATTTGGGATACTTTGTCTTCTGATACGGCTGCCAAGTCATGTCGTGGTGTACCTGCAGAACTTGCTGCCAAGCTGGTGGTTAAGGTGATGGTTATTTGTGGCAGTGTTCTTATTTTTTGAGGAATTCAAGTCTCATTATGTTGGTTACTCAATGCTTTGTCTATTGTTTTAACCTGAACAGGAAGCTCTAAGGTCAAGAGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACTATCCTGTGTTGCCGATGCCAGCAACTCCAAGAAAGAAACATAATGTGCTTAGTTCACTTCTCTTTGGAAAGAAATCTCAAAACTCGACAAACAAAGGAACTAATAAGCTTTCTGCAGTTGGTATTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGTCACTCTTAGACTATAACTGCAAAATTTATATTTGCATGCTGCCTTTTAAAGTTTAGTAGTTCTTTTGTGCCATCATCAACAAGTGATTGGAACAAAAATGTTTAGGGTCTGTTTACTTCGGGTGTTTTCTGTTTTTCATTTTAACTGATAAAATAAATATTAGAGACATTATAGACATTTTTGAAAATGCATTTTATAAATGGATTCAATATTTCTGAAAATTCTGAAAAATGTCAAAACATTGTTGTTAGTGTTTCCGAAAATGCACTTTCTCTAGTTTGCCTTCATGTTCTCTCAATGACAGCCAAAAAGATTCATAATCAAATGTCATAAAGATTCATAATCAAATGTCATTCCAGCTGCCGATGTAAAAAGTAAAAATTGAAAATGTTTAGAAAGTAAACATGTCCTTATTTTCCCATTTTGGGTGTATTCATGTGTTTGATAAGATTTTTTGTTTTCTTAAAATGCAGGCTAGGTAAGGATGTTCCTTCCAATACAAATTCTGGTATTCACCGCTGTGCAGTTTGCCTAGCAGATCAACCATCTGGTGATGGTTTACCAGTGAACACCGATCATTTTATCACTCCGGTATCTAAGCCATGGGAAGGTCCATTCCTCTGCACAAACTGTCAGAAGAAGAAAGACGCCATGGAAGGAAAAAGGTCCTGA
Protein sequence

>MS.gene40810.t1

MSKTELSRMKQPLVPLATLIGRELRNGKTEKPFVKYGQAGLAKKGEDYFLIKTDCHRVPGDSSTSFSVFAILDGHNGISAAIFAKENIINNVMSAIPQGVSREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDTAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPVLPMPATPRKKHNVLSSLLFGKKSQNSTNKGTNKLSAVGIVEELFEEGSAMLTERLGKDVPSNTNSGIHRCAVCLADQPSGDGLPVNTDHFITPVSKPWEGPFLCTNCQKKKDAMEGKRS